AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1072550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072550 MtrunA17_Chr7g0254981 82.927 164 8 2 21 165 117 279 5.99e-88 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 92 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCTGGAGACAGCATTTC+TGG 0.169125 7_2:+69682361 Msa1072550:CDS
GAGAAAGAGAGAGAGAAAAT+AGG 0.236678 7_2:-69679103 None:intergenic
CAGCCCCTATCAGAGCCTTC+TGG 0.281442 7_2:+69683466 Msa1072550:CDS
TCATGTTAAAAGCCATTTAC+AGG 0.288705 7_2:+69682059 Msa1072550:five_prime_UTR
TTACCATCACCTGGTGATTC+AGG 0.291103 7_2:-69682207 None:intergenic
AAGAATTAGTTTCTGTTTGT+AGG 0.306362 7_2:+69683707 Msa1072550:exon
GGGTCTAGTGATGCCCTTGC+AGG 0.311416 7_2:+69683487 Msa1072550:CDS
AAAGATGAGAAAAGGAATTC+TGG 0.312253 7_2:+69682346 Msa1072550:CDS
CACATATTGATACCTGTAAA+TGG 0.320680 7_2:-69682071 None:intergenic
AGTGAAACTTGTTAATATCT+TGG 0.325989 7_2:-69684070 None:intergenic
AAATTGAAGCATTCAGAATC+TGG 0.331873 7_2:-69679145 None:intergenic
TGCTGGCTATGGATTTGATT+TGG 0.345238 7_2:+69683648 Msa1072550:CDS
AGAAAGAGAGAGAGAAAATA+GGG 0.356544 7_2:-69679102 None:intergenic
GTATCATGCAAAGAAGTTTC+CGG 0.366560 7_2:+69679365 Msa1072550:five_prime_UTR
GCATCGTCTTCATACAAGTT+TGG 0.374272 7_2:-69683628 None:intergenic
GAGCAGTCTTTCTTGTAACT+TGG 0.380002 7_2:-69683573 None:intergenic
TAGACCCAGAAGGCTCTGAT+AGG 0.397855 7_2:-69683471 None:intergenic
ATCACTCTCAAAACACCTTT+CGG 0.400760 7_2:-69682012 None:intergenic
TGATTGTGATGTTGGTCCTT+TGG 0.405745 7_2:+69683603 Msa1072550:CDS
TTGTCATCATTTATTATGTT+CGG 0.411164 7_2:+69683944 Msa1072550:three_prime_UTR
TTGAGAGTGATGGGTGTGCC+TGG 0.439476 7_2:+69682024 Msa1072550:five_prime_UTR
TACATCAAATAAATTTATAG+AGG 0.441978 7_2:-69678678 None:intergenic
AGCAGTCTTTCTTGTAACTT+GGG 0.448297 7_2:-69683572 None:intergenic
GTCGATGCTATTACGCAGCT+TGG 0.451599 7_2:+69679546 Msa1072550:five_prime_UTR
GTGAACAGTTTGCAAATGGT+GGG 0.466595 7_2:+69679430 Msa1072550:five_prime_UTR
TCTACATTAATATATACAAA+TGG 0.467748 7_2:-69683803 None:intergenic
CAGATTCTAAAGATGAGAAA+AGG 0.474395 7_2:+69682338 Msa1072550:CDS
AAATCTCAAGGCGGTGGTGG+TGG 0.477044 7_2:+69679408 Msa1072550:five_prime_UTR
GTACATGTGGCGATGAATGC+TGG 0.478788 7_2:+69683906 Msa1072550:three_prime_UTR
AGCCCCTATCAGAGCCTTCT+GGG 0.481660 7_2:+69683467 Msa1072550:CDS
GCGTAATAGCATCGACAAAA+CGG 0.482228 7_2:-69679539 None:intergenic
CTTCTGCAAGTATTTACCCT+GGG 0.483213 7_2:-69683365 None:intergenic
GGTGAACAGTTTGCAAATGG+TGG 0.483332 7_2:+69679429 Msa1072550:five_prime_UTR
GTTCAACCTGCTGGAGGTGG+TGG 0.495717 7_2:+69679480 Msa1072550:five_prime_UTR
TATGAAGACGATGCTGGCTA+TGG 0.503534 7_2:+69683637 Msa1072550:CDS
ATATATACAAATGGATTGCA+TGG 0.506158 7_2:-69683794 None:intergenic
TGTAGCATCATCGTCTCCTC+CGG 0.509828 7_2:-69679384 None:intergenic
AGACCCAGAAGGCTCTGATA+GGG 0.512319 7_2:-69683470 None:intergenic
CAGAAGGCTCTGATAGGGGC+TGG 0.517321 7_2:-69683465 None:intergenic
TGCTTCCCACCACCTCCAGC+AGG 0.519989 7_2:-69679486 None:intergenic
GTGGGAAGCAGCGTTTGCGT+TGG 0.522000 7_2:+69679499 Msa1072550:five_prime_UTR
GATGCTATTACGCAGCTTGG+TGG 0.523773 7_2:+69679549 Msa1072550:five_prime_UTR
GTAATGAGATTGAGGATTAG+TGG 0.525216 7_2:-69679058 None:intergenic
GAGAATTGATGAAGGTTCAA+AGG 0.527042 7_2:+69683534 Msa1072550:CDS
AGGTAGTACCTTGGCAGCAT+CGG 0.527216 7_2:+69683411 Msa1072550:CDS
CAGAAGAATGATTGTGATGT+TGG 0.531947 7_2:+69683595 Msa1072550:CDS
TGGCGCTGATTCTTCCCCGT+GGG 0.534646 7_2:+69682381 Msa1072550:CDS
ACAAATGAGAATTGAAGCCC+AGG 0.536357 7_2:+69683348 Msa1072550:CDS
GAACAGTTTGCAAATGGTGG+GGG 0.537010 7_2:+69679432 Msa1072550:five_prime_UTR
CATAAATCTCAAGGCGGTGG+TGG 0.541663 7_2:+69679405 Msa1072550:five_prime_UTR
ATAGAGGAACAGCAGAAACT+AGG 0.544970 7_2:+69683391 Msa1072550:CDS
ATTGATGAAGGTTCAAAGGA+TGG 0.546371 7_2:+69683538 Msa1072550:CDS
ATTCAGGCAAGTACTTCGCC+AGG 0.553148 7_2:-69682191 None:intergenic
TGATCTTTGTAGTCAACTTG+TGG 0.554077 7_2:+69684022 Msa1072550:three_prime_UTR
TGAACAGTTTGCAAATGGTG+GGG 0.557194 7_2:+69679431 Msa1072550:five_prime_UTR
GGGAAAGTGTAATGAGATTG+AGG 0.557969 7_2:-69679066 None:intergenic
CTACATGTAGAAGTATCGCC+TGG 0.558759 7_2:+69682173 Msa1072550:intron
AAGTGTTTCCGATGCTGCCA+AGG 0.559809 7_2:-69683419 None:intergenic
TCAACTTGTGGTATATAACT+TGG 0.562621 7_2:+69684034 Msa1072550:three_prime_UTR
GAATCACCAGGTGATGGTAA+AGG 0.568026 7_2:+69682210 Msa1072550:five_prime_UTR
TCATACAAGTTTGGATCCAA+AGG 0.570266 7_2:-69683619 None:intergenic
AAGTACTTGCCTGAATCACC+AGG 0.571352 7_2:+69682198 Msa1072550:five_prime_UTR
ACATGATAAATGGTCAGTCC+AGG 0.573039 7_2:-69682042 None:intergenic
GCAGCGTTTGCGTTGGACGT+CGG 0.573253 7_2:+69679506 Msa1072550:five_prime_UTR
CTTCTCTCCTGTCGTGAGAG+TGG 0.573861 7_2:+69683838 Msa1072550:three_prime_UTR
CTACATAAATCTCAAGGCGG+TGG 0.580370 7_2:+69679402 Msa1072550:five_prime_UTR
GGTGGTGAACAGTTTGCAAA+TGG 0.580373 7_2:+69679426 Msa1072550:five_prime_UTR
GTGTTTACCACTCTCACGAC+AGG 0.581242 7_2:-69683845 None:intergenic
