Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072260 | RHN47559.1 | 88.889 | 90 | 10 | 0 | 22 | 111 | 1 | 90 | 1.68e-50 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072260 | A0A396H2K1 | 88.889 | 90 | 10 | 0 | 22 | 111 | 1 | 90 | 8.04e-51 | 165 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1072260 | Msa1410550 | 0.806777 | 6.977123e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072260 | MtrunA17_Chr7g0254281 | 88.889 | 90 | 10 | 0 | 22 | 111 | 1 | 90 | 1.55e-54 | 165 |
| Msa1072260 | MtrunA17_Chr8g0362511 | 43.836 | 73 | 41 | 0 | 36 | 108 | 291 | 363 | 3.19e-18 | 78.6 |
| Msa1072260 | MtrunA17_Chr5g0402821 | 32.990 | 97 | 64 | 1 | 13 | 108 | 226 | 322 | 1.77e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 16 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAGATTTCAATGCAATT+TGG | 0.247335 | 7_2:-69279045 | None:intergenic |
| TCTTAAGGACAAACGTCTTT+TGG | 0.272617 | 7_2:+69279071 | Msa1072260:CDS |
| TGAAATCTTGTTAACTCTTA+AGG | 0.281042 | 7_2:+69279056 | Msa1072260:CDS |
| GTTGAAGTCCTTGCTTGTTT+TGG | 0.285125 | 7_2:-69278197 | None:intergenic |
| GAAATATTGCTTTGATGATT+TGG | 0.310586 | 7_2:+69279164 | Msa1072260:CDS |
| AAATATAAATTCATTGCAAT+AGG | 0.438907 | 7_2:-69279336 | None:intergenic |
| GCTTTAGAATTGATTAAAGA+TGG | 0.453577 | 7_2:+69279114 | Msa1072260:CDS |
| TCATTCGGATGTTAAACCTC+CGG | 0.499104 | 7_2:+69279251 | Msa1072260:three_prime_UTR |
| GGAGACACATCTTATATCAA+TGG | 0.499972 | 7_2:+69279009 | Msa1072260:CDS |
| ATTCACACACACATTAGAAC+CGG | 0.509522 | 7_2:-69279270 | None:intergenic |
| GCTTTGATGATTTGGCGACT+TGG | 0.547204 | 7_2:+69279172 | Msa1072260:CDS |
| AAATAGTGCTTGAAGCAAGC+CGG | 0.580722 | 7_2:+69276223 | Msa1072260:intron |
| ATGGACTTACATCAGACATG+AGG | 0.617157 | 7_2:-69278229 | None:intergenic |
| CACACACACATTAGAACCGG+AGG | 0.636475 | 7_2:-69279267 | None:intergenic |
| TGGACTTACATCAGACATGA+GGG | 0.638298 | 7_2:-69278228 | None:intergenic |
| CTACAACACCAAAACAAGCA+AGG | 0.653677 | 7_2:+69278189 | Msa1072260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAATCTAACAATAT+CGG | - | chr7_2:69277065-69277084 | None:intergenic | 10.0% |
| !! | AACTAAAATTATAGAAAAAT+TGG | - | chr7_2:69277781-69277800 | None:intergenic | 10.0% |
| !! | TTATTTACATATTTACAAAA+CGG | + | chr7_2:69277931-69277950 | Msa1072260:intron | 10.0% |
| !! | AAAAAAAAAAAATAGTGTAA+AGG | - | chr7_2:69278649-69278668 | None:intergenic | 10.0% |
| !!! | AGAAAAAAAAAACTTTTGAA+AGG | + | chr7_2:69275840-69275859 | Msa1072260:intron | 15.0% |
| !!! | GAAAAAAAAAACTTTTGAAA+GGG | + | chr7_2:69275841-69275860 | Msa1072260:intron | 15.0% |
| !!! | TTTTACAAAATCTTATCTAA+TGG | + | chr7_2:69276168-69276187 | Msa1072260:intron | 15.0% |
