AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1073870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073870 MtrunA17_Chr7g0256891 96.769 650 21 0 1 650 1 650 0.0 1311
Msa1073870 MtrunA17_Chr2g0286541 25.510 196 139 2 449 639 930 1123 3.00e-13 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073870 AT2G41450.1 47.139 664 282 12 1 647 1 612 0.0 566
Msa1073870 AT2G41450.2 48.904 593 245 8 68 647 2 549 0.0 540
Msa1073870 AT4G03130.2 28.293 205 129 7 449 644 566 761 1.40e-14 77.8
Msa1073870 AT4G03130.1 28.293 205 129 7 449 644 562 757 1.42e-14 77.8
Msa1073870 AT4G03130.3 31.690 142 86 5 449 586 566 700 1.49e-11 68.2
Msa1073870 AT3G21480.1 23.175 315 198 8 358 639 708 1011 4.32e-11 67.0

Find 117 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCCCCATTCTTTGTTTA+AGG 0.153944 7_2:+71515119 Msa1073870:CDS
ACAAAGAATCTGAAGGATTT+TGG 0.192159 7_2:+71511780 Msa1073870:CDS
TTCTGTACTGCTCTCTGTTC+CGG 0.211542 7_2:+71513728 Msa1073870:CDS
TCCAGTTTGGCTGGAGATTC+AGG 0.213380 7_2:+71510579 Msa1073870:CDS
CTGATAAGGACTCTGCAAAT+TGG 0.274898 7_2:-71516401 None:intergenic
CAAACAATTCCTTCTTTAGA+TGG 0.275506 7_2:-71512495 None:intergenic
GTAATATCATCATCATCTTT+AGG 0.278251 7_2:-71510180 None:intergenic
TTTGACTTGTGTCTGTTCTA+TGG 0.278979 7_2:-71512642 None:intergenic
CGTAAAGCATTATGCTTTCC+TGG 0.295086 7_2:+71512451 Msa1073870:CDS
GTGTCATTGCAGCAGTTCTT+AGG 0.300365 7_2:-71512898 None:intergenic
AAGAAACTTTGATTGCTTTC+CGG 0.309803 7_2:-71510388 None:intergenic
GTTGATATCCTGCAGGGTTT+TGG 0.322827 7_2:+71511686 Msa1073870:intron
CTAAAGCATTGTTCAGTTGA+TGG 0.343270 7_2:-71513255 None:intergenic
TCTGTACTGCTCTCTGTTCC+GGG 0.344750 7_2:+71513729 Msa1073870:CDS
TGTCCCCATTCTTTGTTTAA+GGG 0.350626 7_2:+71515120 Msa1073870:CDS
GATTAAGAGTTCGTTGGAAC+TGG 0.354030 7_2:-71509857 None:intergenic
TTCGTTGGAACTGGAATTGC+AGG 0.354681 7_2:-71509848 None:intergenic
TCCTGAATCTCCAGCCAAAC+TGG 0.360192 7_2:-71510580 None:intergenic
AGCGGAAATATCAAAGTATC+TGG 0.362853 7_2:+71509892 Msa1073870:CDS
CCCAATGCTTTGGTAAAAGT+TGG 0.376995 7_2:+71512670 Msa1073870:CDS
CACTACCTGAAGGTATGATT+TGG 0.384485 7_2:-71510202 None:intergenic
TTCTTGTATTAGGTTATTAG+TGG 0.388331 7_2:+71516222 Msa1073870:intron
CTTGGGTGGTCTCATCGATT+TGG 0.390989 7_2:+71514899 Msa1073870:CDS
TTATTTGTTGAAGTATAAAT+CGG 0.396914 7_2:+71515065 Msa1073870:CDS
TCTGCTATTGTTAGGTCTGC+TGG 0.410098 7_2:+71515192 Msa1073870:CDS
TATAACCCTTAAACAAAGAA+TGG 0.415431 7_2:-71515125 None:intergenic
ACTACTTCTGAAATCCAGTT+TGG 0.417176 7_2:+71510566 Msa1073870:CDS
TTGAGAGATGTGTGACTAAT+GGG 0.419347 7_2:+71510409 Msa1073870:CDS
AAACTCTGTCTGCTATTGTT+AGG 0.420715 7_2:+71515184 Msa1073870:CDS
TGATAAGGACTCTGCAAATT+GGG 0.421166 7_2:-71516400 None:intergenic
ATGAATTATGCTGCAAATAC+CGG 0.424682 7_2:+71510369 Msa1073870:CDS
TGGCTGCAAAGAAAGGTATA+AGG 0.425240 7_2:+71516316 Msa1073870:CDS
CTTGAGAGATGTGTGACTAA+TGG 0.429713 7_2:+71510408 Msa1073870:CDS
TTGTCTGTCATCATTTGCTC+TGG 0.434845 7_2:-71512932 None:intergenic
ACTGTCGATCAGATTCTAGC+TGG 0.443148 7_2:+71513097 Msa1073870:CDS
TTCAACAATTGCAGGTGTAA+AGG 0.444936 7_2:-71512569 None:intergenic
ACCTCACATTCTGAATGATA+AGG 0.445474 7_2:+71515041 Msa1073870:CDS
TTGACTTGTGTCTGTTCTAT+GGG 0.445981 7_2:-71512641 None:intergenic
TTTCGACAAGGCAGATTTGT+TGG 0.448692 7_2:+71514934 Msa1073870:CDS
ATAACCCTTAAACAAAGAAT+GGG 0.449312 7_2:-71515124 None:intergenic
TCTGCATATTCTGTGTCTGC+AGG 0.453750 7_2:-71511128 None:intergenic
CGAGGATGAAGAGGCTTCCC+AGG 0.455925 7_2:-71513037 None:intergenic
TCAAAGTAAACCCAATGCTT+TGG 0.461826 7_2:+71512660 Msa1073870:CDS
CTTCTGAAATCCAGTTTGGC+TGG 0.468826 7_2:+71510570 Msa1073870:CDS
TTGTTAACTACACAGTGCTT+GGG 0.469784 7_2:+71514882 Msa1073870:intron
CTGATCGACAGTCAACAAAC+TGG 0.471082 7_2:-71513086 None:intergenic
TTTGATGACAATGCTAACTC+TGG 0.474813 7_2:+71512514 Msa1073870:CDS
TCGGAGCTTCTAAATGCATA+TGG 0.479623 7_2:-71513218 None:intergenic
AAGAGAGATTAAGAGTTCGT+TGG 0.488220 7_2:-71509863 None:intergenic
AGATATTGTTTCTAGAGCTC+CGG 0.491665 7_2:+71511711 Msa1073870:CDS
AGATTCACCGATGAAGATTG+AGG 0.494644 7_2:-71509711 None:intergenic
GGCATGTTAACAATCTGATA+AGG 0.498089 7_2:-71516415 None:intergenic
CATGATTCTCCATCTAAAGA+AGG 0.505386 7_2:+71512486 Msa1073870:CDS
CTGTCGATCAGATTCTAGCT+GGG 0.506118 7_2:+71513098 Msa1073870:CDS
AGACATTGAAGAAGCAATGA+TGG 0.507527 7_2:+71516296 Msa1073870:CDS
GAATTCTGATGAGGCTGTGA+GGG 0.507711 7_2:-71512547 None:intergenic
ATGTATATGACTGAGCTACC+TGG 0.508901 7_2:+71510345 Msa1073870:CDS
GCAATGATGGCTGCAAAGAA+AGG 0.515441 7_2:+71516309 Msa1073870:CDS
