Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073560 | XP_003625042.2 | 93.651 | 126 | 8 | 0 | 20 | 145 | 6 | 131 | 2.82e-78 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073560 | sp|Q9SLG8|SSL2_ARATH | 59.615 | 52 | 20 | 1 | 93 | 144 | 43 | 93 | 5.06e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073560 | A0A396H3D3 | 93.651 | 126 | 8 | 0 | 20 | 145 | 6 | 131 | 1.35e-78 | 249 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1033710 | Msa1073560 | 0.807263 | 5.505261e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073560 | MtrunA17_Chr7g0256601 | 93.651 | 126 | 8 | 0 | 20 | 145 | 6 | 131 | 2.59e-82 | 249 |
| Msa1073560 | MtrunA17_Chr7g0256591 | 84.158 | 101 | 16 | 0 | 45 | 145 | 1 | 101 | 7.39e-60 | 191 |
| Msa1073560 | MtrunA17_Chr7g0256581 | 63.636 | 44 | 16 | 0 | 99 | 142 | 50 | 93 | 1.73e-13 | 67.0 |
| Msa1073560 | MtrunA17_Chr5g0443561 | 51.667 | 60 | 28 | 1 | 83 | 142 | 30 | 88 | 2.19e-13 | 66.6 |
| Msa1073560 | MtrunA17_Chr7g0256571 | 63.636 | 44 | 16 | 0 | 99 | 142 | 50 | 93 | 3.41e-13 | 66.2 |
| Msa1073560 | MtrunA17_Chr7g0256561 | 62.791 | 43 | 16 | 0 | 100 | 142 | 55 | 97 | 1.15e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073560 | AT2G41290.1 | 59.615 | 52 | 20 | 1 | 93 | 144 | 43 | 93 | 5.14e-14 | 68.9 |
| Msa1073560 | AT3G57030.1 | 40.816 | 98 | 50 | 3 | 51 | 142 | 1 | 96 | 2.47e-13 | 67.0 |
| Msa1073560 | AT3G57010.1 | 38.889 | 108 | 57 | 3 | 43 | 150 | 3 | 101 | 9.09e-13 | 65.5 |
| Msa1073560 | AT3G57020.2 | 44.828 | 87 | 41 | 4 | 83 | 166 | 36 | 118 | 1.42e-11 | 62.0 |
| Msa1073560 | AT3G57020.1 | 47.826 | 69 | 33 | 2 | 83 | 151 | 36 | 101 | 2.81e-11 | 61.2 |
Find 50 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGATTGAAGATAGAGTTAT+AGG | 0.254119 | 7_2:-71141247 | None:intergenic |
| CCTTCGGAGTTTCCGATGTT+TGG | 0.289970 | 7_2:+71141380 | Msa1073560:CDS |
| CCATCGGAAACTCCGGTATA+AGG | 0.382665 | 7_2:-71141481 | None:intergenic |
| ACCATTCTACACCCCTTAGA+TGG | 0.399103 | 7_2:-71139867 | None:intergenic |
| CAGCACAAAACAAGAGAGTT+TGG | 0.407280 | 7_2:+71141195 | Msa1073560:CDS |
| GCCATCTAAGGGGTGTAGAA+TGG | 0.449832 | 7_2:+71139866 | Msa1073560:CDS |
| TGATGTTTCTGTGACATCCT+TGG | 0.456615 | 7_2:-71141356 | None:intergenic |
| GAATGGTTTGATGCCAGCTC+GGG | 0.479347 | 7_2:+71139883 | Msa1073560:CDS |
| TGAATACGGCGCCGTTGGAC+CGG | 0.480181 | 7_2:+71141426 | Msa1073560:CDS |
| GGATCGAAGGCGAAACTCTC+CGG | 0.482879 | 7_2:-71141445 | None:intergenic |
| CCTATAACTCTATCTTCAAT+CGG | 0.486388 | 7_2:+71141247 | Msa1073560:CDS |
