AlfalfaGEDB | Msa1033710

M. sativa cultivar zhongmu-4 / Msa1033710

KEGG: K14508|K21407
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF20067.2

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033710	QCD97013.1	49.279	832	322	20	55	882	50	785	0.0	763
Msa1033710	QCD97013.1	63.588	379	106	8	39	388	415	790	5.14e-149	472

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033710	sp\|Q9SLG8\|SSL2_ARATH	53.453	333	138	8	55	380	48	370	7.99e-116	363
Msa1033710	sp\|Q9SLG8\|SSL2_ARATH	53.025	281	121	7	600	873	94	370	6.04e-91	297
Msa1033710	sp\|Q9SLG8\|SSL2_ARATH	62.000	50	18	1	457	506	43	91	5.00e-11	69.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033710	A0A4D6M860	49.279	832	322	20	55	882	50	785	0.0	763
Msa1033710	A0A4D6M860	63.588	379	106	8	39	388	415	790	2.45e-149	472

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1033710	0.810413	1.167326e-50	-8.615850e-47
Msa0000310	Msa1033710	0.802782	4.764011e-49	-8.615850e-47
Msa0014790	Msa1033710	0.807371	5.223166e-50	-8.615850e-47
Msa0018010	Msa1033710	0.830360	3.067709e-55	-8.615850e-47
Msa0020320	Msa1033710	0.823578	1.284371e-53	-8.615850e-47
Msa0021710	Msa1033710	0.810332	1.215072e-50	-8.615850e-47
Msa0022230	Msa1033710	0.814908	1.212311e-51	-8.615850e-47
Msa0025690	Msa1033710	0.834173	3.493091e-56	-8.615850e-47
Msa0026120	Msa1033710	0.818424	1.974095e-52	-8.615850e-47
Msa0028050	Msa1033710	0.820204	7.759458e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033710	MtrunA17_Chr7g0256591	93.717	382	24	0	1	382	1	382	0.0	750
Msa1033710	MtrunA17_Chr7g0256591	93.929	280	17	0	596	875	103	382	0.0	546
Msa1033710	MtrunA17_Chr7g0256591	84.158	101	16	0	409	509	1	101	3.75e-53	191
Msa1033710	MtrunA17_Chr7g0256601	91.384	383	32	1	1	382	31	413	0.0	729
Msa1033710	MtrunA17_Chr7g0256601	93.617	282	18	0	594	875	132	413	0.0	551
Msa1033710	MtrunA17_Chr7g0256601	92.969	128	9	0	382	509	4	131	7.78e-75	252
Msa1033710	MtrunA17_Chr2g0307721	30.705	837	467	21	58	874	47	790	1.48e-104	344
Msa1033710	MtrunA17_Chr7g0256571	47.095	327	161	5	55	381	50	364	8.31e-100	318
Msa1033710	MtrunA17_Chr7g0256571	47.015	268	136	4	602	869	98	359	5.15e-79	262
Msa1033710	MtrunA17_Chr7g0256571	63.636	44	16	0	463	506	50	93	4.56e-11	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033710	AT2G41290.1	53.453	333	138	8	55	380	48	370	8.12e-117	363
Msa1033710	AT2G41290.1	53.025	281	121	7	600	873	94	370	6.14e-92	297
Msa1033710	AT2G41290.1	62.000	50	18	1	457	506	43	91	5.09e-12	69.3
Msa1033710	AT3G57030.1	44.764	382	191	8	7	381	1	369	1.47e-103	328
Msa1033710	AT3G57030.1	47.464	276	139	4	600	874	99	369	9.24e-83	273
Msa1033710	AT3G57030.1	40.816	98	50	3	415	506	1	96	2.11e-11	67.4
Msa1033710	AT5G22020.3	43.881	335	180	5	47	381	64	390	1.01e-86	284
Msa1033710	AT5G22020.3	45.833	264	140	3	611	874	130	390	1.11e-72	246
Msa1033710	AT5G22020.1	43.881	335	180	5	47	381	64	390	1.01e-86	284
Msa1033710	AT5G22020.1	45.833	264	140	3	611	874	130	390	1.11e-72	246

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Find 261 sgRNAs with CRISPR-Local