TATTACCAAATCATACCTTC+AGG 0.525549 7_2:+71510197 Msa1073870:CDS
GGTGAAAGTGCTGGCTTCGA+CGG 0.539139 7_2:-71509827 None:intergenic
AGGATTGGCCCTACCAGCCT+CGG 0.539403 7_2:-71513130 None:intergenic
CGGAAGAGACTTCAAAATGT+TGG 0.539655 7_2:+71511731 Msa1073870:CDS
GTTGGATCTTCACGAGGACG+TGG 0.542047 7_2:+71512688 Msa1073870:CDS
GGATTCCGCAGAACAAGGAT+TGG 0.544036 7_2:-71513145 None:intergenic
ATAGCACAGGTGGATACAAA+AGG 0.544150 7_2:+71512394 Msa1073870:CDS
TGACTTCAACGAGGATGAAG+AGG 0.545463 7_2:-71513046 None:intergenic
GGTGGAACTATTGCCTCTGA+TGG 0.550900 7_2:+71513656 Msa1073870:CDS
CGTAGAACATGAGTTCATGC+TGG 0.555405 7_2:+71510152 Msa1073870:intron
CGAGGACGTGGAAAACTCAA+TGG 0.557908 7_2:+71512700 Msa1073870:CDS
TAATTGAAGTATCACAATGA+GGG 0.558462 7_2:-71513167 None:intergenic
AATGATGACAGACAAGCAAA+TGG 0.562041 7_2:+71512940 Msa1073870:CDS
AAACATTCCTCAATCTTCAT+CGG 0.570166 7_2:+71509704 Msa1073870:CDS
GGAATTGCAGGTGAAAGTGC+TGG 0.574962 7_2:-71509836 None:intergenic
ATACAAAAGGTAGAGCCCGC+AGG 0.578945 7_2:+71512407 Msa1073870:CDS
TGAGGGGATTCCGCAGAACA+AGG 0.583621 7_2:-71513150 None:intergenic
CTGCATATTCTGTGTCTGCA+GGG 0.585523 7_2:-71511127 None:intergenic
TTTGCAGCATAATTCATCCC+AGG 0.585813 7_2:-71510363 None:intergenic
TAAGGACTTTCGACAGTGAG+TGG 0.588593 7_2:+71516334 Msa1073870:CDS
TTAACTACACAGTGCTTGGG+TGG 0.593202 7_2:+71514885 Msa1073870:intron
AATTTCACTCCTGAAGAAAG+AGG 0.594165 7_2:+71510038 Msa1073870:CDS
TGTGGTTGAGCTTCCATCAG+AGG 0.594722 7_2:-71513669 None:intergenic
TCCTTATCATTCAGAATGTG+AGG 0.599269 7_2:-71515042 None:intergenic
CGTTGAAGTCAAAGAGAGTG+AGG 0.602805 7_2:+71513058 Msa1073870:CDS
TCAACCACACATGTTGTCAC+AGG 0.605648 7_2:+71513683 Msa1073870:CDS
TAAGAAAACACAGCTTACAA+AGG 0.606148 7_2:+71513308 Msa1073870:CDS
TGTCGATCAGATTCTAGCTG+GGG 0.610722 7_2:+71513099 Msa1073870:CDS
TGTATATGACTGAGCTACCT+GGG 0.612382 7_2:+71510346 Msa1073870:CDS
TTGATGACAATGCTAACTCT+GGG 0.616144 7_2:+71512515 Msa1073870:CDS
CATGAGACAAGAGCTCGACA+TGG 0.620599 7_2:+71516371 Msa1073870:CDS
TTGAAGTCAAAGAGAGTGAG+GGG 0.624778 7_2:+71513060 Msa1073870:CDS
GTAATTGAAGTATCACAATG+AGG 0.625076 7_2:-71513168 None:intergenic
AATTGAAGTATCACAATGAG+GGG 0.625488 7_2:-71513166 None:intergenic
TGGGGAGACAAAGAATCTGA+AGG 0.626446 7_2:+71511773 Msa1073870:CDS
CAGAGGCAATAGTTCCACCT+AGG 0.629274 7_2:-71513652 None:intergenic
GTTGAAGTCAAAGAGAGTGA+GGG 0.634453 7_2:+71513059 Msa1073870:CDS
CAATGCAATCTATCAACGGA+AGG 0.636176 7_2:+71511169 Msa1073870:CDS
CTGTCAATGCAATCTATCAA+CGG 0.636846 7_2:+71511165 Msa1073870:CDS
ATTGCATTGACAGCTGCAAG+TGG 0.637300 7_2:-71511155 None:intergenic
ATCATGAGAGTCGAACCACC+AGG 0.638186 7_2:-71512469 None:intergenic
GGAATTCTGATGAGGCTGTG+AGG 0.653417 7_2:-71512548 None:intergenic
TTGCATTGACAGCTGCAAGT+GGG 0.654261 7_2:-71511154 None:intergenic
TAGGGCCAATCCTTGTTCTG+CGG 0.655927 7_2:+71513140 Msa1073870:CDS
AATTCTGATGAGGCTGTGAG+GGG 0.660055 7_2:-71512546 None:intergenic
TTTGGCTGGAGATTCAGGAA+AGG 0.669858 7_2:+71510584 Msa1073870:CDS
ATATAGGTGATTGAAGACCT+AGG 0.671284 7_2:+71513635 Msa1073870:intron
AAATGGTGCAGATTGTACCC+AGG 0.675885 7_2:+71512957 Msa1073870:CDS
AAAGCATTATGCTTTCCTGG+TGG 0.677104 7_2:+71512454 Msa1073870:CDS
GTAAAAGTTGGATCTTCACG+AGG 0.678966 7_2:+71512682 Msa1073870:CDS
TTAATCTCTCTTCCTCGTAG+CGG 0.679130 7_2:+71509874 Msa1073870:CDS
TTGTCCTGTGACAACATGTG+TGG 0.679152 7_2:-71513687 None:intergenic
TAAGGACTCTGCAAATTGGG+AGG 0.680636 7_2:-71516397 None:intergenic
GCTATTGTTAGGTCTGCTGG+TGG 0.684582 7_2:+71515195 Msa1073870:CDS
TAACCCTTAAACAAAGAATG+GGG 0.687115 7_2:-71515123 None:intergenic
CACTCTCTTTGACTTCAACG+AGG 0.710470 7_2:-71513055 None:intergenic
GGTGTAAAGGAATTCTGATG+AGG 0.724005 7_2:-71512556 None:intergenic
ACTTTGATATTTCCGCTACG+AGG 0.724866 7_2:-71509886 None:intergenic
TAGGTGATTGAAGACCTAGG+TGG 0.771557 7_2:+71513638 Msa1073870:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTATTTTTATAT+TGG + chr7_2:71515459-71515478 Msa1073870:intron 0.0%
!!! TATTTATTTATTTTTATATT+GGG + chr7_2:71515460-71515479 Msa1073870:intron 0.0%
!! AAAAAAAAAAAACTTAAAAC+TGG - chr7_2:71511226-71511245 None:intergenic 10.0%
!!! TAAATTTGAAATTGAAAAAT+TGG - chr7_2:71514155-71514174 None:intergenic 10.0%
!! TAAAAAATAAGTATCAATAT+TGG + chr7_2:71514350-71514369 Msa1073870:intron 10.0%
!! GTTCAATATAAAATTATAAA+TGG - chr7_2:71514512-71514531 None:intergenic 10.0%
!!! TTATAATTTTATATTGAACT+AGG + chr7_2:71514513-71514532 Msa1073870:intron 10.0%
!!! TATAATTTTATATTGAACTA+GGG + chr7_2:71514514-71514533 Msa1073870:intron 10.0%