| CGATTGAAGATAGAGTTATA+GGG | 0.486908 | 7_2:-71141246 | None:intergenic |
| CCGATGGACATATCATCAAA+TGG | 0.501401 | 7_2:+71141497 | Msa1073560:CDS |
| GGCATCGTCATCAGAACCGT+TGG | 0.503618 | 7_2:+71141518 | Msa1073560:CDS |
| GCACCTTACGGCGGCTGTCG+TGG | 0.513010 | 7_2:+71141285 | Msa1073560:CDS |
| AATATGATTCCGATTGAATA+CGG | 0.514073 | 7_2:+71141412 | Msa1073560:CDS |
| GCCTTCGATCCTCACGGTGA+AGG | 0.520540 | 7_2:+71141457 | Msa1073560:CDS |
| CCAACGGCGCCGTATTCAAT+CGG | 0.522160 | 7_2:-71141421 | None:intergenic |
| AGAATGGTTTGATGCCAGCT+CGG | 0.526348 | 7_2:+71139882 | Msa1073560:CDS |
| CTGCCACGACAGCCGCCGTA+AGG | 0.527552 | 7_2:-71141288 | None:intergenic |
| GTCACAGAAACATCAACCTT+CGG | 0.533655 | 7_2:+71141364 | Msa1073560:CDS |
| TCCTTCACCGTGAGGATCGA+AGG | 0.535661 | 7_2:-71141458 | None:intergenic |
| GTTTGATAAACACCCCGAGC+TGG | 0.537853 | 7_2:-71139896 | None:intergenic |
| AGATAGTGTATCAAAGAAAG+AGG | 0.541721 | 7_2:-71141587 | None:intergenic |
| GGCGAAACTCTCCGGTCCAA+CGG | 0.549607 | 7_2:-71141437 | None:intergenic |
| CACGGTGAAGGACCTTATAC+CGG | 0.553418 | 7_2:+71141469 | Msa1073560:CDS |
| GCATCGTCATCAGAACCGTT+GGG | 0.554964 | 7_2:+71141519 | Msa1073560:CDS |
| GAGGCCACAACTGCACCTTA+CGG | 0.558237 | 7_2:+71141273 | Msa1073560:CDS |
| GATATGTCCATCGGAAACTC+CGG | 0.560135 | 7_2:-71141488 | None:intergenic |
| GTTTCTGTGACATCCTTGGA+TGG | 0.573578 | 7_2:-71141352 | None:intergenic |
| CCTTATACCGGAGTTTCCGA+TGG | 0.578688 | 7_2:+71141481 | Msa1073560:CDS |
| CTCTATCTTCAATCGGCATG+AGG | 0.582373 | 7_2:+71141254 | Msa1073560:CDS |
| CCATTTGATGATATGTCCAT+CGG | 0.591038 | 7_2:-71141497 | None:intergenic |
| GCCGCCGTAAGGTGCAGTTG+TGG | 0.597374 | 7_2:-71141277 | None:intergenic |
| AGTTTGGTGCACAATATACC+TGG | 0.610242 | 7_2:+71141211 | Msa1073560:CDS |
| CCGTGGAGTTACACCATCCA+AGG | 0.614288 | 7_2:+71141339 | Msa1073560:CDS |
| CCAAACATCGGAAACTCCGA+AGG | 0.621719 | 7_2:-71141380 | None:intergenic |
| CCTTGGATGGTGTAACTCCA+CGG | 0.625278 | 7_2:-71141339 | None:intergenic |
| CCGTCACTTCTTCTCCACAC+AGG | 0.627944 | 7_2:+71141551 | Msa1073560:CDS |
| AATGGTTTGATGCCAGCTCG+GGG | 0.663546 | 7_2:+71139884 | Msa1073560:CDS |
| GCCACAACTGCACCTTACGG+CGG | 0.672386 | 7_2:+71141276 | Msa1073560:CDS |
| CCTGTGTGGAGAAGAAGTGA+CGG | 0.679020 | 7_2:-71141551 | None:intergenic |
| TCGTCATCAGAACCGTTGGG+AGG | 0.686370 | 7_2:+71141522 | Msa1073560:CDS |
| CATGAACAAAGGAATACACG+TGG | 0.686515 | 7_2:-71141617 | None:intergenic |
| AGTTTCGCCTTCGATCCTCA+CGG | 0.691537 | 7_2:+71141451 | Msa1073560:CDS |
