Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073630 | XP_003625051.2 | 87.879 | 264 | 26 | 4 | 1 | 262 | 1 | 260 | 1.79e-135 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073630 | sp|Q9M1K1|ORG2_ARATH | 40.157 | 254 | 131 | 8 | 1 | 240 | 1 | 247 | 4.96e-48 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073630 | G7KRQ0 | 87.879 | 264 | 26 | 4 | 1 | 262 | 1 | 260 | 8.53e-136 | 392 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1073630 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059880 | Msa1073630 | 0.804518 | 2.078861e-49 | -8.615850e-47 |
| Msa1073630 | Msa1296870 | 0.808702 | 2.719682e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073630 | MtrunA17_Chr7g0256671 | 87.879 | 264 | 26 | 4 | 1 | 262 | 1 | 260 | 1.64e-139 | 392 |
| Msa1073630 | MtrunA17_Chr1g0170591 | 54.545 | 253 | 87 | 6 | 1 | 243 | 1 | 235 | 2.58e-77 | 234 |
| Msa1073630 | MtrunA17_Chr1g0170581 | 54.435 | 248 | 99 | 7 | 1 | 241 | 1 | 241 | 1.06e-74 | 228 |
| Msa1073630 | MtrunA17_Chr1g0170571 | 54.582 | 251 | 86 | 6 | 1 | 241 | 1 | 233 | 1.09e-71 | 219 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073630 | AT3G56970.1 | 40.157 | 254 | 131 | 8 | 1 | 240 | 1 | 247 | 5.04e-49 | 162 |
| Msa1073630 | AT3G56980.1 | 41.923 | 260 | 123 | 8 | 1 | 240 | 1 | 252 | 1.35e-42 | 146 |
| Msa1073630 | AT2G41240.1 | 41.129 | 248 | 126 | 8 | 1 | 240 | 1 | 236 | 8.48e-41 | 141 |
| Msa1073630 | AT2G41240.2 | 40.726 | 248 | 126 | 9 | 1 | 240 | 1 | 235 | 2.50e-38 | 134 |
| Msa1073630 | AT5G04150.1 | 41.176 | 170 | 97 | 2 | 63 | 231 | 83 | 250 | 3.92e-35 | 127 |
| Msa1073630 | AT5G04150.2 | 42.405 | 158 | 88 | 2 | 63 | 219 | 83 | 238 | 6.21e-34 | 123 |
Find 41 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCTTGGCCATAAGTTT+AGG | 0.279241 | 7_2:-71217825 | None:intergenic |
| CTTCTATAACTTACATTTCC+AGG | 0.285756 | 7_2:+71218722 | Msa1073630:CDS |
| AGCATTGTGGTTAAGCTTCT+TGG | 0.288890 | 7_2:-71217838 | None:intergenic |
| GCTTCTTGGCCATAAGTTTA+GGG | 0.303457 | 7_2:-71217824 | None:intergenic |
| AGCTTCTATCAAGAATTTCT+AGG | 0.307872 | 7_2:+71218478 | Msa1073630:CDS |
| TCACTTCGTTCACTTCTTCC+CGG | 0.311784 | 7_2:+71217903 | Msa1073630:CDS |
| TCTTCTTCTTCTAAAACCTT+TGG | 0.341199 | 7_2:+71218690 | Msa1073630:CDS |
| AAAATTTGTGCAATTGTTGC+CGG | 0.343449 | 7_2:-71218399 | None:intergenic |
| AAAAGAAGGATTGTAGCAAT+TGG | 0.345558 | 7_2:-71218541 | None:intergenic |
| GGGATGGCTCTTAGAGGAAT+TGG | 0.370058 | 7_2:+71217686 | Msa1073630:CDS |
| GCCACCATCCCCTAAACTTA+TGG | 0.372270 | 7_2:+71217815 | Msa1073630:CDS |
| AAACATGGGATGGCTCTTAG+AGG | 0.417509 | 7_2:+71217680 | Msa1073630:CDS |
| CTTGTTGAAACTTCAAAAGA+AGG | 0.422266 | 7_2:-71218555 | None:intergenic |
