Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072300 | XP_003624751.1 | 90.330 | 455 | 25 | 1 | 1 | 455 | 1 | 436 | 0.0 | 842 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072300 | sp|Q9FN79|BDG5_ARATH | 45.610 | 467 | 205 | 8 | 5 | 454 | 2 | 436 | 2.67e-137 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072300 | G7L2L1 | 90.330 | 455 | 25 | 1 | 1 | 455 | 1 | 436 | 0.0 | 842 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1072300 | Msa1118180 | 0.848891 | 4.588943e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072300 | MtrunA17_Chr7g0254351 | 90.330 | 455 | 25 | 1 | 1 | 455 | 1 | 436 | 0.0 | 842 |
| Msa1072300 | MtrunA17_Chr1g0189081 | 35.597 | 486 | 235 | 10 | 20 | 454 | 32 | 490 | 1.29e-106 | 325 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1072300 | AT5G17720.1 | 45.610 | 467 | 205 | 8 | 5 | 454 | 2 | 436 | 2.71e-138 | 404 |
| Msa1072300 | AT5G17780.2 | 46.925 | 439 | 196 | 7 | 23 | 455 | 12 | 419 | 1.38e-135 | 397 |
| Msa1072300 | AT5G17780.1 | 46.925 | 439 | 194 | 8 | 23 | 455 | 12 | 417 | 1.31e-134 | 394 |
| Msa1072300 | AT1G64670.1 | 35.000 | 480 | 238 | 9 | 20 | 452 | 5 | 457 | 1.40e-102 | 314 |
| Msa1072300 | AT1G64670.3 | 35.000 | 480 | 238 | 9 | 20 | 452 | 52 | 504 | 2.60e-102 | 315 |
| Msa1072300 | AT1G64670.2 | 35.000 | 480 | 238 | 9 | 20 | 452 | 60 | 512 | 2.90e-102 | 315 |
| Msa1072300 | AT5G41900.1 | 34.156 | 486 | 242 | 11 | 20 | 452 | 5 | 465 | 2.40e-96 | 298 |
| Msa1072300 | AT4G24140.1 | 32.347 | 507 | 241 | 13 | 22 | 454 | 17 | 495 | 4.68e-91 | 285 |
Find 101 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTTGTTGTTGCTCTAAA+TGG | 0.105119 | 7_2:+69335376 | Msa1072300:CDS |
| TTATGTGTTCTTCCTCATTT+TGG | 0.121606 | 7_2:+69336250 | Msa1072300:CDS |
| CAAGGATATATAAGTGTTTA+AGG | 0.166368 | 7_2:-69334986 | None:intergenic |
| AAGAACATGTTTAGAGAAAT+AGG | 0.194094 | 7_2:+69335465 | Msa1072300:CDS |
| TACAACTACCATACCTAATA+AGG | 0.219558 | 7_2:-69335646 | None:intergenic |
| CATCATTAAGTTGAAGTTAA+AGG | 0.220250 | 7_2:+69337607 | Msa1072300:CDS |
| ATTCATGATTAGTTATATAT+TGG | 0.232914 | 7_2:-69335036 | None:intergenic |
| TCATCTGGTTGCACACTCTA+TGG | 0.276171 | 7_2:+69336449 | Msa1072300:CDS |
| GCTATAGATCTGTTGGGATT+TGG | 0.300946 | 7_2:+69336330 | Msa1072300:CDS |
| GAAATAGGTTTGCTTCAATT+TGG | 0.301537 | 7_2:+69335480 | Msa1072300:CDS |
| ATTATGTTAATTTCAGCATT+TGG | 0.316822 | 7_2:-69337632 | None:intergenic |
| GTTGTTAAGGAACCCTTATT+AGG | 0.320952 | 7_2:+69335633 | Msa1072300:CDS |
| GATGTGAGTCTTGTCTTTCA+TGG | 0.339240 | 7_2:+69335574 | Msa1072300:CDS |
| TATGTCATGGTACGAGCATT+TGG | 0.343618 | 7_2:+69337077 | Msa1072300:CDS |
| AAAGCACTTGAAAAGTTTGC+TGG | 0.352230 | 7_2:+69337015 | Msa1072300:CDS |
| GAGCAAGTGGAAATGCGTTT+AGG | 0.380714 | 7_2:-69334932 | None:intergenic |
| TCCTTGTTGTTGCTCTAAAT+GGG | 0.383538 | 7_2:+69335377 | Msa1072300:CDS |
| CAGTGTAATTGCATTGGCTT+TGG | 0.392465 | 7_2:+69336473 | Msa1072300:CDS |
| GGAATTGAATGAAATGAAAT+TGG | 0.392886 | 7_2:+69337915 | Msa1072300:three_prime_UTR |
| TACAAACAATCTCTTGGCTT+TGG | 0.394547 | 7_2:-69336360 | None:intergenic |
| GAAGCAATTTGCACAAAGTC+TGG | 0.397626 | 7_2:+69337694 | Msa1072300:CDS |
| CACAAAGTCTGGAGCATACA+TGG | 0.399799 | 7_2:+69337705 | Msa1072300:CDS |