AACTTGTATGAAGACGATGC+TGG 0.582842 7_2:+69683631 Msa1072550:CDS
TACATGTGGCGATGAATGCT+GGG 0.593026 7_2:+69683907 Msa1072550:three_prime_UTR
CTGGCGCTGATTCTTCCCCG+TGG 0.593494 7_2:+69682380 Msa1072550:CDS
GACCCAGAAGGCTCTGATAG+GGG 0.597299 7_2:-69683469 None:intergenic
AATGTTCAACCTGCTGGAGG+TGG 0.620630 7_2:+69679477 Msa1072550:five_prime_UTR
TTGCCTGAATCACCAGGTGA+TGG 0.621799 7_2:+69682204 Msa1072550:five_prime_UTR
ATGATGCTACATAAATCTCA+AGG 0.630109 7_2:+69679396 Msa1072550:five_prime_UTR
ATGACAGGAGCAACACCGAA+AGG 0.633323 7_2:+69681997 Msa1072550:intron
TCAAGCTTGTCAATTAGTGA+CGG 0.634724 7_2:+69683992 Msa1072550:three_prime_UTR
TGACAAGCTTGATATTGACA+TGG 0.637216 7_2:-69683981 None:intergenic
TCTTCTGCAAGTATTTACCC+TGG 0.641154 7_2:-69683366 None:intergenic
ATTTCTGTTGACTGAGAGTG+CGG 0.642747 7_2:-69683868 None:intergenic
TTTCTGTTGACTGAGAGTGC+GGG 0.644510 7_2:-69683867 None:intergenic
GCAGAAACTAGGTAGTACCT+TGG 0.646490 7_2:+69683402 Msa1072550:CDS
AAGGCACCTTTACCATCACC+TGG 0.649278 7_2:-69682216 None:intergenic
CAAATGAGAATTGAAGCCCA+GGG 0.650033 7_2:+69683349 Msa1072550:CDS
TTCAACCTGCTGGAGGTGGT+GGG 0.656162 7_2:+69679481 Msa1072550:five_prime_UTR
AGGGCATCACTAGACCCAGA+AGG 0.683087 7_2:-69683481 None:intergenic
ATACTTGCAGAAGATCATAG+AGG 0.704943 7_2:+69683375 Msa1072550:CDS
ATTGACATGCATTGTACATG+TGG 0.705794 7_2:+69683893 Msa1072550:three_prime_UTR
TTGGAAACAGAAAATGACGA+CGG 0.712157 7_2:+69683667 Msa1072550:CDS
TCATGCAAAGAAGTTTCCGG+AGG 0.726416 7_2:+69679368 Msa1072550:five_prime_UTR
ATGCTACATAAATCTCAAGG+CGG 0.774912 7_2:+69679399 Msa1072550:five_prime_UTR
AAACAACTAAGACACCCACG+GGG 0.782851 7_2:-69682395 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTTGTATTTTTTTTTT+GGG - chr7_2:69678633-69678652 None:intergenic 10.0%
!!! TTGAATTTGTATTTTTTTTT+TGG - chr7_2:69678634-69678653 None:intergenic 10.0%
!!! AACTATTTACTATTTTTTAT+AGG + chr7_2:69678712-69678731 Msa1072550:intron 10.0%
!! AAAAAAAAAAGAGTTTATAT+AGG - chr7_2:69681278-69681297 None:intergenic 10.0%
!!! TGAATAATTTAAAGTTAAAA+AGG - chr7_2:69681978-69681997 None:intergenic 10.0%
!!! AATATTTTACTAATTTTACA+TGG + chr7_2:69682123-69682142 Msa1072550:intron 10.0%
!! AATATATAATTTACAAAAAC+AGG - chr7_2:69683774-69683793 None:intergenic 10.0%
!! TACATCAAATAAATTTATAG+AGG - chr7_2:69678681-69678700 None:intergenic 15.0%
!!! TTTTTTTTTTTTTGTGATTG+AGG - chr7_2:69679012-69679031 None:intergenic 15.0%
!! GTTAGTGTATATTTATATTA+TGG + chr7_2:69679708-69679727 Msa1072550:intron 15.0%
!!! TCATTAGTTTAAAATGATAA+AGG + chr7_2:69680098-69680117 Msa1072550:intron 15.0%
!!! ACCTTTTTTTAATATTTTAG+TGG + chr7_2:69681847-69681866 Msa1072550:intron 15.0%
!! TCCACTAAAATATTAAAAAA+AGG - chr7_2:69681851-69681870 None:intergenic 15.0%
!!! TTTTTTAATATTTTAGTGGA+TGG + chr7_2:69681851-69681870 Msa1072550:intron 15.0%
!!! TTGTTTTATTAAAATGTTAG+AGG - chr7_2:69682461-69682480 None:intergenic 15.0%
!! AAGAATTATATAAAAATTGC+AGG - chr7_2:69683064-69683083 None:intergenic 15.0%
!! TCTACATTAATATATACAAA+TGG - chr7_2:69683806-69683825 None:intergenic 15.0%
!! AGTGTATATTTATATTATGG+TGG + chr7_2:69679711-69679730 Msa1072550:intron 20.0%
!! GTGTATATTTATATTATGGT+GGG + chr7_2:69679712-69679731 Msa1072550:intron 20.0%
!! ATGAAAAATGAAATGCTTTA+CGG + chr7_2:69680031-69680050 Msa1072550:intron 20.0%
!! ACATTAACTCTCATATTTAA+TGG - chr7_2:69680284-69680303 None:intergenic 20.0%
!! TTAAATATGAGAGTTAATGT+TGG + chr7_2:69680284-69680303 Msa1072550:intron 20.0%
!!! CTTTTTTGTACTTGTAATAT+GGG + chr7_2:69680391-69680410 Msa1072550:intron 20.0%
!!! TTTTTTGTACTTGTAATATG+GGG + chr7_2:69680392-69680411 Msa1072550:intron 20.0%
!!! AGAATTTAAAACATTAGTAG+TGG - chr7_2:69680455-69680474 None:intergenic 20.0%
!! AAAAACAATAAAGAGAAAGA+TGG + chr7_2:69681649-69681668 Msa1072550:intron 20.0%
!! AGTAGTTAAGGAATAAAAAA+TGG - chr7_2:69681803-69681822 None:intergenic 20.0%
!!! ATTTAAAGTTAAAAAGGTCT+AGG - chr7_2:69681972-69681991 None:intergenic 20.0%
!! AACTTTAAATTATTCATGAC+AGG + chr7_2:69681982-69682001 Msa1072550:intron 20.0%
!! TACATGTAGTGATATATAAT+AGG - chr7_2:69682162-69682181 None:intergenic 20.0%
!! CTATGCTATTAGTATAAATA+AGG + chr7_2:69682577-69682596 Msa1072550:intron 20.0%
!! TTAATCATTGTTGAAGTTAT+GGG - chr7_2:69682702-69682721 None:intergenic 20.0%
!! TTTAATCATTGTTGAAGTTA+TGG - chr7_2:69682703-69682722 None:intergenic 20.0%
!! ATGATAAATAAAAGATGGTT+GGG - chr7_2:69682739-69682758 None:intergenic 20.0%
!!! TAGAAACATTTGAAGTTTTA+CGG - chr7_2:69682914-69682933 None:intergenic 20.0%
!!! TTTCAAGTTAAATTTCTTCA+CGG + chr7_2:69682979-69682998 Msa1072550:intron 20.0%
!!! TGTAGTTTCATCTAAAATAA+TGG - chr7_2:69683006-69683025 None:intergenic 20.0%
!! CTTATTTAATAGATAAGTGA+TGG - chr7_2:69683147-69683166 None:intergenic 20.0%
!!! ATCAATTCTCTGTTTTTTAT+GGG - chr7_2:69683524-69683543 None:intergenic 20.0%
!! TTGTCATCATTTATTATGTT+CGG + chr7_2:69683944-69683963 Msa1072550:three_prime_UTR 20.0%