| ATTCTCGTATTGCCAAACAT+CGG | 0.691641 | 7_2:-71141392 | None:intergenic |
| GCATGGTTAGCATACAGCCG+TGG | 0.695844 | 7_2:+71141322 | Msa1073560:CDS |
| GCTGAGAGTGTTAACCTGTG+TGG | 0.698613 | 7_2:-71141565 | None:intergenic |
| TGACGGCAAAGTCCTCCCAA+CGG | 0.704429 | 7_2:-71141534 | None:intergenic |
| GTATAAGGTCCTTCACCGTG+AGG | 0.707168 | 7_2:-71141466 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAGAATATTATTTAATTTAA+AGG | - | chr7_2:71140349-71140368 | None:intergenic | 10.0% |
| !! | AAAAAATAGAAAATTATTAG+TGG | - | chr7_2:71140465-71140484 | None:intergenic | 10.0% |
| !! | TTGTTACATATTAAATTTAT+TGG | - | chr7_2:71140506-71140525 | None:intergenic | 10.0% |
| !! | AATATAAAAATAATTGACAA+AGG | + | chr7_2:71140836-71140855 | Msa1073560:intron | 10.0% |
| !! | ATATAAAAATAATTGACAAA+GGG | + | chr7_2:71140837-71140856 | Msa1073560:intron | 10.0% |
| !!! | CTTTTTGAAAAATTAAAGAT+TGG | - | chr7_2:71140175-71140194 | None:intergenic | 15.0% |
| !! | ACTAGTTAAAGAATTATTAA+AGG | - | chr7_2:71140227-71140246 | None:intergenic | 15.0% |
| !!! | TTCTATTTTTATATTTAGAG+TGG | + | chr7_2:71140271-71140290 | Msa1073560:intron | 15.0% |
| !! | AAAAAAAATAGTATCTAAGT+TGG | - | chr7_2:71141105-71141124 | None:intergenic | 15.0% |
| !! | GTTATTAAAAGAAATACTTA+TGG | + | chr7_2:71141155-71141174 | Msa1073560:intron | 15.0% |
| !!! | CATTGATGATAGATAAATAA+CGG | - | chr7_2:71140028-71140047 | None:intergenic | 20.0% |
| !! | ACAATTAAAAGTGATACAAA+GGG | - | chr7_2:71140078-71140097 | None:intergenic | 20.0% |
| !! | ATTTCAATTAACCAAATCTA+TGG | - | chr7_2:71140111-71140130 | None:intergenic | 20.0% |
| !!! | TTAATTGAAATTTTCAAGAG+TGG | + | chr7_2:71140120-71140139 | Msa1073560:intron | 20.0% |
| !!! | TAGAGTGGTATTTTTTTTTT+TGG | + | chr7_2:71140286-71140305 | Msa1073560:intron | 20.0% |
| !!! | TTATTAGTGGATTAAAATGA+GGG | - | chr7_2:71140452-71140471 | None:intergenic | 20.0% |
| !!! | ATTATTAGTGGATTAAAATG+AGG | - | chr7_2:71140453-71140472 | None:intergenic | 20.0% |
| !! | GCAAAAAAATAGGAATTTAA+TGG | - | chr7_2:71140556-71140575 | None:intergenic | 20.0% |
| !!! | TATAGAATTTTAACTCTTCA+TGG | + | chr7_2:71140669-71140688 | Msa1073560:intron | 20.0% |
| !! | ACTAATTACTGCTATATATT+TGG | - | chr7_2:71140806-71140825 | None:intergenic | 20.0% |
| !!! | TAATAATTAATGTTTTACCC+TGG | + | chr7_2:71140957-71140976 | Msa1073560:intron | 20.0% |
| !! | AAAATATAATACTAACTTCC+AGG | - | chr7_2:71141065-71141084 | None:intergenic | 20.0% |
| ! | CAATTAAAAGTGATACAAAG+GGG | - | chr7_2:71140077-71140096 | None:intergenic | 25.0% |
