Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118180 | XP_003624751.1 | 90.330 | 455 | 25 | 1 | 1 | 455 | 1 | 436 | 0.0 | 844 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118180 | sp|Q9FN79|BDG5_ARATH | 46.039 | 467 | 203 | 9 | 5 | 454 | 2 | 436 | 3.20e-138 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118180 | G7L2L1 | 90.330 | 455 | 25 | 1 | 1 | 455 | 1 | 436 | 0.0 | 844 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0619480 | Msa1118180 | 0.846579 | 1.988421e-59 | -8.615850e-47 |
| Msa0659640 | Msa1118180 | 0.839873 | 1.221181e-57 | -8.615850e-47 |
| Msa0665010 | Msa1118180 | 0.802969 | 4.358411e-49 | -8.615850e-47 |
| Msa0677110 | Msa1118180 | 0.806094 | 9.718361e-50 | -8.615850e-47 |
| Msa0736330 | Msa1118180 | 0.823449 | 1.376679e-53 | -8.615850e-47 |
| Msa0138380 | Msa1118180 | 0.805926 | 1.054561e-49 | -8.615850e-47 |
| Msa0201910 | Msa1118180 | 0.803736 | 3.023438e-49 | -8.615850e-47 |
| Msa0216010 | Msa1118180 | 0.810955 | 8.912773e-51 | -8.615850e-47 |
| Msa0377690 | Msa1118180 | 0.824578 | 7.481172e-54 | -8.615850e-47 |
| Msa0426990 | Msa1118180 | 0.802996 | 4.303892e-49 | -8.615850e-47 |
| Msa0443250 | Msa1118180 | 0.806856 | 6.713213e-50 | -8.615850e-47 |
| Msa1072300 | Msa1118180 | 0.848891 | 4.588943e-60 | -8.615850e-47 |
| Msa0240460 | Msa1118180 | 0.808318 | 3.284696e-50 | -8.615850e-47 |
| Msa1118180 | Msa1159310 | 0.903046 | 5.194481e-79 | -8.615850e-47 |
| Msa1118180 | Msa1252040 | 0.813964 | 1.960111e-51 | -8.615850e-47 |
| Msa1118180 | Msa1264230 | 0.816516 | 5.311359e-52 | -8.615850e-47 |
| Msa1118180 | Msa1302920 | 0.826643 | 2.424483e-54 | -8.615850e-47 |
| Msa1118180 | Msa1343540 | 0.835232 | 1.891127e-56 | -8.615850e-47 |
| Msa1118180 | Msa1351560 | 0.821902 | 3.153694e-53 | -8.615850e-47 |
| Msa1118180 | Msa1385940 | 0.812132 | 4.944778e-51 | -8.615850e-47 |
| Msa0574230 | Msa1118180 | 0.809675 | 1.682811e-50 | -8.615850e-47 |
| Msa0576510 | Msa1118180 | 0.803908 | 2.784857e-49 | -8.615850e-47 |
| Msa0587060 | Msa1118180 | 0.804735 | 1.872903e-49 | -8.615850e-47 |
| Msa0855490 | Msa1118180 | 0.810351 | 1.203601e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118180 | MtrunA17_Chr7g0254351 | 90.330 | 455 | 25 | 1 | 1 | 455 | 1 | 436 | 0.0 | 844 |
| Msa1118180 | MtrunA17_Chr1g0189081 | 35.802 | 486 | 234 | 10 | 20 | 454 | 32 | 490 | 1.43e-106 | 325 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118180 | AT5G17720.1 | 46.039 | 467 | 203 | 9 | 5 | 454 | 2 | 436 | 3.26e-139 | 407 |
| Msa1118180 | AT5G17780.2 | 47.380 | 439 | 194 | 7 | 23 | 455 | 12 | 419 | 1.74e-137 | 402 |
| Msa1118180 | AT5G17780.1 | 47.380 | 439 | 192 | 8 | 23 | 455 | 12 | 417 | 2.96e-136 | 398 |
| Msa1118180 | AT1G64670.1 | 35.000 | 480 | 238 | 10 | 20 | 452 | 5 | 457 | 1.58e-102 | 314 |
| Msa1118180 | AT1G64670.2 | 35.000 | 480 | 238 | 10 | 20 | 452 | 60 | 512 | 3.23e-102 | 315 |
| Msa1118180 | AT1G64670.3 | 35.000 | 480 | 238 | 10 | 20 | 452 | 52 | 504 | 3.59e-102 | 315 |
| Msa1118180 | AT5G41900.1 | 33.745 | 486 | 244 | 10 | 20 | 452 | 5 | 465 | 1.74e-96 | 298 |
| Msa1118180 | AT4G24140.1 | 32.150 | 507 | 242 | 13 | 22 | 454 | 17 | 495 | 1.03e-90 | 284 |
Find 99 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTTGTTGTTGCTCTAAA+TGG | 0.105119 | 7_3:-66766893 | Msa1118180:CDS |