| GATCACAGCACCGTGCTATT+AGG | 0.400710 | 7_2:+69337665 | Msa1072300:CDS |
| TGTGATTTCTGCAATAGATT+AGG | 0.408283 | 7_2:-69337113 | None:intergenic |
| ATGTCATGGTACGAGCATTT+GGG | 0.409196 | 7_2:+69337078 | Msa1072300:CDS |
| AGAGAGGAAGAAGATTCTAA+TGG | 0.418267 | 7_2:+69335510 | Msa1072300:CDS |
| TAATTCTCATATTTAATCAA+TGG | 0.421860 | 7_2:-69337743 | None:intergenic |
| AGATTGTTTGTACACTTTGA+AGG | 0.424010 | 7_2:+69336371 | Msa1072300:CDS |
| GGAAGAAGAAGAAGTGATGA+TGG | 0.432915 | 7_2:-69334965 | None:intergenic |
| CTGGTTCTTCATTTATGTCA+TGG | 0.433000 | 7_2:+69337064 | Msa1072300:CDS |
| TACCTTGATGAACGCATTGA+TGG | 0.450597 | 7_2:+69335345 | Msa1072300:CDS |
| GTGGTTCAACCATTGCAGTT+AGG | 0.451583 | 7_2:+69336420 | Msa1072300:CDS |
| ATTGATTGCTATAGATCTGT+TGG | 0.452041 | 7_2:+69336323 | Msa1072300:CDS |
| TCTTGTCTTTCATGGGTGAA+TGG | 0.458063 | 7_2:+69335582 | Msa1072300:CDS |
| CATCTGGTTGCACACTCTAT+GGG | 0.468936 | 7_2:+69336450 | Msa1072300:CDS |
| AAAGTGTACAAACAATCTCT+TGG | 0.469127 | 7_2:-69336366 | None:intergenic |
| GTGGAAGGATATTGAAAAGT+TGG | 0.483453 | 7_2:+69335541 | Msa1072300:CDS |
| TTGATTGCTATAGATCTGTT+GGG | 0.484349 | 7_2:+69336324 | Msa1072300:CDS |
| TCCATGCATAATGTGATATG+TGG | 0.487596 | 7_2:+69337482 | Msa1072300:CDS |
| TGAATGAAATGAAATTGGTC+AGG | 0.492997 | 7_2:+69337920 | Msa1072300:three_prime_UTR |
| ATTGCAGAAATCACAGGATG+TGG | 0.498456 | 7_2:+69337121 | Msa1072300:CDS |
| CTAGAGACATTGAGTGGTAT+TGG | 0.499170 | 7_2:-69335194 | None:intergenic |
| ACTGGACATACTCATCAATC+AGG | 0.499834 | 7_2:+69337452 | Msa1072300:CDS |
| ACAACTACCATACCTAATAA+GGG | 0.502624 | 7_2:-69335645 | None:intergenic |
| TTTCAGATAGTTTGTATGAG+AGG | 0.502992 | 7_2:+69335442 | Msa1072300:CDS |
| AAGAAGAAGTGATGATGGAA+TGG | 0.509785 | 7_2:-69334960 | None:intergenic |
| TTGAAAAGTTGGTCTGATTG+TGG | 0.510895 | 7_2:+69335552 | Msa1072300:CDS |
| ATGTGAGTCTTGTCTTTCAT+GGG | 0.513620 | 7_2:+69335575 | Msa1072300:CDS |
| GACATACTCATCAATCAGGT+TGG | 0.522121 | 7_2:+69337456 | Msa1072300:CDS |
| TTGTGGCCAATGTTATCAGC+TGG | 0.524346 | 7_2:+69337045 | Msa1072300:CDS |
| CTTTCATGGGTGAATGGTGG+TGG | 0.529707 | 7_2:+69335588 | Msa1072300:CDS |
| AAGTGATGATGGAATGGAGA+GGG | 0.538465 | 7_2:-69334954 | None:intergenic |
| TATGGGCAGTGTAATTGCAT+TGG | 0.539095 | 7_2:+69336467 | Msa1072300:CDS |
| ACGGTGCTGTGATCTGCATT+TGG | 0.543013 | 7_2:-69337656 | None:intergenic |
| GAAGATTCTAATGGAAAATG+TGG | 0.545060 | 7_2:+69335519 | Msa1072300:CDS |
| GAAATCACAGGATGTGGGAG+AGG | 0.545446 | 7_2:+69337127 | Msa1072300:CDS |
| CCCCATCAATGCGTTCATCA+AGG | 0.550900 | 7_2:-69335347 | None:intergenic |
| GAGAATGTTATATTCTTGCA+CGG | 0.553203 | 7_2:+69336225 | Msa1072300:CDS |
| TGAACAAGCATCATTGCCCT+CGG | 0.553528 | 7_2:-69336992 | None:intergenic |
| TAAAGTTCATTACTCGCAAG+AGG | 0.555328 | 7_2:+69337154 | Msa1072300:CDS |
| TGGAATGGAGAGGGAGCAAG+TGG | 0.556754 | 7_2:-69334945 | None:intergenic |
| TTTGAGTCTAAGGTACTCAC+AGG | 0.564524 | 7_2:-69336540 | None:intergenic |
| ACCTTGATGAACGCATTGAT+GGG | 0.567521 | 7_2:+69335346 | Msa1072300:CDS |
| GCAGCCGTACTCTTCTTCCG+AGG | 0.574494 | 7_2:+69336975 | Msa1072300:intron |
| TAATCTATTGCAGAAATCAC+AGG | 0.576577 | 7_2:+69337115 | Msa1072300:CDS |