| AGTAATCATCATTTAGTGTT+GGG | 0.430158 | 7_2:+71219207 | Msa1073630:CDS |
| CTCAGATAGTGGAATCTTGT+AGG | 0.433861 | 7_2:-71218625 | None:intergenic |
| TTGTTGTGTTTAGAAAATAA+TGG | 0.445118 | 7_2:+71218651 | Msa1073630:CDS |
| AAAGAAGGATTGTAGCAATT+GGG | 0.453551 | 7_2:-71218540 | None:intergenic |
| CACAACAAGATCTCAGATAG+TGG | 0.468877 | 7_2:-71218636 | None:intergenic |
| TGTTACCGTTTGATCTTCAC+CGG | 0.480755 | 7_2:-71217922 | None:intergenic |
| TCTTCTTCTAAAACCTTTGG+AGG | 0.482465 | 7_2:+71218693 | Msa1073630:CDS |
| AGGAAAATGTTGAGATTGAA+AGG | 0.497563 | 7_2:+71217793 | Msa1073630:CDS |
| TTGGCCATAAGTTTAGGGGA+TGG | 0.512241 | 7_2:-71217819 | None:intergenic |
| AAGTAATCATCATTTAGTGT+TGG | 0.537108 | 7_2:+71219206 | Msa1073630:CDS |
| GCCATAAGTTTAGGGGATGG+TGG | 0.542896 | 7_2:-71217816 | None:intergenic |
| CTTCTAAAACCTTTGGAGGG+AGG | 0.546758 | 7_2:+71218697 | Msa1073630:CDS |
| CTTCTTCTAAAACCTTTGGA+GGG | 0.566421 | 7_2:+71218694 | Msa1073630:CDS |
| TCTTCCCGGTGAAGATCAAA+CGG | 0.568161 | 7_2:+71217917 | Msa1073630:CDS |
| ATAGAAGAGCCTCCCTCCAA+AGG | 0.569392 | 7_2:-71218706 | None:intergenic |
| GGTGAAGAGAATTGATGATA+CGG | 0.572582 | 7_2:-71217768 | None:intergenic |
| CTTCTTGGCCATAAGTTTAG+GGG | 0.575873 | 7_2:-71217823 | None:intergenic |
| CAGTTCTCATACTCAAACAT+GGG | 0.581426 | 7_2:+71217666 | Msa1073630:CDS |
| AAATTTGTGCAATTGTTGCC+GGG | 0.583306 | 7_2:-71218398 | None:intergenic |
| TCAGTTCTCATACTCAAACA+TGG | 0.591812 | 7_2:+71217665 | Msa1073630:CDS |
| TCTCATACTCAAACATGGGA+TGG | 0.596383 | 7_2:+71217670 | Msa1073630:CDS |
| TCATCAATTCTCTTCACCAA+AGG | 0.601000 | 7_2:+71217773 | Msa1073630:CDS |
| TTTGAGTATGAGAACTGAGG+TGG | 0.664685 | 7_2:-71217660 | None:intergenic |
| GATCACGTTCACTAGCATTG+TGG | 0.681797 | 7_2:-71217851 | None:intergenic |
| AAGTGAACAAAGAATCACAA+AGG | 0.685248 | 7_2:+71218511 | Msa1073630:CDS |
| GTTACCGTTTGATCTTCACC+GGG | 0.699387 | 7_2:-71217921 | None:intergenic |
| TTGAGTATGAGAACTGAGGT+GGG | 0.727246 | 7_2:-71217659 | None:intergenic |
| ATGTTTGAGTATGAGAACTG+AGG | 0.776306 | 7_2:-71217663 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAATAAATTAATTA+GGG | - | chr7_2:71218874-71218893 | None:intergenic | 0.0% |
| !! | TAAAATAAATAAATTAATTA+GGG | - | chr7_2:71218874-71218893 | None:intergenic | 0.0% |
| !! | TGAATATAAACTTATATTTA+AGG | - | chr7_2:71218812-71218831 | None:intergenic | 10.0% |
| !! | TGAATATAAACTTATATTTA+AGG | - | chr7_2:71218812-71218831 | None:intergenic | 10.0% |
| !! | ATTAATTAAAGAAAATTGGA+AGG | - | chr7_2:71217960-71217979 | None:intergenic | 15.0% |
| !!! | ACAAATTTTAAAATACATAC+CGG | + | chr7_2:71218413-71218432 | Msa1073630:CDS | 15.0% |