| TTATGTGTTCTTCCTCATTT+TGG | 0.121606 | 7_3:-66766001 | Msa1118180:CDS |
| ATTATGTTAATTTCAGTATT+TGG | 0.149177 | 7_3:+66764715 | None:intergenic |
| CAAGGATATATAAGTGTTTA+AGG | 0.166368 | 7_3:+66767283 | None:intergenic |
| AAGAACATGTTTAGAGAAAT+AGG | 0.194094 | 7_3:-66766804 | Msa1118180:CDS |
| TACAACTACCATACCTAATA+AGG | 0.219558 | 7_3:+66766623 | None:intergenic |
| CATCATTAAGTTGAAGTTAA+AGG | 0.220250 | 7_3:-66764740 | Msa1118180:CDS |
| TCATCTGGTTGCACACTCTA+TGG | 0.276171 | 7_3:-66765802 | Msa1118180:CDS |
| GCTATAGACCTGTTGGGATT+TGG | 0.300946 | 7_3:-66765921 | Msa1118180:CDS |
| GAAATAGGTTTGCTTCAATT+TGG | 0.301537 | 7_3:-66766789 | Msa1118180:CDS |
| GTTGTTAAGGAACCCTTATT+AGG | 0.320952 | 7_3:-66766636 | Msa1118180:intron |
| GATGTGAGTCTTGTCTTTCA+TGG | 0.339240 | 7_3:-66766695 | Msa1118180:CDS |
| TATGTCATGGTACGAGCATT+TGG | 0.343618 | 7_3:-66765214 | Msa1118180:CDS |
| AAAGCACTTGAAAAGTTTGC+TGG | 0.352230 | 7_3:-66765276 | Msa1118180:CDS |
| ACTTAATGATGCACTCCTTT+GGG | 0.362108 | 7_3:+66764752 | None:intergenic |
| AACTTAATGATGCACTCCTT+TGG | 0.368252 | 7_3:+66764751 | None:intergenic |
| GAGCAAGTGGAAATGCGTTT+AGG | 0.380714 | 7_3:+66767334 | None:intergenic |
| TCCTTGTTGTTGCTCTAAAT+GGG | 0.383538 | 7_3:-66766892 | Msa1118180:CDS |
| GATCACAGCACTGTGCTATT+AGG | 0.387386 | 7_3:-66764682 | Msa1118180:CDS |
| CAGTGTAATTGCATTGGCTT+TGG | 0.392465 | 7_3:-66765778 | Msa1118180:CDS |
| GACTCTTTCCAAATCCCAAC+AGG | 0.393861 | 7_3:+66765913 | None:intergenic |
| TACAAACAATCTCTTGGCTT+TGG | 0.394547 | 7_3:+66765891 | None:intergenic |
| GAAGCAATTTGCACAAAGTC+TGG | 0.397626 | 7_3:-66764653 | Msa1118180:CDS |
| GGAACTGAATGAAATGAAAT+TGG | 0.402756 | 7_3:-66764431 | Msa1118180:three_prime_UTR |
| TGTGATTTCTGCAATAGATT+AGG | 0.408283 | 7_3:+66765178 | None:intergenic |
| ATGTCATGGTACGAGCATTT+GGG | 0.409196 | 7_3:-66765213 | Msa1118180:CDS |
| AGAGAGGAAGAAGATTCTAA+TGG | 0.418267 | 7_3:-66766759 | Msa1118180:CDS |
| AAATTCTCATATTTAATCAA+TGG | 0.421450 | 7_3:+66764604 | None:intergenic |
| AGATTGTTTGTACACTTTGA+AGG | 0.424010 | 7_3:-66765880 | Msa1118180:CDS |
| CTGGTTCTTCATTTATGTCA+TGG | 0.433000 | 7_3:-66765227 | Msa1118180:CDS |
| TACCTTGATGAACGCATTGA+TGG | 0.450597 | 7_3:-66766924 | Msa1118180:CDS |
| GTGGTTCAACCATTGCAGTT+AGG | 0.451583 | 7_3:-66765831 | Msa1118180:CDS |
| TCTTGTCTTTCATGGGTGAA+TGG | 0.458063 | 7_3:-66766687 | Msa1118180:CDS |
| CATCTGGTTGCACACTCTAT+GGG | 0.468936 | 7_3:-66765801 | Msa1118180:CDS |
| AAAGTGTACAAACAATCTCT+TGG | 0.469127 | 7_3:+66765885 | None:intergenic |
| TTGATTGCTATAGACCTGTT+GGG | 0.476348 | 7_3:-66765927 | Msa1118180:CDS |
| CACAAAGTCTGGAGCATGCA+TGG | 0.487582 | 7_3:-66764642 | Msa1118180:CDS |
| TCCATGCATAATGTGATATG+TGG | 0.487596 | 7_3:-66764865 | Msa1118180:CDS |
| ATTGCAGAAATCACAGGATG+TGG | 0.498456 | 7_3:-66765170 | Msa1118180:CDS |
| CTAGAGACATTGAATGGTAT+TGG | 0.499049 | 7_3:+66767075 | None:intergenic |
| ACTGGACATACTCATCAATC+AGG | 0.499834 | 7_3:-66764895 | Msa1118180:CDS |
| ACAACTACCATACCTAATAA+GGG | 0.502624 | 7_3:+66766624 | None:intergenic |
| TTTCAGATAGTTTGTATGAG+AGG | 0.502992 | 7_3:-66766827 | Msa1118180:CDS |
| ATGTGAGTCTTGTCTTTCAT+GGG | 0.513620 | 7_3:-66766694 | Msa1118180:CDS |
| ATTGATTGCTATAGACCTGT+TGG | 0.519702 | 7_3:-66765928 | Msa1118180:CDS |
| GACATACTCATCAATCAGGT+TGG | 0.522121 | 7_3:-66764891 | Msa1118180:CDS |