| CCCACATATCACATTATGCA+TGG | 0.577899 | 7_2:-69337483 | None:intergenic |
| CTTCTCTCTGCCTAATAGCA+CGG | 0.579766 | 7_2:-69337675 | None:intergenic |
| ATGGGAGAGACAGAAGAAGA+TGG | 0.581802 | 7_2:+69335395 | Msa1072300:CDS |
| CTAATGGAAAATGTGGTGGA+AGG | 0.582282 | 7_2:+69335526 | Msa1072300:CDS |
| CACTGTTTGAGTCCAAAATG+AGG | 0.584177 | 7_2:-69336262 | None:intergenic |
| AGTTTGCTGGAAAGAAATTG+TGG | 0.585913 | 7_2:+69337028 | Msa1072300:CDS |
| TTCTTGATAACAGACATGAC+TGG | 0.588836 | 7_2:+69337434 | Msa1072300:CDS |
| TAGAGATCAAGTTGTCTCAA+AGG | 0.590165 | 7_2:+69337580 | Msa1072300:CDS |
| GTTAAAATAAATGTTATACA+AGG | 0.593759 | 7_2:+69337554 | Msa1072300:CDS |
| GATTCTAATGGAAAATGTGG+TGG | 0.594988 | 7_2:+69335522 | Msa1072300:CDS |
| TTGCCCTCGGAAGAAGAGTA+CGG | 0.598092 | 7_2:-69336979 | None:intergenic |
| TGTCTTTCATGGGTGAATGG+TGG | 0.601295 | 7_2:+69335585 | Msa1072300:CDS |
| CAGCCGTACTCTTCTTCCGA+GGG | 0.605517 | 7_2:+69336976 | Msa1072300:intron |
| GTACACTTTGAAGGATCATG+TGG | 0.607082 | 7_2:+69336380 | Msa1072300:CDS |
| CATCAAGAAGATCAAAGATG+AGG | 0.610753 | 7_2:-69335299 | None:intergenic |
| GAAGAACCAGCTGATAACAT+TGG | 0.613682 | 7_2:-69337051 | None:intergenic |
| AGGTACTCACAGGTGCAACA+AGG | 0.615692 | 7_2:-69336530 | None:intergenic |
| AATCAATGGAACTTAGCAAG+AGG | 0.623576 | 7_2:-69337729 | None:intergenic |
| AGCCACTGGTGAAAACTGCA+AGG | 0.625095 | 7_2:+69336191 | Msa1072300:intron |
| TGAAAACTACCTAACTGCAA+TGG | 0.630112 | 7_2:-69336429 | None:intergenic |
| TTGCAGAAATCACAGGATGT+GGG | 0.630242 | 7_2:+69337122 | Msa1072300:CDS |
| GGTACTCACAGGTGCAACAA+GGG | 0.630789 | 7_2:-69336529 | None:intergenic |
| CCATGCATAATGTGATATGT+GGG | 0.638365 | 7_2:+69337483 | Msa1072300:CDS |
| TGATGAACGCATTGATGGGG+TGG | 0.639506 | 7_2:+69335350 | Msa1072300:CDS |
| GCCACTGGTGAAAACTGCAA+GGG | 0.643644 | 7_2:+69336192 | Msa1072300:intron |
| TTTAGAGCAACAACAAGGAG+AGG | 0.653335 | 7_2:-69335373 | None:intergenic |
| GAAGTGATGATGGAATGGAG+AGG | 0.661708 | 7_2:-69334955 | None:intergenic |
| ACAAAGTCTGGAGCATACAT+GGG | 0.662277 | 7_2:+69337706 | Msa1072300:CDS |
| TCCCATTTAGAGCAACAACA+AGG | 0.665324 | 7_2:-69335378 | None:intergenic |
| AGTACTACATCAAAGAGACA+AGG | 0.697104 | 7_2:-69335004 | None:intergenic |
| CCTTGATGAACGCATTGATG+GGG | 0.701791 | 7_2:+69335347 | Msa1072300:CDS |
| AAGAATATAACATTCTCACA+AGG | 0.714146 | 7_2:-69336219 | None:intergenic |
| CATGCATAATGTGATATGTG+GGG | 0.714654 | 7_2:+69337484 | Msa1072300:CDS |
| AAACTGCTAGAGACATTGAG+TGG | 0.716848 | 7_2:-69335200 | None:intergenic |
| GGAAATGATTGAGAAATCTG+TGG | 0.717663 | 7_2:+69336401 | Msa1072300:CDS |
| ATGCATAATGTGATATGTGG+GGG | 0.727700 | 7_2:+69337485 | Msa1072300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAATAAAAAAGAAAATT+AGG | - | chr7_2:69336940-69336959 | None:intergenic | 10.0% |
| !!! | ATTCATGATTAGTTATATAT+TGG | - | chr7_2:69335039-69335058 | None:intergenic | 15.0% |
| !! | AATAAGCTAAAAAAAGATTA+TGG | - | chr7_2:69335678-69335697 | None:intergenic | 15.0% |
| !!! | AAATAGTTTGACTTTATTAT+TGG | + | chr7_2:69335723-69335742 | Msa1072300:intron | 15.0% |
| !!! | TTCTTTTTTATTTCTTCTTA+TGG | + | chr7_2:69336944-69336963 | Msa1072300:intron | 15.0% |
