AlfalfaGEDB | Msa1117880

M. sativa cultivar zhongmu-4 / Msa1117880

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117880	XP_003624829.2	89.286	280	5	3	1	256	1	279	8.88e-173	487

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117880	sp\|Q9SJW0\|PHL7_ARATH	63.571	140	27	2	48	165	15	152	7.52e-51	171

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117880	G7L3R3	89.286	280	5	3	1	256	1	279	4.24e-173	487

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TFs/TRs:

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Gene ID	Type	Classification
Msa1117880	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1072550	Msa1117880	0.803397	3.555686e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117880	MtrunA17_Chr7g0254981	89.286	280	5	3	1	256	1	279	8.16e-177	487
Msa1117880	MtrunA17_Chr2g0291021	47.980	198	61	5	1	166	1	188	1.66e-49	166
Msa1117880	MtrunA17_Chr8g0356501	47.619	147	53	5	48	170	37	183	1.61e-33	124
Msa1117880	MtrunA17_Chr5g0409731	44.755	143	48	2	48	159	25	167	4.91e-33	122
Msa1117880	MtrunA17_Chr7g0261911	45.161	155	62	3	31	162	241	395	1.87e-32	124
Msa1117880	MtrunA17_Chr1g0175091	41.667	156	58	4	31	165	249	392	5.93e-32	121
Msa1117880	MtrunA17_Chr4g0042451	45.139	144	49	3	47	160	16	159	3.81e-31	117
Msa1117880	MtrunA17_Chr2g0310011	50.388	129	40	3	48	153	35	162	7.41e-31	117
Msa1117880	MtrunA17_Chr7g0258551	40.580	138	64	2	46	165	210	347	6.65e-30	115
Msa1117880	MtrunA17_Chr7g0274471	42.336	137	54	2	48	162	218	351	1.67e-29	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117880	AT2G01060.1	63.571	140	27	2	48	165	15	152	7.64e-52	171
Msa1117880	AT4G13640.1	47.222	144	45	3	48	160	37	180	3.01e-33	122
Msa1117880	AT3G24120.1	46.528	144	46	3	48	160	41	184	3.68e-33	122
Msa1117880	AT4G13640.2	46.259	147	45	3	48	160	37	183	4.84e-33	122
Msa1117880	AT3G13040.3	41.667	156	67	1	43	174	236	391	6.33e-33	125
Msa1117880	AT3G13040.1	41.667	156	67	1	43	174	236	391	6.33e-33	125
Msa1117880	AT3G13040.2	41.667	156	67	1	43	174	236	391	6.33e-33	125
Msa1117880	AT3G24120.2	45.578	147	46	3	48	160	41	187	1.05e-32	121
Msa1117880	AT5G29000.1	42.466	146	62	1	38	161	178	323	1.47e-32	122
Msa1117880	AT5G29000.3	42.466	146	62	1	38	161	178	323	1.47e-32	122

