AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0059880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0059880 MtrunA17_Chr1g0159221 95.349 215 10 0 1 215 9 223 4.19e-151 418
Msa0059880 MtrunA17_Chr1g0159211 89.815 216 21 1 1 215 8 223 5.38e-140 390
Msa0059880 MtrunA17_Chr3g0126121 67.593 216 69 1 1 215 7 222 2.27e-106 305
Msa0059880 MtrunA17_Chr1g0187451 34.574 188 119 1 28 215 19 202 5.63e-40 135
Msa0059880 MtrunA17_Chr1g0166501 34.043 188 120 1 28 215 19 202 1.68e-37 129
Msa0059880 MtrunA17_Chr1g0187431 30.065 153 90 1 55 207 1 136 3.14e-19 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0059880 AT1G21360.1 50.235 213 105 1 2 214 11 222 3.58e-73 221
Msa0059880 AT3G21260.3 51.376 218 101 1 2 214 15 232 4.68e-66 203
Msa0059880 AT1G21360.3 53.846 156 71 1 2 157 11 165 1.45e-54 173
Msa0059880 AT1G21360.2 50.000 160 80 0 55 214 1 160 7.94e-53 167
Msa0059880 AT3G21260.2 53.061 147 69 0 68 214 2 148 1.42e-44 146
Msa0059880 AT3G21260.1 52.448 143 68 0 72 214 1 143 6.23e-43 142
Msa0059880 AT2G33470.2 35.165 182 114 1 34 215 25 202 9.26e-38 130
Msa0059880 AT2G33470.1 35.165 182 114 1 34 215 25 202 9.26e-38 130

Find 38 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTAGAAATATTGAAAA+TGG 0.207243 1_2:-17376724 Msa0059880:CDS
TCCAACAACGAATCTAAATT+TGG 0.270826 1_2:-17376742 Msa0059880:CDS
TAAGCAGAAAATGCAGATAT+TGG 0.283442 1_2:-17374528 Msa0059880:CDS
CAATGATCCTGAAAAGAAAA+TGG 0.314820 1_2:-17375149 Msa0059880:CDS
TGTCATTGAAGAACTTTCTA+TGG 0.318700 1_2:-17377900 Msa0059880:CDS
TATTCAGTTCTGCATGTTCT+TGG 0.321499 1_2:-17377803 Msa0059880:intron
GGTCTTCATCTTCAGTCTTA+AGG 0.359906 1_2:+17374561 None:intergenic
ACCAAATTTAGATTCGTTGT+TGG 0.393140 1_2:+17376741 None:intergenic
TGGGGATGTGAGCAGCTTCA+TGG 0.400980 1_2:+17377849 None:intergenic
GCTGCAGTAAGGCCTTTGTT+TGG 0.415497 1_2:-17376668 Msa0059880:CDS
GGATTTCATCAACTGCTGTC+AGG 0.429044 1_2:-17375075 Msa0059880:CDS
TGTCTCAAAACAGCCATTGT+TGG 0.436087 1_2:+17377672 None:intergenic
CATTAAAACCGTGGCATGGA+TGG 0.458818 1_2:-17375096 Msa0059880:CDS
AACGGAAGGCATTGCAAAGA+AGG 0.467244 1_2:-17376697 Msa0059880:CDS
GGAGCTATTATGCAGGACCT+TGG 0.493446 1_2:-17375203 Msa0059880:intron
CAGTGAATATCTTCAAGAAA+AGG 0.501677 1_2:+17374491 None:intergenic
TGAAAAGAAAATGGAGAAAG+TGG 0.505804 1_2:-17375140 Msa0059880:CDS
ATAGAGAGAAAAGGCTTGGT+GGG 0.506837 1_2:+17377830 None:intergenic
GGATAGTATTTGTAATAATG+AGG 0.508394 1_2:+17375171 None:intergenic
AGGCCTTTGTTTGGCTCACA+AGG 0.523024 1_2:-17376659 Msa0059880:intron
TTTGCAGAGACTATTTAACT+TGG 0.533032 1_2:-17374299 Msa0059880:intron
GAATAACATATAGAGAGAAA+AGG 0.539202 1_2:+17377821 None:intergenic
ACATATAGAGAGAAAAGGCT+TGG 0.544110 1_2:+17377826 None:intergenic