!!! GTACTTTTTGGGTTTTTATT+TGG - chr7_2:69678872-69678891 None:intergenic 25.0%
!!! AAATAGGGATTTGATTTTCT+CGG - chr7_2:69679090-69679109 None:intergenic 25.0%
! TTAAATTCATCCAAGTCAAA+TGG - chr7_2:69679228-69679247 None:intergenic 25.0%
!!! ATTGTTGTGTTTTTTTGTTG+TGG + chr7_2:69679322-69679341 Msa1072550:intron 25.0%
!!! AGATTAAGATGTGTTGTTTT+TGG + chr7_2:69679603-69679622 Msa1072550:intron 25.0%
!!! GTTTCTTTTTGATTGTGTTT+AGG + chr7_2:69679635-69679654 Msa1072550:intron 25.0%
! TGAAAAATGAAATGCTTTAC+GGG + chr7_2:69680032-69680051 Msa1072550:intron 25.0%
! GCATTAACTCTCATATTTAA+TGG - chr7_2:69680331-69680350 None:intergenic 25.0%
! GAATCATACCTTATATGATT+CGG + chr7_2:69680359-69680378 Msa1072550:intron 25.0%
! ACTATTTACCGAATCATATA+AGG - chr7_2:69680370-69680389 None:intergenic 25.0%
!!! GCTTTTTTGTACTTGTAATA+TGG + chr7_2:69680390-69680409 Msa1072550:intron 25.0%
! ACAGAATATGTACTTTCATT+TGG - chr7_2:69680627-69680646 None:intergenic 25.0%
!! AAATGAAAGTACATATTCTG+TGG + chr7_2:69680626-69680645 Msa1072550:intron 25.0%
!! AGTTGATTAATTCTGTTTTG+TGG + chr7_2:69681003-69681022 Msa1072550:intron 25.0%
!!! TTTAGCTTTCAGTTTATGAA+AGG + chr7_2:69681217-69681236 Msa1072550:intron 25.0%
!! TTAGCTTTCAGTTTATGAAA+GGG + chr7_2:69681218-69681237 Msa1072550:intron 25.0%
!!! CTTTGTTTTAGTTGGTTTTT+AGG + chr7_2:69681249-69681268 Msa1072550:intron 25.0%
!!! TGTGGTATTTTAATGAAATG+TGG - chr7_2:69681349-69681368 None:intergenic 25.0%
! GTTGCATTATTAATGAAATG+TGG - chr7_2:69681367-69681386 None:intergenic 25.0%
! CTTCAAAGTCATTTCATATA+GGG - chr7_2:69681507-69681526 None:intergenic 25.0%
! ACTTCAAAGTCATTTCATAT+AGG - chr7_2:69681508-69681527 None:intergenic 25.0%
!!! GTCATTATGAAGGTTTTAAA+TGG - chr7_2:69681556-69681575 None:intergenic 25.0%
!! GTTTTTATCTCAAAAGATGA+GGG - chr7_2:69681635-69681654 None:intergenic 25.0%
!!! TGTTTTTATCTCAAAAGATG+AGG - chr7_2:69681636-69681655 None:intergenic 25.0%
!! TGATATTTGTACAACCATTT+TGG - chr7_2:69681759-69681778 None:intergenic 25.0%
! ACTTGATGTATAATCATTGA+TGG + chr7_2:69681878-69681897 Msa1072550:intron 25.0%
! ATGTATAATCATTGATGGAA+GGG + chr7_2:69681883-69681902 Msa1072550:intron 25.0%
!! ATGGCTTTTAACATGATAAA+TGG - chr7_2:69682055-69682074 None:intergenic 25.0%
!! GACATTTCTCATAACTTTTT+AGG - chr7_2:69682265-69682284 None:intergenic 25.0%
! AAGGAGTTACAAATTATCTT+CGG - chr7_2:69682422-69682441 None:intergenic 25.0%
! TATTAAAATGTTAGAGGTAG+AGG - chr7_2:69682455-69682474 None:intergenic 25.0%
! TTTATACTAATAGCATAGCT+AGG - chr7_2:69682575-69682594 None:intergenic 25.0%
! TGCTATTAGTATAAATAAGG+AGG + chr7_2:69682580-69682599 Msa1072550:intron 25.0%
! AAAGAGAAAAATGAAGACTT+TGG - chr7_2:69682671-69682690 None:intergenic 25.0%
! ACTTCAACAATGATTAAACT+TGG + chr7_2:69682705-69682724 Msa1072550:intron 25.0%
! GATGATAAATAAAAGATGGT+TGG - chr7_2:69682740-69682759 None:intergenic 25.0%
! CACAGATGATAAATAAAAGA+TGG - chr7_2:69682744-69682763 None:intergenic 25.0%
! TATAATTCTTCATTGTCAGA+AGG - chr7_2:69683170-69683189 None:intergenic 25.0%
!!! TCAATTCTCTGTTTTTTATG+GGG - chr7_2:69683523-69683542 None:intergenic 25.0%
!!! CATCAATTCTCTGTTTTTTA+TGG - chr7_2:69683525-69683544 None:intergenic 25.0%
! AAAAAACAGAGAATTGATGA+AGG + chr7_2:69683526-69683545 Msa1072550:CDS 25.0%
!! AAGAATTAGTTTCTGTTTGT+AGG + chr7_2:69683707-69683726 Msa1072550:exon 25.0%
!!! ATATATACAAATGGATTGCA+TGG - chr7_2:69683797-69683816 None:intergenic 25.0%
!!! AGTGAAACTTGTTAATATCT+TGG - chr7_2:69684073-69684092 None:intergenic 25.0%
!! AAAATGAGCGTTGAAATGAA+CGG - chr7_2:69678966-69678985 None:intergenic 30.0%
!! AATAGGGATTTGATTTTCTC+GGG - chr7_2:69679089-69679108 None:intergenic 30.0%
AGAAAGAGAGAGAGAAAATA+GGG - chr7_2:69679105-69679124 None:intergenic 30.0%
! AAATTGAAGCATTCAGAATC+TGG - chr7_2:69679148-69679167 None:intergenic 30.0%
AAGTCAAATGGAAAGTTTCT+AGG - chr7_2:69679216-69679235 None:intergenic 30.0%
TAGAAACTTTCCATTTGACT+TGG + chr7_2:69679215-69679234 Msa1072550:intron 30.0%
ATGATGCTACATAAATCTCA+AGG + chr7_2:69679396-69679415 Msa1072550:five_prime_UTR 30.0%
!!! GTGTTTAGGTTTTAGAAGTT+AGG + chr7_2:69679649-69679668 Msa1072550:intron 30.0%
!!! TTTAGGTTTTAGAAGTTAGG+AGG + chr7_2:69679652-69679671 Msa1072550:intron 30.0%
AAGCTACAAAGTTTAACTGT+TGG + chr7_2:69679771-69679790 Msa1072550:intron 30.0%
TAGTATCATTGTAGGTATGT+CGG - chr7_2:69679822-69679841 None:intergenic 30.0%
CCTATGTTTAGTATCATTGT+AGG - chr7_2:69679830-69679849 None:intergenic 30.0%
CCTACAATGATACTAAACAT+AGG + chr7_2:69679827-69679846 Msa1072550:intron 30.0%
ATAGGCTAAACCTTCTAAAT+TGG + chr7_2:69679845-69679864 Msa1072550:intron 30.0%
TAGGCTAAACCTTCTAAATT+GGG + chr7_2:69679846-69679865 Msa1072550:intron 30.0%
! AAAAAGGGTTTAGACTTGTT+TGG - chr7_2:69679985-69680004 None:intergenic 30.0%
TTGCTAGAACATGCTAAAAA+GGG - chr7_2:69680000-69680019 None:intergenic 30.0%
ATTGCTAGAACATGCTAAAA+AGG - chr7_2:69680001-69680020 None:intergenic 30.0%
!! ATTTTGTTACTTGCATTCCA+AGG + chr7_2:69680193-69680212 Msa1072550:intron 30.0%