| TTGTGGCCAATGTTATCAGC+TGG | 0.524346 | 7_3:-66765246 | Msa1118180:CDS |
| CTTTCATGGGTGAATGGTGG+TGG | 0.529707 | 7_3:-66766681 | Msa1118180:CDS |
| ACAGTGCTGTGATCTGCATT+TGG | 0.538453 | 7_3:+66764691 | None:intergenic |
| TATGGGCAGTGTAATTGCAT+TGG | 0.539095 | 7_3:-66765784 | Msa1118180:CDS |
| GTGGAAGGATAGTGAAAAGT+TGG | 0.541215 | 7_3:-66766728 | Msa1118180:CDS |
| GTGAAAAGTTGGTCTGATTG+TGG | 0.541770 | 7_3:-66766717 | Msa1118180:CDS |
| GAAGATTCTAATGGAAAATG+TGG | 0.545060 | 7_3:-66766750 | Msa1118180:CDS |
| GAAATCACAGGATGTGGGAG+AGG | 0.545446 | 7_3:-66765164 | Msa1118180:CDS |
| CCCCATCAATGCGTTCATCA+AGG | 0.550900 | 7_3:+66766922 | None:intergenic |
| TGAACAAGCATCATTGCCCT+CGG | 0.553528 | 7_3:+66765299 | None:intergenic |
| TAAAGTTCATTACTCGCAAG+AGG | 0.555328 | 7_3:-66765137 | Msa1118180:intron |
| TGGAATGGAGAGGGAGCAAG+TGG | 0.556037 | 7_3:+66767321 | None:intergenic |
| TTTGAGTCTAAGGTACTCAC+AGG | 0.564524 | 7_3:+66765711 | None:intergenic |
| ACCTTGATGAACGCATTGAT+GGG | 0.567521 | 7_3:-66766923 | Msa1118180:CDS |
| GAGAATGTTATATTCTTGCA+TGG | 0.571660 | 7_3:-66766026 | Msa1118180:CDS |
| GCAGCCGTACTCTTCTTCCG+AGG | 0.574494 | 7_3:-66765316 | Msa1118180:intron |
| TAATCTATTGCAGAAATCAC+AGG | 0.576577 | 7_3:-66765176 | Msa1118180:CDS |
| CCCACATATCACATTATGCA+TGG | 0.577899 | 7_3:+66764864 | None:intergenic |
| ATGGGAGAGACAGAAGAAGA+TGG | 0.581802 | 7_3:-66766874 | Msa1118180:CDS |
| CTAATGGAAAATGTGGTGGA+AGG | 0.582282 | 7_3:-66766743 | Msa1118180:CDS |
| CACTGTTTGAGTCCAAAATG+AGG | 0.584177 | 7_3:+66765989 | None:intergenic |
| AGTTTGCTGGAAAGAAATTG+TGG | 0.585913 | 7_3:-66765263 | Msa1118180:CDS |
| TTCTTGATAACAGACATGAC+TGG | 0.588836 | 7_3:-66764913 | Msa1118180:CDS |
| GTTAAAATAAATGTTATACA+AGG | 0.593759 | 7_3:-66764793 | Msa1118180:CDS |
| GATTCTAATGGAAAATGTGG+TGG | 0.594988 | 7_3:-66766747 | Msa1118180:CDS |
| TTGCCCTCGGAAGAAGAGTA+CGG | 0.598092 | 7_3:+66765312 | None:intergenic |
| AAGTGATAATGGAATGGAGA+GGG | 0.599161 | 7_3:+66767312 | None:intergenic |
| TGTCTTTCATGGGTGAATGG+TGG | 0.601295 | 7_3:-66766684 | Msa1118180:CDS |
| CAGCCGTACTCTTCTTCCGA+GGG | 0.605517 | 7_3:-66765315 | Msa1118180:CDS |
| AAACTGCTAGAGACATTGAA+TGG | 0.606741 | 7_3:+66767069 | None:intergenic |
| GTACACTTTGAAGGATCATG+TGG | 0.607082 | 7_3:-66765871 | Msa1118180:CDS |
| CATCAAGAAGATCAAAGATG+AGG | 0.610753 | 7_3:+66766970 | None:intergenic |
| GAAGAACCAGCTGATAACAT+TGG | 0.613682 | 7_3:+66765240 | None:intergenic |
| AGGTACTCACAGGTGCAACA+AGG | 0.615692 | 7_3:+66765721 | None:intergenic |
| GTGATGAATGATGAAGATGA+TGG | 0.620573 | 7_3:-66766852 | Msa1118180:CDS |
| TGAAAACTACCTAACTGCAA+TGG | 0.630112 | 7_3:+66765822 | None:intergenic |
| TTGCAGAAATCACAGGATGT+GGG | 0.630242 | 7_3:-66765169 | Msa1118180:CDS |
| GGTACTCACAGGTGCAACAA+GGG | 0.630789 | 7_3:+66765722 | None:intergenic |
| AGCCACCGGTGAAAACTGCA+AGG | 0.634654 | 7_3:-66766060 | Msa1118180:CDS |
| TAGAGATCAAGTTGTCCCAA+AGG | 0.636770 | 7_3:-66764767 | Msa1118180:CDS |
| CCATGCATAATGTGATATGT+GGG | 0.638365 | 7_3:-66764864 | Msa1118180:CDS |
| TGATGAACGCATTGATGGGG+TGG | 0.639506 | 7_3:-66766919 | Msa1118180:CDS |
| TTTAGAGCAACAACAAGGAG+AGG | 0.653335 | 7_3:+66766896 | None:intergenic |
| AAAGTGATAATGGAATGGAG+AGG | 0.659573 | 7_3:+66767311 | None:intergenic |
| TCCCATTTAGAGCAACAACA+AGG | 0.665324 | 7_3:+66766891 | None:intergenic |