| !! | CAACTAAAACATTAATTATT+AGG | + | chr7_2:71218905-71218924 | Msa1073630:intron | 15.0% |
| !!! | CATTAATTATTAGGAAATTT+TGG | + | chr7_2:71218914-71218933 | Msa1073630:intron | 15.0% |
| !!! | GTGTGTTATATTTTTTTTTT+TGG | - | chr7_2:71218971-71218990 | None:intergenic | 15.0% |
| !! | ATTAATTAAAGAAAATTGGA+AGG | - | chr7_2:71217960-71217979 | None:intergenic | 15.0% |
| !!! | ACAAATTTTAAAATACATAC+CGG | + | chr7_2:71218413-71218432 | Msa1073630:CDS | 15.0% |
| !! | CAACTAAAACATTAATTATT+AGG | + | chr7_2:71218905-71218924 | Msa1073630:intron | 15.0% |
| !!! | CATTAATTATTAGGAAATTT+TGG | + | chr7_2:71218914-71218933 | Msa1073630:intron | 15.0% |
| !!! | GTGTGTTATATTTTTTTTTT+TGG | - | chr7_2:71218971-71218990 | None:intergenic | 15.0% |
| !!! | TTTCTCTTTTTGACTAATTA+AGG | - | chr7_2:71217721-71217740 | None:intergenic | 20.0% |
| !! | TAAAAACAAAAGTTAGAAAC+CGG | - | chr7_2:71218176-71218195 | None:intergenic | 20.0% |
| !!! | TTTTTTCTGCAATATTAACA+TGG | - | chr7_2:71218370-71218389 | None:intergenic | 20.0% |
| !! | TTGTTGTGTTTAGAAAATAA+TGG | + | chr7_2:71218651-71218670 | Msa1073630:CDS | 20.0% |
| !!! | TTTCTCTTTTTGACTAATTA+AGG | - | chr7_2:71217721-71217740 | None:intergenic | 20.0% |
| !! | TAAAAACAAAAGTTAGAAAC+CGG | - | chr7_2:71218176-71218195 | None:intergenic | 20.0% |
| !!! | TTTTTTCTGCAATATTAACA+TGG | - | chr7_2:71218370-71218389 | None:intergenic | 20.0% |
| !! | TTGTTGTGTTTAGAAAATAA+TGG | + | chr7_2:71218651-71218670 | Msa1073630:CDS | 20.0% |
| !! | CTATTTGTTTCGTAATGTTT+TGG | + | chr7_2:71218196-71218215 | Msa1073630:intron | 25.0% |
| !! | ATCTGTCGCTTATTATATTA+TGG | - | chr7_2:71219059-71219078 | None:intergenic | 25.0% |
| ! | AAGTAATCATCATTTAGTGT+TGG | + | chr7_2:71219206-71219225 | Msa1073630:CDS | 25.0% |
| ! | AGTAATCATCATTTAGTGTT+GGG | + | chr7_2:71219207-71219226 | Msa1073630:CDS | 25.0% |
| !! | CTATTTGTTTCGTAATGTTT+TGG | + | chr7_2:71218196-71218215 | Msa1073630:intron | 25.0% |
| !! | ATCTGTCGCTTATTATATTA+TGG | - | chr7_2:71219059-71219078 | None:intergenic | 25.0% |
| ! | AAGTAATCATCATTTAGTGT+TGG | + | chr7_2:71219206-71219225 | Msa1073630:CDS | 25.0% |
| ! | AGTAATCATCATTTAGTGTT+GGG | + | chr7_2:71219207-71219226 | Msa1073630:CDS | 25.0% |
| ! | TCAATCTCAACATTTTCCTT+TGG | - | chr7_2:71217792-71217811 | None:intergenic | 30.0% |
| AGGAAAATGTTGAGATTGAA+AGG | + | chr7_2:71217793-71217812 | Msa1073630:CDS | 30.0% | |
| ! | GGAATAAAAGTTCAAGGTTT+TGG | - | chr7_2:71218054-71218073 | None:intergenic | 30.0% |
| AGGTAAGGAATAAAAGTTCA+AGG | - | chr7_2:71218060-71218079 | None:intergenic | 30.0% | |
| ACCTATGATCAATTGATTAC+CGG | + | chr7_2:71218154-71218173 | Msa1073630:intron | 30.0% | |