GAAGGGGTCTAGCTGCAGTA+AGG 0.554936 1_2:-17376679 Msa0059880:CDS
AATATTGAAAATGGAAGCAA+CGG 0.559253 1_2:-17376715 Msa0059880:CDS
TATAGAGAGAAAAGGCTTGG+TGG 0.564749 1_2:+17377829 None:intergenic
GATTTCATCAACTGCTGTCA+GGG 0.567407 1_2:-17375074 Msa0059880:intron
ACGGAAGGCATTGCAAAGAA+GGG 0.573082 1_2:-17376696 Msa0059880:CDS
AGATGTGTATCAAAATATCA+AGG 0.576462 1_2:-17377649 Msa0059880:intron
TTGAAAATGGAAGCAACGGA+AGG 0.595410 1_2:-17376711 Msa0059880:CDS
TAATGAGGAGGTAAAATCCA+AGG 0.597945 1_2:+17375186 None:intergenic
GATGAAATCCATCCATGCCA+CGG 0.603497 1_2:+17375088 None:intergenic
GCTACATTAAAACCGTGGCA+TGG 0.611773 1_2:-17375100 Msa0059880:CDS
CGGAAGGCATTGCAAAGAAG+GGG 0.639295 1_2:-17376695 Msa0059880:CDS
TCACCTTGTGAGCCAAACAA+AGG 0.647841 1_2:+17376656 None:intergenic
TAGTATTTGTAATAATGAGG+AGG 0.660461 1_2:+17375174 None:intergenic
TAGAGAGAAAAGGCTTGGTG+GGG 0.682249 1_2:+17377831 None:intergenic
ATGAAGCTACATTAAAACCG+TGG 0.696283 1_2:-17375105 Msa0059880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATAATA+AGG - chr1_2:17375846-17375865 Msa0059880:intron 0.0%
!! AATAATAATAATAATAATAA+GGG - chr1_2:17375847-17375866 Msa0059880:intron 0.0%
!! TATTATTATTATTATTATTA+GGG + chr1_2:17375846-17375865 None:intergenic 0.0%
!! TTATTATTATTATTATTATT+AGG + chr1_2:17375847-17375866 None:intergenic 0.0%
!!! TTATTTTTTTTTTTTTTTAT+AGG + chr1_2:17377860-17377879 None:intergenic 0.0%
!!! TTTTTTATAGATAAAATGTT+AGG - chr1_2:17374675-17374694 Msa0059880:intron 10.0%
!!! TTTTTATAGATAAAATGTTA+GGG - chr1_2:17374676-17374695 Msa0059880:intron 10.0%
!! AAAGTTATATGTTTATATAT+AGG + chr1_2:17375579-17375598 None:intergenic 10.0%
!!! TAAGAAAAATTTAAAATGAA+TGG + chr1_2:17376467-17376486 None:intergenic 10.0%
!!! TAAGAAAAATTTAAAATGAA+TGG + chr1_2:17376467-17376486 None:intergenic 10.0%
!!! AAATTAAGATATTTTTTCTT+TGG + chr1_2:17376980-17376999 None:intergenic 10.0%
!!! ACTTTATTTATTTATTTTTG+GGG + chr1_2:17377370-17377389 None:intergenic 10.0%
!! TAAAAAAATGCATTAAAAGA+AGG + chr1_2:17374662-17374681 None:intergenic 15.0%
!!! TTTTTCCATAATATCAAATT+AGG - chr1_2:17375013-17375032 Msa0059880:intron 15.0%
!!! AGTTCTGTTATTTAAATTTA+AGG + chr1_2:17375189-17375208 None:intergenic 15.0%
!!! TTATTTTGAGAAATTGTTTT+TGG + chr1_2:17375620-17375639 None:intergenic 15.0%
!!! TTCAGTTTTTACAAAAAAAA+TGG + chr1_2:17375821-17375840 None:intergenic 15.0%
!!! AAGTGTGATTTTATTTTTTA+GGG + chr1_2:17375975-17375994 None:intergenic 15.0%
!!! AAAGTGTGATTTTATTTTTT+AGG + chr1_2:17375976-17375995 None:intergenic 15.0%
!!! AAAGTGTGATTTTATTTTAT+AGG - chr1_2:17376132-17376151 Msa0059880:intron 15.0%
!!! AAGTGTGATTTTATTTTATA+GGG - chr1_2:17376133-17376152 Msa0059880:intron 15.0%