| TTGAATATATAATGTTTGAG+TGG | 0.691382 | 7_3:-66764452 | Msa1118180:three_prime_UTR |
| AGTACTACATCAAAGAGACA+AGG | 0.697104 | 7_3:+66767265 | None:intergenic |
| CCTTGATGAACGCATTGATG+GGG | 0.701791 | 7_3:-66766922 | Msa1118180:CDS |
| GCCACCGGTGAAAACTGCAA+GGG | 0.704203 | 7_3:-66766059 | Msa1118180:CDS |
| AAGAATATAACATTCTCACA+AGG | 0.713736 | 7_3:+66766032 | None:intergenic |
| CATGCATAATGTGATATGTG+GGG | 0.714654 | 7_3:-66764863 | Msa1118180:CDS |
| GGAAATGATTGAGAAATCTG+TGG | 0.717663 | 7_3:-66765850 | Msa1118180:CDS |
| ATGCATAATGTGATATGTGG+GGG | 0.727700 | 7_3:-66764862 | Msa1118180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAATAAAAAAGAAAATT+AGG | + | chr7_3:66766401-66766420 | None:intergenic | 10.0% |
| !! | ACAAAAAGAAATAAATAAAA+AGG | + | chr7_3:66766800-66766819 | None:intergenic | 10.0% |
| !!! | TAAATATGAGAATTTTTTTT+TGG | - | chr7_3:66767156-66767175 | Msa1118180:five_prime_UTR | 10.0% |
| !! | AATAAGCTAAAAAAAGATTA+TGG | + | chr7_3:66765161-66765180 | None:intergenic | 15.0% |
| !!! | AAATAGTTTGACTTTATTAT+TGG | - | chr7_3:66765206-66765225 | Msa1118180:CDS | 15.0% |
| !! | ATTTATATAACAAAAGACAT+AGG | + | chr7_3:66765513-66765532 | None:intergenic | 15.0% |
| !!! | TTCTTTTTTATTTCTTCTTA+TGG | - | chr7_3:66766405-66766424 | Msa1118180:intron | 15.0% |
| !!! | TTGAAAATTTTGACAAAAAA+TGG | - | chr7_3:66766935-66766954 | Msa1118180:CDS | 15.0% |
| !! | GTTAAAATAAATGTTATACA+AGG | - | chr7_3:66766959-66766978 | Msa1118180:CDS | 15.0% |
| !! | ATTATGTTAATTTCAGTATT+TGG | + | chr7_3:66767040-66767059 | None:intergenic | 15.0% |
| !! | AAATTCTCATATTTAATCAA+TGG | + | chr7_3:66767151-66767170 | None:intergenic | 15.0% |
| !!! | AGAATTTTTTTTTGGTAATT+TGG | - | chr7_3:66767164-66767183 | Msa1118180:five_prime_UTR | 15.0% |
| !! | CATTAATAAAAACTAGAATC+TGG | - | chr7_3:66764641-66764660 | Msa1118180:CDS | 20.0% |
| !!! | TAAACTTCATTTTGTTGTTA+AGG | - | chr7_3:66765103-66765122 | Msa1118180:intron | 20.0% |
| !!! | TTTTGTGCTACATATTTTTT+TGG | - | chr7_3:66766121-66766140 | Msa1118180:intron | 20.0% |
| !!! | TTATGTTTTGATGTTTTTAC+TGG | - | chr7_3:66766202-66766221 | Msa1118180:intron | 20.0% |
| !!! | TATGTTTTGATGTTTTTACT+GGG | - | chr7_3:66766203-66766222 | Msa1118180:intron | 20.0% |
| !!! | TTTATTTCTTCTTATGGTTT+TGG | - | chr7_3:66766411-66766430 | Msa1118180:intron | 20.0% |
| !!! | GTAATAACCATTTTATTGAA+AGG | - | chr7_3:66766637-66766656 | Msa1118180:CDS | 20.0% |
| !!! | AAATAAATAAAAAGGTGTGT+CGG | + | chr7_3:66766792-66766811 | None:intergenic | 20.0% |
| !!! | TATTTCTTTTTGTCTTTTTC+AGG | - | chr7_3:66766807-66766826 | Msa1118180:CDS | 20.0% |
| !!! | ATTTCTTTTTGTCTTTTTCA+GGG | - | chr7_3:66766808-66766827 | Msa1118180:CDS | 20.0% |
| !! | TTGAATATATAATGTTTGAG+TGG | - | chr7_3:66767300-66767319 | Msa1118180:five_prime_UTR | 20.0% |
| !!! | AAGAAAAAGTGATAATGGAA+TGG | + | chr7_3:66764449-66764468 | None:intergenic | 25.0% |
| ! | TAAGGAAGAAAAAGTGATAA+TGG | + | chr7_3:66764454-66764473 | None:intergenic | 25.0% |
| ! | CAAGGATATATAAGTGTTTA+AGG | + | chr7_3:66764472-66764491 | None:intergenic | 25.0% |
| !!! | CAATTGTTCATCCATTTTTT+TGG | + | chr7_3:66764723-66764742 | None:intergenic | 25.0% |
| ! | AAGAACATGTTTAGAGAAAT+AGG | - | chr7_3:66764948-66764967 | Msa1118180:intron | 25.0% |
| !!! | CTTATTTTCATGAACTCTTT+AGG | - | chr7_3:66765175-66765194 | Msa1118180:CDS | 25.0% |