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Find 90 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACTAAGACACCCATG+GGG	0.798673	7_3:+66333757	None:intergenic
AAAGATGAGAAAAGGAATTC+TGG	0.312253	7_3:-66333806	Msa1117880:CDS
AAATCTCAAGGCGGTGGTGG+TGG	0.477044	7_3:-66337453	Msa1117880:CDS
AAATTGAAGCATTCAGAATC+TGG	0.331873	7_3:+66337716	None:intergenic
AACTTGTATGAAGACGATGC+TGG	0.582842	7_3:-66332521	Msa1117880:CDS
AAGAATTAGTTTCTGTTTGT+AGG	0.306362	7_3:-66332445	Msa1117880:three_prime_UTR
AAGGCACCTTTACCATCACC+TGG	0.649278	7_3:+66333934	None:intergenic
AAGTACTTGCCTGAATCACC+AGG	0.571352	7_3:-66333952	Msa1117880:CDS
AAGTGTTTCCGATGCTGCCA+AGG	0.559809	7_3:+66332733	None:intergenic
AATGTTCAACCTGCTGGAGG+TGG	0.620630	7_3:-66337384	Msa1117880:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTCAAATGGAAAGTTTCT+AGG	+	chr7_3:66332663-66332682	None:intergenic	30.0%
TAGAAACTTTCCATTTGACT+TGG	-	chr7_3:66332662-66332681	Msa1117880:CDS	30.0%
ATGATGCTACATAAATCTCA+AGG	-	chr7_3:66332843-66332862	Msa1117880:intron	30.0%
AAGCTACAAAGTTTAACTGT+TGG	-	chr7_3:66333218-66333237	Msa1117880:intron	30.0%
TAGTATCATTGTAGGTATGT+CGG	+	chr7_3:66333269-66333288	None:intergenic	30.0%
CCTATGTTTAGTATCATTGT+AGG	+	chr7_3:66333277-66333296	None:intergenic	30.0%
CCTACAATGATACTAAACAT+AGG	-	chr7_3:66333274-66333293	Msa1117880:intron	30.0%
ATAGGCTAAACCTTCTAAAT+TGG	-	chr7_3:66333292-66333311	Msa1117880:intron	30.0%
TAGGCTAAACCTTCTAAATT+GGG	-	chr7_3:66333293-66333312	Msa1117880:intron	30.0%
TTGCTAGAACATGCTAAAAA+GGG	+	chr7_3:66333447-66333466	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	66332067	66338263	66332067	ID=Msa1117880;Name=Msa1117880
chr7_3	mRNA	66332067	66338263	66332067	ID=Msa1117880-mRNA-1;Parent=Msa1117880;Name=Msa1117880-mRNA-1;_AED=0.12;_eAED=0.12;_QI=242\|0.83\|1\|1\|0.5\|0.42\|7\|399\|259
chr7_3	exon	66332067	66332840	66332067	ID=Msa1117880-mRNA-1:exon:16067;Parent=Msa1117880-mRNA-1
chr7_3	exon	66333772	66333833	66333772	ID=Msa1117880-mRNA-1:exon:16066;Parent=Msa1117880-mRNA-1
chr7_3	exon	66333941	66333989	66333941	ID=Msa1117880-mRNA-1:exon:16065;Parent=Msa1117880-mRNA-1
chr7_3	exon	66334091	66334167	66334091	ID=Msa1117880-mRNA-1:exon:16064;Parent=Msa1117880-mRNA-1
chr7_3	exon	66337304	66337527	66337304	ID=Msa1117880-mRNA-1:exon:16063;Parent=Msa1117880-mRNA-1
chr7_3	exon	66337702	66337872	66337702	ID=Msa1117880-mRNA-1:exon:16062;Parent=Msa1117880-mRNA-1
chr7_3	exon	66338200	66338263	66338200	ID=Msa1117880-mRNA-1:exon:16061;Parent=Msa1117880-mRNA-1
chr7_3	five_prime_UTR	66338200	66338263	66338200	ID=Msa1117880-mRNA-1:five_prime_utr;Parent=Msa1117880-mRNA-1
chr7_3	five_prime_UTR	66337702	66337872	66337702	ID=Msa1117880-mRNA-1:five_prime_utr;Parent=Msa1117880-mRNA-1
chr7_3	five_prime_UTR	66337521	66337527	66337521	ID=Msa1117880-mRNA-1:five_prime_utr;Parent=Msa1117880-mRNA-1
chr7_3	CDS	66337304	66337520	66337304	ID=Msa1117880-mRNA-1:cds;Parent=Msa1117880-mRNA-1
chr7_3	CDS	66334091	66334167	66334091	ID=Msa1117880-mRNA-1:cds;Parent=Msa1117880-mRNA-1
chr7_3	CDS	66333941	66333989	66333941	ID=Msa1117880-mRNA-1:cds;Parent=Msa1117880-mRNA-1
chr7_3	CDS	66333772	66333833	66333772	ID=Msa1117880-mRNA-1:cds;Parent=Msa1117880-mRNA-1
chr7_3	CDS	66332466	66332840	66332466	ID=Msa1117880-mRNA-1:cds;Parent=Msa1117880-mRNA-1
chr7_3	three_prime_UTR	66332067	66332465	66332067	ID=Msa1117880-mRNA-1:three_prime_utr;Parent=Msa1117880-mRNA-1

Gene Sequence

>Msa1117880

ATGTATCATGCAAAGAAGTTTCCGGAGGAGACGATGATGCTACATAAATCTCAAGGCGGTGGTGGTGGTGAACAGTTTGCAAATGGTGGGGGTTTGAATGGATCTGCTGTGAAAAATGTTCAACCTGCTGGAGGTGGTGGGAAGCAGCGTTTGCGTTGGACGTCGGATCTTCATGACCGTTTTGTCGATGCTATTACGCAGCTTGGTGGACCAGATAGAGCAACACCGAAAGGTGTTTTGAGAGTGATGGGTGTGCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAGTATCGCCTGGCGAAGTACTTGCCTGAATCACCAGGTGATGGTAAAGATTCTAAAGATGAGAAAAGGAATTCTGGAGACAGCATTTCTGGCGCTGATTCTTCCCCATGGGTTCAAAAGCAATTACAAATGAGAATTGAAGCCCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAACTAGGTAGTACCTTGGCAGCATCGGAAACACTTCCGCTGTCCCATGATAAGCAAAACCAGCCCCTATCAGAGCCTTCTGGGTCTAGTGATGCCCTTGCAGGCACTTTTTCTCCCCATAAAAAACAGAGAATTGATGAAGGTTCAAAGGATGGCTTCACTGCATCCCAAGTTACAAGAAAGACTGCTCAGAAGAATGATTGTGATGTTGGTCCTTTGGATCCAAACTTGTATGAAGACGATGCTGGCTATGGATTTGATTTGGAAACAGAAAATGACGACGGCAATGAGAGTGAGCAGTAA

Protein sequence

>Msa1117880

MYHAKKFPEETMMLHKSQGGGGGEQFANGGGLNGSAVKNVQPAGGGGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPGDGKDSKDEKRNSGDSISGADSSPWVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETLPLSHDKQNQPLSEPSGSSDALAGTFSPHKKQRIDEGSKDGFTASQVTRKTAQKNDCDVGPLDPNLYEDDAGYGFDLETENDDGNESEQ*