| !!! | TTGAAAATTTTGACAAAAAA+TGG | + | chr7_2:69337530-69337549 | Msa1072300:CDS | 15.0% |
| !! | GTTAAAATAAATGTTATACA+AGG | + | chr7_2:69337554-69337573 | Msa1072300:CDS | 15.0% |
| !! | TAATTCTCATATTTAATCAA+TGG | - | chr7_2:69337746-69337765 | None:intergenic | 15.0% |
| !!! | TAAATATGAGAATTACTTTT+TGG | + | chr7_2:69337751-69337770 | Msa1072300:three_prime_UTR | 15.0% |
| !!! | TTGAATATATAATTTTTGAG+TGG | + | chr7_2:69337894-69337913 | Msa1072300:three_prime_UTR | 15.0% |
| !! | CATTAATAAAAACTAGAATC+TGG | + | chr7_2:69335158-69335177 | Msa1072300:five_prime_UTR | 20.0% |
| !!! | TAAACTTCATTTTGTTGTTA+AGG | + | chr7_2:69335620-69335639 | Msa1072300:CDS | 20.0% |
| !!! | ATTTTTATAACGAAAGACAT+AGG | - | chr7_2:69336011-69336030 | None:intergenic | 20.0% |
| !! | AAAAAGAAAAGAATCAAACA+AGG | - | chr7_2:69336105-69336124 | None:intergenic | 20.0% |
| !!! | TTTTGTGCTACATATTTTTT+TGG | + | chr7_2:69336654-69336673 | Msa1072300:intron | 20.0% |
| !!! | TTATGTTTTGATGTTTTTAC+TGG | + | chr7_2:69336735-69336754 | Msa1072300:intron | 20.0% |
| !!! | TATGTTTTGATGTTTTTACT+GGG | + | chr7_2:69336736-69336755 | Msa1072300:intron | 20.0% |
| !!! | TTTATTTCTTCTTATGGTTT+TGG | + | chr7_2:69336950-69336969 | Msa1072300:intron | 20.0% |
| !! | TATTATTGAGTGTAACTATA+TGG | + | chr7_2:69337285-69337304 | Msa1072300:intron | 20.0% |
| !! | ATTATTGAGTGTAACTATAT+GGG | + | chr7_2:69337286-69337305 | Msa1072300:intron | 20.0% |
| !! | ATTATGTTAATTTCAGCATT+TGG | - | chr7_2:69337635-69337654 | None:intergenic | 20.0% |
| !!! | AGAATTACTTTTTGGTAATT+TGG | + | chr7_2:69337759-69337778 | Msa1072300:three_prime_UTR | 20.0% |
| ! | CAAGGATATATAAGTGTTTA+AGG | - | chr7_2:69334989-69335008 | None:intergenic | 25.0% |
| !!! | CAATTGTTCATCCATTTTTT+TGG | - | chr7_2:69335240-69335259 | None:intergenic | 25.0% |
| ! | AAGAACATGTTTAGAGAAAT+AGG | + | chr7_2:69335465-69335484 | Msa1072300:CDS | 25.0% |
| !!! | CTTATTTTCATGAACTCTTT+AGG | + | chr7_2:69335692-69335711 | Msa1072300:intron | 25.0% |
| !! | TTGAGTTGTTTATTCAAACA+TGG | + | chr7_2:69335985-69336004 | Msa1072300:intron | 25.0% |
| ! | AAGAATATAACATTCTCACA+AGG | - | chr7_2:69336222-69336241 | None:intergenic | 25.0% |
| !! | TTTACATTTTCAGAGAAACA+TGG | - | chr7_2:69336291-69336310 | None:intergenic | 25.0% |
| !!! | GTGATTGATTTTACACAATT+GGG | - | chr7_2:69336510-69336529 | None:intergenic | 25.0% |
| !!! | TATATCTAGTTTTGAGTCTA+AGG | - | chr7_2:69336553-69336572 | None:intergenic | 25.0% |
| !!! | TTGCATTCAAGTTTTAAGAT+TGG | + | chr7_2:69336573-69336592 | Msa1072300:CDS | 25.0% |
| !!! | TTCAAGTTTTAAGATTGGAA+TGG | + | chr7_2:69336578-69336597 | Msa1072300:CDS | 25.0% |
| !! | GTTTATGACACAATTTTACT+CGG | - | chr7_2:69336824-69336843 | None:intergenic | 25.0% |
| !! | AATTAGGTGATATTTTCCAA+AGG | - | chr7_2:69336924-69336943 | None:intergenic | 25.0% |
| ! | GGTAATAACCATTTATTGAA+AGG | + | chr7_2:69337175-69337194 | Msa1072300:intron | 25.0% |
| !! | TATTTCTTTTTGCCTTTTTC+AGG | + | chr7_2:69337402-69337421 | Msa1072300:intron | 25.0% |
| !!! | ATTTCTTTTTGCCTTTTTCA+GGG | + | chr7_2:69337403-69337422 | Msa1072300:intron | 25.0% |
| !!! | CATCATTAAGTTGAAGTTAA+AGG | + | chr7_2:69337607-69337626 | Msa1072300:CDS | 25.0% |