| !!! | ACATGGATTTTTTTTTTTAA+AGG | - | chr7_2:69277262-69277281 | None:intergenic | 15.0% |
| !! | ATTTATTCTAAATATATCCT+TGG | + | chr7_2:69277323-69277342 | Msa1072260:intron | 15.0% |
| !!! | TTAAGATTTTTCTTTTCATT+CGG | + | chr7_2:69279236-69279255 | Msa1072260:exon | 15.0% |
| !! | ATTAATTTCAACCAAATGTT+TGG | + | chr7_2:69275691-69275710 | Msa1072260:intron | 20.0% |
| !! | TTAATTTCAACCAAATGTTT+GGG | + | chr7_2:69275692-69275711 | Msa1072260:intron | 20.0% |
| !!! | TTTTTCTGTAAATTTCTTGT+GGG | - | chr7_2:69275815-69275834 | None:intergenic | 20.0% |
| !!! | TTTTTTCTGTAAATTTCTTG+TGG | - | chr7_2:69275816-69275835 | None:intergenic | 20.0% |
| !!! | TTGACATTTCCATTTTATTT+AGG | + | chr7_2:69276844-69276863 | Msa1072260:intron | 20.0% |
| !!! | TTTCCATTTTATTTAGGAAA+TGG | + | chr7_2:69276850-69276869 | Msa1072260:intron | 20.0% |
| !! | ACATTAAGTCCTATAAATAA+GGG | - | chr7_2:69276888-69276907 | None:intergenic | 20.0% |
| !! | AAATTCTTATGTAATAGTCA+TGG | - | chr7_2:69276922-69276941 | None:intergenic | 20.0% |
| !! | TGTGTTTAATCAAACAATAT+CGG | - | chr7_2:69277177-69277196 | None:intergenic | 20.0% |
| !!! | ATTTTCTTTACAATATCACA+TGG | - | chr7_2:69277279-69277298 | None:intergenic | 20.0% |
| !! | TGTGATATTGTAAAGAAAAT+AGG | + | chr7_2:69277279-69277298 | Msa1072260:intron | 20.0% |
| !! | TGGTTAATCATATATTTCTT+TGG | + | chr7_2:69278031-69278050 | Msa1072260:intron | 20.0% |
| !! | TAATAACTTAAAAAGAGAGA+TGG | - | chr7_2:69278251-69278270 | None:intergenic | 20.0% |
| !!! | TGATTTTAGATGTTTCAATT+TGG | + | chr7_2:69278350-69278369 | Msa1072260:intron | 20.0% |
| !! | TTTAATATCAACTGAATGTT+TGG | + | chr7_2:69278383-69278402 | Msa1072260:intron | 20.0% |
| !! | TTAATATCAACTGAATGTTT+GGG | + | chr7_2:69278384-69278403 | Msa1072260:intron | 20.0% |
| !! | ATCTGATCAAAAAAATTACA+TGG | + | chr7_2:69278538-69278557 | Msa1072260:intron | 20.0% |
| !! | ATAGTTGAAAAAGATGATAA+TGG | + | chr7_2:69278988-69279007 | Msa1072260:CDS | 20.0% |
| !!! | GATAATCTTCAATTTTAAGA+AGG | + | chr7_2:69279194-69279213 | Msa1072260:CDS | 20.0% |
| ! | TAATTTCAACCAAATGTTTG+GGG | + | chr7_2:69275693-69275712 | Msa1072260:intron | 25.0% |
| ! | CATATTAAATCTAAGTCACA+TGG | + | chr7_2:69275776-69275795 | Msa1072260:intron | 25.0% |
| ! | ACAATAGGAGATTTAACATA+CGG | - | chr7_2:69276027-69276046 | None:intergenic | 25.0% |
| ! | TGCTATGTCAAAATTAGAAA+AGG | + | chr7_2:69276334-69276353 | Msa1072260:intron | 25.0% |
| ! | AAATTGAGAATTCAGAGAAT+TGG | + | chr7_2:69276587-69276606 | Msa1072260:intron | 25.0% |
| !! | TTTTCTCTATCAAAGCTTTA+TGG | - | chr7_2:69276624-69276643 | None:intergenic | 25.0% |
| ! | CAAATTGAGAGAACTTAAAA+TGG | - | chr7_2:69276725-69276744 | None:intergenic | 25.0% |