| !! | ATTGAGTTGTTTATCGAAAA+TGG | - | chr7_3:66765487-66765506 | Msa1118180:intron | 25.0% |
| ! | AATAATCAAACAAGGTTGTT+TGG | + | chr7_3:66765599-66765618 | None:intergenic | 25.0% |
| ! | ACAGAGAAAATAATCAAACA+AGG | + | chr7_3:66765607-66765626 | None:intergenic | 25.0% |
| ! | AAGAATATAACATTCTCACA+AGG | + | chr7_3:66765723-66765742 | None:intergenic | 25.0% |
| !! | TTTACATTTTCAGAGAAACA+TGG | + | chr7_3:66765792-66765811 | None:intergenic | 25.0% |
| !!! | GTGATTGATTTTACACAATT+GGG | + | chr7_3:66766011-66766030 | None:intergenic | 25.0% |
| !!! | TATATCTAGTTTTGAGTCTA+AGG | + | chr7_3:66766054-66766073 | None:intergenic | 25.0% |
| !!! | TTGCATTCAAGTTTTAAGAT+TGG | - | chr7_3:66766074-66766093 | Msa1118180:intron | 25.0% |
| !!! | TTCAAGTTTTAAGATTGGAA+TGG | - | chr7_3:66766079-66766098 | Msa1118180:intron | 25.0% |
| !! | GTTTATGACACAATTTTACT+CGG | + | chr7_3:66766291-66766310 | None:intergenic | 25.0% |
| !! | AATTAGGTGATATTTTCCAA+AGG | + | chr7_3:66766385-66766404 | None:intergenic | 25.0% |
| ! | AATAGAGCCTTTCAATAAAA+TGG | + | chr7_3:66766647-66766666 | None:intergenic | 25.0% |
| !!! | CATCATTAAGTTGAAGTTAA+AGG | - | chr7_3:66767012-66767031 | Msa1118180:CDS | 25.0% |
| ! | TTTCAGATAGTTTGTATGAG+AGG | - | chr7_3:66764925-66764944 | Msa1118180:CDS | 30.0% |
| ! | GAAATAGGTTTGCTTCAATT+TGG | - | chr7_3:66764963-66764982 | Msa1118180:intron | 30.0% |
| TCAATTTGGTAGAAAAAGAG+AGG | - | chr7_3:66764977-66764996 | Msa1118180:intron | 30.0% | |
| GAAGATTCTAATGGAAAATG+TGG | - | chr7_3:66765002-66765021 | Msa1118180:intron | 30.0% | |
| ACAACTACCATACCTAATAA+GGG | + | chr7_3:66765131-66765150 | None:intergenic | 30.0% | |
| TACAACTACCATACCTAATA+AGG | + | chr7_3:66765132-66765151 | None:intergenic | 30.0% | |
| !! | GACTTTATTATTGGCTTGTT+TGG | - | chr7_3:66765215-66765234 | Msa1118180:CDS | 30.0% |
| ACTTATTTGAGCTTATCTAG+TGG | - | chr7_3:66765242-66765261 | Msa1118180:CDS | 30.0% | |
| ! | TAAGCATTTGTGTTACTGTT+TGG | - | chr7_3:66765267-66765286 | Msa1118180:CDS | 30.0% |
| CTTTAACAAGCTCTTCATAA+TGG | - | chr7_3:66765341-66765360 | Msa1118180:intron | 30.0% | |
| ! | TTGATTATTTTCTCTGTGTG+TGG | - | chr7_3:66765610-66765629 | Msa1118180:intron | 30.0% |
| ACACGTAAGAATGCATAAAA+GGG | + | chr7_3:66765636-66765655 | None:intergenic | 30.0% | |
| TACACGTAAGAATGCATAAA+AGG | + | chr7_3:66765637-66765656 | None:intergenic | 30.0% | |
| !! | TGTAGCTCATTTTGATATTG+TGG | - | chr7_3:66765653-66765672 | Msa1118180:intron | 30.0% |
| ! | AATTTCTATTTTACAGCCAC+CGG | - | chr7_3:66765678-66765697 | Msa1118180:CDS | 30.0% |
| GAGAATGTTATATTCTTGCA+TGG | - | chr7_3:66765726-66765745 | Msa1118180:CDS | 30.0% | |
| ! | TTATGTGTTCTTCCTCATTT+TGG | - | chr7_3:66765751-66765770 | Msa1118180:CDS | 30.0% |
| AAAGTGTACAAACAATCTCT+TGG | + | chr7_3:66765870-66765889 | None:intergenic | 30.0% | |
| AGATTGTTTGTACACTTTGA+AGG | - | chr7_3:66765872-66765891 | Msa1118180:CDS | 30.0% | |
| !! | GGTGATTGATTTTACACAAT+TGG | + | chr7_3:66766012-66766031 | None:intergenic | 30.0% |
| TAGCACAAAAGTTTCCAATA+TGG | + | chr7_3:66766111-66766130 | None:intergenic | 30.0% | |
| !!! | ATTTCTTCTTATGGTTTTGG+TGG | - | chr7_3:66766414-66766433 | Msa1118180:intron | 30.0% |
| TGTGATTTCTGCAATAGATT+AGG | + | chr7_3:66766577-66766596 | None:intergenic | 30.0% | |