| ! | GGAATTGAATGAAATGAAAT+TGG | + | chr7_2:69337915-69337934 | Msa1072300:three_prime_UTR | 25.0% |
| ! | TTTCAGATAGTTTGTATGAG+AGG | + | chr7_2:69335442-69335461 | Msa1072300:CDS | 30.0% |
| ! | GAAATAGGTTTGCTTCAATT+TGG | + | chr7_2:69335480-69335499 | Msa1072300:CDS | 30.0% |
| TCAATTTGGTAGAAAAAGAG+AGG | + | chr7_2:69335494-69335513 | Msa1072300:CDS | 30.0% | |
| GAAGATTCTAATGGAAAATG+TGG | + | chr7_2:69335519-69335538 | Msa1072300:CDS | 30.0% | |
| ACAACTACCATACCTAATAA+GGG | - | chr7_2:69335648-69335667 | None:intergenic | 30.0% | |
| TACAACTACCATACCTAATA+AGG | - | chr7_2:69335649-69335668 | None:intergenic | 30.0% | |
| !! | GACTTTATTATTGGCTTGTT+TGG | + | chr7_2:69335732-69335751 | Msa1072300:intron | 30.0% |
| ACTTATTTGAGCTTATCTAG+TGG | + | chr7_2:69335759-69335778 | Msa1072300:intron | 30.0% | |
| ! | TAAGCATTTGTGTTACTGTT+TGG | + | chr7_2:69335784-69335803 | Msa1072300:intron | 30.0% |
| CTTTAACAAGCTCTTCATAA+TGG | + | chr7_2:69335858-69335877 | Msa1072300:intron | 30.0% | |
| AAGAATCAAACAAGGTTGTT+TGG | - | chr7_2:69336097-69336116 | None:intergenic | 30.0% | |
| AATGCATTCTTAAGTGTAAC+TGG | + | chr7_2:69336138-69336157 | Msa1072300:intron | 30.0% | |
| !!! | TGTAACTGGTTTTGATATTG+TGG | + | chr7_2:69336152-69336171 | Msa1072300:intron | 30.0% |
| ! | AATTTCTATTTTACAGCCAC+TGG | + | chr7_2:69336177-69336196 | Msa1072300:intron | 30.0% |
| GAGAATGTTATATTCTTGCA+CGG | + | chr7_2:69336225-69336244 | Msa1072300:CDS | 30.0% | |
| ! | TTATGTGTTCTTCCTCATTT+TGG | + | chr7_2:69336250-69336269 | Msa1072300:CDS | 30.0% |
| ATTGATTGCTATAGATCTGT+TGG | + | chr7_2:69336323-69336342 | Msa1072300:CDS | 30.0% | |
| TTGATTGCTATAGATCTGTT+GGG | + | chr7_2:69336324-69336343 | Msa1072300:CDS | 30.0% | |
| AAAGTGTACAAACAATCTCT+TGG | - | chr7_2:69336369-69336388 | None:intergenic | 30.0% | |
| AGATTGTTTGTACACTTTGA+AGG | + | chr7_2:69336371-69336390 | Msa1072300:CDS | 30.0% | |
| !! | GGTGATTGATTTTACACAAT+TGG | - | chr7_2:69336511-69336530 | None:intergenic | 30.0% |
| TAGCACAAAAGTTTCCAATA+TGG | + | chr7_2:69336605-69336624 | Msa1072300:intron | 30.0% | |
| GTTCATAGTATGAACCATAT+TGG | - | chr7_2:69336622-69336641 | None:intergenic | 30.0% | |
| GTTCATACTATGAACCATAT+TGG | + | chr7_2:69336627-69336646 | Msa1072300:intron | 30.0% | |
| TAGCACAAAAGTTTCCAATA+TGG | - | chr7_2:69336605-69336624 | None:intergenic | 30.0% | |
| !!! | ATTTCTTCTTATGGTTTTGG+TGG | + | chr7_2:69336953-69336972 | Msa1072300:intron | 30.0% |
| TGTGATTTCTGCAATAGATT+AGG | - | chr7_2:69337116-69337135 | None:intergenic | 30.0% | |
| TAATCTATTGCAGAAATCAC+AGG | + | chr7_2:69337115-69337134 | Msa1072300:CDS | 30.0% | |
| CAATAGAGCCTTTCAATAAA+TGG | - | chr7_2:69337186-69337205 | None:intergenic | 30.0% | |
| !! | TTTTTGGTAATTTGGAGACA+TGG | + | chr7_2:69337767-69337786 | Msa1072300:three_prime_UTR | 30.0% |
| TGAATGAAATGAAATTGGTC+AGG | + | chr7_2:69337920-69337939 | Msa1072300:three_prime_UTR | 30.0% | |
| !! | AAGAAGAAGTGATGATGGAA+TGG | - | chr7_2:69334963-69334982 | None:intergenic | 35.0% |
| AGTACTACATCAAAGAGACA+AGG | - | chr7_2:69335007-69335026 | None:intergenic | 35.0% | |
| CATCAAGAAGATCAAAGATG+AGG | - | chr7_2:69335302-69335321 | None:intergenic | 35.0% | |
| !! | TCCTTGTTGTTGCTCTAAAT+GGG | + | chr7_2:69335377-69335396 | Msa1072300:CDS | 35.0% |