| TGACGTCTTCATAATATGAA+TGG | + | chr7_2:71218273-71218292 | Msa1073630:intron | 30.0% | |
| AAAATTTGTGCAATTGTTGC+CGG | - | chr7_2:71218402-71218421 | None:intergenic | 30.0% | |
| !!! | TCTACCTGTTTTTGTAATTC+CGG | - | chr7_2:71218435-71218454 | None:intergenic | 30.0% |
| GAATTACAAAAACAGGTAGA+AGG | + | chr7_2:71218435-71218454 | Msa1073630:CDS | 30.0% | |
| AGCTTCTATCAAGAATTTCT+AGG | + | chr7_2:71218478-71218497 | Msa1073630:CDS | 30.0% | |
| AAGTGAACAAAGAATCACAA+AGG | + | chr7_2:71218511-71218530 | Msa1073630:CDS | 30.0% | |
| AAAGAAGGATTGTAGCAATT+GGG | - | chr7_2:71218543-71218562 | None:intergenic | 30.0% | |
| AAAAGAAGGATTGTAGCAAT+TGG | - | chr7_2:71218544-71218563 | None:intergenic | 30.0% | |
| CTTGTTGAAACTTCAAAAGA+AGG | - | chr7_2:71218558-71218577 | None:intergenic | 30.0% | |
| !!! | CTTTTGAAGTTTCAACAAGT+AGG | + | chr7_2:71218559-71218578 | Msa1073630:CDS | 30.0% |
| !! | TCTTCTTCTTCTAAAACCTT+TGG | + | chr7_2:71218690-71218709 | Msa1073630:CDS | 30.0% |
| CTTCTATAACTTACATTTCC+AGG | + | chr7_2:71218722-71218741 | Msa1073630:CDS | 30.0% | |
| ! | TCAATCTCAACATTTTCCTT+TGG | - | chr7_2:71217792-71217811 | None:intergenic | 30.0% |
| AGGAAAATGTTGAGATTGAA+AGG | + | chr7_2:71217793-71217812 | Msa1073630:CDS | 30.0% | |
| ! | GGAATAAAAGTTCAAGGTTT+TGG | - | chr7_2:71218054-71218073 | None:intergenic | 30.0% |
| AGGTAAGGAATAAAAGTTCA+AGG | - | chr7_2:71218060-71218079 | None:intergenic | 30.0% | |
| ACCTATGATCAATTGATTAC+CGG | + | chr7_2:71218154-71218173 | Msa1073630:intron | 30.0% | |
| TGACGTCTTCATAATATGAA+TGG | + | chr7_2:71218273-71218292 | Msa1073630:intron | 30.0% | |
| AAAATTTGTGCAATTGTTGC+CGG | - | chr7_2:71218402-71218421 | None:intergenic | 30.0% | |
| !!! | TCTACCTGTTTTTGTAATTC+CGG | - | chr7_2:71218435-71218454 | None:intergenic | 30.0% |
| GAATTACAAAAACAGGTAGA+AGG | + | chr7_2:71218435-71218454 | Msa1073630:CDS | 30.0% | |
| AGCTTCTATCAAGAATTTCT+AGG | + | chr7_2:71218478-71218497 | Msa1073630:CDS | 30.0% | |
| AAGTGAACAAAGAATCACAA+AGG | + | chr7_2:71218511-71218530 | Msa1073630:CDS | 30.0% | |
| AAAGAAGGATTGTAGCAATT+GGG | - | chr7_2:71218543-71218562 | None:intergenic | 30.0% | |
| AAAAGAAGGATTGTAGCAAT+TGG | - | chr7_2:71218544-71218563 | None:intergenic | 30.0% | |
| CTTGTTGAAACTTCAAAAGA+AGG | - | chr7_2:71218558-71218577 | None:intergenic | 30.0% | |
| !!! | CTTTTGAAGTTTCAACAAGT+AGG | + | chr7_2:71218559-71218578 | Msa1073630:CDS | 30.0% |
| !! | TCTTCTTCTTCTAAAACCTT+TGG | + | chr7_2:71218690-71218709 | Msa1073630:CDS | 30.0% |
| CTTCTATAACTTACATTTCC+AGG | + | chr7_2:71218722-71218741 | Msa1073630:CDS | 30.0% | |
| ATGTTTGAGTATGAGAACTG+AGG | - | chr7_2:71217666-71217685 | None:intergenic | 35.0% | |