| ! | CACAATTAAAAGTGATACAA+AGG | - | chr7_2:71140079-71140098 | None:intergenic | 25.0% |
| !!! | TATTAAAGGAAGTGTTTTCT+CGG | - | chr7_2:71140213-71140232 | None:intergenic | 25.0% |
| ! | AAATGTTAACCGATAACTTT+GGG | - | chr7_2:71140252-71140271 | None:intergenic | 25.0% |
| ! | AAAATGTTAACCGATAACTT+TGG | - | chr7_2:71140253-71140272 | None:intergenic | 25.0% |
| !! | TTTTTGGACAAAATATAGAG+TGG | + | chr7_2:71140302-71140321 | Msa1073560:intron | 25.0% |
| !!! | TTCTAAAACGACACTTAAAA+AGG | - | chr7_2:71140378-71140397 | None:intergenic | 25.0% |
| !! | GATTAAAATGAGGGTATAAT+AGG | - | chr7_2:71140443-71140462 | None:intergenic | 25.0% |
| !!! | CTGTCGTTTTGATATTTTAA+GGG | - | chr7_2:71140881-71140900 | None:intergenic | 25.0% |
| !!! | ACTGTCGTTTTGATATTTTA+AGG | - | chr7_2:71140882-71140901 | None:intergenic | 25.0% |
| ! | TATCAAAACGACAGTTAAAT+AGG | + | chr7_2:71140887-71140906 | Msa1073560:intron | 25.0% |
| !! | TTCTAAAAAGACACTTAGAA+AGG | + | chr7_2:71140923-71140942 | Msa1073560:intron | 25.0% |
| ! | AATATGATTCCGATTGAATA+CGG | + | chr7_2:71141412-71141431 | Msa1073560:CDS | 25.0% |
| TCAAAAATCTTGCCATCTAA+GGG | + | chr7_2:71139855-71139874 | Msa1073560:CDS | 30.0% | |
| ! | CAAAAATGCTAGCTCATTTT+GGG | - | chr7_2:71139926-71139945 | None:intergenic | 30.0% |
| TAATAGTTGTATGCCACATT+AGG | + | chr7_2:71139985-71140004 | Msa1073560:intron | 30.0% | |
| TGATGATAGATAAATAACGG+TGG | - | chr7_2:71140025-71140044 | None:intergenic | 30.0% | |
| !! | AATTTTCAAGAGTGGTACAA+AGG | + | chr7_2:71140128-71140147 | Msa1073560:intron | 30.0% |
| AAACGACACTTAAAAAGGAA+CGG | - | chr7_2:71140373-71140392 | None:intergenic | 30.0% | |
| AAAAGACACTTAGAAAGGAA+TGG | + | chr7_2:71140928-71140947 | Msa1073560:intron | 30.0% | |
| GTCAACAACAAAAAATTCCA+GGG | - | chr7_2:71140977-71140996 | None:intergenic | 30.0% | |
| ! | TTCCAGGTAAAGTATTAATC+TGG | - | chr7_2:71141049-71141068 | None:intergenic | 30.0% |
| CGATTGAAGATAGAGTTATA+GGG | - | chr7_2:71141249-71141268 | None:intergenic | 30.0% | |
| CCTATAACTCTATCTTCAAT+CGG | + | chr7_2:71141247-71141266 | Msa1073560:CDS | 30.0% | |
| AGATAGTGTATCAAAGAAAG+AGG | - | chr7_2:71141590-71141609 | None:intergenic | 30.0% | |
| ! | AACACATTTTGCATGAACAA+AGG | - | chr7_2:71141631-71141650 | None:intergenic | 30.0% |
| GTCAAAAATCTTGCCATCTA+AGG | + | chr7_2:71139854-71139873 | Msa1073560:intron | 35.0% | |
| CAAAAATCTTGCCATCTAAG+GGG | + | chr7_2:71139856-71139875 | Msa1073560:CDS | 35.0% | |