Find 989 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGTTTGTGAAAGCCAA+AGG	0.587101	7_1:-68943986	None:intergenic
AAACTGTTTGTGAAAGCCAA+AGG	0.587101	7_1:-68951055	None:intergenic
AAATATCCTTGGATAGGAAA+AGG	0.423941	7_1:+68944722	Msa1033710:CDS
AAATATCCTTGGATAGGAAA+AGG	0.423941	7_1:+68952215	Msa1033710:CDS
AACAATCTCACATTTGCAAA+TGG	0.458350	7_1:+68951981	Msa1033710:CDS
AACAATCTCACATTTGCTAA+TGG	0.358920	7_1:+68944488	Msa1033710:CDS
AACACCTAAAGCTGGAACAT+TGG	0.466304	7_1:+68944589	Msa1033710:CDS
AACACCTAAAGCTGGAACAT+TGG	0.466304	7_1:+68952082	Msa1033710:CDS
AACATAAAACAGAGTCCAAG+AGG	0.646873	7_1:+68944644	Msa1033710:CDS
AACATAAAACGGAGTCCAAG+AGG	0.625086	7_1:+68952137	Msa1033710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCAGAAATTCTTATAGGA+TGG	+	chr7_1:68940143-68940162	Msa1033710:intron	30.0%
TCATTAAAATGTATTCAGGG+AGG	+	chr7_1:68940229-68940248	Msa1033710:intron	30.0%
CATTAAAATGTATTCAGGGA+GGG	+	chr7_1:68940230-68940249	Msa1033710:intron	30.0%
ATGGTTATCCTACTAGTAAT+TGG	+	chr7_1:68940397-68940416	Msa1033710:intron	30.0%
GGAATCAAATATGTATTCGT+GGG	-	chr7_1:68940482-68940501	None:intergenic	30.0%
ACTTGAATATTGTGTGTTAC+AGG	-	chr7_1:68940522-68940541	None:intergenic	30.0%
CGATGAAATAATTCAGTTCA+AGG	+	chr7_1:68940568-68940587	Msa1033710:intron	30.0%
GTTGAACCAGATCTATAAAT+AGG	-	chr7_1:68940611-68940630	None:intergenic	30.0%
GCCTCATATGTTTAATAAAG+GGG	+	chr7_1:68941016-68941035	Msa1033710:intron	30.0%
TCCCCTTTATTAAACATATG+AGG	-	chr7_1:68941020-68941039	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	68939720	68953679	68939720	ID=Msa1033710;Name=Msa1033710
chr7_1	mRNA	68939720	68953679	68939720	ID=Msa1033710-mRNA-1;Parent=Msa1033710;Name=Msa1033710-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0.12\|0\|0.66\|0.87\|0.88\|9\|0\|975
chr7_1	exon	68939720	68940021	68939720	ID=Msa1033710-mRNA-1:exon:16185;Parent=Msa1033710-mRNA-1
chr7_1	exon	68943784	68944071	68943784	ID=Msa1033710-mRNA-1:exon:16186;Parent=Msa1033710-mRNA-1
chr7_1	exon	68944400	68944957	68944400	ID=Msa1033710-mRNA-1:exon:16187;Parent=Msa1033710-mRNA-1
chr7_1	exon	68949058	68949516	68949058	ID=Msa1033710-mRNA-1:exon:16188;Parent=Msa1033710-mRNA-1
chr7_1	exon	68950128	68950275	68950128	ID=Msa1033710-mRNA-1:exon:16189;Parent=Msa1033710-mRNA-1
chr7_1	exon	68950734	68950756	68950734	ID=Msa1033710-mRNA-1:exon:16190;Parent=Msa1033710-mRNA-1
chr7_1	exon	68950850	68951140	68950850	ID=Msa1033710-mRNA-1:exon:16191;Parent=Msa1033710-mRNA-1
chr7_1	exon	68951893	68952450	68951893	ID=Msa1033710-mRNA-1:exon:16192;Parent=Msa1033710-mRNA-1
chr7_1	exon	68953379	68953679	68953379	ID=Msa1033710-mRNA-1:exon:16193;Parent=Msa1033710-mRNA-1
chr7_1	CDS	68939720	68940021	68939720	ID=Msa1033710-mRNA-1:cds;Parent=Msa1033710-mRNA-1
chr7_1	CDS	68943784	68944071	68943784	ID=Msa1033710-mRNA-1:cds;Parent=Msa1033710-mRNA-1
chr7_1	CDS	68944400	68944957	68944400	ID=Msa1033710-mRNA-1:cds;Parent=Msa1033710-mRNA-1
chr7_1	CDS	68949058	68949516	68949058	ID=Msa1033710-mRNA-1:cds;Parent=Msa1033710-mRNA-1
chr7_1	CDS	68950128	68950275	68950128	ID=Msa1033710-mRNA-1:cds;Parent=Msa1033710-mRNA-1
chr7_1	CDS	68950734	68950756	68950734	ID=Msa1033710-mRNA-1:cds;Parent=Msa1033710-mRNA-1
chr7_1	CDS	68950850	68951140	68950850	ID=Msa1033710-mRNA-1:cds;Parent=Msa1033710-mRNA-1
chr7_1	CDS	68951893	68952450	68951893	ID=Msa1033710-mRNA-1:cds;Parent=Msa1033710-mRNA-1
chr7_1	CDS	68953379	68953679	68953379	ID=Msa1033710-mRNA-1:cds;Parent=Msa1033710-mRNA-1