!! GATTATTTATAATTATAACA+AGG + chr7_2:71514854-71514873 Msa1073870:intron 10.0%
!! AAAAAATTGTTAATCGTTAA+TGG - chr7_2:71509969-71509988 None:intergenic 15.0%
!!! TTTTTTAAATTTGAAATGTC+AGG + chr7_2:71511248-71511267 Msa1073870:intron 15.0%
!!! TTTTAACAAAAAAAAATCTC+TGG + chr7_2:71511818-71511837 Msa1073870:intron 15.0%
!! TTTAGAAAATAATCTCAATT+TGG - chr7_2:71512759-71512778 None:intergenic 15.0%
!!! TCTAAATTAATATTTTTTGC+TGG + chr7_2:71512773-71512792 Msa1073870:intron 15.0%
!! AAAAATTTATCATGACTATT+TGG + chr7_2:71512808-71512827 Msa1073870:intron 15.0%
!!! AAAGCATTTAAAAAATACAT+GGG - chr7_2:71513345-71513364 None:intergenic 15.0%
!!! TAAAGCATTTAAAAAATACA+TGG - chr7_2:71513346-71513365 None:intergenic 15.0%
!!! TCTTGGTTTAAATAAATTTT+TGG + chr7_2:71513866-71513885 Msa1073870:intron 15.0%
!!! TATCGATTTGTAATTTATAA+AGG + chr7_2:71513981-71514000 Msa1073870:intron 15.0%
!!! ATCGATTTGTAATTTATAAA+GGG + chr7_2:71513982-71514001 Msa1073870:intron 15.0%
!!! ACTTATTTAACTTGATTAAA+AGG - chr7_2:71514331-71514350 None:intergenic 15.0%
!!! TTATTTGTTGAAGTATAAAT+CGG + chr7_2:71515065-71515084 Msa1073870:CDS 15.0%
!! ATCAAAAACTATTAGATTAT+AGG - chr7_2:71515666-71515685 None:intergenic 15.0%
!!! AATCTAATAGTTTTTGATAT+TGG + chr7_2:71515668-71515687 Msa1073870:intron 15.0%
!! CATTAAATAAACATACTATA+TGG - chr7_2:71516105-71516124 None:intergenic 15.0%
!! AAGAATATCGTGTAAAATTA+GGG - chr7_2:71510069-71510088 None:intergenic 20.0%
!! AAAGAATATCGTGTAAAATT+AGG - chr7_2:71510070-71510089 None:intergenic 20.0%
!!! ATGTTTATGACTTCATATTT+TGG + chr7_2:71510650-71510669 Msa1073870:intron 20.0%
!! AACTTAAAACTGGAATATAA+AGG - chr7_2:71511216-71511235 None:intergenic 20.0%
!! CAATAAATAGCTATAATCTA+TGG + chr7_2:71511633-71511652 Msa1073870:intron 20.0%
!! ATTCTAAACTAAAAAATGAG+TGG - chr7_2:71512109-71512128 None:intergenic 20.0%
!!! TAAAATATGCTTCTTTTGTT+TGG + chr7_2:71512308-71512327 Msa1073870:intron 20.0%
!!! AAAATATGCTTCTTTTGTTT+GGG + chr7_2:71512309-71512328 Msa1073870:intron 20.0%
!!! AATCTACAAAAGTTTTAAAG+AGG + chr7_2:71513013-71513032 Msa1073870:CDS 20.0%
!!! ATCTACAAAAGTTTTAAAGA+GGG + chr7_2:71513014-71513033 Msa1073870:CDS 20.0%
!! GATCTACAAAAAGAAAAATT+AGG - chr7_2:71513563-71513582 None:intergenic 20.0%
!!! TAGAGATTTGTTTTACATAT+AGG + chr7_2:71513619-71513638 Msa1073870:intron 20.0%
!! ACAAATTTCAGTTTGAATTT+AGG - chr7_2:71513785-71513804 None:intergenic 20.0%
!! ATTTGTTTATAGTTGAAATC+AGG + chr7_2:71513799-71513818 Msa1073870:intron 20.0%
!! ATTCATAACAATAGAGATTA+GGG - chr7_2:71513902-71513921 None:intergenic 20.0%
!! AATTCATAACAATAGAGATT+AGG - chr7_2:71513903-71513922 None:intergenic 20.0%
!! AATATCTTCAATTCAAAGTA+TGG - chr7_2:71514206-71514225 None:intergenic 20.0%
!! AAGATATTCTTTAATCTTGT+TGG + chr7_2:71514218-71514237 Msa1073870:intron 20.0%
!! AATTGGTAGATGATATAAAT+TGG - chr7_2:71514285-71514304 None:intergenic 20.0%
!!! ATCTACCAATTTATTGTTTT+TGG + chr7_2:71514294-71514313 Msa1073870:intron 20.0%
!! TAAGTATCAATATTGGAAAT+TGG + chr7_2:71514357-71514376 Msa1073870:intron 20.0%
!! TTGAATATGAAATAATGTCA+TGG - chr7_2:71514665-71514684 None:intergenic 20.0%
!!! TTTGTTTTGATTATCTTTCT+AGG - chr7_2:71514743-71514762 None:intergenic 20.0%
!! TACTAACACAATCTTAAAAA+TGG + chr7_2:71515003-71515022 Msa1073870:intron 20.0%
!!! AAGTTCTAGTATTATTTTTC+TGG + chr7_2:71515224-71515243 Msa1073870:intron 20.0%
!!! ACCTGTATAAGTTTTTTTAA+GGG - chr7_2:71515267-71515286 None:intergenic 20.0%
!!! TACCTGTATAAGTTTTTTTA+AGG - chr7_2:71515268-71515287 None:intergenic 20.0%
!!! AATTAATGAAACTTGTTAAC+CGG - chr7_2:71516204-71516223 None:intergenic 20.0%
!! GTTTCATTAATTCTTGTATT+AGG + chr7_2:71516212-71516231 Msa1073870:intron 20.0%
!! ATTGAGGAATGTTTTCTTTT+TGG - chr7_2:71509698-71509717 None:intergenic 25.0%
!! AATGAAAAGAAGGGTTTTTA+GGG - chr7_2:71509742-71509761 None:intergenic 25.0%
!! CTATATTCTTTTCATTTCTC+AGG + chr7_2:71509790-71509809 Msa1073870:intron 25.0%
! GTAATATCATCATCATCTTT+AGG - chr7_2:71510183-71510202 None:intergenic 25.0%
!! ATGCTTTGAATGTAAATTGT+TGG + chr7_2:71510302-71510321 Msa1073870:intron 25.0%
!! TGCTTTGAATGTAAATTGTT+GGG + chr7_2:71510303-71510322 Msa1073870:intron 25.0%
!! ACTATACTTCTGTTTTGTAT+TGG + chr7_2:71510621-71510640 Msa1073870:intron 25.0%
! ATAGTGCATTAGGTTATTTA+TGG - chr7_2:71510691-71510710 None:intergenic 25.0%
!!! GTTTTCTTTTATTTCTAAGC+CGG - chr7_2:71510950-71510969 None:intergenic 25.0%
! TTCATGAAATAAACTTGCAA+TGG + chr7_2:71511283-71511302 Msa1073870:intron 25.0%
! ACATTTAGTGAAAACATACA+CGG + chr7_2:71511466-71511485 Msa1073870:intron 25.0%