| AGAGAGGAAGAAGATTCTAA+TGG | + | chr7_2:69335510-69335529 | Msa1072300:CDS | 35.0% | |
| GATTCTAATGGAAAATGTGG+TGG | + | chr7_2:69335522-69335541 | Msa1072300:CDS | 35.0% | |
| GTGGAAGGATATTGAAAAGT+TGG | + | chr7_2:69335541-69335560 | Msa1072300:CDS | 35.0% | |
| ! | TTGAAAAGTTGGTCTGATTG+TGG | + | chr7_2:69335552-69335571 | Msa1072300:CDS | 35.0% |
| ! | ATGTGAGTCTTGTCTTTCAT+GGG | + | chr7_2:69335575-69335594 | Msa1072300:CDS | 35.0% |
| GTTGTTAAGGAACCCTTATT+AGG | + | chr7_2:69335633-69335652 | Msa1072300:CDS | 35.0% | |
| TAAGGAACCCTTATTAGGTA+TGG | + | chr7_2:69335638-69335657 | Msa1072300:intron | 35.0% | |
| TACAAACAATCTCTTGGCTT+TGG | - | chr7_2:69336363-69336382 | None:intergenic | 35.0% | |
| GGAAATGATTGAGAAATCTG+TGG | + | chr7_2:69336401-69336420 | Msa1072300:CDS | 35.0% | |
| TGAAAACTACCTAACTGCAA+TGG | - | chr7_2:69336432-69336451 | None:intergenic | 35.0% | |
| ! | AAAGCACTTGAAAAGTTTGC+TGG | + | chr7_2:69337015-69337034 | Msa1072300:CDS | 35.0% |
| !! | AGTTTGCTGGAAAGAAATTG+TGG | + | chr7_2:69337028-69337047 | Msa1072300:CDS | 35.0% |
| ! | CTGGTTCTTCATTTATGTCA+TGG | + | chr7_2:69337064-69337083 | Msa1072300:CDS | 35.0% |
| TAAAGTTCATTACTCGCAAG+AGG | + | chr7_2:69337154-69337173 | Msa1072300:CDS | 35.0% | |
| GACATTGTCATTGTCATATC+CGG | - | chr7_2:69337227-69337246 | None:intergenic | 35.0% | |
| ACTTTAGATTCAAGGTGTGT+CGG | - | chr7_2:69337330-69337349 | None:intergenic | 35.0% | |
| GAAACTAAGATCCCTGAAAA+AGG | - | chr7_2:69337417-69337436 | None:intergenic | 35.0% | |
| ! | TTCTTGATAACAGACATGAC+TGG | + | chr7_2:69337434-69337453 | Msa1072300:CDS | 35.0% |
| TCCATGCATAATGTGATATG+TGG | + | chr7_2:69337482-69337501 | Msa1072300:CDS | 35.0% | |
| CCATGCATAATGTGATATGT+GGG | + | chr7_2:69337483-69337502 | Msa1072300:CDS | 35.0% | |
| CATGCATAATGTGATATGTG+GGG | + | chr7_2:69337484-69337503 | Msa1072300:CDS | 35.0% | |
| ATGCATAATGTGATATGTGG+GGG | + | chr7_2:69337485-69337504 | Msa1072300:CDS | 35.0% | |
| ! | TAGAGATCAAGTTGTCTCAA+AGG | + | chr7_2:69337580-69337599 | Msa1072300:CDS | 35.0% |
| AATCAATGGAACTTAGCAAG+AGG | - | chr7_2:69337732-69337751 | None:intergenic | 35.0% | |
| !! | AAGTGATGATGGAATGGAGA+GGG | - | chr7_2:69334957-69334976 | None:intergenic | 40.0% |
| GGAAGAAGAAGAAGTGATGA+TGG | - | chr7_2:69334968-69334987 | None:intergenic | 40.0% | |
| CTAGAGACATTGAGTGGTAT+TGG | - | chr7_2:69335197-69335216 | None:intergenic | 40.0% | |
| AAACTGCTAGAGACATTGAG+TGG | - | chr7_2:69335203-69335222 | None:intergenic | 40.0% | |
| !!! | CATCCATTTTTTTGGTGAGC+AGG | - | chr7_2:69335232-69335251 | None:intergenic | 40.0% |
| TACCTTGATGAACGCATTGA+TGG | + | chr7_2:69335345-69335364 | Msa1072300:CDS | 40.0% | |
| ! | ACCTTGATGAACGCATTGAT+GGG | + | chr7_2:69335346-69335365 | Msa1072300:CDS | 40.0% |
| ! | TTTAGAGCAACAACAAGGAG+AGG | - | chr7_2:69335376-69335395 | None:intergenic | 40.0% |
| !! | CTCCTTGTTGTTGCTCTAAA+TGG | + | chr7_2:69335376-69335395 | Msa1072300:CDS | 40.0% |
| ! | TCCCATTTAGAGCAACAACA+AGG | - | chr7_2:69335381-69335400 | None:intergenic | 40.0% |
| ! | CTAATGGAAAATGTGGTGGA+AGG | + | chr7_2:69335526-69335545 | Msa1072300:CDS | 40.0% |
| ! | GATGTGAGTCTTGTCTTTCA+TGG | + | chr7_2:69335574-69335593 | Msa1072300:CDS | 40.0% |