| ! | ACATTTATACACCAAAACTT+TGG | - | chr7_2:69276756-69276775 | None:intergenic | 25.0% |
| ! | TCTCCATTTCCTAAATAAAA+TGG | - | chr7_2:69276856-69276875 | None:intergenic | 25.0% |
| !!! | ATTTTATTTAGGAAATGGAG+AGG | + | chr7_2:69276855-69276874 | Msa1072260:intron | 25.0% |
| ! | CACATTAAGTCCTATAAATA+AGG | - | chr7_2:69276889-69276908 | None:intergenic | 25.0% |
| ! | ATTTCGCAAAAATATGTTCA+TGG | + | chr7_2:69276938-69276957 | Msa1072260:intron | 25.0% |
| ! | TTTCGCAAAAATATGTTCAT+GGG | + | chr7_2:69276939-69276958 | Msa1072260:intron | 25.0% |
| !!! | TTTTTTAGGCACAATTTTTG+TGG | - | chr7_2:69277110-69277129 | None:intergenic | 25.0% |
| !!! | CACATCGAATGAAATTTTTT+AGG | - | chr7_2:69277124-69277143 | None:intergenic | 25.0% |
| !!! | TGTTAATTGAGCTAGTTTTA+TGG | - | chr7_2:69277151-69277170 | None:intergenic | 25.0% |
| ! | TTAAGTGATTGTCATTGAAA+TGG | - | chr7_2:69277720-69277739 | None:intergenic | 25.0% |
| ! | TATCTAATTAAAACGAGCTA+AGG | + | chr7_2:69277837-69277856 | Msa1072260:intron | 25.0% |
| ! | ATAGATATCTAACTACAAAG+TGG | + | chr7_2:69277868-69277887 | Msa1072260:intron | 25.0% |
| ! | TGAGATATATGTGAAATAAG+TGG | - | chr7_2:69277903-69277922 | None:intergenic | 25.0% |
| ! | TTAGATCTATCTATCAATAG+AGG | - | chr7_2:69278109-69278128 | None:intergenic | 25.0% |
| ! | TAATATCAACTGAATGTTTG+GGG | + | chr7_2:69278385-69278404 | Msa1072260:intron | 25.0% |
| ! | GATTTCAACCAAATCTAAAT+TGG | + | chr7_2:69278438-69278457 | Msa1072260:intron | 25.0% |
| ! | AATGCAAACCAATTTAGATT+TGG | - | chr7_2:69278449-69278468 | None:intergenic | 25.0% |
| ! | AAAAAATTACATGGTTGACT+TGG | + | chr7_2:69278547-69278566 | Msa1072260:intron | 25.0% |
| ! | AAAGTCAACACTTATATCAT+TGG | - | chr7_2:69278624-69278643 | None:intergenic | 25.0% |
| !! | GATACTTTTATGAGTATGTT+TGG | + | chr7_2:69278677-69278696 | Msa1072260:intron | 25.0% |
| ! | GACTTTCGTAAAAAATTACA+TGG | + | chr7_2:69278739-69278758 | Msa1072260:intron | 25.0% |
| ! | TTCCATTTACATGTATTGTT+CGG | + | chr7_2:69278816-69278835 | Msa1072260:intron | 25.0% |
| !!! | TTCGTTGTGTTTTTTACATT+AGG | + | chr7_2:69278936-69278955 | Msa1072260:intron | 25.0% |
| !!! | TTTTTTACATTAGGTGAAAG+AGG | + | chr7_2:69278945-69278964 | Msa1072260:intron | 25.0% |
| ! | AACAAGATTTCAATGCAATT+TGG | - | chr7_2:69279048-69279067 | None:intergenic | 25.0% |
| ! | TGAAATCTTGTTAACTCTTA+AGG | + | chr7_2:69279056-69279075 | Msa1072260:CDS | 25.0% |
| !!! | GCTTTAGAATTGATTAAAGA+TGG | + | chr7_2:69275879-69275898 | Msa1072260:intron | 25.0% |
| !! | GAAATATTGCTTTGATGATT+TGG | + | chr7_2:69279164-69279183 | Msa1072260:CDS | 25.0% |
| AGATGCAAGTTCATTACAAT+AGG | - | chr7_2:69276042-69276061 | None:intergenic | 30.0% | |