!! ACAAAATTGTGAATATTTAT+AGG - chr1_2:17376163-17376182 Msa0059880:intron 15.0%
!! CAAAATTGTGAATATTTATA+GGG - chr1_2:17376164-17376183 Msa0059880:intron 15.0%
!! AGAAAAAATATCTTAATTTC+AGG - chr1_2:17376981-17377000 Msa0059880:intron 15.0%
!!! AATATCGTATATCTTTTTTT+AGG - chr1_2:17377231-17377250 Msa0059880:intron 15.0%
!!! ATATCGTATATCTTTTTTTA+GGG - chr1_2:17377232-17377251 Msa0059880:intron 15.0%
!!! CTTTATTTATTTATTTTTGG+GGG + chr1_2:17377369-17377388 None:intergenic 15.0%
!!! TTTTTTTGTGATTGAAATTT+AGG - chr1_2:17377473-17377492 Msa0059880:intron 15.0%
!!! TTTTTTGTGATTGAAATTTA+GGG - chr1_2:17377474-17377493 Msa0059880:intron 15.0%
!! ATTAAAAGAAGGTTAAGTAA+GGG + chr1_2:17374651-17374670 None:intergenic 20.0%
!! AGTATATAATGTAAAGAGAA+GGG + chr1_2:17375299-17375318 None:intergenic 20.0%
!! TAGTATATAATGTAAAGAGA+AGG + chr1_2:17375300-17375319 None:intergenic 20.0%
!! TCTCTTTACATTATATACTA+TGG - chr1_2:17375300-17375319 Msa0059880:intron 20.0%
!! CTCTTTACATTATATACTAT+GGG - chr1_2:17375301-17375320 Msa0059880:intron 20.0%
!! TCTTTACATTATATACTATG+GGG - chr1_2:17375302-17375321 Msa0059880:intron 20.0%
!! TTTAATACACAACTAATCAT+TGG + chr1_2:17375401-17375420 None:intergenic 20.0%
!! TTTGGTAGAAATATTGAAAA+TGG - chr1_2:17375481-17375500 Msa0059880:intron 20.0%
!!! AGAAATTGTTTTTGGTTAAT+CGG + chr1_2:17375612-17375631 None:intergenic 20.0%
!!! ATGTCATTTTATGTTTTCAA+TGG - chr1_2:17375640-17375659 Msa0059880:intron 20.0%
!!! TGTCATTTTATGTTTTCAAT+GGG - chr1_2:17375641-17375660 Msa0059880:intron 20.0%
!! TATCATGTGTATGTTTAATA+TGG - chr1_2:17375763-17375782 Msa0059880:intron 20.0%
!!! AATTTTTCCATCAACATTTT+TGG + chr1_2:17376036-17376055 None:intergenic 20.0%
!!! TGTTGATGGAAAAATTTTAT+AGG - chr1_2:17376040-17376059 Msa0059880:intron 20.0%
!!! GTTGATGGAAAAATTTTATA+GGG - chr1_2:17376041-17376060 Msa0059880:intron 20.0%
!!! TGTTGATGGAAAAATTTTAT+AGG - chr1_2:17376040-17376059 Msa0059880:intron 20.0%
!!! GTTGATGGAAAAATTTTATA+GGG - chr1_2:17376041-17376060 Msa0059880:intron 20.0%
!!! TGATGATGGAAAATTTTATA+AGG - chr1_2:17376104-17376123 Msa0059880:intron 20.0%
!! TGAAAATTACCAAAAATATG+AGG - chr1_2:17376294-17376313 Msa0059880:intron 20.0%
!! GAAAATTACCAAAAATATGA+GGG - chr1_2:17376295-17376314 Msa0059880:intron 20.0%
!! AAATGAACACATAATATAGA+AGG - chr1_2:17376920-17376939 Msa0059880:intron 20.0%
!! AATGAACACATAATATAGAA+GGG - chr1_2:17376921-17376940 Msa0059880:intron 20.0%
!!! CTTTTAGTGAAGAAATTAAA+AGG - chr1_2:17377550-17377569 Msa0059880:intron 20.0%
!!! ATTTTCTGGAACTAATTTTA+GGG + chr1_2:17377607-17377626 None:intergenic 20.0%
!!! TATTTTCTGGAACTAATTTT+AGG + chr1_2:17377608-17377627 None:intergenic 20.0%
!!! TCAATGAATGTTTTATTTTC+TGG + chr1_2:17377621-17377640 None:intergenic 20.0%