!!! TTATAGACTTTAGAAGTATC+TGG + chr7_2:71511976-71511995 Msa1073870:intron 25.0%
!! ATAATCTCAATTTGGAGTAT+GGG - chr7_2:71512751-71512770 None:intergenic 25.0%
!! AATAATCTCAATTTGGAGTA+TGG - chr7_2:71512752-71512771 None:intergenic 25.0%
!! ATTAGCATAATTTTCATCCT+GGG - chr7_2:71512977-71512996 None:intergenic 25.0%
!! TATTAGCATAATTTTCATCC+TGG - chr7_2:71512978-71512997 None:intergenic 25.0%
!! TAATTGAAGTATCACAATGA+GGG - chr7_2:71513170-71513189 None:intergenic 25.0%
!! AAGAACTCTGAAAAATGTAT+TGG + chr7_2:71513192-71513211 Msa1073870:CDS 25.0%
! AGATGGTAGGAAAAATAATA+GGG + chr7_2:71513521-71513540 Msa1073870:intron 25.0%
!! ATTTTTCTTTTTGTAGATCC+TGG + chr7_2:71513564-71513583 Msa1073870:intron 25.0%
! CAAAATTTAAATCAATTGCC+AGG - chr7_2:71513585-71513604 None:intergenic 25.0%
!!! CTGGCAATTGATTTAAATTT+TGG + chr7_2:71513583-71513602 Msa1073870:intron 25.0%
! TTCATAACAATAGAGATTAG+GGG - chr7_2:71513901-71513920 None:intergenic 25.0%
!!! GATTGTAAGTTAGCTTTAAA+TGG - chr7_2:71514022-71514041 None:intergenic 25.0%
! TTTGCAATAAATAATGACTC+TGG - chr7_2:71514049-71514068 None:intergenic 25.0%
!! ATTTAAGAACTATTTGAGGT+TGG + chr7_2:71514117-71514136 Msa1073870:intron 25.0%
!! TTTAAGAACTATTTGAGGTT+GGG + chr7_2:71514118-71514137 Msa1073870:intron 25.0%
! AACTTGATTAAAAGGAGTAA+TGG - chr7_2:71514323-71514342 None:intergenic 25.0%
! ACTGAATAAGTAACTAGTTA+AGG + chr7_2:71514486-71514505 Msa1073870:intron 25.0%
!!! ACCTTTTTTCTGATGATTAA+TGG + chr7_2:71514580-71514599 Msa1073870:intron 25.0%
! AAAAAGGATTCATTTGAAAG+CGG - chr7_2:71514606-71514625 None:intergenic 25.0%
!!! GAATCCTTTTTTTTTCTTTG+TGG + chr7_2:71514615-71514634 Msa1073870:intron 25.0%
! GATACCACAAAGAAAAAAAA+AGG - chr7_2:71514622-71514641 None:intergenic 25.0%
!! TTAAAAGAAAGTTTTCGACA+AGG + chr7_2:71514922-71514941 Msa1073870:CDS 25.0%
! ATAACCCTTAAACAAAGAAT+GGG - chr7_2:71515127-71515146 None:intergenic 25.0%
! TATAACCCTTAAACAAAGAA+TGG - chr7_2:71515128-71515147 None:intergenic 25.0%
!!! TGTATAAGTTTTTTTAAGGG+AGG - chr7_2:71515264-71515283 None:intergenic 25.0%
! TCCCTTAAAAAAACTTATAC+AGG + chr7_2:71515263-71515282 Msa1073870:intron 25.0%
! TGGTTTAAAGAATCCTAATT+TGG + chr7_2:71515556-71515575 Msa1073870:intron 25.0%
! AGTATATACATCTCCAAATT+AGG - chr7_2:71515572-71515591 None:intergenic 25.0%
! TCTGTGCAATTAAAATCTAA+AGG + chr7_2:71515622-71515641 Msa1073870:intron 25.0%
! ATCCATGAATAGATATAGAA+CGG - chr7_2:71515741-71515760 None:intergenic 25.0%
! AACAAATAATGACAAATGCT+AGG + chr7_2:71515892-71515911 Msa1073870:intron 25.0%
! ACAAATAATGACAAATGCTA+GGG + chr7_2:71515893-71515912 Msa1073870:intron 25.0%
! AAAGTACATGTTTAGCATAA+AGG - chr7_2:71515987-71516006 None:intergenic 25.0%
! ATAAACATACTATATGGACA+TGG - chr7_2:71516099-71516118 None:intergenic 25.0%
! TTCTTGTATTAGGTTATTAG+TGG + chr7_2:71516222-71516241 Msa1073870:intron 25.0%
AAACATTCCTCAATCTTCAT+CGG + chr7_2:71509704-71509723 Msa1073870:CDS 30.0%
! GAATGAAAAGAAGGGTTTTT+AGG - chr7_2:71509743-71509762 None:intergenic 30.0%
AGAAATCGAGAGATTAGAAA+TGG - chr7_2:71509772-71509791 None:intergenic 30.0%
! CAAATAGAAGCGTAGTTAAT+TGG - chr7_2:71509933-71509952 None:intergenic 30.0%
TGATTATAATGCTTGCTCTT+GGG + chr7_2:71510119-71510138 Msa1073870:intron 30.0%
TATTACCAAATCATACCTTC+AGG + chr7_2:71510197-71510216 Msa1073870:CDS 30.0%
ATGTAAATTGTTGGGTTTAC+AGG + chr7_2:71510311-71510330 Msa1073870:intron 30.0%
ATGAATTATGCTGCAAATAC+CGG + chr7_2:71510369-71510388 Msa1073870:CDS 30.0%
AAGAAACTTTGATTGCTTTC+CGG - chr7_2:71510391-71510410 None:intergenic 30.0%
AGTTAGAGTAATATCTGACA+CGG - chr7_2:71510481-71510500 None:intergenic 30.0%
GTCAGATATTACTCTAACTA+TGG + chr7_2:71510482-71510501 Msa1073870:intron 30.0%
! AAAACAGAAGTATAGTCATC+AGG - chr7_2:71510617-71510636 None:intergenic 30.0%
ATGTACTAAGATAGTGCATT+AGG - chr7_2:71510701-71510720 None:intergenic 30.0%
AGTATCAGCAGATATCAATT+AGG - chr7_2:71510896-71510915 None:intergenic 30.0%
TTAGCCTCTTAGAATGAAAA+GGG - chr7_2:71510921-71510940 None:intergenic 30.0%
AATGCATAGCAGTAAACATA+AGG + chr7_2:71511008-71511027 Msa1073870:intron 30.0%
ATGCATAGCAGTAAACATAA+GGG + chr7_2:71511009-71511028 Msa1073870:intron 30.0%
! ATCCACTTTCATCATTTTAC+AGG + chr7_2:71511076-71511095 Msa1073870:intron 30.0%
AACCTGTAAAATGATGAAAG+TGG - chr7_2:71511081-71511100 None:intergenic 30.0%
! TAAATTTGAAATGTCAGGTC+TGG + chr7_2:71511253-71511272 Msa1073870:intron 30.0%
ACTGAGAATACTTATCATGA+AGG - chr7_2:71511427-71511446 None:intergenic 30.0%
! GTCTTTTTACATACGTTGAT+AGG + chr7_2:71511604-71511623 Msa1073870:intron 30.0%
! ACAAAGAATCTGAAGGATTT+TGG + chr7_2:71511780-71511799 Msa1073870:CDS 30.0%