| ! | CCAAAAATGCTAGCTCATTT+TGG | - | chr7_2:71139927-71139946 | None:intergenic | 35.0% |
| ! | CCAAAATGAGCTAGCATTTT+TGG | + | chr7_2:71139924-71139943 | Msa1073560:intron | 35.0% |
| TTATGTTTAAGTGTCACACG+TGG | + | chr7_2:71139953-71139972 | Msa1073560:intron | 35.0% | |
| TATGTTTAAGTGTCACACGT+GGG | + | chr7_2:71139954-71139973 | Msa1073560:intron | 35.0% | |
| GATACACTTACAACCTAATG+TGG | - | chr7_2:71140001-71140020 | None:intergenic | 35.0% | |
| ! | ACAAAGGAGTGTACACATTA+AGG | + | chr7_2:71140144-71140163 | Msa1073560:intron | 35.0% |
| ! | CAAAGGAGTGTACACATTAA+GGG | + | chr7_2:71140145-71140164 | Msa1073560:intron | 35.0% |
| AACTAGTGTCCCAAAGTTAT+CGG | + | chr7_2:71140240-71140259 | Msa1073560:intron | 35.0% | |
| GATAAAGCGCGCAAAAAAAT+AGG | - | chr7_2:71140566-71140585 | None:intergenic | 35.0% | |
| GGTCAACAACAAAAAATTCC+AGG | - | chr7_2:71140978-71140997 | None:intergenic | 35.0% | |
| GACCAGATTAATACTTTACC+TGG | + | chr7_2:71141044-71141063 | Msa1073560:intron | 35.0% | |
| ! | ATAGGGTAGAATTTTGAACC+AGG | - | chr7_2:71141232-71141251 | None:intergenic | 35.0% |
| CCGATTGAAGATAGAGTTAT+AGG | - | chr7_2:71141250-71141269 | None:intergenic | 35.0% | |
| ATTCTCGTATTGCCAAACAT+CGG | - | chr7_2:71141395-71141414 | None:intergenic | 35.0% | |
| ! | CCATTTGATGATATGTCCAT+CGG | - | chr7_2:71141500-71141519 | None:intergenic | 35.0% |
| TTTGCGACAGAAAGAGAAAG+AGG | + | chr7_2:71139730-71139749 | Msa1073560:intron | 40.0% | |
| ACAAAAAGTCACAGAGCAAG+AGG | + | chr7_2:71139754-71139773 | Msa1073560:intron | 40.0% | |
| !! | CACTTTTAATTGTGTCGCAC+AGG | + | chr7_2:71140085-71140104 | Msa1073560:intron | 40.0% |
| AGACACTTAGAAAGGAATGG+AGG | + | chr7_2:71140931-71140950 | Msa1073560:intron | 40.0% | |
| GACACTTAGAAAGGAATGGA+GGG | + | chr7_2:71140932-71140951 | Msa1073560:intron | 40.0% | |
| !! | CTAAGTTGGTCATATGACGT+GGG | - | chr7_2:71141091-71141110 | None:intergenic | 40.0% |
| !! | TCTAAGTTGGTCATATGACG+TGG | - | chr7_2:71141092-71141111 | None:intergenic | 40.0% |
| CAGCACAAAACAAGAGAGTT+TGG | + | chr7_2:71141195-71141214 | Msa1073560:CDS | 40.0% | |
| !! | AGTTTGGTGCACAATATACC+TGG | + | chr7_2:71141211-71141230 | Msa1073560:CDS | 40.0% |
| ! | TGATGTTTCTGTGACATCCT+TGG | - | chr7_2:71141359-71141378 | None:intergenic | 40.0% |
| GTCACAGAAACATCAACCTT+CGG | + | chr7_2:71141364-71141383 | Msa1073560:CDS | 40.0% | |
| CCGATGGACATATCATCAAA+TGG | + | chr7_2:71141497-71141516 | Msa1073560:CDS | 40.0% | |
| CATGAACAAAGGAATACACG+TGG | - | chr7_2:71141620-71141639 | None:intergenic | 40.0% | |