!! AAAACAAACAAACATACATA+AGG + chr1_2:17377889-17377908 None:intergenic 20.0%
! GAATAACATATAGAGAGAAA+AGG + chr1_2:17374387-17374406 None:intergenic 25.0%
! TACGTGTAAACAGAAAAAAT+TGG - chr1_2:17374509-17374528 Msa0059880:CDS 25.0%
! ACGTGTAAACAGAAAAAATT+GGG - chr1_2:17374510-17374529 Msa0059880:CDS 25.0%
! AGATGTGTATCAAAATATCA+AGG - chr1_2:17374556-17374575 Msa0059880:CDS 25.0%
! TGAATTGAAAGATTTAGCTA+TGG + chr1_2:17374594-17374613 None:intergenic 25.0%
! CATTAAAAGAAGGTTAAGTA+AGG + chr1_2:17374652-17374671 None:intergenic 25.0%
! TATGTTAACCCTTAGATTAT+CGG - chr1_2:17374798-17374817 Msa0059880:intron 25.0%
!! AACTTTGCTAATTTGAAGTT+AGG - chr1_2:17374829-17374848 Msa0059880:intron 25.0%
!! ATATTTTATGAGACCATACT+TGG + chr1_2:17374862-17374881 None:intergenic 25.0%
!!! AGAACTCAAGTTCAATTTTT+TGG + chr1_2:17374893-17374912 None:intergenic 25.0%
! ATAGGCCTAATTTGATATTA+TGG + chr1_2:17375021-17375040 None:intergenic 25.0%
! TCTACAAACTTATAGATCAT+TGG + chr1_2:17375159-17375178 None:intergenic 25.0%
! GTTAGGTGGTTAATAAATTA+AGG - chr1_2:17375269-17375288 Msa0059880:intron 25.0%
! GTATATAATGTAAAGAGAAG+GGG + chr1_2:17375298-17375317 None:intergenic 25.0%
! AATATTGAAAATGGAAGCAA+CGG - chr1_2:17375490-17375509 Msa0059880:intron 25.0%
!!! GTCATTTTATGTTTTCAATG+GGG - chr1_2:17375642-17375661 Msa0059880:intron 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG - chr1_2:17376008-17376027 Msa0059880:intron 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG - chr1_2:17376009-17376028 Msa0059880:intron 25.0%
!! ATGGAAAAGTGTAATAATTG+AGG + chr1_2:17376448-17376467 None:intergenic 25.0%
! AAAGTGTAATAATTGATGTG+AGG + chr1_2:17376543-17376562 None:intergenic 25.0%
!!! TGGACTAGTAAAATTCTATT+TGG + chr1_2:17376663-17376682 None:intergenic 25.0%
!! TCTTTGTTTGATGAATAGAA+TGG + chr1_2:17376683-17376702 None:intergenic 25.0%
! ACATAATATAGAAGGGTTAA+GGG - chr1_2:17376928-17376947 Msa0059880:intron 25.0%
! TAGTATTTGTAATAATGAGG+AGG + chr1_2:17377034-17377053 None:intergenic 25.0%
! GGATAGTATTTGTAATAATG+AGG + chr1_2:17377037-17377056 None:intergenic 25.0%
! AAGGTGTGAACAAATATAAT+TGG - chr1_2:17377569-17377588 Msa0059880:intron 25.0%
! TATCAACTTGTCATGAAAAT+TGG - chr1_2:17377771-17377790 Msa0059880:intron 25.0%
! TCTTCTTCAAGAAACAAATT+AGG - chr1_2:17377823-17377842 Msa0059880:CDS 25.0%
TGTCATTGAAGAACTTTCTA+TGG - chr1_2:17374305-17374324 Msa0059880:intron 30.0%
! GAGATCTAGAGTTTAAATCT+TGG + chr1_2:17374719-17374738 None:intergenic 30.0%
ATCGTAAATCAAGTAGCTAT+AGG + chr1_2:17374741-17374760 None:intergenic 30.0%
ATGTTAACCCTTAGATTATC+GGG - chr1_2:17374799-17374818 Msa0059880:intron 30.0%
TGACATCATAACTACAATTG+AGG - chr1_2:17374985-17375004 Msa0059880:intron 30.0%