Gene Sequence

>Msa1033710

ATGAGTCCACAACTGCATCTTACGGCAGCCGTCGTGGCAGTCTTCATGACTGCATGGTTAGCATACAACCATGGAGTTACACCATCCAAGGATGTCACAGAAACATCAACCTTCGGAGTTTCCGATGTTTGGCAATACGAGAGTATGGTTCCGATTGATAACGGTGCCGTTGGACCGGAGAGTTTTGCCTTCGACCCTCACGGTGAAGGACCTTATACCGGAGTTTCCGATGGACACATCATCAAATGGCACCGTCATGAGAACCGTTGGGTGGACTTTGCCGTCACTTCTTCTTCACACAGAGGTGATGATGATGTTGATGAGTGTGGAGGACCATACAAGGAGCATCCAAAAAAAGAACACATATGTGGGCGCCCACTTGGGCTGTGTTTCAACATAGCATCTGGTCAACTTTATGTTGCTGATGCATACATGGGACTAGTTGTTATTGAGCCCACTGGTGGCATTGCTAGAAAAGTCATATCACATGCAGTAGAAGATCAACCTTTGGCTTTCACAAACAGTTTGGATATTGATCAACGAACTGGAGTAGTGTACTTTACCTCCAGTAGTTCTAAATATGAGAGAAGGAATTACGTGTCTCTGATTCTAACCGGTGACAACTCAGGGAGGCTAATAAAATATGAACCAAAAAGTGAACAAGTCAATGTTCTTCTAAACAATCTCACATTTGCTAATGGAGTAGCACTTAGCAAAAATGGTAACTATATTCTAATATCAGAGGCTACAAAATGTAGAATATTAAGGTATTGGTTAGAAACACCTAAAGCTGGAACATTGGAAGTCTTTGCTAATCTACCAGGTTTTCCCGACAACATAAAACAGAGTCCAAGAGGAGGATTTTGGGTTGGAATCAACTCAAGAAGAGAAAAATTTATTCAATGGATGCTAAAATATCCTTGGATAGGAAAAGGGTTGGTTATGCTTCCTTTAGACATAACAAAAACTTATTCATATTTGGCTAAGGTGAAAGGGAGTACTGGATTGGCAATTAGGCTAAGTGAGGAGGGTGATGTGTTGGAAATTGTTGAAGATCATAGTAGTGGTAATAGAAGGTCTATTAGTGAGGTTGAGGAAAGAGATGGGGTACTGTGGGTTGGATCGGTTGATGCACCTTTTGTTATTAATAGCACAAAACAAGAGAGTTTGGTGCACAATATACCTGGTTCAAAATTCTACCCTATAACTCTATCTTCAATCGGCATGAGGCCACAACTGCACCTTACGGCGGCTGTCGTGGCAGTTTTCATGACTGCATGGTTAGCATACAGCCGTGGAGTTACACCATCCAAGGATGTCACAGAAACATCAACCTTCGGAGTTTCCGATGTTTGGCAATACGAGAATATGATTCCGATTGAATACGGCGCCGTTGGACCGGAGAGTTTCGCCTTCGATCCTCACGGTGAAGGACCTTATACCGGAGTTTCCGATGGACATATCATCAAATGGCACCGTCATCAGAACCGTTGGGAGGACTTTGCCGTCACTTCTTCTCCACACAGGTTAACACTCTCAGCCTCTTTCTTTGATACACTATCTATATGCTCCACGTGTATTCCTTTGTTCATGCAAAATGTGTTATTCTTCAAAATTTCTTTGACTCCCTCTGCTTTGACGAGCCCAGCACCTCCTCGTGTTCTGAAACTAGAGTTGGCTCCTTTAGACGGGAAACTTAGTACTTCTAAAGTTGACGCGCCAAGGAATGTTGAGAAAGAGGGATCGACAACCGAGCAAATCAAAATAATAATGGAAACAGGTGATGATGATGATGATGAAGAGTGTGGAGGACCATACAAGGAGCATCCAAAGAAAGAACACATATGTGGGCGCCCACTTGGGTTGTGCTTCAACGTAGCATCTGGCCAACTTTATGTTGCTGATGCATACATGGGACTAGTTGTTATTGAGCCCACTGGTGGCGTTCCTAGAAAAGTCATATCACATGCAGTAGAAGGTCAACCTTTGGCTTTCACAAACAGTTTGGATATTGATCAACGAACTGGAGCAGTGTACTTTACCTCCAGCAGTTCTAAATATGAGAGAAGGAATTACTTGTCTTTGATCCTAAGTGGTGACAACTCAGGGAGGCTAATAAAATATGAACCAAAAAGTGAACAAGTCAATGTTCTTCTAAACAATCTCACATTTGCAAATGGAGTAGCACTTAGCAAAAATGGTAACTATATTCTAATATCAGAGACTACAAAATGTAGAATATTAAGGTATTGGTTAGAAACACCTAAAGCTGGAACATTGGAAGTCTTTGCTAATCTACCAGGTTTTCCTGACAACATAAAACGGAGTCCAAGAGGAGGATTTTGGGTTGGAATTAACTCAAGAAGAGAAAAATTTATCGAATGGATGCTAAAATATCCTTGGATAGGAAAAGGGTTGGTTATGCTTCCTTTAGACATAACAAAAACTTATTCATATTTGGCTAAGGTGAAAGGGAGTACTGGATTGGCAATTAGGCTAAGTGAGGAGGGTGATGTGTTGGAAATTGTTGAAGATCATAGTAGTGGTAATAGAAGGTCTATTAGTGAGGTTGAGGAAAGAGATGGGGTACTGTGGGTTGGATCAGTTGATGCAGCTTTTGTTATTAATTCTCACTTCTCTCTCCACGACCATCCGTCGCCGCCACCATTGTCATCGCCCTCAAATCTCGTTATAGAAATCGTCTCACATCGTCCTCACATCAGACTCACCAAACGCCCCCCGTCCACCACCATCGTCGCAAGCCACACAAATATGAAAACTGCTGACACATGGATGATAGAGAGAATTCAGAGAGGAGAGAGGGCAGCTTTCTCACAACCATCGTCTTTGACCTTCGATCCGTTCGAATTTGAGTACGTCGTTGTCACCAATGTCACCGGAATATCCAAGGTGATGGATCGAAGTTGA