ACCAATTGACAATACAATGT+TGG + chr7_2:69680228-69680247 Msa1072550:intron 30.0%
TCCAACATTGTATTGTCAAT+TGG - chr7_2:69680232-69680251 None:intergenic 30.0%
AATACAATGTTGGAGTGTAT+GGG + chr7_2:69680238-69680257 Msa1072550:intron 30.0%
GGAATCAAAAAGAAATTGCA+AGG - chr7_2:69680434-69680453 None:intergenic 30.0%
ATTCTAACAAGGACTAAAAC+TGG - chr7_2:69680479-69680498 None:intergenic 30.0%
!! GTGGCTTTATTAATGAAATG+TGG + chr7_2:69680534-69680553 Msa1072550:intron 30.0%
! TCTTTGCTCTTATTTAGAGA+TGG + chr7_2:69681110-69681129 Msa1072550:intron 30.0%
ATGTTATGGAAGAAACTTGT+AGG + chr7_2:69681157-69681176 Msa1072550:intron 30.0%
GCAACATCAACATTTCTATA+AGG + chr7_2:69681382-69681401 Msa1072550:intron 30.0%
TGGAAGAAGCTTAAATGTTA+GGG + chr7_2:69681435-69681454 Msa1072550:intron 30.0%
GAACCAAAAAGAAAATCTAG+AGG + chr7_2:69681465-69681484 Msa1072550:intron 30.0%
! AAGCCTCTAGATTTTCTTTT+TGG - chr7_2:69681471-69681490 None:intergenic 30.0%
AATCTTCAGAGTCATTATGA+AGG - chr7_2:69681566-69681585 None:intergenic 30.0%
! AACCATTTTGGACAACTTAT+GGG - chr7_2:69681747-69681766 None:intergenic 30.0%
!! ATTCCTTAACTACTTTTCTC+TGG + chr7_2:69681809-69681828 Msa1072550:intron 30.0%
!! TTCCTTAACTACTTTTCTCT+GGG + chr7_2:69681810-69681829 Msa1072550:intron 30.0%
TAAAAAAAGGTTCTGCTAAC+TGG - chr7_2:69681838-69681857 None:intergenic 30.0%
GATGTATAATCATTGATGGA+AGG + chr7_2:69681882-69681901 Msa1072550:intron 30.0%
TGTATAATCATTGATGGAAG+GGG + chr7_2:69681884-69681903 Msa1072550:intron 30.0%
AGAAAAGGTAAGAAAAAGTG+TGG - chr7_2:69681910-69681929 None:intergenic 30.0%
GGTAAAAGCAAAAACAGAAA+AGG - chr7_2:69681925-69681944 None:intergenic 30.0%
TTAGCTAAACTATTGTCATC+TGG - chr7_2:69681946-69681965 None:intergenic 30.0%
TCATGTTAAAAGCCATTTAC+AGG + chr7_2:69682059-69682078 Msa1072550:five_prime_UTR 30.0%
CACATATTGATACCTGTAAA+TGG - chr7_2:69682074-69682093 None:intergenic 30.0%
CATTTACAGGTATCAATATG+TGG + chr7_2:69682072-69682091 Msa1072550:intron 30.0%
! CAGATTCTAAAGATGAGAAA+AGG + chr7_2:69682338-69682357 Msa1072550:CDS 30.0%
AAAGATGAGAAAAGGAATTC+TGG + chr7_2:69682346-69682365 Msa1072550:CDS 30.0%
TAACTGATTAAGCATCCATA+TGG + chr7_2:69682855-69682874 Msa1072550:intron 30.0%
AAGAGCGATCATTACATTAA+TGG + chr7_2:69682944-69682963 Msa1072550:intron 30.0%
! AATTAGCTTCTAATTTGCCT+CGG + chr7_2:69683189-69683208 Msa1072550:intron 30.0%
ATATCAAGGAAGTAAATGCA+CGG - chr7_2:69683309-69683328 None:intergenic 30.0%
ATTTACTTCCTTGATATTCC+AGG + chr7_2:69683312-69683331 Msa1072550:intron 30.0%
!! TTTGTAATTGCTTTTGAACC+TGG - chr7_2:69683333-69683352 None:intergenic 30.0%
TCAACTTGTGGTATATAACT+TGG + chr7_2:69684034-69684053 Msa1072550:three_prime_UTR 30.0%
GTAATGAGATTGAGGATTAG+TGG - chr7_2:69679061-69679080 None:intergenic 35.0%
GAGAAAGAGAGAGAGAAAAT+AGG - chr7_2:69679106-69679125 None:intergenic 35.0%
!! AATCTGGTTTCGAATTTTGC+GGG - chr7_2:69679132-69679151 None:intergenic 35.0%
!! GAATCTGGTTTCGAATTTTG+CGG - chr7_2:69679133-69679152 None:intergenic 35.0%
! TTCAATTTTAAGCTTCTCGC+TGG + chr7_2:69679160-69679179 Msa1072550:five_prime_UTR 35.0%
GTATCATGCAAAGAAGTTTC+CGG + chr7_2:69679365-69679384 Msa1072550:five_prime_UTR 35.0%
ATGCTACATAAATCTCAAGG+CGG + chr7_2:69679399-69679418 Msa1072550:five_prime_UTR 35.0%
GAAAAGAAATACCCACTATC+TGG - chr7_2:69679576-69679595 None:intergenic 35.0%
TAACTGTTGGAAAATCACAG+TGG + chr7_2:69679784-69679803 Msa1072550:intron 35.0%
AACTGTTGGAAAATCACAGT+GGG + chr7_2:69679785-69679804 Msa1072550:intron 35.0%
AAATAAGTAATGCACGCGTA+AGG + chr7_2:69680074-69680093 Msa1072550:intron 35.0%
AATAAGTAATGCACGCGTAA+GGG + chr7_2:69680075-69680094 Msa1072550:intron 35.0%
CAATACAATGTTGGAGTGTA+TGG + chr7_2:69680237-69680256 Msa1072550:intron 35.0%
! GGATTGAGTTCAATTTTGTG+TGG + chr7_2:69680305-69680324 Msa1072550:intron 35.0%
! GAATGTTACCATTTGGTCTT+GGG + chr7_2:69680787-69680806 Msa1072550:intron 35.0%
AAACGGTAAAGAAGCAGTTT+AGG + chr7_2:69680839-69680858 Msa1072550:intron 35.0%
AACGGTAAAGAAGCAGTTTA+GGG + chr7_2:69680840-69680859 Msa1072550:intron 35.0%
GTACCTATTCCAGAATTTCT+CGG + chr7_2:69680928-69680947 Msa1072550:intron 35.0%
TACCTATTCCAGAATTTCTC+GGG + chr7_2:69680929-69680948 Msa1072550:intron 35.0%
CAGGGTAACTAAGAATGTTA+TGG + chr7_2:69681143-69681162 Msa1072550:intron 35.0%
TCAGTTTATGAAAGGGAGAA+AGG + chr7_2:69681225-69681244 Msa1072550:intron 35.0%
CAGTTTATGAAAGGGAGAAA+GGG + chr7_2:69681226-69681245 Msa1072550:intron 35.0%
!!! AGAAAGGGCTTTGTTTTAGT+TGG + chr7_2:69681241-69681260 Msa1072550:intron 35.0%
TATAAGGTCCGATTTCAACA+AGG + chr7_2:69681398-69681417 Msa1072550:intron 35.0%
GTGGAAGAAGCTTAAATGTT+AGG + chr7_2:69681434-69681453 Msa1072550:intron 35.0%
! TGATATCTGCACAACCATTT+TGG + chr7_2:69681596-69681615 Msa1072550:intron 35.0%
! GATATCTGCACAACCATTTT+GGG + chr7_2:69681597-69681616 Msa1072550:intron 35.0%
GAAAAAAGGTTGTCCCAAAA+TGG - chr7_2:69681613-69681632 None:intergenic 35.0%
CTCAAAAGATGAGGGAAAAA+AGG - chr7_2:69681627-69681646 None:intergenic 35.0%