! TTTCTAAATTGCTGTTGCAT+AGG + chr1_2:17375039-17375058 None:intergenic 30.0%
GTGAATGTAAATAGAGAGAA+TGG + chr1_2:17375137-17375156 None:intergenic 30.0%
TCGAACATAAAAGTTAACCA+AGG - chr1_2:17375239-17375258 Msa0059880:intron 30.0%
CGAACATAAAAGTTAACCAA+GGG - chr1_2:17375240-17375259 Msa0059880:intron 30.0%
TTAACCAAGGGTTATAAGTT+AGG - chr1_2:17375252-17375271 Msa0059880:intron 30.0%
!! TTCCTTTTGATTGTAGAGAT+TGG - chr1_2:17375421-17375440 Msa0059880:intron 30.0%
TTCCAATCTCTACAATCAAA+AGG + chr1_2:17375426-17375445 None:intergenic 30.0%
TCCAACAACGAATCTAAATT+TGG - chr1_2:17375463-17375482 Msa0059880:intron 30.0%
ACCAAATTTAGATTCGTTGT+TGG + chr1_2:17375467-17375486 None:intergenic 30.0%
TTAATATGGACCTCTCAAAT+TGG - chr1_2:17375777-17375796 Msa0059880:intron 30.0%
AAATGGTAAATGTCAACCAT+TGG + chr1_2:17375804-17375823 None:intergenic 30.0%
ATAGGGACTAAAAATGTTGA+TGG - chr1_2:17376058-17376077 Msa0059880:intron 30.0%
ATAGGGACTAAAAATGATGA+TGG - chr1_2:17376090-17376109 Msa0059880:intron 30.0%
!! ATTGAGGATTTTTGATGATC+CGG + chr1_2:17376432-17376451 None:intergenic 30.0%
CACATAATATAGAAGGGTTA+AGG - chr1_2:17376927-17376946 Msa0059880:intron 30.0%
CATAATATAGAAGGGTTAAG+GGG - chr1_2:17376929-17376948 Msa0059880:intron 30.0%
!! CATTTTCTTTTCAGGATCAT+TGG + chr1_2:17377058-17377077 None:intergenic 30.0%
CAATGATCCTGAAAAGAAAA+TGG - chr1_2:17377056-17377075 Msa0059880:intron 30.0%
! ACTTTCTCCATTTTCTTTTC+AGG + chr1_2:17377066-17377085 None:intergenic 30.0%
TGAAAAGAAAATGGAGAAAG+TGG - chr1_2:17377065-17377084 Msa0059880:intron 30.0%
AGTAATGACTGAGATTAGAT+TGG + chr1_2:17377402-17377421 None:intergenic 30.0%
ACAAATATAATTGGCATTGC+AGG - chr1_2:17377578-17377597 Msa0059880:intron 30.0%
TAAGCAGAAAATGCAGATAT+TGG - chr1_2:17377677-17377696 Msa0059880:CDS 30.0%
CAGTGAATATCTTCAAGAAA+AGG + chr1_2:17377717-17377736 None:intergenic 30.0%
!! CATGACAAGTTGATAACATT+AGG + chr1_2:17377766-17377785 None:intergenic 30.0%
CAATACAAAAAACTGCTGAA+TGG + chr1_2:17377797-17377816 None:intergenic 30.0%
TTTGCAGAGACTATTTAACT+TGG - chr1_2:17377906-17377925 Msa0059880:CDS 30.0%
ACATATAGAGAGAAAAGGCT+TGG + chr1_2:17374382-17374401 None:intergenic 35.0%
TATTCAGTTCTGCATGTTCT+TGG - chr1_2:17374402-17374421 Msa0059880:intron 35.0%
AGAAAAAATTGGGCCAACAA+TGG - chr1_2:17374520-17374539 Msa0059880:CDS 35.0%
AGGTTAAGTAAGGGTTAACT+GGG + chr1_2:17374642-17374661 None:intergenic 35.0%
AAGGTTAAGTAAGGGTTAAC+TGG + chr1_2:17374643-17374662 None:intergenic 35.0%
CTCTTATCCCGATAATCTAA+GGG + chr1_2:17374809-17374828 None:intergenic 35.0%
TCTCTTATCCCGATAATCTA+AGG + chr1_2:17374810-17374829 None:intergenic 35.0%
GAGATCGTCAAAAGATGAAT+CGG + chr1_2:17374921-17374940 None:intergenic 35.0%