Protein sequence

>Msa1033710

MSPQLHLTAAVVAVFMTAWLAYNHGVTPSKDVTETSTFGVSDVWQYESMVPIDNGAVGPESFAFDPHGEGPYTGVSDGHIIKWHRHENRWVDFAVTSSSHRGDDDVDECGGPYKEHPKKEHICGRPLGLCFNIASGQLYVADAYMGLVVIEPTGGIARKVISHAVEDQPLAFTNSLDIDQRTGVVYFTSSSSKYERRNYVSLILTGDNSGRLIKYEPKSEQVNVLLNNLTFANGVALSKNGNYILISEATKCRILRYWLETPKAGTLEVFANLPGFPDNIKQSPRGGFWVGINSRREKFIQWMLKYPWIGKGLVMLPLDITKTYSYLAKVKGSTGLAIRLSEEGDVLEIVEDHSSGNRRSISEVEERDGVLWVGSVDAPFVINSTKQESLVHNIPGSKFYPITLSSIGMRPQLHLTAAVVAVFMTAWLAYSRGVTPSKDVTETSTFGVSDVWQYENMIPIEYGAVGPESFAFDPHGEGPYTGVSDGHIIKWHRHQNRWEDFAVTSSPHRLTLSASFFDTLSICSTCIPLFMQNVLFFKISLTPSALTSPAPPRVLKLELAPLDGKLSTSKVDAPRNVEKEGSTTEQIKIIMETGDDDDDEECGGPYKEHPKKEHICGRPLGLCFNVASGQLYVADAYMGLVVIEPTGGVPRKVISHAVEGQPLAFTNSLDIDQRTGAVYFTSSSSKYERRNYLSLILSGDNSGRLIKYEPKSEQVNVLLNNLTFANGVALSKNGNYILISETTKCRILRYWLETPKAGTLEVFANLPGFPDNIKRSPRGGFWVGINSRREKFIEWMLKYPWIGKGLVMLPLDITKTYSYLAKVKGSTGLAIRLSEEGDVLEIVEDHSSGNRRSISEVEERDGVLWVGSVDAAFVINSHFSLHDHPSPPPLSSPSNLVIEIVSHRPHIRLTKRPPSTTIVASHTNMKTADTWMIERIQRGERAAFSQPSSLTFDPFEFEYVVVTNVTGISKVMDRS*