AGGTCTATAGACTTAATGAA+AGG + chr7_2:71511906-71511925 Msa1073870:intron 30.0%
ATCTGGATTATACTGTGAAT+TGG + chr7_2:71511993-71512012 Msa1073870:intron 30.0%
TGGTCTATAGACTTAATGAA+AGG - chr7_2:71512237-71512256 None:intergenic 30.0%
!! GATCTGAATTCTGAAATCTT+TGG - chr7_2:71512257-71512276 None:intergenic 30.0%
! TTTTATTCGACCAAAAATGC+AGG + chr7_2:71512360-71512379 Msa1073870:intron 30.0%
TTTATTCGACCAAAAATGCA+GGG + chr7_2:71512361-71512380 Msa1073870:intron 30.0%
! TTACGAATATCAGCTTTTAC+AGG - chr7_2:71512436-71512455 None:intergenic 30.0%
CAAACAATTCCTTCTTTAGA+TGG - chr7_2:71512498-71512517 None:intergenic 30.0%
! AATTGAAGTATCACAATGAG+GGG - chr7_2:71513169-71513188 None:intergenic 30.0%
! GTAATTGAAGTATCACAATG+AGG - chr7_2:71513171-71513190 None:intergenic 30.0%
TAAGAAAACACAGCTTACAA+AGG + chr7_2:71513308-71513327 Msa1073870:CDS 30.0%
!! AAAAGAGTGTTACATTCGAA+AGG - chr7_2:71513483-71513502 None:intergenic 30.0%
! TCGAATGTAACACTCTTTTT+AGG + chr7_2:71513484-71513503 Msa1073870:intron 30.0%
! CGAATGTAACACTCTTTTTA+GGG + chr7_2:71513485-71513504 Msa1073870:intron 30.0%
CAGATGGTAGGAAAAATAAT+AGG + chr7_2:71513520-71513539 Msa1073870:intron 30.0%
GATGGTAGGAAAAATAATAG+GGG + chr7_2:71513522-71513541 Msa1073870:intron 30.0%
ATTAGAATCTTAGCATCTCT+TGG + chr7_2:71513849-71513868 Msa1073870:intron 30.0%
! TTTTCCTCAAAATTTCAGTC+TGG + chr7_2:71514092-71514111 Msa1073870:intron 30.0%
GGTCATTTAAGAACTATTTG+AGG + chr7_2:71514113-71514132 Msa1073870:intron 30.0%
GGACACCAAAAACAATAAAT+TGG - chr7_2:71514302-71514321 None:intergenic 30.0%
AATATTGGAAATTGGAGTGT+TGG + chr7_2:71514365-71514384 Msa1073870:intron 30.0%
GTATCCATCTTCATACTTAT+TGG - chr7_2:71514546-71514565 None:intergenic 30.0%
GCCATTAATCATCAGAAAAA+AGG - chr7_2:71514584-71514603 None:intergenic 30.0%
! GTTTTGCATTTTACCAAGTT+GGG - chr7_2:71514695-71514714 None:intergenic 30.0%
! TGTTTTGCATTTTACCAAGT+TGG - chr7_2:71514696-71514715 None:intergenic 30.0%
AGGATCAATTAATCATCCAA+AGG - chr7_2:71514723-71514742 None:intergenic 30.0%
AATGTGTACATGTAAGAATG+TGG - chr7_2:71514829-71514848 None:intergenic 30.0%
TCAATGTAGACAAGAAAGTT+TGG - chr7_2:71514969-71514988 None:intergenic 30.0%
TCTACATTGAGTTATTGTTG+CGG + chr7_2:71514979-71514998 Msa1073870:intron 30.0%
TAACCCTTAAACAAAGAATG+GGG - chr7_2:71515126-71515145 None:intergenic 30.0%
ATACATTAGCCATAGATGAA+AGG - chr7_2:71515295-71515314 None:intergenic 30.0%
! GTGCTAAAAGTACAAAGTAT+TGG + chr7_2:71515517-71515536 Msa1073870:intron 30.0%
TTGGAACGCAAGTAATTAAA+TGG + chr7_2:71515536-71515555 Msa1073870:intron 30.0%
! TGTTTAACAATAGTGTTGCT+AGG + chr7_2:71515591-71515610 Msa1073870:intron 30.0%
! GTTTAACAATAGTGTTGCTA+GGG + chr7_2:71515592-71515611 Msa1073870:intron 30.0%
! TTTAACAATAGTGTTGCTAG+GGG + chr7_2:71515593-71515612 Msa1073870:intron 30.0%
ATGAATAGATATAGAACGGA+GGG - chr7_2:71515737-71515756 None:intergenic 30.0%
ACTTCTAGTCTGAAAATTCA+TGG + chr7_2:71515794-71515813 Msa1073870:intron 30.0%
!!! TTCTGTACTATACCCTTTTT+TGG + chr7_2:71515845-71515864 Msa1073870:intron 30.0%
!!! TCTGTACTATACCCTTTTTT+GGG + chr7_2:71515846-71515865 Msa1073870:intron 30.0%
TAATCATTTATGATGCACCT+TGG + chr7_2:71516053-71516072 Msa1073870:intron 30.0%
GGAGTTGTGAATGAAAAGAA+GGG - chr7_2:71509751-71509770 None:intergenic 35.0%
TGGAGTTGTGAATGAAAAGA+AGG - chr7_2:71509752-71509771 None:intergenic 35.0%
AAGAGAGATTAAGAGTTCGT+TGG - chr7_2:71509866-71509885 None:intergenic 35.0%
! AGCGGAAATATCAAAGTATC+TGG + chr7_2:71509892-71509911 Msa1073870:CDS 35.0%
CAAACCATAAAAACGCTTCT+GGG + chr7_2:71510015-71510034 Msa1073870:CDS 35.0%
!!! AATTCCCAGAAGCGTTTTTA+TGG - chr7_2:71510022-71510041 None:intergenic 35.0%
AATTTCACTCCTGAAGAAAG+AGG + chr7_2:71510038-71510057 Msa1073870:CDS 35.0%
GTGATTATAATGCTTGCTCT+TGG + chr7_2:71510118-71510137 Msa1073870:intron 35.0%
TAAATTGTTGGGTTTACAGG+AGG + chr7_2:71510314-71510333 Msa1073870:intron 35.0%
TTGAGAGATGTGTGACTAAT+GGG + chr7_2:71510409-71510428 Msa1073870:CDS 35.0%
!! ACTACTTCTGAAATCCAGTT+TGG + chr7_2:71510566-71510585 Msa1073870:CDS 35.0%
GACACACACTCTTCTTAATT+TGG - chr7_2:71510726-71510745 None:intergenic 35.0%
ATCACAAAGACTAGTATCCT+GGG - chr7_2:71510782-71510801 None:intergenic 35.0%
AATCACAAAGACTAGTATCC+TGG - chr7_2:71510783-71510802 None:intergenic 35.0%
CTTAGCCTCTTAGAATGAAA+AGG - chr7_2:71510922-71510941 None:intergenic 35.0%
!!! TCTTTTATTTCTAAGCCGGA+TGG - chr7_2:71510946-71510965 None:intergenic 35.0%
CTGTCAATGCAATCTATCAA+CGG + chr7_2:71511165-71511184 Msa1073870:CDS 35.0%