| TCAGTTCTCATACTCAAACA+TGG | + | chr7_2:71217665-71217684 | Msa1073630:CDS | 35.0% | |
| CAGTTCTCATACTCAAACAT+GGG | + | chr7_2:71217666-71217685 | Msa1073630:CDS | 35.0% | |
| ! | GGTGAAGAGAATTGATGATA+CGG | - | chr7_2:71217771-71217790 | None:intergenic | 35.0% |
| TCATCAATTCTCTTCACCAA+AGG | + | chr7_2:71217773-71217792 | Msa1073630:CDS | 35.0% | |
| !! | TCAAGGTTTTGGTACAAACT+CGG | - | chr7_2:71218043-71218062 | None:intergenic | 35.0% |
| ACCGGTAATCAATTGATCAT+AGG | - | chr7_2:71218158-71218177 | None:intergenic | 35.0% | |
| AAATTTGTGCAATTGTTGCC+GGG | - | chr7_2:71218401-71218420 | None:intergenic | 35.0% | |
| CATACCGGAATTACAAAAAC+AGG | + | chr7_2:71218428-71218447 | Msa1073630:CDS | 35.0% | |
| !! | TCTTCTTCTAAAACCTTTGG+AGG | + | chr7_2:71218693-71218712 | Msa1073630:CDS | 35.0% |
| !! | CTTCTTCTAAAACCTTTGGA+GGG | + | chr7_2:71218694-71218713 | Msa1073630:CDS | 35.0% |
| GTAGTATTACAAAACGTACC+TGG | - | chr7_2:71218743-71218762 | None:intergenic | 35.0% | |
| ATAATTGCAACGTTTGCAGA+TGG | + | chr7_2:71219116-71219135 | Msa1073630:intron | 35.0% | |
| ATGTTTGAGTATGAGAACTG+AGG | - | chr7_2:71217666-71217685 | None:intergenic | 35.0% | |
| TCAGTTCTCATACTCAAACA+TGG | + | chr7_2:71217665-71217684 | Msa1073630:CDS | 35.0% | |
| CAGTTCTCATACTCAAACAT+GGG | + | chr7_2:71217666-71217685 | Msa1073630:CDS | 35.0% | |
| ! | GGTGAAGAGAATTGATGATA+CGG | - | chr7_2:71217771-71217790 | None:intergenic | 35.0% |
| TCATCAATTCTCTTCACCAA+AGG | + | chr7_2:71217773-71217792 | Msa1073630:CDS | 35.0% | |
| !! | TCAAGGTTTTGGTACAAACT+CGG | - | chr7_2:71218043-71218062 | None:intergenic | 35.0% |
| ACCGGTAATCAATTGATCAT+AGG | - | chr7_2:71218158-71218177 | None:intergenic | 35.0% | |
| AAATTTGTGCAATTGTTGCC+GGG | - | chr7_2:71218401-71218420 | None:intergenic | 35.0% | |
| CATACCGGAATTACAAAAAC+AGG | + | chr7_2:71218428-71218447 | Msa1073630:CDS | 35.0% | |
| !! | TCTTCTTCTAAAACCTTTGG+AGG | + | chr7_2:71218693-71218712 | Msa1073630:CDS | 35.0% |
| !! | CTTCTTCTAAAACCTTTGGA+GGG | + | chr7_2:71218694-71218713 | Msa1073630:CDS | 35.0% |
| GTAGTATTACAAAACGTACC+TGG | - | chr7_2:71218743-71218762 | None:intergenic | 35.0% | |
| ATAATTGCAACGTTTGCAGA+TGG | + | chr7_2:71219116-71219135 | Msa1073630:intron | 35.0% | |
| TTGAGTATGAGAACTGAGGT+GGG | - | chr7_2:71217662-71217681 | None:intergenic | 40.0% | |
| TTTGAGTATGAGAACTGAGG+TGG | - | chr7_2:71217663-71217682 | None:intergenic | 40.0% | |
| TCTCATACTCAAACATGGGA+TGG | + | chr7_2:71217670-71217689 | Msa1073630:CDS | 40.0% | |
| CTTCTTGGCCATAAGTTTAG+GGG | - | chr7_2:71217826-71217845 | None:intergenic | 40.0% | |
| GCTTCTTGGCCATAAGTTTA+GGG | - | chr7_2:71217827-71217846 | None:intergenic | 40.0% | |