| AAAGTCACAGAGCAAGAGGA+AGG | + | chr7_2:71139758-71139777 | Msa1073560:intron | 45.0% | |
| ACCATTCTACACCCCTTAGA+TGG | - | chr7_2:71139870-71139889 | None:intergenic | 45.0% | |
| AGAATGGTTTGATGCCAGCT+CGG | + | chr7_2:71139882-71139901 | Msa1073560:CDS | 45.0% | |
| CTCTATCTTCAATCGGCATG+AGG | + | chr7_2:71141254-71141273 | Msa1073560:CDS | 45.0% | |
| ! | TGGCAGTTTTCATGACTGCA+TGG | + | chr7_2:71141305-71141324 | Msa1073560:CDS | 45.0% |
| GTTTCTGTGACATCCTTGGA+TGG | - | chr7_2:71141355-71141374 | None:intergenic | 45.0% | |
| GATATGTCCATCGGAAACTC+CGG | - | chr7_2:71141491-71141510 | None:intergenic | 45.0% | |
| !!! | AAAAAAAAAAAGTATTAATT+TGG | - | chr7_2:71140999-71141018 | None:intergenic | 5.0% |
| !!! | AATTAATACTTTTTTTTTTT+AGG | + | chr7_2:71140999-71141018 | Msa1073560:intron | 5.0% |
| TCACAGAGCAAGAGGAAGGT+AGG | + | chr7_2:71139762-71139781 | Msa1073560:intron | 50.0% | |
| AGAGGAAGGTAGGAGAAGAG+AGG | + | chr7_2:71139772-71139791 | Msa1073560:intron | 50.0% | |
| GAGGAAGGTAGGAGAAGAGA+GGG | + | chr7_2:71139773-71139792 | Msa1073560:intron | 50.0% | |
| ! | GCCATCTAAGGGGTGTAGAA+TGG | + | chr7_2:71139866-71139885 | Msa1073560:CDS | 50.0% |
| GAATGGTTTGATGCCAGCTC+GGG | + | chr7_2:71139883-71139902 | Msa1073560:CDS | 50.0% | |
| AATGGTTTGATGCCAGCTCG+GGG | + | chr7_2:71139884-71139903 | Msa1073560:CDS | 50.0% | |
| GTTTGATAAACACCCCGAGC+TGG | - | chr7_2:71139899-71139918 | None:intergenic | 50.0% | |
| TGTCGCACAGGCCATAGATT+TGG | + | chr7_2:71140097-71140116 | Msa1073560:intron | 50.0% | |
| CCTTGGATGGTGTAACTCCA+CGG | - | chr7_2:71141342-71141361 | None:intergenic | 50.0% | |
| CCAAACATCGGAAACTCCGA+AGG | - | chr7_2:71141383-71141402 | None:intergenic | 50.0% | |
| CCTTCGGAGTTTCCGATGTT+TGG | + | chr7_2:71141380-71141399 | Msa1073560:CDS | 50.0% | |
| AGTTTCGCCTTCGATCCTCA+CGG | + | chr7_2:71141451-71141470 | Msa1073560:CDS | 50.0% | |
| GTATAAGGTCCTTCACCGTG+AGG | - | chr7_2:71141469-71141488 | None:intergenic | 50.0% | |
| CACGGTGAAGGACCTTATAC+CGG | + | chr7_2:71141469-71141488 | Msa1073560:CDS | 50.0% | |
| CCATCGGAAACTCCGGTATA+AGG | - | chr7_2:71141484-71141503 | None:intergenic | 50.0% | |
| CCTTATACCGGAGTTTCCGA+TGG | + | chr7_2:71141481-71141500 | Msa1073560:CDS | 50.0% | |
| GCATCGTCATCAGAACCGTT+GGG | + | chr7_2:71141519-71141538 | Msa1073560:CDS | 50.0% | |
| CCTGTGTGGAGAAGAAGTGA+CGG | - | chr7_2:71141554-71141573 | None:intergenic | 50.0% | |
| !! | GCTGAGAGTGTTAACCTGTG+TGG | - | chr7_2:71141568-71141587 | None:intergenic | 50.0% |