CAATCTCAGTAAGGTTCTAT+TGG + chr7_2:71511307-71511326 Msa1073870:intron 35.0%
GTATGTAAAAAGACAGCAGA+TGG - chr7_2:71511598-71511617 None:intergenic 35.0%
! ATTACTAGTTGATATCCTGC+AGG + chr7_2:71511679-71511698 Msa1073870:intron 35.0%
! TTACTAGTTGATATCCTGCA+GGG + chr7_2:71511680-71511699 Msa1073870:intron 35.0%
!! AGATATTGTTTCTAGAGCTC+CGG + chr7_2:71511711-71511730 Msa1073870:CDS 35.0%
!!! CAACATTTTGAAGTCTCTTC+CGG - chr7_2:71511733-71511752 None:intergenic 35.0%
! CATTCGCTCTATTTTCTGTT+GGG + chr7_2:71511754-71511773 Msa1073870:CDS 35.0%
! ATTCGCTCTATTTTCTGTTG+GGG + chr7_2:71511755-71511774 Msa1073870:CDS 35.0%
!!! TGAAGGATTTTGGCTTAAAC+AGG + chr7_2:71511790-71511809 Msa1073870:CDS 35.0%
! ATTCAAAGAGTGTAGATCTG+AGG + chr7_2:71511886-71511905 Msa1073870:intron 35.0%
GAATAAAAGTTAACTCCCTC+CGG - chr7_2:71512348-71512367 None:intergenic 35.0%
! GATGAAAAACCCTGCATTTT+TGG - chr7_2:71512373-71512392 None:intergenic 35.0%
! TTTTTCATCAATAGCACAGG+TGG + chr7_2:71512384-71512403 Msa1073870:CDS 35.0%
CATGATTCTCCATCTAAAGA+AGG + chr7_2:71512486-71512505 Msa1073870:CDS 35.0%
! TTTGATGACAATGCTAACTC+TGG + chr7_2:71512514-71512533 Msa1073870:CDS 35.0%
! TTGATGACAATGCTAACTCT+GGG + chr7_2:71512515-71512534 Msa1073870:CDS 35.0%
TTCAACAATTGCAGGTGTAA+AGG - chr7_2:71512572-71512591 None:intergenic 35.0%
! TGCTCATTTTCAACAATTGC+AGG - chr7_2:71512580-71512599 None:intergenic 35.0%
!! TTGACTTGTGTCTGTTCTAT+GGG - chr7_2:71512644-71512663 None:intergenic 35.0%
!! TTTGACTTGTGTCTGTTCTA+TGG - chr7_2:71512645-71512664 None:intergenic 35.0%
TCAAAGTAAACCCAATGCTT+TGG + chr7_2:71512660-71512679 Msa1073870:CDS 35.0%
!! CCAACTTTTACCAAAGCATT+GGG - chr7_2:71512673-71512692 None:intergenic 35.0%
! TCCAACTTTTACCAAAGCAT+TGG - chr7_2:71512674-71512693 None:intergenic 35.0%
AATGATGACAGACAAGCAAA+TGG + chr7_2:71512940-71512959 Msa1073870:CDS 35.0%
!!! AAAAGTTTTAAAGAGGGCCT+GGG + chr7_2:71513020-71513039 Msa1073870:CDS 35.0%
!! CTAAAGCATTGTTCAGTTGA+TGG - chr7_2:71513258-71513277 None:intergenic 35.0%
TACATTCGAAAGGTAGAGAT+CGG - chr7_2:71513473-71513492 None:intergenic 35.0%
!!! GTAACACTCTTTTTAGGGTT+TGG + chr7_2:71513490-71513509 Msa1073870:intron 35.0%
! TTTGGTTTACTACAGATGGT+AGG + chr7_2:71513508-71513527 Msa1073870:intron 35.0%
ATATAGGTGATTGAAGACCT+AGG + chr7_2:71513635-71513654 Msa1073870:intron 35.0%
TGAAATTAGATCAGCACATC+TGG - chr7_2:71513952-71513971 None:intergenic 35.0%
! ATGACCAGACTGAAATTTTG+AGG - chr7_2:71514099-71514118 None:intergenic 35.0%
TACCATTGAAATGTGCCAAA+AGG + chr7_2:71514173-71514192 Msa1073870:intron 35.0%
! TACCTTTTGGCACATTTCAA+TGG - chr7_2:71514178-71514197 None:intergenic 35.0%
TTGGACATTGGATGAAAACT+GGG + chr7_2:71514384-71514403 Msa1073870:intron 35.0%
CATGCCAATAAGTATGAAGA+TGG + chr7_2:71514539-71514558 Msa1073870:intron 35.0%
AAATGCAAAACAGCATCCTT+TGG + chr7_2:71514704-71514723 Msa1073870:intron 35.0%
GTACATGTAAGAATGTGGTA+GGG - chr7_2:71514824-71514843 None:intergenic 35.0%
TGTACATGTAAGAATGTGGT+AGG - chr7_2:71514825-71514844 None:intergenic 35.0%
ATTGTTAACTACACAGTGCT+TGG + chr7_2:71514881-71514900 Msa1073870:intron 35.0%
TTGTTAACTACACAGTGCTT+GGG + chr7_2:71514882-71514901 Msa1073870:intron 35.0%
ACCTCACATTCTGAATGATA+AGG + chr7_2:71515041-71515060 Msa1073870:CDS 35.0%
TCCTTATCATTCAGAATGTG+AGG - chr7_2:71515045-71515064 None:intergenic 35.0%
! TTGTCCCCATTCTTTGTTTA+AGG + chr7_2:71515119-71515138 Msa1073870:CDS 35.0%
! TGTCCCCATTCTTTGTTTAA+GGG + chr7_2:71515120-71515139 Msa1073870:CDS 35.0%
AAACTCTGTCTGCTATTGTT+AGG + chr7_2:71515184-71515203 Msa1073870:CDS 35.0%
AGGTATTCTCCTTTCATCTA+TGG + chr7_2:71515283-71515302 Msa1073870:intron 35.0%
ATAACTGGTGTTCTTCTCAT+AGG - chr7_2:71515443-71515462 None:intergenic 35.0%
TATAGGCTTCATCACACTTT+GGG - chr7_2:71515649-71515668 None:intergenic 35.0%
TTATAGGCTTCATCACACTT+TGG - chr7_2:71515650-71515669 None:intergenic 35.0%
TATTGGAACTAGACTACTAG+AGG + chr7_2:71515685-71515704 Msa1073870:intron 35.0%
CATGAATAGATATAGAACGG+AGG - chr7_2:71515738-71515757 None:intergenic 35.0%
CTCCGTTCTATATCTATTCA+TGG + chr7_2:71515736-71515755 Msa1073870:intron 35.0%
!!! CTGTACTATACCCTTTTTTG+GGG + chr7_2:71515847-71515866 Msa1073870:intron 35.0%
! TTTGGTTCCTCAAAGGAAAA+GGG - chr7_2:71516176-71516195 None:intergenic 35.0%
AGACATTGAAGAAGCAATGA+TGG + chr7_2:71516296-71516315 Msa1073870:CDS 35.0%
TGATAAGGACTCTGCAAATT+GGG - chr7_2:71516403-71516422 None:intergenic 35.0%
AGATTCACCGATGAAGATTG+AGG - chr7_2:71509714-71509733 None:intergenic 40.0%
GATTAAGAGTTCGTTGGAAC+TGG - chr7_2:71509860-71509879 None:intergenic 40.0%