| ATGAGAGTAAAGAAATCTAC+CGG | - | chr7_2:69276245-69276264 | None:intergenic | 30.0% | |
| TTTACTCTCATGGATGAAAT+TGG | + | chr7_2:69276254-69276273 | Msa1072260:intron | 30.0% | |
| TTTCATCCAGAATGTTAACA+TGG | - | chr7_2:69276288-69276307 | None:intergenic | 30.0% | |
| CATAGCATGATATTTCATCA+GGG | - | chr7_2:69276321-69276340 | None:intergenic | 30.0% | |
| ACATAGCATGATATTTCATC+AGG | - | chr7_2:69276322-69276341 | None:intergenic | 30.0% | |
| AATCAGATAAACATTGCAAG+TGG | - | chr7_2:69276423-69276442 | None:intergenic | 30.0% | |
| ACTCAGTAGAAATCTTAAGT+AGG | + | chr7_2:69276488-69276507 | Msa1072260:intron | 30.0% | |
| GAAATCTTAAGTAGGATGTT+TGG | + | chr7_2:69276496-69276515 | Msa1072260:intron | 30.0% | |
| CTGAATTCTCAATTTCTCAA+CGG | - | chr7_2:69276582-69276601 | None:intergenic | 30.0% | |
| ! | ACACACTAGTCCTTATTTAT+AGG | + | chr7_2:69276686-69276705 | Msa1072260:intron | 30.0% |
| ! | CACACTAGTCCTTATTTATA+GGG | + | chr7_2:69276687-69276706 | Msa1072260:intron | 30.0% |
| ! | TTGTTCCATTACCAAAGTTT+TGG | + | chr7_2:69276742-69276761 | Msa1072260:intron | 30.0% |
| ATACACCAAAACTTTGGTAA+TGG | - | chr7_2:69276750-69276769 | None:intergenic | 30.0% | |
| CAAAGTCTGAATTTGAATCA+TGG | - | chr7_2:69277204-69277223 | None:intergenic | 30.0% | |
| TCTAAATATATCCTTGGAAG+AGG | + | chr7_2:69277329-69277348 | Msa1072260:intron | 30.0% | |
| ACTACAATTAGCAGCTAATT+TGG | + | chr7_2:69277535-69277554 | Msa1072260:intron | 30.0% | |
| GACAATCACTTAAACTCATT+TGG | + | chr7_2:69277727-69277746 | Msa1072260:intron | 30.0% | |
| TTTACTTTGCTTCTAATGAG+AGG | + | chr7_2:69277751-69277770 | Msa1072260:intron | 30.0% | |
| TTAAAACGAGCTAAGGTAAA+TGG | + | chr7_2:69277844-69277863 | Msa1072260:intron | 30.0% | |
| TGATTATTGAATCCACTTTG+TGG | + | chr7_2:69277983-69278002 | Msa1072260:intron | 30.0% | |
| GTGATACACTAAATAGTTGA+TGG | + | chr7_2:69278011-69278030 | Msa1072260:intron | 30.0% | |
| GTAGTAAATGAAGTAGAGAT+AGG | - | chr7_2:69278329-69278348 | None:intergenic | 30.0% | |
| CTATCAAGATTCAGATCATA+TGG | + | chr7_2:69278505-69278524 | Msa1072260:intron | 30.0% | |
| TTTATGAGTATGTTTGGATC+AGG | + | chr7_2:69278683-69278702 | Msa1072260:intron | 30.0% | |
| GAAAGTCAACAAAATCATTG+TGG | - | chr7_2:69278726-69278745 | None:intergenic | 30.0% | |
| AACCGAACAATACATGTAAA+TGG | - | chr7_2:69278821-69278840 | None:intergenic | 30.0% | |
| ATTGTCCATCTCTACTTCAT+TGG | + | chr7_2:69275636-69275655 | Msa1072260:intron | 35.0% | |
| AACCAAATGTTTGGGGATAT+TGG | + | chr7_2:69275700-69275719 | Msa1072260:intron | 35.0% | |
| ACCAAATGTTTGGGGATATT+GGG | + | chr7_2:69275701-69275720 | Msa1072260:intron | 35.0% | |