! CAACCATTTTGGACAACTTA+TGG - chr7_2:69681748-69681767 None:intergenic 35.0%
ATCACTCTCAAAACACCTTT+CGG - chr7_2:69682015-69682034 None:intergenic 35.0%
!!! AAAGGTGTTTTGAGAGTGAT+GGG + chr7_2:69682015-69682034 Msa1072550:five_prime_UTR 35.0%
!!! GTTGACTCAGAGTTCTTTTT+TGG + chr7_2:69682310-69682329 Msa1072550:CDS 35.0%
AATCACTCAAATCAGCCATA+TGG - chr7_2:69682873-69682892 None:intergenic 35.0%
! CTTTTGAACCTGGAATATCA+AGG - chr7_2:69683323-69683342 None:intergenic 35.0%
ATACTTGCAGAAGATCATAG+AGG + chr7_2:69683375-69683394 Msa1072550:CDS 35.0%
GAGAATTGATGAAGGTTCAA+AGG + chr7_2:69683534-69683553 Msa1072550:CDS 35.0%
ATTGATGAAGGTTCAAAGGA+TGG + chr7_2:69683538-69683557 Msa1072550:CDS 35.0%
AGCAGTCTTTCTTGTAACTT+GGG - chr7_2:69683575-69683594 None:intergenic 35.0%
CAGAAGAATGATTGTGATGT+TGG + chr7_2:69683595-69683614 Msa1072550:CDS 35.0%
TCATACAAGTTTGGATCCAA+AGG - chr7_2:69683622-69683641 None:intergenic 35.0%
TTGGAAACAGAAAATGACGA+CGG + chr7_2:69683667-69683686 Msa1072550:CDS 35.0%
ATTGACATGCATTGTACATG+TGG + chr7_2:69683893-69683912 Msa1072550:three_prime_UTR 35.0%
TGACAAGCTTGATATTGACA+TGG - chr7_2:69683984-69684003 None:intergenic 35.0%
TCAAGCTTGTCAATTAGTGA+CGG + chr7_2:69683992-69684011 Msa1072550:three_prime_UTR 35.0%
TGATCTTTGTAGTCAACTTG+TGG + chr7_2:69684022-69684041 Msa1072550:three_prime_UTR 35.0%
!! ACGTGTCGTTCGTACTTTTT+GGG - chr7_2:69678883-69678902 None:intergenic 40.0%
!! TTGGAAGGTGTCGTTAACAA+TGG - chr7_2:69678928-69678947 None:intergenic 40.0%
! GGGAAAGTGTAATGAGATTG+AGG - chr7_2:69679069-69679088 None:intergenic 40.0%
GTGAACAGTTTGCAAATGGT+GGG + chr7_2:69679430-69679449 Msa1072550:five_prime_UTR 40.0%
TGAACAGTTTGCAAATGGTG+GGG + chr7_2:69679431-69679450 Msa1072550:five_prime_UTR 40.0%
GTGAAAAATGTTCAACCTGC+TGG + chr7_2:69679471-69679490 Msa1072550:five_prime_UTR 40.0%
AAAAATGTTCAACCTGCTGG+AGG + chr7_2:69679474-69679493 Msa1072550:five_prime_UTR 40.0%
!! GCGTAATAGCATCGACAAAA+CGG - chr7_2:69679542-69679561 None:intergenic 40.0%
TTTAGAAGTTAGGAGGAGTG+TGG + chr7_2:69679659-69679678 Msa1072550:intron 40.0%
TTGTAGGTATGTCGGAATCA+CGG - chr7_2:69679814-69679833 None:intergenic 40.0%
CTAGGTTCTCCCAATTTAGA+AGG - chr7_2:69679858-69679877 None:intergenic 40.0%
CTTGAAGTCTAAACCCTTTC+TGG + chr7_2:69679929-69679948 Msa1072550:intron 40.0%
! AGGGTTTAGGATACCAGAAA+GGG - chr7_2:69679945-69679964 None:intergenic 40.0%
! AGGGTTTAGACTTGTTTGGA+AGG - chr7_2:69679981-69680000 None:intergenic 40.0%
CTGCAAGACTGTAACTACAT+GGG + chr7_2:69680161-69680180 Msa1072550:intron 40.0%
TGGAAGGTCAGATTCTAACA+AGG - chr7_2:69680490-69680509 None:intergenic 40.0%
! ACCTTCCAGAAATGCTGATT+TGG + chr7_2:69680502-69680521 Msa1072550:intron 40.0%
GCTGCTGCGAATACAATTTA+GGG - chr7_2:69680653-69680672 None:intergenic 40.0%
AGCTGCTGCGAATACAATTT+AGG - chr7_2:69680654-69680673 None:intergenic 40.0%
CCTAGATTGAATCTCGTGAT+GGG + chr7_2:69680704-69680723 Msa1072550:intron 40.0%
GGAATGTTACCATTTGGTCT+TGG + chr7_2:69680786-69680805 Msa1072550:intron 40.0%
ACTGCTTCTTTACCGTTTGA+GGG - chr7_2:69680837-69680856 None:intergenic 40.0%
AACTGCTTCTTTACCGTTTG+AGG - chr7_2:69680838-69680857 None:intergenic 40.0%
TTAGGGTACAAGAATTGACG+AGG + chr7_2:69680857-69680876 Msa1072550:intron 40.0%
TAGGGTACAAGAATTGACGA+GGG + chr7_2:69680858-69680877 Msa1072550:intron 40.0%
!! CAACAGAAATTGGTCTTGTG+TGG - chr7_2:69680888-69680907 None:intergenic 40.0%
!! AAGAAGAGTGCTAAGCTTGT+TGG + chr7_2:69681183-69681202 Msa1072550:intron 40.0%
!! AGAAGAGTGCTAAGCTTGTT+GGG + chr7_2:69681184-69681203 Msa1072550:intron 40.0%
TCCGATTTCAACAAGGACAA+GGG + chr7_2:69681405-69681424 Msa1072550:intron 40.0%
AGAAGCTTAAATGTTAGGGC+TGG + chr7_2:69681439-69681458 Msa1072550:intron 40.0%
GTCCCATAAGTTGTCCAAAA+TGG + chr7_2:69681742-69681761 Msa1072550:intron 40.0%
TGCCCAGAGAAAAGTAGTTA+AGG - chr7_2:69681815-69681834 None:intergenic 40.0%
!!! GAAAGGTGTTTTGAGAGTGA+TGG + chr7_2:69682014-69682033 Msa1072550:five_prime_UTR 40.0%
ACATGATAAATGGTCAGTCC+AGG - chr7_2:69682045-69682064 None:intergenic 40.0%
ACGAAGCGCAAGAAAAAACA+AGG - chr7_2:69682238-69682257 None:intergenic 40.0%
! AATTCTGGAGACAGCATTTC+TGG + chr7_2:69682361-69682380 Msa1072550:CDS 40.0%
AAAACAACTAAGACACCCAC+GGG - chr7_2:69682399-69682418 None:intergenic 40.0%
GAAAACAACTAAGACACCCA+CGG - chr7_2:69682400-69682419 None:intergenic 40.0%
!! AGATAAGTGATGGATTACCC+AGG - chr7_2:69683137-69683156 None:intergenic 40.0%
CTTCTATGAGTGAGCATTTC+TGG + chr7_2:69683272-69683291 Msa1072550:intron 40.0%
!! TGAGTGAGCATTTCTGGTAA+TGG + chr7_2:69683278-69683297 Msa1072550:intron 40.0%
ACAAATGAGAATTGAAGCCC+AGG + chr7_2:69683348-69683367 Msa1072550:CDS 40.0%
CAAATGAGAATTGAAGCCCA+GGG + chr7_2:69683349-69683368 Msa1072550:CDS 40.0%
CTTCTGCAAGTATTTACCCT+GGG - chr7_2:69683368-69683387 None:intergenic 40.0%
TCTTCTGCAAGTATTTACCC+TGG - chr7_2:69683369-69683388 None:intergenic 40.0%
ATAGAGGAACAGCAGAAACT+AGG + chr7_2:69683391-69683410 Msa1072550:CDS 40.0%