TTAATCTCTCTTCCTCGTAG+CGG + chr7_2:71509874-71509893 Msa1073870:CDS 40.0%
ACTTTGATATTTCCGCTACG+AGG - chr7_2:71509889-71509908 None:intergenic 40.0%
GCAAACCATAAAAACGCTTC+TGG + chr7_2:71510014-71510033 Msa1073870:CDS 40.0%
! AGGGTTTTACCTCTTTCTTC+AGG - chr7_2:71510050-71510069 None:intergenic 40.0%
! CACTACCTGAAGGTATGATT+TGG - chr7_2:71510205-71510224 None:intergenic 40.0%
ATGTATATGACTGAGCTACC+TGG + chr7_2:71510345-71510364 Msa1073870:CDS 40.0%
TGTATATGACTGAGCTACCT+GGG + chr7_2:71510346-71510365 Msa1073870:CDS 40.0%
TTTGCAGCATAATTCATCCC+AGG - chr7_2:71510366-71510385 None:intergenic 40.0%
CTTGAGAGATGTGTGACTAA+TGG + chr7_2:71510408-71510427 Msa1073870:CDS 40.0%
! GACACGGATTATTATCACAC+AGG - chr7_2:71510465-71510484 None:intergenic 40.0%
! TATTGATTGTCTGTTCGTGC+AGG + chr7_2:71510532-71510551 Msa1073870:intron 40.0%
TCACAAAGACTAGTATCCTG+GGG - chr7_2:71510781-71510800 None:intergenic 40.0%
! CTCTCCCTTTTCATTCTAAG+AGG + chr7_2:71510914-71510933 Msa1073870:intron 40.0%
! GTCTAGCTCAAACTAGATGA+AGG - chr7_2:71510985-71511004 None:intergenic 40.0%
CAATGCAATCTATCAACGGA+AGG + chr7_2:71511169-71511188 Msa1073870:CDS 40.0%
TGCAATGGTCAATCTCAGTA+AGG + chr7_2:71511298-71511317 Msa1073870:intron 40.0%
CGGAAGAGACTTCAAAATGT+TGG + chr7_2:71511731-71511750 Msa1073870:CDS 40.0%
! GCATTCGCTCTATTTTCTGT+TGG + chr7_2:71511753-71511772 Msa1073870:CDS 40.0%
! TTTGGGAGTTGCAACTTTTC+CGG + chr7_2:71512326-71512345 Msa1073870:intron 40.0%
! GGGTTTTTCATCAATAGCAC+AGG + chr7_2:71512381-71512400 Msa1073870:intron 40.0%
ATAGCACAGGTGGATACAAA+AGG + chr7_2:71512394-71512413 Msa1073870:CDS 40.0%
! CGTAAAGCATTATGCTTTCC+TGG + chr7_2:71512451-71512470 Msa1073870:CDS 40.0%
! AAAGCATTATGCTTTCCTGG+TGG + chr7_2:71512454-71512473 Msa1073870:CDS 40.0%
GGTGTAAAGGAATTCTGATG+AGG - chr7_2:71512559-71512578 None:intergenic 40.0%
CCCAATGCTTTGGTAAAAGT+TGG + chr7_2:71512670-71512689 Msa1073870:CDS 40.0%
GTAAAAGTTGGATCTTCACG+AGG + chr7_2:71512682-71512701 Msa1073870:CDS 40.0%
AGTTGTGATCTCTTGCACAA+TGG + chr7_2:71512854-71512873 Msa1073870:intron 40.0%
TTGTCTGTCATCATTTGCTC+TGG - chr7_2:71512935-71512954 None:intergenic 40.0%
!!! CAAAAGTTTTAAAGAGGGCC+TGG + chr7_2:71513019-71513038 Msa1073870:CDS 40.0%
GTTGAAGTCAAAGAGAGTGA+GGG + chr7_2:71513059-71513078 Msa1073870:CDS 40.0%
TTGAAGTCAAAGAGAGTGAG+GGG + chr7_2:71513060-71513079 Msa1073870:CDS 40.0%
TCGGAGCTTCTAAATGCATA+TGG - chr7_2:71513221-71513240 None:intergenic 40.0%
!!! GTTCAGTTGATGGCAGTTTT+AGG - chr7_2:71513248-71513267 None:intergenic 40.0%
ACATTCGAAAGGTAGAGATC+GGG - chr7_2:71513472-71513491 None:intergenic 40.0%
! AGGGTTTGGTTTACTACAGA+TGG + chr7_2:71513504-71513523 Msa1073870:intron 40.0%
!!! TTCGAAGTTTTGAACCTACC+CGG - chr7_2:71513750-71513769 None:intergenic 40.0%
TGAAATGTGCCAAAAGGTAG+TGG + chr7_2:71514179-71514198 Msa1073870:intron 40.0%
! AAGTATGGACCACTACCTTT+TGG - chr7_2:71514191-71514210 None:intergenic 40.0%
!! CTTTAATCTTGTTGGTTCCG+TGG + chr7_2:71514226-71514245 Msa1073870:intron 40.0%
!! GAAATTGGAGTGTTGGACAT+TGG + chr7_2:71514372-71514391 Msa1073870:intron 40.0%
GTTGGACATTGGATGAAAAC+TGG + chr7_2:71514383-71514402 Msa1073870:intron 40.0%
TTTCGACAAGGCAGATTTGT+TGG + chr7_2:71514934-71514953 Msa1073870:CDS 40.0%
!! AGGCAGATTTGTTGGTAAGA+TGG + chr7_2:71514942-71514961 Msa1073870:intron 40.0%
GGTGTTCTTCTCATAGGTAA+TGG - chr7_2:71515437-71515456 None:intergenic 40.0%
!! TGCATGGGAAGCATTTAAAG+TGG - chr7_2:71515487-71515506 None:intergenic 40.0%
AGCACACTTAGCATATGCAT+GGG - chr7_2:71515502-71515521 None:intergenic 40.0%
TAGCACACTTAGCATATGCA+TGG - chr7_2:71515503-71515522 None:intergenic 40.0%
GAGTTCACTACCCCAAAAAA+GGG - chr7_2:71515860-71515879 None:intergenic 40.0%
TGAGTTCACTACCCCAAAAA+AGG - chr7_2:71515861-71515880 None:intergenic 40.0%
! CTGTTTTCCCTTTTCCTTTG+AGG + chr7_2:71516166-71516185 Msa1073870:intron 40.0%
! GTTTGGTTCCTCAAAGGAAA+AGG - chr7_2:71516177-71516196 None:intergenic 40.0%
!! ATGAAACTTGTTAACCGGCA+AGG - chr7_2:71516199-71516218 None:intergenic 40.0%
! TGGCTGCAAAGAAAGGTATA+AGG + chr7_2:71516316-71516335 Msa1073870:CDS 40.0%
CTGATAAGGACTCTGCAAAT+TGG - chr7_2:71516404-71516423 None:intergenic 40.0%
TTCGTTGGAACTGGAATTGC+AGG - chr7_2:71509851-71509870 None:intergenic 45.0%
CGTAGAACATGAGTTCATGC+TGG + chr7_2:71510152-71510171 Msa1073870:intron 45.0%
!! CTTCTGAAATCCAGTTTGGC+TGG + chr7_2:71510570-71510589 Msa1073870:CDS 45.0%
TTTGGCTGGAGATTCAGGAA+AGG + chr7_2:71510584-71510603 Msa1073870:CDS 45.0%
ATCCTGGGGCTAAAAAGGTT+AGG - chr7_2:71510767-71510786 None:intergenic 45.0%
CTAGTATCCTGGGGCTAAAA+AGG - chr7_2:71510772-71510791 None:intergenic 45.0%