| TAATCTATTGCAGAAATCAC+AGG | - | chr7_3:66766576-66766595 | Msa1118180:intron | 30.0% | |
| GGAACTGAATGAAATGAAAT+TGG | - | chr7_3:66767321-66767340 | Msa1118180:five_prime_UTR | 30.0% | |
| !! | AAGTGATAATGGAATGGAGA+GGG | + | chr7_3:66764443-66764462 | None:intergenic | 35.0% |
| !! | AAAGTGATAATGGAATGGAG+AGG | + | chr7_3:66764444-66764463 | None:intergenic | 35.0% |
| AGTACTACATCAAAGAGACA+AGG | + | chr7_3:66764490-66764509 | None:intergenic | 35.0% | |
| CTAGAGACATTGAATGGTAT+TGG | + | chr7_3:66764680-66764699 | None:intergenic | 35.0% | |
| AAACTGCTAGAGACATTGAA+TGG | + | chr7_3:66764686-66764705 | None:intergenic | 35.0% | |
| CATCAAGAAGATCAAAGATG+AGG | + | chr7_3:66764785-66764804 | None:intergenic | 35.0% | |
| !! | TCCTTGTTGTTGCTCTAAAT+GGG | - | chr7_3:66764860-66764879 | Msa1118180:CDS | 35.0% |
| GTGATGAATGATGAAGATGA+TGG | - | chr7_3:66764900-66764919 | Msa1118180:CDS | 35.0% | |
| AGAGAGGAAGAAGATTCTAA+TGG | - | chr7_3:66764993-66765012 | Msa1118180:intron | 35.0% | |
| GATTCTAATGGAAAATGTGG+TGG | - | chr7_3:66765005-66765024 | Msa1118180:intron | 35.0% | |
| ! | ATGTGAGTCTTGTCTTTCAT+GGG | - | chr7_3:66765058-66765077 | Msa1118180:intron | 35.0% |
| GTTGTTAAGGAACCCTTATT+AGG | - | chr7_3:66765116-66765135 | Msa1118180:intron | 35.0% | |
| TAAGGAACCCTTATTAGGTA+TGG | - | chr7_3:66765121-66765140 | Msa1118180:intron | 35.0% | |
| ATTGATTGCTATAGACCTGT+TGG | - | chr7_3:66765824-66765843 | Msa1118180:CDS | 35.0% | |
| TTGATTGCTATAGACCTGTT+GGG | - | chr7_3:66765825-66765844 | Msa1118180:CDS | 35.0% | |
| TACAAACAATCTCTTGGCTT+TGG | + | chr7_3:66765864-66765883 | None:intergenic | 35.0% | |
| GGAAATGATTGAGAAATCTG+TGG | - | chr7_3:66765902-66765921 | Msa1118180:CDS | 35.0% | |
| TGAAAACTACCTAACTGCAA+TGG | + | chr7_3:66765933-66765952 | None:intergenic | 35.0% | |
| TGGAATGGTATGAACCATAT+TGG | - | chr7_3:66766094-66766113 | Msa1118180:intron | 35.0% | |
| ! | AAAGCACTTGAAAAGTTTGC+TGG | - | chr7_3:66766476-66766495 | Msa1118180:intron | 35.0% |
| !! | AGTTTGCTGGAAAGAAATTG+TGG | - | chr7_3:66766489-66766508 | Msa1118180:intron | 35.0% |
| ! | CTGGTTCTTCATTTATGTCA+TGG | - | chr7_3:66766525-66766544 | Msa1118180:intron | 35.0% |
| TAAAGTTCATTACTCGCAAG+AGG | - | chr7_3:66766615-66766634 | Msa1118180:intron | 35.0% | |
| GACATTGTCATTGTCATATC+CGG | + | chr7_3:66766689-66766708 | None:intergenic | 35.0% | |
| ! | TTCTTGATAACAGACATGAC+TGG | - | chr7_3:66766839-66766858 | Msa1118180:CDS | 35.0% |
| TCCATGCATAATGTGATATG+TGG | - | chr7_3:66766887-66766906 | Msa1118180:CDS | 35.0% | |
| CCATGCATAATGTGATATGT+GGG | - | chr7_3:66766888-66766907 | Msa1118180:CDS | 35.0% | |
| CATGCATAATGTGATATGTG+GGG | - | chr7_3:66766889-66766908 | Msa1118180:CDS | 35.0% | |
| ATGCATAATGTGATATGTGG+GGG | - | chr7_3:66766890-66766909 | Msa1118180:CDS | 35.0% | |
| ACTTAATGATGCACTCCTTT+GGG | + | chr7_3:66767003-66767022 | None:intergenic | 35.0% | |
| AACTTAATGATGCACTCCTT+TGG | + | chr7_3:66767004-66767023 | None:intergenic | 35.0% | |
| !!! | CATCCATTTTTTTGGTGAGC+AGG | + | chr7_3:66764715-66764734 | None:intergenic | 40.0% |
| TACCTTGATGAACGCATTGA+TGG | - | chr7_3:66764828-66764847 | Msa1118180:CDS | 40.0% | |
| ! | ACCTTGATGAACGCATTGAT+GGG | - | chr7_3:66764829-66764848 | Msa1118180:CDS | 40.0% |
| ! | TTTAGAGCAACAACAAGGAG+AGG | + | chr7_3:66764859-66764878 | None:intergenic | 40.0% |