| TCTTGTCTTTCATGGGTGAA+TGG | + | chr7_2:69335582-69335601 | Msa1072300:CDS | 40.0% | |
| CACTGTTTGAGTCCAAAATG+AGG | - | chr7_2:69336265-69336284 | None:intergenic | 40.0% | |
| GCTATAGATCTGTTGGGATT+TGG | + | chr7_2:69336330-69336349 | Msa1072300:CDS | 40.0% | |
| ! | GTACACTTTGAAGGATCATG+TGG | + | chr7_2:69336380-69336399 | Msa1072300:CDS | 40.0% |
| ! | GCAGTTAGGTAGTTTTCATC+TGG | + | chr7_2:69336434-69336453 | Msa1072300:CDS | 40.0% |
| TATGGGCAGTGTAATTGCAT+TGG | + | chr7_2:69336467-69336486 | Msa1072300:CDS | 40.0% | |
| !! | CAGTGTAATTGCATTGGCTT+TGG | + | chr7_2:69336473-69336492 | Msa1072300:CDS | 40.0% |
| ! | TTTGAGTCTAAGGTACTCAC+AGG | - | chr7_2:69336543-69336562 | None:intergenic | 40.0% |
| ! | GTTTTTACTGGGCCAAAACT+TGG | + | chr7_2:69336747-69336766 | Msa1072300:intron | 40.0% |
| ! | TTGCATGTGACACCAAGTTT+TGG | - | chr7_2:69336762-69336781 | None:intergenic | 40.0% |
| GAAGAACCAGCTGATAACAT+TGG | - | chr7_2:69337054-69337073 | None:intergenic | 40.0% | |
| TATGTCATGGTACGAGCATT+TGG | + | chr7_2:69337077-69337096 | Msa1072300:CDS | 40.0% | |
| ATGTCATGGTACGAGCATTT+GGG | + | chr7_2:69337078-69337097 | Msa1072300:CDS | 40.0% | |
| ATTGCAGAAATCACAGGATG+TGG | + | chr7_2:69337121-69337140 | Msa1072300:CDS | 40.0% | |
| TTGCAGAAATCACAGGATGT+GGG | + | chr7_2:69337122-69337141 | Msa1072300:CDS | 40.0% | |
| GTAAAAGACACAACACACAC+CGG | + | chr7_2:69337205-69337224 | Msa1072300:intron | 40.0% | |
| ! | GCACTGACACTTTAGATTCA+AGG | - | chr7_2:69337338-69337357 | None:intergenic | 40.0% |
| ACTGGACATACTCATCAATC+AGG | + | chr7_2:69337452-69337471 | Msa1072300:CDS | 40.0% | |
| GACATACTCATCAATCAGGT+TGG | + | chr7_2:69337456-69337475 | Msa1072300:CDS | 40.0% | |
| CCCACATATCACATTATGCA+TGG | - | chr7_2:69337486-69337505 | None:intergenic | 40.0% | |
| GAAGCAATTTGCACAAAGTC+TGG | + | chr7_2:69337694-69337713 | Msa1072300:CDS | 40.0% | |
| ! | ACAAAGTCTGGAGCATACAT+GGG | + | chr7_2:69337706-69337725 | Msa1072300:CDS | 40.0% |
| GAGCAAGTGGAAATGCGTTT+AGG | - | chr7_2:69334935-69334954 | None:intergenic | 45.0% | |
| !! | GAAGTGATGATGGAATGGAG+AGG | - | chr7_2:69334958-69334977 | None:intergenic | 45.0% |
| !!! | CCATTTTTTTGGTGAGCAGG+AGG | - | chr7_2:69335229-69335248 | None:intergenic | 45.0% |
| CCTCCTGCTCACCAAAAAAA+TGG | + | chr7_2:69335226-69335245 | Msa1072300:CDS | 45.0% | |
| ! | CCTTGATGAACGCATTGATG+GGG | + | chr7_2:69335347-69335366 | Msa1072300:CDS | 45.0% |
| ATGGGAGAGACAGAAGAAGA+TGG | + | chr7_2:69335395-69335414 | Msa1072300:CDS | 45.0% | |
| TGTCTTTCATGGGTGAATGG+TGG | + | chr7_2:69335585-69335604 | Msa1072300:CDS | 45.0% | |
| GTGGTTCAACCATTGCAGTT+AGG | + | chr7_2:69336420-69336439 | Msa1072300:CDS | 45.0% | |
| TCATCTGGTTGCACACTCTA+TGG | + | chr7_2:69336449-69336468 | Msa1072300:CDS | 45.0% | |
| CATCTGGTTGCACACTCTAT+GGG | + | chr7_2:69336450-69336469 | Msa1072300:CDS | 45.0% | |
| TCAGACACACACTTTGCCTT+TGG | + | chr7_2:69336905-69336924 | Msa1072300:intron | 45.0% | |
| TGAACAAGCATCATTGCCCT+CGG | - | chr7_2:69336995-69337014 | None:intergenic | 45.0% | |
| TTGTGGCCAATGTTATCAGC+TGG | + | chr7_2:69337045-69337064 | Msa1072300:CDS | 45.0% | |
| GTCAGTGCTAGCATAATGTG+AGG | + | chr7_2:69337350-69337369 | Msa1072300:intron | 45.0% | |