| AGCTTCTTGGCCATAAGTTT+AGG | - | chr7_2:71217828-71217847 | None:intergenic | 40.0% | |
| AGCATTGTGGTTAAGCTTCT+TGG | - | chr7_2:71217841-71217860 | None:intergenic | 40.0% | |
| TGTTACCGTTTGATCTTCAC+CGG | - | chr7_2:71217925-71217944 | None:intergenic | 40.0% | |
| ACATGAACAAGTGACTCAAC+TGG | - | chr7_2:71218087-71218106 | None:intergenic | 40.0% | |
| GCAGAAAAAAATGAGCATCC+CGG | + | chr7_2:71218380-71218399 | Msa1073630:intron | 40.0% | |
| !! | CTCAGATAGTGGAATCTTGT+AGG | - | chr7_2:71218628-71218647 | None:intergenic | 40.0% |
| CACAACAAGATCTCAGATAG+TGG | - | chr7_2:71218639-71218658 | None:intergenic | 40.0% | |
| TTGAGTATGAGAACTGAGGT+GGG | - | chr7_2:71217662-71217681 | None:intergenic | 40.0% | |
| TTTGAGTATGAGAACTGAGG+TGG | - | chr7_2:71217663-71217682 | None:intergenic | 40.0% | |
| TCTCATACTCAAACATGGGA+TGG | + | chr7_2:71217670-71217689 | Msa1073630:CDS | 40.0% | |
| CTTCTTGGCCATAAGTTTAG+GGG | - | chr7_2:71217826-71217845 | None:intergenic | 40.0% | |
| GCTTCTTGGCCATAAGTTTA+GGG | - | chr7_2:71217827-71217846 | None:intergenic | 40.0% | |
| AGCTTCTTGGCCATAAGTTT+AGG | - | chr7_2:71217828-71217847 | None:intergenic | 40.0% | |
| AGCATTGTGGTTAAGCTTCT+TGG | - | chr7_2:71217841-71217860 | None:intergenic | 40.0% | |
| TGTTACCGTTTGATCTTCAC+CGG | - | chr7_2:71217925-71217944 | None:intergenic | 40.0% | |
| ACATGAACAAGTGACTCAAC+TGG | - | chr7_2:71218087-71218106 | None:intergenic | 40.0% | |
| GCAGAAAAAAATGAGCATCC+CGG | + | chr7_2:71218380-71218399 | Msa1073630:intron | 40.0% | |
| !! | CTCAGATAGTGGAATCTTGT+AGG | - | chr7_2:71218628-71218647 | None:intergenic | 40.0% |
| CACAACAAGATCTCAGATAG+TGG | - | chr7_2:71218639-71218658 | None:intergenic | 40.0% | |
| AAACATGGGATGGCTCTTAG+AGG | + | chr7_2:71217680-71217699 | Msa1073630:CDS | 45.0% | |
| TTGGCCATAAGTTTAGGGGA+TGG | - | chr7_2:71217822-71217841 | None:intergenic | 45.0% | |
| GATCACGTTCACTAGCATTG+TGG | - | chr7_2:71217854-71217873 | None:intergenic | 45.0% | |
| TCACTTCGTTCACTTCTTCC+CGG | + | chr7_2:71217903-71217922 | Msa1073630:CDS | 45.0% | |
| TCTTCCCGGTGAAGATCAAA+CGG | + | chr7_2:71217917-71217936 | Msa1073630:CDS | 45.0% | |
| GTTACCGTTTGATCTTCACC+GGG | - | chr7_2:71217924-71217943 | None:intergenic | 45.0% | |
| !! | GACTCAACTGGTTTGAGGTA+AGG | - | chr7_2:71218075-71218094 | None:intergenic | 45.0% |
| !! | CAAGTGACTCAACTGGTTTG+AGG | - | chr7_2:71218080-71218099 | None:intergenic | 45.0% |
| !! | CTTCTAAAACCTTTGGAGGG+AGG | + | chr7_2:71218697-71218716 | Msa1073630:CDS | 45.0% |
| AAACATGGGATGGCTCTTAG+AGG | + | chr7_2:71217680-71217699 | Msa1073630:CDS | 45.0% | |
| TTGGCCATAAGTTTAGGGGA+TGG | - | chr7_2:71217822-71217841 | None:intergenic | 45.0% | |