| CTCAAAATACTGAAAACCCT+AGG | - | chr7_2:69275727-69275746 | None:intergenic | 35.0% | |
| TCTAAGTCACATGGTTGATT+TGG | + | chr7_2:69275785-69275804 | Msa1072260:intron | 35.0% | |
| AAGATTGTATGCGTGTGATT+TGG | + | chr7_2:69275933-69275952 | Msa1072260:intron | 35.0% | |
| ! | TGTGATTTGGCAATTTGGAT+AGG | + | chr7_2:69275946-69275965 | Msa1072260:intron | 35.0% |
| GATAGGCTACAAGTTTGAAA+AGG | + | chr7_2:69275963-69275982 | Msa1072260:intron | 35.0% | |
| !! | AGGAAGAACTCTAGAATTCA+TGG | + | chr7_2:69275983-69276002 | Msa1072260:intron | 35.0% |
| GGTAGATTTCTTTACTCTCA+TGG | + | chr7_2:69276244-69276263 | Msa1072260:intron | 35.0% | |
| TACAGACCATGTTAACATTC+TGG | + | chr7_2:69276279-69276298 | Msa1072260:intron | 35.0% | |
| !! | AGAAAAGGTACTACTGTGTA+AGG | + | chr7_2:69276349-69276368 | Msa1072260:intron | 35.0% |
| !! | GAAAAGGTACTACTGTGTAA+GGG | + | chr7_2:69276350-69276369 | Msa1072260:intron | 35.0% |
| AACAAGATCATCTCATTAGG+TGG | - | chr7_2:69276393-69276412 | None:intergenic | 35.0% | |
| ACCTAATGAGATGATCTTGT+TGG | + | chr7_2:69276392-69276411 | Msa1072260:intron | 35.0% | |
| ACCAACAAGATCATCTCATT+AGG | - | chr7_2:69276396-69276415 | None:intergenic | 35.0% | |
| TAATGAGATGATCTTGTTGG+TGG | + | chr7_2:69276395-69276414 | Msa1072260:intron | 35.0% | |
| GGATCTTCACCCTATAAATA+AGG | - | chr7_2:69276699-69276718 | None:intergenic | 35.0% | |
| TGAGAGAACTTAAAATGGAG+AGG | - | chr7_2:69276720-69276739 | None:intergenic | 35.0% | |
| GCACACATTTCAAGAATTGA+AGG | - | chr7_2:69276789-69276808 | None:intergenic | 35.0% | |
| ! | GGATCTTCACCCTTATTTAT+AGG | + | chr7_2:69276876-69276895 | Msa1072260:intron | 35.0% |
| AAAATATGTTCATGGGAAGC+AGG | + | chr7_2:69276946-69276965 | Msa1072260:intron | 35.0% | |
| AAATATGTTCATGGGAAGCA+GGG | + | chr7_2:69276947-69276966 | Msa1072260:intron | 35.0% | |
| AATTGAGCACACATCTTCTA+TGG | - | chr7_2:69277368-69277387 | None:intergenic | 35.0% | |
| ATAAGGGTAGTTGTGAGAAT+TGG | + | chr7_2:69277447-69277466 | Msa1072260:intron | 35.0% | |
| TAAGGGTAGTTGTGAGAATT+GGG | + | chr7_2:69277448-69277467 | Msa1072260:intron | 35.0% | |
| GAAAATGTCTTGCATCTGAT+GGG | - | chr7_2:69277621-69277640 | None:intergenic | 35.0% | |
| GTATCACATTAACCACAAAG+TGG | - | chr7_2:69277998-69278017 | None:intergenic | 35.0% | |
| ! | TATCAATAGAGGCGTGTAAA+TGG | - | chr7_2:69278098-69278117 | None:intergenic | 35.0% |
| TGTTTGGGGATATTGAAACT+AGG | + | chr7_2:69278399-69278418 | Msa1072260:intron | 35.0% | |
| TTTGAGTCGATATTGCATGT+TGG | - | chr7_2:69278796-69278815 | None:intergenic | 35.0% | |
| GGAGACACATCTTATATCAA+TGG | + | chr7_2:69279009-69279028 | Msa1072260:CDS | 35.0% | |
| ! | TCTTAAGGACAAACGTCTTT+TGG | + | chr7_2:69279071-69279090 | Msa1072260:CDS | 35.0% |