| !! | CTCCTTGTTGTTGCTCTAAA+TGG | - | chr7_3:66764859-66764878 | Msa1118180:CDS | 40.0% |
| ! | TCCCATTTAGAGCAACAACA+AGG | + | chr7_3:66764864-66764883 | None:intergenic | 40.0% |
| ! | CTAATGGAAAATGTGGTGGA+AGG | - | chr7_3:66765009-66765028 | Msa1118180:intron | 40.0% |
| GTGGAAGGATAGTGAAAAGT+TGG | - | chr7_3:66765024-66765043 | Msa1118180:intron | 40.0% | |
| ! | GTGAAAAGTTGGTCTGATTG+TGG | - | chr7_3:66765035-66765054 | Msa1118180:intron | 40.0% |
| ! | GATGTGAGTCTTGTCTTTCA+TGG | - | chr7_3:66765057-66765076 | Msa1118180:intron | 40.0% |
| TCTTGTCTTTCATGGGTGAA+TGG | - | chr7_3:66765065-66765084 | Msa1118180:intron | 40.0% | |
| CACTGTTTGAGTCCAAAATG+AGG | + | chr7_3:66765766-66765785 | None:intergenic | 40.0% | |
| ! | GTACACTTTGAAGGATCATG+TGG | - | chr7_3:66765881-66765900 | Msa1118180:CDS | 40.0% |
| ! | GCAGTTAGGTAGTTTTCATC+TGG | - | chr7_3:66765935-66765954 | Msa1118180:CDS | 40.0% |
| TATGGGCAGTGTAATTGCAT+TGG | - | chr7_3:66765968-66765987 | Msa1118180:CDS | 40.0% | |
| !! | CAGTGTAATTGCATTGGCTT+TGG | - | chr7_3:66765974-66765993 | Msa1118180:CDS | 40.0% |
| ! | TTTGAGTCTAAGGTACTCAC+AGG | + | chr7_3:66766044-66766063 | None:intergenic | 40.0% |
| ! | GTTTTTACTGGGCCAAAACT+TGG | - | chr7_3:66766214-66766233 | Msa1118180:intron | 40.0% |
| ! | TTGCATGTGACACCAAGTTT+TGG | + | chr7_3:66766229-66766248 | None:intergenic | 40.0% |
| GAAGAACCAGCTGATAACAT+TGG | + | chr7_3:66766515-66766534 | None:intergenic | 40.0% | |
| TATGTCATGGTACGAGCATT+TGG | - | chr7_3:66766538-66766557 | Msa1118180:intron | 40.0% | |
| ATGTCATGGTACGAGCATTT+GGG | - | chr7_3:66766539-66766558 | Msa1118180:intron | 40.0% | |
| ATTGCAGAAATCACAGGATG+TGG | - | chr7_3:66766582-66766601 | Msa1118180:intron | 40.0% | |
| TTGCAGAAATCACAGGATGT+GGG | - | chr7_3:66766583-66766602 | Msa1118180:intron | 40.0% | |
| GTAAAAGACACAACACACAC+CGG | - | chr7_3:66766667-66766686 | Msa1118180:CDS | 40.0% | |
| ACTGGACATACTCATCAATC+AGG | - | chr7_3:66766857-66766876 | Msa1118180:CDS | 40.0% | |
| GACATACTCATCAATCAGGT+TGG | - | chr7_3:66766861-66766880 | Msa1118180:CDS | 40.0% | |
| CCCACATATCACATTATGCA+TGG | + | chr7_3:66766891-66766910 | None:intergenic | 40.0% | |
| ! | TAGAGATCAAGTTGTCCCAA+AGG | - | chr7_3:66766985-66767004 | Msa1118180:CDS | 40.0% |
| GAAGCAATTTGCACAAAGTC+TGG | - | chr7_3:66767099-66767118 | Msa1118180:five_prime_UTR | 40.0% | |
| GAGCAAGTGGAAATGCGTTT+AGG | + | chr7_3:66764421-66764440 | None:intergenic | 45.0% | |
| !!! | CCATTTTTTTGGTGAGCAGG+AGG | + | chr7_3:66764712-66764731 | None:intergenic | 45.0% |
| CCTCCTGCTCACCAAAAAAA+TGG | - | chr7_3:66764709-66764728 | Msa1118180:CDS | 45.0% | |
| ! | CCTTGATGAACGCATTGATG+GGG | - | chr7_3:66764830-66764849 | Msa1118180:CDS | 45.0% |
| ATGGGAGAGACAGAAGAAGA+TGG | - | chr7_3:66764878-66764897 | Msa1118180:CDS | 45.0% | |
| TGTCTTTCATGGGTGAATGG+TGG | - | chr7_3:66765068-66765087 | Msa1118180:intron | 45.0% | |
| GCTATAGACCTGTTGGGATT+TGG | - | chr7_3:66765831-66765850 | Msa1118180:CDS | 45.0% | |
| GACTCTTTCCAAATCCCAAC+AGG | + | chr7_3:66765842-66765861 | None:intergenic | 45.0% | |
| GTGGTTCAACCATTGCAGTT+AGG | - | chr7_3:66765921-66765940 | Msa1118180:CDS | 45.0% | |
| TCATCTGGTTGCACACTCTA+TGG | - | chr7_3:66765950-66765969 | Msa1118180:CDS | 45.0% | |
| CATCTGGTTGCACACTCTAT+GGG | - | chr7_3:66765951-66765970 | Msa1118180:CDS | 45.0% | |