TGCTTAAGGAAAATGTCACA+GGG + chr1_2:17376004-17376023 None:intergenic 35.0%
ATGCTTAAGGAAAATGTCAC+AGG + chr1_2:17376005-17376024 None:intergenic 35.0%
TTTGGTCCCTAAAATGCTTA+AGG + chr1_2:17376018-17376037 None:intergenic 35.0%
TTAGGGACCAAAAATGTTGA+TGG - chr1_2:17376026-17376045 Msa0059880:intron 35.0%
GACGATGCATAAAATATGCA+AGG - chr1_2:17376370-17376389 Msa0059880:intron 35.0%
TGCATAAAATATGCAAGGTC+TGG - chr1_2:17376375-17376394 Msa0059880:intron 35.0%
GCATAAAATATGCAAGGTCT+GGG - chr1_2:17376376-17376395 Msa0059880:intron 35.0%
CATAAAATATGCAAGGTCTG+GGG - chr1_2:17376377-17376396 Msa0059880:intron 35.0%
!!! TTGATGATCCGGGTTTTTTT+TGG + chr1_2:17376421-17376440 None:intergenic 35.0%
!! TTGAGGATTTTTGATGATCC+GGG + chr1_2:17376431-17376450 None:intergenic 35.0%
TGGAATTTCTGCTAATTGTG+AGG + chr1_2:17376643-17376662 None:intergenic 35.0%
TGTGCAAATCTCAAATGAGA+CGG + chr1_2:17376729-17376748 None:intergenic 35.0%
AATTTCAGGAGCTATTATGC+AGG - chr1_2:17376995-17377014 Msa0059880:intron 35.0%
TAATGAGGAGGTAAAATCCA+AGG + chr1_2:17377022-17377041 None:intergenic 35.0%
ATGAAGCTACATTAAAACCG+TGG - chr1_2:17377100-17377119 Msa0059880:intron 35.0%
! TGTGATTGAAATTTAGGGTG+AGG - chr1_2:17377479-17377498 Msa0059880:intron 35.0%
! GTGATTGAAATTTAGGGTGA+GGG - chr1_2:17377480-17377499 Msa0059880:intron 35.0%
! TGATTGAAATTTAGGGTGAG+GGG - chr1_2:17377481-17377500 Msa0059880:intron 35.0%
AATATAATTGGCATTGCAGG+TGG - chr1_2:17377581-17377600 Msa0059880:intron 35.0%
! TTTTCTGCTTAAGCATGTCA+CGG + chr1_2:17377668-17377687 None:intergenic 35.0%
! GCTTCATGGTTTTCTTCAGT+TGG + chr1_2:17374345-17374364 None:intergenic 40.0%
! ATAGAGAGAAAAGGCTTGGT+GGG + chr1_2:17374378-17374397 None:intergenic 40.0%
TATAGAGAGAAAAGGCTTGG+TGG + chr1_2:17374379-17374398 None:intergenic 40.0%
TGTCTCAAAACAGCCATTGT+TGG + chr1_2:17374536-17374555 None:intergenic 40.0%
ACCACTTGAGTTCAATCACT+TGG - chr1_2:17374945-17374964 Msa0059880:intron 40.0%
ACCAAGTGATTGAACTCAAG+TGG + chr1_2:17374949-17374968 None:intergenic 40.0%
CGTTCTCATTGAAAGAACAC+AGG + chr1_2:17375093-17375112 None:intergenic 40.0%
ACCAAGGGTTATAAGTTAGG+TGG - chr1_2:17375255-17375274 Msa0059880:intron 40.0%
ACCACCTAACTTATAACCCT+TGG + chr1_2:17375259-17375278 None:intergenic 40.0%
TTGAAAATGGAAGCAACGGA+AGG - chr1_2:17375494-17375513 Msa0059880:intron 40.0%
AACCATTGGACCAATTTGAG+AGG + chr1_2:17375790-17375809 None:intergenic 40.0%
! ACAGTGGACCCTCATATTTT+TGG + chr1_2:17376306-17376325 None:intergenic 40.0%
!!! GTTTTTTTTGGTAGTGGTCG+GGG + chr1_2:17376409-17376428 None:intergenic 40.0%
!!! GGTTTTTTTTGGTAGTGGTC+GGG + chr1_2:17376410-17376429 None:intergenic 40.0%
!!! GGGTTTTTTTTGGTAGTGGT+CGG + chr1_2:17376411-17376430 None:intergenic 40.0%