| ATTCACACACACATTAGAAC+CGG | - | chr7_2:69279273-69279292 | None:intergenic | 35.0% | |
| TCAAGCCAATGAAGTAGAGA+TGG | - | chr7_2:69275644-69275663 | None:intergenic | 40.0% | |
| TGGCTTGAGTTTAGATGTTC+TGG | + | chr7_2:69275656-69275675 | Msa1072260:intron | 40.0% | |
| ! | ATGCGTGTGATTTGGCAATT+TGG | + | chr7_2:69275941-69275960 | Msa1072260:intron | 40.0% |
| AAATAGTGCTTGAAGCAAGC+CGG | + | chr7_2:69276223-69276242 | Msa1072260:intron | 40.0% | |
| TCTCAACGGTTGAAGTTTCA+AGG | - | chr7_2:69276568-69276587 | None:intergenic | 40.0% | |
| AATATGTTCATGGGAAGCAG+GGG | + | chr7_2:69276948-69276967 | Msa1072260:intron | 40.0% | |
| TTGTTCTACGTGTATCCCAA+AGG | + | chr7_2:69277084-69277103 | Msa1072260:intron | 40.0% | |
| ! | GCACAATTTTTGTGGCCTTT+GGG | - | chr7_2:69277102-69277121 | None:intergenic | 40.0% |
| !! | TTCTCATGCTGCTTTCTGTT+GGG | - | chr7_2:69277405-69277424 | None:intergenic | 40.0% |
| AGAAAGCAGCATGAGAAGAA+AGG | + | chr7_2:69277408-69277427 | Msa1072260:intron | 40.0% | |
| ACGGGGTAGCAATAGAATAA+GGG | + | chr7_2:69277431-69277450 | Msa1072260:intron | 40.0% | |
| !! | GTAGTGTTACTTCCCATCAT+GGG | - | chr7_2:69277520-69277539 | None:intergenic | 40.0% |
| !! | TGTAGTGTTACTTCCCATCA+TGG | - | chr7_2:69277521-69277540 | None:intergenic | 40.0% |
| CGAAAATGTCTTGCATCTGA+TGG | - | chr7_2:69277622-69277641 | None:intergenic | 40.0% | |
| !! | GAGCAGTGAACAATTGGTTT+TGG | - | chr7_2:69278158-69278177 | None:intergenic | 40.0% |
| !!! | TTTTGGTGTTGTAGTGTCTC+TGG | - | chr7_2:69278183-69278202 | None:intergenic | 40.0% |
| CTACAACACCAAAACAAGCA+AGG | + | chr7_2:69278189-69278208 | Msa1072260:CDS | 40.0% | |
| ! | GTTGAAGTCCTTGCTTGTTT+TGG | - | chr7_2:69278200-69278219 | None:intergenic | 40.0% |
| TGGACTTACATCAGACATGA+GGG | - | chr7_2:69278231-69278250 | None:intergenic | 40.0% | |
| ATGGACTTACATCAGACATG+AGG | - | chr7_2:69278232-69278251 | None:intergenic | 40.0% | |
| AAAAAAACCCATCAGGACAC+TGG | - | chr7_2:69278578-69278597 | None:intergenic | 40.0% | |
| CACTGTGAAAAAAACCCATC+AGG | - | chr7_2:69278585-69278604 | None:intergenic | 40.0% | |
| ATGCGAAGTTACATGTTCAG+AGG | - | chr7_2:69278861-69278880 | None:intergenic | 40.0% | |
| TTCGCATTGTTTGTGTGTTG+AGG | + | chr7_2:69278874-69278893 | Msa1072260:intron | 40.0% | |
| ! | AAGGACAAACGTCTTTTGGA+TGG | + | chr7_2:69279075-69279094 | Msa1072260:CDS | 40.0% |
| TCATTCGGATGTTAAACCTC+CGG | + | chr7_2:69279251-69279270 | Msa1072260:three_prime_UTR | 40.0% | |
| GCCCAATATCCCCAAACATT+TGG | - | chr7_2:69275705-69275724 | None:intergenic | 45.0% | |
| ACCTGGACTCTCAATATCAC+TGG | + | chr7_2:69276974-69276993 | Msa1072260:intron | 45.0% | |