! TTTTGCTTATCATGGGACAG+CGG - chr7_2:69683445-69683464 None:intergenic 40.0%
GAGCAGTCTTTCTTGTAACT+TGG - chr7_2:69683576-69683595 None:intergenic 40.0%
TGATTGTGATGTTGGTCCTT+TGG + chr7_2:69683603-69683622 Msa1072550:CDS 40.0%
GCATCGTCTTCATACAAGTT+TGG - chr7_2:69683631-69683650 None:intergenic 40.0%
AACTTGTATGAAGACGATGC+TGG + chr7_2:69683631-69683650 Msa1072550:CDS 40.0%
! TGCTGGCTATGGATTTGATT+TGG + chr7_2:69683648-69683667 Msa1072550:CDS 40.0%
! ATTTCTGTTGACTGAGAGTG+CGG - chr7_2:69683871-69683890 None:intergenic 40.0%
TCTTTCGAGCCTTGAGAATG+AGG + chr7_2:69678807-69678826 Msa1072550:intron 45.0%
CTTTCGAGCCTTGAGAATGA+GGG + chr7_2:69678808-69678827 Msa1072550:intron 45.0%
TTACCTCTCCCTCATTCTCA+AGG - chr7_2:69678819-69678838 None:intergenic 45.0%
GAGAATGAGGGAGAGGTAAA+CGG + chr7_2:69678820-69678839 Msa1072550:intron 45.0%
!! CACGTGTCGTTCGTACTTTT+TGG - chr7_2:69678884-69678903 None:intergenic 45.0%
! GTGTCGTTAACAATGGTGGA+GGG - chr7_2:69678921-69678940 None:intergenic 45.0%
!! GAAGGTGTCGTTAACAATGG+TGG - chr7_2:69678925-69678944 None:intergenic 45.0%
!! TGAGCGTTGAAATGAACGGA+CGG - chr7_2:69678962-69678981 None:intergenic 45.0%
TCATGCAAAGAAGTTTCCGG+AGG + chr7_2:69679368-69679387 Msa1072550:five_prime_UTR 45.0%
CTACATAAATCTCAAGGCGG+TGG + chr7_2:69679402-69679421 Msa1072550:five_prime_UTR 45.0%
GGTGGTGAACAGTTTGCAAA+TGG + chr7_2:69679426-69679445 Msa1072550:five_prime_UTR 45.0%
GGTGAACAGTTTGCAAATGG+TGG + chr7_2:69679429-69679448 Msa1072550:five_prime_UTR 45.0%
GAACAGTTTGCAAATGGTGG+GGG + chr7_2:69679432-69679451 Msa1072550:five_prime_UTR 45.0%
! TGTGGAGGGAAAGGGATTTT+TGG + chr7_2:69679677-69679696 Msa1072550:intron 45.0%
!! GAGGGAAAGGGATTTTTGGA+TGG + chr7_2:69679681-69679700 Msa1072550:intron 45.0%
!!! CCTGTGCTGTGCTTTTTTCT+AGG - chr7_2:69679876-69679895 None:intergenic 45.0%
! CCTAGAAAAAAGCACAGCAC+AGG + chr7_2:69679873-69679892 Msa1072550:intron 45.0%
! AGAAAAAAGCACAGCACAGG+AGG + chr7_2:69679876-69679895 Msa1072550:intron 45.0%
! GAGGGTTTAGGATACCAGAA+AGG - chr7_2:69679946-69679965 None:intergenic 45.0%
! TAGACTTGTTTGGAAGGCGA+GGG - chr7_2:69679975-69679994 None:intergenic 45.0%
! TTAGACTTGTTTGGAAGGCG+AGG - chr7_2:69679976-69679995 None:intergenic 45.0%
CCATGTAGTTACAGTCTTGC+AGG - chr7_2:69680163-69680182 None:intergenic 45.0%
CCTGCAAGACTGTAACTACA+TGG + chr7_2:69680160-69680179 Msa1072550:intron 45.0%
TTGGTGCACAACTCAAACCT+TGG - chr7_2:69680213-69680232 None:intergenic 45.0%
! GCCAAATCAGCATTTCTGGA+AGG - chr7_2:69680506-69680525 None:intergenic 45.0%
GCATGCCAAATCAGCATTTC+TGG - chr7_2:69680510-69680529 None:intergenic 45.0%
GCCTAGATTGAATCTCGTGA+TGG + chr7_2:69680703-69680722 Msa1072550:intron 45.0%
CCCATCACGAGATTCAATCT+AGG - chr7_2:69680707-69680726 None:intergenic 45.0%
!! ATTGAATCTCGTGATGGGTC+AGG + chr7_2:69680709-69680728 Msa1072550:intron 45.0%
GAGGGAGGAATGTTACCATT+TGG + chr7_2:69680780-69680799 Msa1072550:intron 45.0%
TTCTTTACCGTTTGAGGGAC+CGG - chr7_2:69680832-69680851 None:intergenic 45.0%
AGGGTACAAGAATTGACGAG+GGG + chr7_2:69680859-69680878 Msa1072550:intron 45.0%
AGTGAGGACGCAACAGAAAT+TGG - chr7_2:69680898-69680917 None:intergenic 45.0%
AGGTACATAACTCGACAGTG+AGG - chr7_2:69680914-69680933 None:intergenic 45.0%
!! CTCCCGAGAAATTCTGGAAT+AGG - chr7_2:69680934-69680953 None:intergenic 45.0%
CTATTCCAGAATTTCTCGGG+AGG + chr7_2:69680932-69680951 Msa1072550:intron 45.0%
GATTGCGTGATACACGAAGA+AGG + chr7_2:69681051-69681070 Msa1072550:intron 45.0%
!!! GAAGGTTTTGTTTGCTCGCA+TGG + chr7_2:69681069-69681088 Msa1072550:intron 45.0%
CAAAGAAGCCCATCATCATC+GGG - chr7_2:69681096-69681115 None:intergenic 45.0%
GCAAAGAAGCCCATCATCAT+CGG - chr7_2:69681097-69681116 None:intergenic 45.0%
TAGAGATGGTCATTGAGTGC+AGG + chr7_2:69681124-69681143 Msa1072550:intron 45.0%
AGAGATGGTCATTGAGTGCA+GGG + chr7_2:69681125-69681144 Msa1072550:intron 45.0%
GTCCGATTTCAACAAGGACA+AGG + chr7_2:69681404-69681423 Msa1072550:intron 45.0%
GCCCTTGTCCTTGTTGAAAT+CGG - chr7_2:69681409-69681428 None:intergenic 45.0%
ACAAGGACAAGGGCTAAAAG+TGG + chr7_2:69681415-69681434 Msa1072550:intron 45.0%
!! CTACATGTAGAAGTATCGCC+TGG + chr7_2:69682173-69682192 Msa1072550:intron 45.0%
AAGTACTTGCCTGAATCACC+AGG + chr7_2:69682198-69682217 Msa1072550:five_prime_UTR 45.0%
TTACCATCACCTGGTGATTC+AGG - chr7_2:69682210-69682229 None:intergenic 45.0%
! GAATCACCAGGTGATGGTAA+AGG + chr7_2:69682210-69682229 Msa1072550:five_prime_UTR 45.0%
AAACAACTAAGACACCCACG+GGG - chr7_2:69682398-69682417 None:intergenic 45.0%
ATAAAACAATCGTGCCCTGC+AGG + chr7_2:69682472-69682491 Msa1072550:intron 45.0%
TAAAACAATCGTGCCCTGCA+GGG + chr7_2:69682473-69682492 Msa1072550:intron 45.0%
!! TTGATTTGCAATCCCCTGCA+GGG - chr7_2:69682489-69682508 None:intergenic 45.0%
!! ATTGATTTGCAATCCCCTGC+AGG - chr7_2:69682490-69682509 None:intergenic 45.0%
AGTCATGCATCTTGTGTCCT+GGG + chr7_2:69683117-69683136 Msa1072550:intron 45.0%
! TTCTAATTTGCCTCGGACTC+AGG + chr7_2:69683196-69683215 Msa1072550:intron 45.0%