GACCACTACCAAAAAAAACC+CGG - chr1_2:17376410-17376429 Msa0059880:intron 40.0%
!!! ATCCGGGTTTTTTTTGGTAG+TGG + chr1_2:17376415-17376434 None:intergenic 40.0%
GATTTCATCAACTGCTGTCA+GGG - chr1_2:17377131-17377150 Msa0059880:intron 40.0%
! AAATTTAGGGTGAGGGGATT+AGG - chr1_2:17377487-17377506 Msa0059880:intron 40.0%
GGTCTTCATCTTCAGTCTTA+AGG + chr1_2:17377647-17377666 None:intergenic 40.0%
!! TAGAGAGAAAAGGCTTGGTG+GGG + chr1_2:17374377-17374396 None:intergenic 45.0%
CAGTTCTGCATGTTCTTGGT+AGG - chr1_2:17374406-17374425 Msa0059880:intron 45.0%
GTTAGGCTATGAGCCAAGTA+TGG - chr1_2:17374846-17374865 Msa0059880:intron 45.0%
!! AACGGAAGGCATTGCAAAGA+AGG - chr1_2:17375508-17375527 Msa0059880:intron 45.0%
!! ACGGAAGGCATTGCAAAGAA+GGG - chr1_2:17375509-17375528 Msa0059880:intron 45.0%
TCACCTTGTGAGCCAAACAA+AGG + chr1_2:17375552-17375571 None:intergenic 45.0%
GACCTCTCAAATTGGTCCAA+TGG - chr1_2:17375785-17375804 Msa0059880:intron 45.0%
GGGCGTCTAATATGAGACAT+GGG - chr1_2:17376949-17376968 Msa0059880:intron 45.0%
GCTACATTAAAACCGTGGCA+TGG - chr1_2:17377105-17377124 Msa0059880:intron 45.0%
CATTAAAACCGTGGCATGGA+TGG - chr1_2:17377109-17377128 Msa0059880:intron 45.0%
GATGAAATCCATCCATGCCA+CGG + chr1_2:17377120-17377139 None:intergenic 45.0%
GGATTTCATCAACTGCTGTC+AGG - chr1_2:17377130-17377149 Msa0059880:intron 45.0%
!! ATTAATCATATTTAAAAAAA+TGG + chr1_2:17375368-17375387 None:intergenic 5.0%
!!! TTTTTTTAAATATGATTAAT+TGG - chr1_2:17375368-17375387 Msa0059880:intron 5.0%
!!! ATTTTTCAATTAAAAAAAAT+AGG - chr1_2:17376776-17376795 Msa0059880:intron 5.0%
!!! ATTAACTATTTTAATAAATA+AGG - chr1_2:17376818-17376837 Msa0059880:intron 5.0%
!!! TTAACTATTTTAATAAATAA+GGG - chr1_2:17376819-17376838 Msa0059880:intron 5.0%
!!! AACTTTATTTATTTATTTTT+GGG + chr1_2:17377371-17377390 None:intergenic 5.0%
!!! TAACTTTATTTATTTATTTT+TGG + chr1_2:17377372-17377391 None:intergenic 5.0%
!!! TATTAATTTTTAGAAATTTT+AGG - chr1_2:17377441-17377460 Msa0059880:intron 5.0%
!! CGGAAGGCATTGCAAAGAAG+GGG - chr1_2:17375510-17375529 Msa0059880:intron 50.0%
GCTGCAGTAAGGCCTTTGTT+TGG - chr1_2:17375537-17375556 Msa0059880:intron 50.0%
! AGGCCTTTGTTTGGCTCACA+AGG - chr1_2:17375546-17375565 Msa0059880:intron 50.0%
TGAGGGTCCACTGTTAAACC+CGG - chr1_2:17376312-17376331 Msa0059880:intron 50.0%
CGATGATCCGGGTTTAACAG+TGG + chr1_2:17376322-17376341 None:intergenic 50.0%
TGAGCTTAGCTCAGCTGGTT+GGG - chr1_2:17376348-17376367 Msa0059880:intron 50.0%
! GGGGCGTCTAATATGAGACA+TGG - chr1_2:17376948-17376967 Msa0059880:intron 50.0%
GGAGCTATTATGCAGGACCT+TGG - chr1_2:17377002-17377021 Msa0059880:intron 50.0%
TGGGGATGTGAGCAGCTTCA+TGG + chr1_2:17374359-17374378 None:intergenic 55.0%
GAAGGGGTCTAGCTGCAGTA+AGG - chr1_2:17375526-17375545 Msa0059880:intron 55.0%