| CCTGGACTCTCAATATCACT+GGG | + | chr7_2:69276975-69276994 | Msa1072260:intron | 45.0% | |
| CTGGACTCTCAATATCACTG+GGG | + | chr7_2:69276976-69276995 | Msa1072260:intron | 45.0% | |
| ! | GGCACAATTTTTGTGGCCTT+TGG | - | chr7_2:69277103-69277122 | None:intergenic | 45.0% |
| ! | GATTTTGCACACCTCTTCCA+AGG | - | chr7_2:69277343-69277362 | None:intergenic | 45.0% |
| !! | TCTCATGCTGCTTTCTGTTG+GGG | - | chr7_2:69277404-69277423 | None:intergenic | 45.0% |
| !! | CTTCTCATGCTGCTTTCTGT+TGG | - | chr7_2:69277406-69277425 | None:intergenic | 45.0% |
| AGCAGCATGAGAAGAAAGGA+CGG | + | chr7_2:69277412-69277431 | Msa1072260:intron | 45.0% | |
| GACGGGGTAGCAATAGAATA+AGG | + | chr7_2:69277430-69277449 | Msa1072260:intron | 45.0% | |
| TAGTTGTGAGAATTGGGCCT+GGG | + | chr7_2:69277454-69277473 | Msa1072260:intron | 45.0% | |
| GTATGTTTGGATCAGGACTC+TGG | + | chr7_2:69278690-69278709 | Msa1072260:intron | 45.0% | |
| !! | ATCAGGACTCTGGAATCACA+GGG | + | chr7_2:69278700-69278719 | Msa1072260:intron | 45.0% |
| ! | GCTTTGATGATTTGGCGACT+TGG | + | chr7_2:69279172-69279191 | Msa1072260:CDS | 45.0% |
| TGTTTGGGGATATTGGGCCT+AGG | + | chr7_2:69275707-69275726 | Msa1072260:intron | 50.0% | |
| GTTTGGGGATATTGGGCCTA+GGG | + | chr7_2:69275708-69275727 | Msa1072260:intron | 50.0% | |
| CCCAGTGATATTGAGAGTCC+AGG | - | chr7_2:69276978-69276997 | None:intergenic | 50.0% | |
| ! | GCTGCTTTCTGTTGGGGTAA+CGG | - | chr7_2:69277398-69277417 | None:intergenic | 50.0% |
| GCAGCATGAGAAGAAAGGAC+GGG | + | chr7_2:69277413-69277432 | Msa1072260:intron | 50.0% | |
| CAGCATGAGAAGAAAGGACG+GGG | + | chr7_2:69277414-69277433 | Msa1072260:intron | 50.0% | |
| GTAGTTGTGAGAATTGGGCC+TGG | + | chr7_2:69277453-69277472 | Msa1072260:intron | 50.0% | |
| !! | GTGTTACTTCCCATCATGGG+CGG | - | chr7_2:69277517-69277536 | None:intergenic | 50.0% |
| CTGATGGGACTTTGTTCCTG+TGG | - | chr7_2:69277606-69277625 | None:intergenic | 50.0% | |
| CTGGTGGAGCAGTGAACAAT+TGG | - | chr7_2:69278164-69278183 | None:intergenic | 50.0% | |
| !! | TGGTGTTGTAGTGTCTCTGG+TGG | - | chr7_2:69278180-69278199 | None:intergenic | 50.0% |
| !! | GATCAGGACTCTGGAATCAC+AGG | + | chr7_2:69278699-69278718 | Msa1072260:intron | 50.0% |
| CACACACACATTAGAACCGG+AGG | - | chr7_2:69279270-69279289 | None:intergenic | 50.0% | |
| ATGTTCATGGGAAGCAGGGG+TGG | + | chr7_2:69276951-69276970 | Msa1072260:intron | 55.0% | |
| CAACCAAAATCCCCTGCCAC+AGG | + | chr7_2:69277587-69277606 | Msa1072260:intron | 55.0% | |
| ! | GTTCCTGTGGCAGGGGATTT+TGG | - | chr7_2:69277593-69277612 | None:intergenic | 55.0% |
| GGACTTTGTTCCTGTGGCAG+GGG | - | chr7_2:69277600-69277619 | None:intergenic | 55.0% | |
| GGGACTTTGTTCCTGTGGCA+GGG | - | chr7_2:69277601-69277620 | None:intergenic | 55.0% | |