ACACTTAAATCCTGAGTCCG+AGG - chr7_2:69683209-69683228 None:intergenic 45.0%
GCAGAAACTAGGTAGTACCT+TGG + chr7_2:69683402-69683421 Msa1072550:CDS 45.0%
!!! GGGCTGGTTTTGCTTATCAT+GGG - chr7_2:69683452-69683471 None:intergenic 45.0%
! TATGAAGACGATGCTGGCTA+TGG + chr7_2:69683637-69683656 Msa1072550:CDS 45.0%
! TTTCTGTTGACTGAGAGTGC+GGG - chr7_2:69683870-69683889 None:intergenic 45.0%
TACATGTGGCGATGAATGCT+GGG + chr7_2:69683907-69683926 Msa1072550:three_prime_UTR 45.0%
!! GGTGTCGTTAACAATGGTGG+AGG - chr7_2:69678922-69678941 None:intergenic 50.0%
!!! ACGGCGGCGTTTTAATTGGA+AGG - chr7_2:69678943-69678962 None:intergenic 50.0%
TGTAGCATCATCGTCTCCTC+CGG - chr7_2:69679387-69679406 None:intergenic 50.0%
CATAAATCTCAAGGCGGTGG+TGG + chr7_2:69679405-69679424 Msa1072550:five_prime_UTR 50.0%
! GCAAATGGTGGGGGTTTGAA+TGG + chr7_2:69679441-69679460 Msa1072550:five_prime_UTR 50.0%
AATGTTCAACCTGCTGGAGG+TGG + chr7_2:69679477-69679496 Msa1072550:five_prime_UTR 50.0%
GTCGATGCTATTACGCAGCT+TGG + chr7_2:69679546-69679565 Msa1072550:five_prime_UTR 50.0%
GATGCTATTACGCAGCTTGG+TGG + chr7_2:69679549-69679568 Msa1072550:five_prime_UTR 50.0%
! AGCTTGGTGGACCAGATAGT+GGG + chr7_2:69679562-69679581 Msa1072550:intron 50.0%
! AGAAGTTAGGAGGAGTGTGG+AGG + chr7_2:69679662-69679681 Msa1072550:intron 50.0%
! GAAGTTAGGAGGAGTGTGGA+GGG + chr7_2:69679663-69679682 Msa1072550:intron 50.0%
! AAAAAGCACAGCACAGGAGG+AGG + chr7_2:69679879-69679898 Msa1072550:intron 50.0%
AGGAGGAGGATGACTTTGGA+GGG + chr7_2:69679893-69679912 Msa1072550:intron 50.0%
! AGACTTGTTTGGAAGGCGAG+GGG - chr7_2:69679974-69679993 None:intergenic 50.0%
!! GCTGATTTGGCATGCTGATG+TGG + chr7_2:69680515-69680534 Msa1072550:intron 50.0%
GGGTACAAGAATTGACGAGG+GGG + chr7_2:69680860-69680879 Msa1072550:intron 50.0%
GTTCTCCTCCCGAGAAATTC+TGG - chr7_2:69680940-69680959 None:intergenic 50.0%
ATGACAGGAGCAACACCGAA+AGG + chr7_2:69681997-69682016 Msa1072550:intron 50.0%
ATTCAGGCAAGTACTTCGCC+AGG - chr7_2:69682194-69682213 None:intergenic 50.0%
TTGCCTGAATCACCAGGTGA+TGG + chr7_2:69682204-69682223 Msa1072550:five_prime_UTR 50.0%
! AAGGCACCTTTACCATCACC+TGG - chr7_2:69682219-69682238 None:intergenic 50.0%
!! AGGTAGAGGCGTCAAAGTGA+AGG - chr7_2:69682441-69682460 None:intergenic 50.0%
AAAACAATCGTGCCCTGCAG+GGG + chr7_2:69682474-69682493 Msa1072550:intron 50.0%
TGACGCACTACGAATGCAGA+TGG + chr7_2:69682509-69682528 Msa1072550:intron 50.0%
ACGTCTGCATGAACAGCTTG+AGG + chr7_2:69682542-69682561 Msa1072550:intron 50.0%
GAGTCATGCATCTTGTGTCC+TGG + chr7_2:69683116-69683135 Msa1072550:intron 50.0%
AGGTAGTACCTTGGCAGCAT+CGG + chr7_2:69683411-69683430 Msa1072550:CDS 50.0%
AAGTGTTTCCGATGCTGCCA+AGG - chr7_2:69683422-69683441 None:intergenic 50.0%
!!! GGGGCTGGTTTTGCTTATCA+TGG - chr7_2:69683453-69683472 None:intergenic 50.0%
! AGACCCAGAAGGCTCTGATA+GGG - chr7_2:69683473-69683492 None:intergenic 50.0%
! TAGACCCAGAAGGCTCTGAT+AGG - chr7_2:69683474-69683493 None:intergenic 50.0%
!! GGGAGAAAAAGTGCCTGCAA+GGG - chr7_2:69683503-69683522 None:intergenic 50.0%
GTGTTTACCACTCTCACGAC+AGG - chr7_2:69683848-69683867 None:intergenic 50.0%
GTACATGTGGCGATGAATGC+TGG + chr7_2:69683906-69683925 Msa1072550:three_prime_UTR 50.0%
GAGCCTTGAGAATGAGGGAG+AGG + chr7_2:69678813-69678832 Msa1072550:intron 55.0%
AACGACACGTGACAAACGCG+TGG + chr7_2:69678893-69678912 Msa1072550:intron 55.0%
ACGACACGTGACAAACGCGT+GGG + chr7_2:69678894-69678913 Msa1072550:intron 55.0%
!! ACGGACGGCGGCGTTTTAAT+TGG - chr7_2:69678947-69678966 None:intergenic 55.0%
GCGTTGAAATGAACGGACGG+CGG - chr7_2:69678959-69678978 None:intergenic 55.0%
! AAATCTCAAGGCGGTGGTGG+TGG + chr7_2:69679408-69679427 Msa1072550:five_prime_UTR 55.0%
TTCAACCTGCTGGAGGTGGT+GGG + chr7_2:69679481-69679500 Msa1072550:five_prime_UTR 55.0%
! CAGCTTGGTGGACCAGATAG+TGG + chr7_2:69679561-69679580 Msa1072550:intron 55.0%
! TAGGAGGAGTGTGGAGGGAA+AGG + chr7_2:69679668-69679687 Msa1072550:intron 55.0%
! AGGAGGAGTGTGGAGGGAAA+GGG + chr7_2:69679669-69679688 Msa1072550:intron 55.0%
GCACAGGAGGAGGATGACTT+TGG + chr7_2:69679889-69679908 Msa1072550:intron 55.0%
CAGGAGGAGGATGACTTTGG+AGG + chr7_2:69679892-69679911 Msa1072550:intron 55.0%
! GACTTGTTTGGAAGGCGAGG+GGG - chr7_2:69679973-69679992 None:intergenic 55.0%
AGTCCCGATACGTGACGAAG+AGG + chr7_2:69680761-69680780 Msa1072550:intron 55.0%
GTCCCGATACGTGACGAAGA+GGG + chr7_2:69680762-69680781 Msa1072550:intron 55.0%
CTCCCTCTTCGTCACGTATC+GGG - chr7_2:69680767-69680786 None:intergenic 55.0%
CCTCCCTCTTCGTCACGTAT+CGG - chr7_2:69680768-69680787 None:intergenic 55.0%
CGGTGGATCCCAAGACCAAA+TGG - chr7_2:69680798-69680817 None:intergenic 55.0%
! TGGTCTTGGGATCCACCGAT+CGG + chr7_2:69680800-69680819 Msa1072550:intron 55.0%
AGGAGAACAGTTGCCGTCAG+TGG + chr7_2:69680952-69680971 Msa1072550:intron 55.0%
CCGCTACGAATCACCACTGA+CGG - chr7_2:69680968-69680987 None:intergenic 55.0%
CCGTCAGTGGTGATTCGTAG+CGG + chr7_2:69680965-69680984 Msa1072550:intron 55.0%