AGCTCACGAGGACGATGATC+CGG + chr1_2:17376334-17376353 None:intergenic 55.0%
GTGAGCTTAGCTCAGCTGGT+TGG - chr1_2:17376347-17376366 Msa0059880:intron 55.0%
GCTCACGAGGACGATGATCC+GGG + chr1_2:17376333-17376352 None:intergenic 60.0%
CCAGCTGAGCTAAGCTCACG+AGG + chr1_2:17376346-17376365 None:intergenic 60.0%
CCTCGTGAGCTTAGCTCAGC+TGG - chr1_2:17376343-17376362 Msa0059880:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 17374279 17377948 17374279 ID=Msa0059880;Name=Msa0059880
chr1_2 mRNA 17374279 17377948 17374279 ID=Msa0059880-mRNA-1;Parent=Msa0059880;Name=Msa0059880-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|6|0|215
chr1_2 exon 17377804 17377948 17377804 ID=Msa0059880-mRNA-1:exon:6718;Parent=Msa0059880-mRNA-1
chr1_2 exon 17377650 17377705 17377650 ID=Msa0059880-mRNA-1:exon:6717;Parent=Msa0059880-mRNA-1
chr1_2 exon 17376660 17376790 17376660 ID=Msa0059880-mRNA-1:exon:6716;Parent=Msa0059880-mRNA-1
chr1_2 exon 17375075 17375210 17375075 ID=Msa0059880-mRNA-1:exon:6715;Parent=Msa0059880-mRNA-1
chr1_2 exon 17374484 17374627 17374484 ID=Msa0059880-mRNA-1:exon:6714;Parent=Msa0059880-mRNA-1
chr1_2 exon 17374279 17374314 17374279 ID=Msa0059880-mRNA-1:exon:6713;Parent=Msa0059880-mRNA-1
chr1_2 CDS 17377804 17377948 17377804 ID=Msa0059880-mRNA-1:cds;Parent=Msa0059880-mRNA-1
chr1_2 CDS 17377650 17377705 17377650 ID=Msa0059880-mRNA-1:cds;Parent=Msa0059880-mRNA-1
chr1_2 CDS 17376660 17376790 17376660 ID=Msa0059880-mRNA-1:cds;Parent=Msa0059880-mRNA-1
chr1_2 CDS 17375075 17375210 17375075 ID=Msa0059880-mRNA-1:cds;Parent=Msa0059880-mRNA-1
chr1_2 CDS 17374484 17374627 17374484 ID=Msa0059880-mRNA-1:cds;Parent=Msa0059880-mRNA-1
chr1_2 CDS 17374279 17374314 17374279 ID=Msa0059880-mRNA-1:cds;Parent=Msa0059880-mRNA-1
Gene Sequence

>Msa0059880

ATGGAGAAGAAATCAGAGATAATTTGTGTCATTGAAGAACTTTCTATGGTAGTAATAGTTAAACCAACTGAAGAAAACCATGAAGCTGCTCACATCCCCACCAAGCCTTTTCTCTCTATATGTTATTCAGTTCTGCATGTTCTTGAAAAAATTGGGCCAACAATGGCTGTTTTGAGACAAGATGTGTATCAAAATATCAAGAGATTGGAACTAATGCATGAATCAAATCCAACAACGAATCTAAATTTGGTAGAAATATTGAAAATGGAAGCAACGGAAGGCATTGCAAAGAAGGGGTCTAGCTGCAGTAAGGCCTTTGTTTGGCTCACAAGGACCTTGGATTTTACCTCCTCATTATTACAAATACTATCCAATGATCCTGAAAAGAAAATGGAGAAAGTGGTTGAAGAATCATATGAAGCTACATTAAAACCGTGGCATGGATGGATTTCATCAACTGCTGTCAGGGTGGCCCTAAAATTAGTTCCAGAAAATAAAACATTCATTGATCTCCTTAAGACTGAAGATGAAGACCGTGACATGCTTAAGCAGAAAATGCAGATATTGGTTTCTCTATTTGTGCCTTTTCTTGAAGATATTCACTGTATTTTAAGACTATTTAACTTGGACAAGCTGAAATCAACCTGA

Protein sequence

>Msa0059880

MEKKSEIICVIEELSMVVIVKPTEENHEAAHIPTKPFLSICYSVLHVLEKIGPTMAVLRQDVYQNIKRLELMHESNPTTNLNLVEILKMEATEGIAKKGSSCSKAFVWLTRTLDFTSSLLQILSNDPEKKMEKVVEESYEATLKPWHGWISSTAVRVALKLVPENKTFIDLLKTEDEDRDMLKQKMQILVSLFVPFLEDIHCILRLFNLDKLKST*