| GAGGCCACAACTGCACCTTA+CGG | + | chr7_2:71141273-71141292 | Msa1073560:CDS | 55.0% | |
| GCATGGTTAGCATACAGCCG+TGG | + | chr7_2:71141322-71141341 | Msa1073560:CDS | 55.0% | |
| CCGTGGAGTTACACCATCCA+AGG | + | chr7_2:71141339-71141358 | Msa1073560:CDS | 55.0% | |
| CCAACGGCGCCGTATTCAAT+CGG | - | chr7_2:71141424-71141443 | None:intergenic | 55.0% | |
| GGATCGAAGGCGAAACTCTC+CGG | - | chr7_2:71141448-71141467 | None:intergenic | 55.0% | |
| TCCTTCACCGTGAGGATCGA+AGG | - | chr7_2:71141461-71141480 | None:intergenic | 55.0% | |
| GGCATCGTCATCAGAACCGT+TGG | + | chr7_2:71141518-71141537 | Msa1073560:CDS | 55.0% | |
| TCGTCATCAGAACCGTTGGG+AGG | + | chr7_2:71141522-71141541 | Msa1073560:CDS | 55.0% | |
| TGACGGCAAAGTCCTCCCAA+CGG | - | chr7_2:71141537-71141556 | None:intergenic | 55.0% | |
| CCGTCACTTCTTCTCCACAC+AGG | + | chr7_2:71141551-71141570 | Msa1073560:CDS | 55.0% | |
| GCCACAACTGCACCTTACGG+CGG | + | chr7_2:71141276-71141295 | Msa1073560:CDS | 60.0% | |
| CCGATTGAATACGGCGCCGT+TGG | + | chr7_2:71141421-71141440 | Msa1073560:CDS | 60.0% | |
| TGAATACGGCGCCGTTGGAC+CGG | + | chr7_2:71141426-71141445 | Msa1073560:CDS | 60.0% | |
| GGCGAAACTCTCCGGTCCAA+CGG | - | chr7_2:71141440-71141459 | None:intergenic | 60.0% | |
| GCCTTCGATCCTCACGGTGA+AGG | + | chr7_2:71141457-71141476 | Msa1073560:CDS | 60.0% | |
| GCCGCCGTAAGGTGCAGTTG+TGG | - | chr7_2:71141280-71141299 | None:intergenic | 65.0% | |
| GCACCTTACGGCGGCTGTCG+TGG | + | chr7_2:71141285-71141304 | Msa1073560:CDS | 70.0% | |
| CTGCCACGACAGCCGCCGTA+AGG | - | chr7_2:71141291-71141310 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 71139711 | 71141657 | 71139711 | ID=Msa1073560;Name=Msa1073560 |
| chr7_2 | mRNA | 71139711 | 71141657 | 71139711 | ID=Msa1073560-mRNA-1;Parent=Msa1073560;Name=Msa1073560-mRNA-1;_AED=0.62;_eAED=0.62;_QI=0|0|0|0.33|1|1|3|0|172 |
| chr7_2 | exon | 71139711 | 71139715 | 71139711 | ID=Msa1073560-mRNA-1:exon:16112;Parent=Msa1073560-mRNA-1 |
| chr7_2 | exon | 71139855 | 71139905 | 71139855 | ID=Msa1073560-mRNA-1:exon:16113;Parent=Msa1073560-mRNA-1 |
| chr7_2 | exon | 71141195 | 71141657 | 71141195 | ID=Msa1073560-mRNA-1:exon:16114;Parent=Msa1073560-mRNA-1 |
| chr7_2 | CDS | 71139711 | 71139715 | 71139711 | ID=Msa1073560-mRNA-1:cds;Parent=Msa1073560-mRNA-1 |
| chr7_2 | CDS | 71139855 | 71139905 | 71139855 | ID=Msa1073560-mRNA-1:cds;Parent=Msa1073560-mRNA-1 |
| chr7_2 | CDS | 71141195 | 71141657 | 71141195 | ID=Msa1073560-mRNA-1:cds;Parent=Msa1073560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