TCGCATGGTCCCGATGATGA+TGG + chr7_2:69681084-69681103 Msa1072550:intron 55.0%
CGCATGGTCCCGATGATGAT+GGG + chr7_2:69681085-69681104 Msa1072550:intron 55.0%
!! TTGAGAGTGATGGGTGTGCC+TGG + chr7_2:69682024-69682043 Msa1072550:five_prime_UTR 55.0%
CGCACTACGAATGCAGATGG+AGG + chr7_2:69682512-69682531 Msa1072550:intron 55.0%
AGCCCCTATCAGAGCCTTCT+GGG + chr7_2:69683467-69683486 Msa1072550:CDS 55.0%
! GACCCAGAAGGCTCTGATAG+GGG - chr7_2:69683472-69683491 None:intergenic 55.0%
! AGGGCATCACTAGACCCAGA+AGG - chr7_2:69683484-69683503 None:intergenic 55.0%
!! GGGGAGAAAAAGTGCCTGCA+AGG - chr7_2:69683504-69683523 None:intergenic 55.0%
CTTCTCTCCTGTCGTGAGAG+TGG + chr7_2:69683838-69683857 Msa1072550:three_prime_UTR 55.0%
GTTCAACCTGCTGGAGGTGG+TGG + chr7_2:69679480-69679499 Msa1072550:five_prime_UTR 60.0%
GTGGGAAGCAGCGTTTGCGT+TGG + chr7_2:69679499-69679518 Msa1072550:five_prime_UTR 60.0%
GCAGCGTTTGCGTTGGACGT+CGG + chr7_2:69679506-69679525 Msa1072550:five_prime_UTR 60.0%
GTTTGGAAGGCGAGGGGGAA+GGG - chr7_2:69679968-69679987 None:intergenic 60.0%
TGTTTGGAAGGCGAGGGGGA+AGG - chr7_2:69679969-69679988 None:intergenic 60.0%
CCGATACGTGACGAAGAGGG+AGG + chr7_2:69680765-69680784 Msa1072550:intron 60.0%
TTGGGATCCACCGATCGGCT+TGG + chr7_2:69680805-69680824 Msa1072550:intron 60.0%
!! ATCCACCGATCGGCTTGGTC+CGG + chr7_2:69680810-69680829 Msa1072550:intron 60.0%
GCTTGGTCCGGTCCCTCAAA+CGG + chr7_2:69680822-69680841 Msa1072550:intron 60.0%
!! TGGCGCTGATTCTTCCCCGT+GGG + chr7_2:69682381-69682400 Msa1072550:CDS 60.0%
! CAGAAGGCTCTGATAGGGGC+TGG - chr7_2:69683468-69683487 None:intergenic 60.0%
CAGCCCCTATCAGAGCCTTC+TGG + chr7_2:69683466-69683485 Msa1072550:CDS 60.0%
GGGTCTAGTGATGCCCTTGC+AGG + chr7_2:69683487-69683506 Msa1072550:CDS 60.0%
TGCTTCCCACCACCTCCAGC+AGG - chr7_2:69679489-69679508 None:intergenic 65.0%
CGAGGGGGAAGGGAGGGTTT+AGG - chr7_2:69679958-69679977 None:intergenic 65.0%
AGGGACCGGACCAAGCCGAT+CGG - chr7_2:69680818-69680837 None:intergenic 65.0%
!! CTGGCGCTGATTCTTCCCCG+TGG + chr7_2:69682380-69682399 Msa1072550:CDS 65.0%
GGAAGGCGAGGGGGAAGGGA+GGG - chr7_2:69679964-69679983 None:intergenic 70.0%
TGGAAGGCGAGGGGGAAGGG+AGG - chr7_2:69679965-69679984 None:intergenic 70.0%
GACCGGACCAAGCCGATCGG+TGG - chr7_2:69680815-69680834 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 69678624 69684107 69678624 ID=Msa1072550;Name=Msa1072550
chr7_2 mRNA 69678624 69684107 69678624 ID=Msa1072550-mRNA-1;Parent=Msa1072550;Name=Msa1072550-mRNA-1;_AED=0.11;_eAED=0.11;_QI=629|0.66|0.85|0.85|0.5|0.42|7|399|168
chr7_2 exon 69678624 69678687 69678624 ID=Msa1072550-mRNA-1:exon:15491;Parent=Msa1072550-mRNA-1
chr7_2 exon 69679015 69679181 69679015 ID=Msa1072550-mRNA-1:exon:15492;Parent=Msa1072550-mRNA-1
chr7_2 exon 69679356 69679579 69679356 ID=Msa1072550-mRNA-1:exon:15493;Parent=Msa1072550-mRNA-1
chr7_2 exon 69682004 69682080 69682004 ID=Msa1072550-mRNA-1:exon:15494;Parent=Msa1072550-mRNA-1
chr7_2 exon 69682183 69682402 69682183 ID=Msa1072550-mRNA-1:exon:15495;Parent=Msa1072550-mRNA-1
chr7_2 exon 69683096 69683104 69683096 ID=Msa1072550-mRNA-1:exon:15496;Parent=Msa1072550-mRNA-1
chr7_2 exon 69683334 69684107 69683334 ID=Msa1072550-mRNA-1:exon:15497;Parent=Msa1072550-mRNA-1
chr7_2 five_prime_UTR 69678624 69678687 69678624 ID=Msa1072550-mRNA-1:five_prime_utr;Parent=Msa1072550-mRNA-1
chr7_2 five_prime_UTR 69679015 69679181 69679015 ID=Msa1072550-mRNA-1:five_prime_utr;Parent=Msa1072550-mRNA-1
chr7_2 five_prime_UTR 69679356 69679579 69679356 ID=Msa1072550-mRNA-1:five_prime_utr;Parent=Msa1072550-mRNA-1
chr7_2 five_prime_UTR 69682004 69682080 69682004 ID=Msa1072550-mRNA-1:five_prime_utr;Parent=Msa1072550-mRNA-1
chr7_2 five_prime_UTR 69682183 69682279 69682183 ID=Msa1072550-mRNA-1:five_prime_utr;Parent=Msa1072550-mRNA-1
chr7_2 CDS 69682280 69682402 69682280 ID=Msa1072550-mRNA-1:cds;Parent=Msa1072550-mRNA-1
chr7_2 CDS 69683096 69683104 69683096 ID=Msa1072550-mRNA-1:cds;Parent=Msa1072550-mRNA-1
chr7_2 CDS 69683334 69683708 69683334 ID=Msa1072550-mRNA-1:cds;Parent=Msa1072550-mRNA-1
chr7_2 three_prime_UTR 69683709 69684107 69683709 ID=Msa1072550-mRNA-1:three_prime_utr;Parent=Msa1072550-mRNA-1
Gene Sequence

>Msa1072550

ATGTCATGCTGTTTTGATTTCACATTTTCAGTTGACTCAGAGTTCTTTTTTGGACTTTCAGATTCTAAAGATGAGAAAAGGAATTCTGGAGACAGCATTTCTGGCGCTGATTCTTCCCCGTGGATTGTGTCTGTTCAAAAGCAATTACAAATGAGAATTGAAGCCCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAACTAGGTAGTACCTTGGCAGCATCGGAAACACTTCCGCTGTCCCATGATAAGCAAAACCAGCCCCTATCAGAGCCTTCTGGGTCTAGTGATGCCCTTGCAGGCACTTTTTCTCCCCATAAAAAACAGAGAATTGATGAAGGTTCAAAGGATGGCTTCACTGCATCCCAAGTTACAAGAAAGACTGCTCAGAAGAATGATTGTGATGTTGGTCCTTTGGATCCAAACTTGTATGAAGACGATGCTGGCTATGGATTTGATTTGGAAACAGAAAATGACGACGGCAATGAGAGTGAGCAGTAA
Protein sequence

>Msa1072550

MSCCFDFTFSVDSEFFFGLSDSKDEKRNSGDSISGADSSPWIVSVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETLPLSHDKQNQPLSEPSGSSDALAGTFSPHKKQRIDEGSKDGFTASQVTRKTAQKNDCDVGPLDPNLYEDDAGYGFDLETENDDGNESEQ*