| AGTGCTAGCATAATGTGAGG+CGG | + | chr7_2:69337353-69337372 | Msa1072300:intron | 45.0% | |
| ATGTGGGGGAGCAAAATTCA+TGG | + | chr7_2:69337499-69337518 | Msa1072300:CDS | 45.0% | |
| CTTCTCTCTGCCTAATAGCA+CGG | - | chr7_2:69337678-69337697 | None:intergenic | 45.0% | |
| ! | CACAAAGTCTGGAGCATACA+TGG | + | chr7_2:69337705-69337724 | Msa1072300:CDS | 45.0% |
| CCCCATCAATGCGTTCATCA+AGG | - | chr7_2:69335350-69335369 | None:intergenic | 50.0% | |
| ! | TGATGAACGCATTGATGGGG+TGG | + | chr7_2:69335350-69335369 | Msa1072300:CDS | 50.0% |
| CTTTCATGGGTGAATGGTGG+TGG | + | chr7_2:69335588-69335607 | Msa1072300:CDS | 50.0% | |
| AGCCACTGGTGAAAACTGCA+AGG | + | chr7_2:69336191-69336210 | Msa1072300:intron | 50.0% | |
| GCCACTGGTGAAAACTGCAA+GGG | + | chr7_2:69336192-69336211 | Msa1072300:intron | 50.0% | |
| ! | TCCCTTGCAGTTTTCACCAG+TGG | - | chr7_2:69336196-69336215 | None:intergenic | 50.0% |
| GGTACTCACAGGTGCAACAA+GGG | - | chr7_2:69336532-69336551 | None:intergenic | 50.0% | |
| AGGTACTCACAGGTGCAACA+AGG | - | chr7_2:69336533-69336552 | None:intergenic | 50.0% | |
| TTGCCCTCGGAAGAAGAGTA+CGG | - | chr7_2:69336982-69337001 | None:intergenic | 50.0% | |
| GAAATCACAGGATGTGGGAG+AGG | + | chr7_2:69337127-69337146 | Msa1072300:CDS | 50.0% | |
| GTGCTAGCATAATGTGAGGC+GGG | + | chr7_2:69337354-69337373 | Msa1072300:intron | 50.0% | |
| !! | ACGGTGCTGTGATCTGCATT+TGG | - | chr7_2:69337659-69337678 | None:intergenic | 50.0% |
| ! | GATCACAGCACCGTGCTATT+AGG | + | chr7_2:69337665-69337684 | Msa1072300:CDS | 50.0% |
| TGGAATGGAGAGGGAGCAAG+TGG | - | chr7_2:69334948-69334967 | None:intergenic | 55.0% | |
| CAGCCGTACTCTTCTTCCGA+GGG | + | chr7_2:69336976-69336995 | Msa1072300:intron | 55.0% | |
| GCAGCCGTACTCTTCTTCCG+AGG | + | chr7_2:69336975-69336994 | Msa1072300:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 69334926 | 69337956 | 69334926 | ID=Msa1072300;Name=Msa1072300 |
| chr7_2 | mRNA | 69334926 | 69337956 | 69334926 | ID=Msa1072300-mRNA-1;Parent=Msa1072300;Name=Msa1072300-mRNA-1;_AED=0.03;_eAED=0.03;_QI=281|0.66|0.75|1|1|1|4|217|455 |
| chr7_2 | exon | 69334926 | 69335654 | 69334926 | ID=Msa1072300-mRNA-1:exon:15367;Parent=Msa1072300-mRNA-1 |
| chr7_2 | exon | 69336193 | 69336599 | 69336193 | ID=Msa1072300-mRNA-1:exon:15368;Parent=Msa1072300-mRNA-1 |
| chr7_2 | exon | 69336979 | 69337175 | 69336979 | ID=Msa1072300-mRNA-1:exon:15369;Parent=Msa1072300-mRNA-1 |
| chr7_2 | exon | 69337424 | 69337956 | 69337424 | ID=Msa1072300-mRNA-1:exon:15370;Parent=Msa1072300-mRNA-1 |
| chr7_2 | five_prime_UTR | 69334926 | 69335206 | 69334926 | ID=Msa1072300-mRNA-1:five_prime_utr;Parent=Msa1072300-mRNA-1 |
| chr7_2 | CDS | 69335207 | 69335654 | 69335207 | ID=Msa1072300-mRNA-1:cds;Parent=Msa1072300-mRNA-1 |
| chr7_2 | CDS | 69336193 | 69336599 | 69336193 | ID=Msa1072300-mRNA-1:cds;Parent=Msa1072300-mRNA-1 |
| chr7_2 | CDS | 69336979 | 69337175 | 69336979 | ID=Msa1072300-mRNA-1:cds;Parent=Msa1072300-mRNA-1 |
| chr7_2 | CDS | 69337424 | 69337739 | 69337424 | ID=Msa1072300-mRNA-1:cds;Parent=Msa1072300-mRNA-1 |
| chr7_2 | three_prime_UTR | 69337740 | 69337956 | 69337740 | ID=Msa1072300-mRNA-1:three_prime_utr;Parent=Msa1072300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