| TGAACAAGCATCATTGCCCT+CGG | + | chr7_3:66766456-66766475 | None:intergenic | 45.0% | |
| TTGTGGCCAATGTTATCAGC+TGG | - | chr7_3:66766506-66766525 | Msa1118180:intron | 45.0% | |
| ATGTGGGGGAGCAAAATTCA+TGG | - | chr7_3:66766904-66766923 | Msa1118180:CDS | 45.0% | |
| ACAGTGCTGTGATCTGCATT+TGG | + | chr7_3:66767064-66767083 | None:intergenic | 45.0% | |
| ! | GATCACAGCACTGTGCTATT+AGG | - | chr7_3:66767070-66767089 | Msa1118180:exon | 45.0% |
| CCCCATCAATGCGTTCATCA+AGG | + | chr7_3:66764833-66764852 | None:intergenic | 50.0% | |
| ! | TGATGAACGCATTGATGGGG+TGG | - | chr7_3:66764833-66764852 | Msa1118180:CDS | 50.0% |
| CTTTCATGGGTGAATGGTGG+TGG | - | chr7_3:66765071-66765090 | Msa1118180:intron | 50.0% | |
| ! | CTCTCCCTTGCAGTTTTCAC+CGG | + | chr7_3:66765700-66765719 | None:intergenic | 50.0% |
| GGTACTCACAGGTGCAACAA+GGG | + | chr7_3:66766033-66766052 | None:intergenic | 50.0% | |
| AGGTACTCACAGGTGCAACA+AGG | + | chr7_3:66766034-66766053 | None:intergenic | 50.0% | |
| TCAGACACACACTTCGCCTT+TGG | - | chr7_3:66766366-66766385 | Msa1118180:intron | 50.0% | |
| TTGCCCTCGGAAGAAGAGTA+CGG | + | chr7_3:66766443-66766462 | None:intergenic | 50.0% | |
| GAAATCACAGGATGTGGGAG+AGG | - | chr7_3:66766588-66766607 | Msa1118180:intron | 50.0% | |
| ! | CACAAAGTCTGGAGCATGCA+TGG | - | chr7_3:66767110-66767129 | Msa1118180:five_prime_UTR | 50.0% |
| TGGAATGGAGAGGGAGCAAG+TGG | + | chr7_3:66764434-66764453 | None:intergenic | 55.0% | |
| AGCCACCGGTGAAAACTGCA+AGG | - | chr7_3:66765692-66765711 | Msa1118180:CDS | 55.0% | |
| GCCACCGGTGAAAACTGCAA+GGG | - | chr7_3:66765693-66765712 | Msa1118180:CDS | 55.0% | |
| ! | TCCCTTGCAGTTTTCACCGG+TGG | + | chr7_3:66765697-66765716 | None:intergenic | 55.0% |
| CAGCCGTACTCTTCTTCCGA+GGG | - | chr7_3:66766437-66766456 | Msa1118180:intron | 55.0% | |
| GCAGCCGTACTCTTCTTCCG+AGG | - | chr7_3:66766436-66766455 | Msa1118180:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 66764412 | 66767362 | 66764412 | ID=Msa1118180;Name=Msa1118180 |
| chr7_3 | mRNA | 66764412 | 66767362 | 66764412 | ID=Msa1118180-mRNA-1;Parent=Msa1118180;Name=Msa1118180-mRNA-1;_AED=0.03;_eAED=0.03;_QI=278|0.66|0.75|1|1|1|4|218|455 |
| chr7_3 | exon | 66764412 | 66764945 | 66764412 | ID=Msa1118180-mRNA-1:exon:16236;Parent=Msa1118180-mRNA-1 |
| chr7_3 | exon | 66765138 | 66765334 | 66765138 | ID=Msa1118180-mRNA-1:exon:16235;Parent=Msa1118180-mRNA-1 |
| chr7_3 | exon | 66765674 | 66766080 | 66765674 | ID=Msa1118180-mRNA-1:exon:16234;Parent=Msa1118180-mRNA-1 |
| chr7_3 | exon | 66766637 | 66767362 | 66766637 | ID=Msa1118180-mRNA-1:exon:16233;Parent=Msa1118180-mRNA-1 |
| chr7_3 | five_prime_UTR | 66767085 | 66767362 | 66767085 | ID=Msa1118180-mRNA-1:five_prime_utr;Parent=Msa1118180-mRNA-1 |
| chr7_3 | CDS | 66766637 | 66767084 | 66766637 | ID=Msa1118180-mRNA-1:cds;Parent=Msa1118180-mRNA-1 |
| chr7_3 | CDS | 66765674 | 66766080 | 66765674 | ID=Msa1118180-mRNA-1:cds;Parent=Msa1118180-mRNA-1 |
| chr7_3 | CDS | 66765138 | 66765334 | 66765138 | ID=Msa1118180-mRNA-1:cds;Parent=Msa1118180-mRNA-1 |
| chr7_3 | CDS | 66764630 | 66764945 | 66764630 | ID=Msa1118180-mRNA-1:cds;Parent=Msa1118180-mRNA-1 |
| chr7_3 | three_prime_UTR | 66764412 | 66764629 | 66764412 | ID=Msa1118180-mRNA-1:three_prime_utr;Parent=Msa1118180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