| TGGGACTTTGTTCCTGTGGC+AGG | - | chr7_2:69277602-69277621 | None:intergenic | 55.0% | |
| TGGAACAGCCAGTGTCCTGA+TGG | + | chr7_2:69278567-69278586 | Msa1072260:intron | 55.0% | |
| GGAACAGCCAGTGTCCTGAT+GGG | + | chr7_2:69278568-69278587 | Msa1072260:intron | 55.0% | |
| TGTGAGAATTGGGCCTGGGC+TGG | + | chr7_2:69277458-69277477 | Msa1072260:intron | 60.0% | |
| GGTGTGGCACTTGCCACACT+AGG | + | chr7_2:69277479-69277498 | Msa1072260:intron | 60.0% | |
| GCACTTGCCACACTAGGCCT+TGG | + | chr7_2:69277485-69277504 | Msa1072260:intron | 60.0% | |
| ATGGGAAGCAGGGGTGGACC+TGG | + | chr7_2:69276957-69276976 | Msa1072260:intron | 65.0% | |
| !! | GAATTGGGCCTGGGCTGGTG+TGG | + | chr7_2:69277463-69277482 | Msa1072260:intron | 65.0% |
| TGCCACACTAGGCCTTGGCC+AGG | + | chr7_2:69277490-69277509 | Msa1072260:intron | 65.0% | |
| GACCTGGCCAAGGCCTAGTG+TGG | - | chr7_2:69277495-69277514 | None:intergenic | 65.0% | |
| ATCATGGGCGGACCTGGCCA+AGG | - | chr7_2:69277505-69277524 | None:intergenic | 65.0% | |
| TTGGCCAGGTCCGCCCATGA+TGG | + | chr7_2:69277504-69277523 | Msa1072260:intron | 65.0% | |
| TGGCCAGGTCCGCCCATGAT+GGG | + | chr7_2:69277505-69277524 | Msa1072260:intron | 65.0% | |
| CTTCCCATCATGGGCGGACC+TGG | - | chr7_2:69277511-69277530 | None:intergenic | 65.0% | |
| GGCAAGTGCCACACCAGCCC+AGG | - | chr7_2:69277474-69277493 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 69275610 | 69279346 | 69275610 | ID=Msa1072260;Name=Msa1072260 |
| chr7_2 | mRNA | 69275610 | 69279346 | 69275610 | ID=Msa1072260-mRNA-1;Parent=Msa1072260;Name=Msa1072260-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.33|0.25|0.5|0.33|0.75|4|107|117 |
| chr7_2 | exon | 69275610 | 69275616 | 69275610 | ID=Msa1072260-mRNA-1:exon:15353;Parent=Msa1072260-mRNA-1 |
| chr7_2 | exon | 69276238 | 69276244 | 69276238 | ID=Msa1072260-mRNA-1:exon:15354;Parent=Msa1072260-mRNA-1 |
| chr7_2 | exon | 69278184 | 69278241 | 69278184 | ID=Msa1072260-mRNA-1:exon:15355;Parent=Msa1072260-mRNA-1 |
| chr7_2 | exon | 69278958 | 69279346 | 69278958 | ID=Msa1072260-mRNA-1:exon:15356;Parent=Msa1072260-mRNA-1 |
| chr7_2 | CDS | 69275610 | 69275616 | 69275610 | ID=Msa1072260-mRNA-1:cds;Parent=Msa1072260-mRNA-1 |
| chr7_2 | CDS | 69276238 | 69276244 | 69276238 | ID=Msa1072260-mRNA-1:cds;Parent=Msa1072260-mRNA-1 |
| chr7_2 | CDS | 69278184 | 69278241 | 69278184 | ID=Msa1072260-mRNA-1:cds;Parent=Msa1072260-mRNA-1 |
| chr7_2 | CDS | 69278958 | 69279239 | 69278958 | ID=Msa1072260-mRNA-1:cds;Parent=Msa1072260-mRNA-1 |
| chr7_2 | three_prime_UTR | 69279240 | 69279346 | 69279240 | ID=Msa1072260-mRNA-1:three_prime_utr;Parent=Msa1072260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