| GATCACGTTCACTAGCATTG+TGG | - | chr7_2:71217854-71217873 | None:intergenic | 45.0% | |
| TCACTTCGTTCACTTCTTCC+CGG | + | chr7_2:71217903-71217922 | Msa1073630:CDS | 45.0% | |
| TCTTCCCGGTGAAGATCAAA+CGG | + | chr7_2:71217917-71217936 | Msa1073630:CDS | 45.0% | |
| GTTACCGTTTGATCTTCACC+GGG | - | chr7_2:71217924-71217943 | None:intergenic | 45.0% | |
| !! | GACTCAACTGGTTTGAGGTA+AGG | - | chr7_2:71218075-71218094 | None:intergenic | 45.0% |
| !! | CAAGTGACTCAACTGGTTTG+AGG | - | chr7_2:71218080-71218099 | None:intergenic | 45.0% |
| !! | CTTCTAAAACCTTTGGAGGG+AGG | + | chr7_2:71218697-71218716 | Msa1073630:CDS | 45.0% |
| !! | TTATATTAATTAAAGAAAAT+TGG | - | chr7_2:71217964-71217983 | None:intergenic | 5.0% |
| !! | CTAAAATAAATAAATTAATT+AGG | - | chr7_2:71218875-71218894 | None:intergenic | 5.0% |
| !! | TTATATTAATTAAAGAAAAT+TGG | - | chr7_2:71217964-71217983 | None:intergenic | 5.0% |
| !! | CTAAAATAAATAAATTAATT+AGG | - | chr7_2:71218875-71218894 | None:intergenic | 5.0% |
| GGGATGGCTCTTAGAGGAAT+TGG | + | chr7_2:71217686-71217705 | Msa1073630:CDS | 50.0% | |
| GCCACCATCCCCTAAACTTA+TGG | + | chr7_2:71217815-71217834 | Msa1073630:CDS | 50.0% | |
| GCCATAAGTTTAGGGGATGG+TGG | - | chr7_2:71217819-71217838 | None:intergenic | 50.0% | |
| ATAGAAGAGCCTCCCTCCAA+AGG | - | chr7_2:71218709-71218728 | None:intergenic | 50.0% | |
| GGGATGGCTCTTAGAGGAAT+TGG | + | chr7_2:71217686-71217705 | Msa1073630:CDS | 50.0% | |
| GCCACCATCCCCTAAACTTA+TGG | + | chr7_2:71217815-71217834 | Msa1073630:CDS | 50.0% | |
| GCCATAAGTTTAGGGGATGG+TGG | - | chr7_2:71217819-71217838 | None:intergenic | 50.0% | |
| ATAGAAGAGCCTCCCTCCAA+AGG | - | chr7_2:71218709-71218728 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 71217645 | 71219269 | 71217645 | ID=Msa1073630;Name=Msa1073630 |
| chr7_2 | mRNA | 71217645 | 71219269 | 71217645 | ID=Msa1073630-mRNA-1;Parent=Msa1073630;Name=Msa1073630-mRNA-1;_AED=0.26;_eAED=0.27;_QI=0|0|0|1|1|1|3|0|262 |
| chr7_2 | exon | 71217645 | 71217938 | 71217645 | ID=Msa1073630-mRNA-1:exon:16128;Parent=Msa1073630-mRNA-1 |
| chr7_2 | exon | 71218384 | 71218743 | 71218384 | ID=Msa1073630-mRNA-1:exon:16129;Parent=Msa1073630-mRNA-1 |
| chr7_2 | exon | 71219135 | 71219269 | 71219135 | ID=Msa1073630-mRNA-1:exon:16130;Parent=Msa1073630-mRNA-1 |
| chr7_2 | CDS | 71217645 | 71217938 | 71217645 | ID=Msa1073630-mRNA-1:cds;Parent=Msa1073630-mRNA-1 |
| chr7_2 | CDS | 71218384 | 71218743 | 71218384 | ID=Msa1073630-mRNA-1:cds;Parent=Msa1073630-mRNA-1 |
| chr7_2 | CDS | 71219135 | 71219269 | 71219135 | ID=Msa1073630-mRNA-1:cds;Parent=Msa1073630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