TCTAAGAGGCTAAGACCATC+CGG + chr7_2:71510928-71510947 Msa1073870:intron 45.0%
CTGCATATTCTGTGTCTGCA+GGG - chr7_2:71511130-71511149 None:intergenic 45.0%
TCTGCATATTCTGTGTCTGC+AGG - chr7_2:71511131-71511150 None:intergenic 45.0%
! TTGCATTGACAGCTGCAAGT+GGG - chr7_2:71511157-71511176 None:intergenic 45.0%
! ATTGCATTGACAGCTGCAAG+TGG - chr7_2:71511158-71511177 None:intergenic 45.0%
AATGTCGCTAGCACAAACAC+TGG - chr7_2:71511451-71511470 None:intergenic 45.0%
! GTTGATATCCTGCAGGGTTT+TGG + chr7_2:71511686-71511705 Msa1073870:intron 45.0%
ATATCTGACCAAAACCCTGC+AGG - chr7_2:71511697-71511716 None:intergenic 45.0%
TGGGGAGACAAAGAATCTGA+AGG + chr7_2:71511773-71511792 Msa1073870:CDS 45.0%
! TCTGTAGTGTTTCTGCAGTG+TGG - chr7_2:71512041-71512060 None:intergenic 45.0%
! AGCTTTTACAGGTAACCTGC+GGG - chr7_2:71512425-71512444 None:intergenic 45.0%
! CAGCTTTTACAGGTAACCTG+CGG - chr7_2:71512426-71512445 None:intergenic 45.0%
AATTCTGATGAGGCTGTGAG+GGG - chr7_2:71512549-71512568 None:intergenic 45.0%
GAATTCTGATGAGGCTGTGA+GGG - chr7_2:71512550-71512569 None:intergenic 45.0%
TGATCTCTTGCACAATGGAC+AGG + chr7_2:71512859-71512878 Msa1073870:intron 45.0%
! GTGTCATTGCAGCAGTTCTT+AGG - chr7_2:71512901-71512920 None:intergenic 45.0%
AAATGGTGCAGATTGTACCC+AGG + chr7_2:71512957-71512976 Msa1073870:CDS 45.0%
TGACTTCAACGAGGATGAAG+AGG - chr7_2:71513049-71513068 None:intergenic 45.0%
! CACTCTCTTTGACTTCAACG+AGG - chr7_2:71513058-71513077 None:intergenic 45.0%
CGTTGAAGTCAAAGAGAGTG+AGG + chr7_2:71513058-71513077 Msa1073870:CDS 45.0%
CTGATCGACAGTCAACAAAC+TGG - chr7_2:71513089-71513108 None:intergenic 45.0%
ACTGTCGATCAGATTCTAGC+TGG + chr7_2:71513097-71513116 Msa1073870:CDS 45.0%
! CTGTCGATCAGATTCTAGCT+GGG + chr7_2:71513098-71513117 Msa1073870:CDS 45.0%
! TGTCGATCAGATTCTAGCTG+GGG + chr7_2:71513099-71513118 Msa1073870:CDS 45.0%
!!! GATGGCAGTTTTAGGCTGAT+CGG - chr7_2:71513240-71513259 None:intergenic 45.0%
TAGGTGATTGAAGACCTAGG+TGG + chr7_2:71513638-71513657 Msa1073870:intron 45.0%
TCAACCACACATGTTGTCAC+AGG + chr7_2:71513683-71513702 Msa1073870:CDS 45.0%
TTGTCCTGTGACAACATGTG+TGG - chr7_2:71513690-71513709 None:intergenic 45.0%
TTCTGTACTGCTCTCTGTTC+CGG + chr7_2:71513728-71513747 Msa1073870:CDS 45.0%
CATCCACTAATCACGTTCCA+CGG - chr7_2:71514246-71514265 None:intergenic 45.0%
TGCATGCAGGTGTTAACAGA+TGG + chr7_2:71514458-71514477 Msa1073870:intron 45.0%
!! GCATTTTACCAAGTTGGGCA+TGG - chr7_2:71514690-71514709 None:intergenic 45.0%
TTAACTACACAGTGCTTGGG+TGG + chr7_2:71514885-71514904 Msa1073870:intron 45.0%
TCTGCTATTGTTAGGTCTGC+TGG + chr7_2:71515192-71515211 Msa1073870:CDS 45.0%
! TGCACCTTGGATGCATTTTC+TGG + chr7_2:71516066-71516085 Msa1073870:intron 45.0%
CACTCCAGAAAATGCATCCA+AGG - chr7_2:71516073-71516092 None:intergenic 45.0%
TTTGAGGAACCAAACCTTGC+CGG + chr7_2:71516182-71516201 Msa1073870:intron 45.0%
! ACTTGTTAACCGGCAAGGTT+TGG - chr7_2:71516194-71516213 None:intergenic 45.0%
GCAATGATGGCTGCAAAGAA+AGG + chr7_2:71516309-71516328 Msa1073870:CDS 45.0%
TAAGGACTTTCGACAGTGAG+TGG + chr7_2:71516334-71516353 Msa1073870:CDS 45.0%
TAAGGACTCTGCAAATTGGG+AGG - chr7_2:71516400-71516419 None:intergenic 45.0%
!! TATATTAATTAAAAAAAGAA+TGG + chr7_2:71515312-71515331 Msa1073870:intron 5.0%
!! TATAAAAATAAATAAATAAC+TGG - chr7_2:71515458-71515477 None:intergenic 5.0%
! GGAATTGCAGGTGAAAGTGC+TGG - chr7_2:71509839-71509858 None:intergenic 50.0%
ACCTTCAGGTAGTGCAACAC+TGG + chr7_2:71510211-71510230 Msa1073870:intron 50.0%
ACCAGTGTTGCACTACCTGA+AGG - chr7_2:71510215-71510234 None:intergenic 50.0%
TCCAGTTTGGCTGGAGATTC+AGG + chr7_2:71510579-71510598 Msa1073870:CDS 50.0%
TCCTGAATCTCCAGCCAAAC+TGG - chr7_2:71510583-71510602 None:intergenic 50.0%
!! AGCCTAACCTTTTTAGCCCC+AGG + chr7_2:71510762-71510781 Msa1073870:intron 50.0%
ACCAACACTGCATGCAACGA+TGG - chr7_2:71510839-71510858 None:intergenic 50.0%
AGACAGCAGATGGCATGAGT+AGG - chr7_2:71511588-71511607 None:intergenic 50.0%
! GTGTTTCTGCAGTGTGGTGT+TGG - chr7_2:71512035-71512054 None:intergenic 50.0%
! GGAGTTGCAACTTTTCCGGA+GGG + chr7_2:71512330-71512349 Msa1073870:intron 50.0%
ATACAAAAGGTAGAGCCCGC+AGG + chr7_2:71512407-71512426 Msa1073870:CDS 50.0%
ATCATGAGAGTCGAACCACC+AGG - chr7_2:71512472-71512491 None:intergenic 50.0%
GGAATTCTGATGAGGCTGTG+AGG - chr7_2:71512551-71512570 None:intergenic 50.0%
CGAGGACGTGGAAAACTCAA+TGG + chr7_2:71512700-71512719 Msa1073870:CDS 50.0%
! TTTTGTCTCCGAGGCTGGTA+GGG + chr7_2:71513122-71513141 Msa1073870:CDS 50.0%
TAGGGCCAATCCTTGTTCTG+CGG + chr7_2:71513140-71513159 Msa1073870:CDS 50.0%
GGATTCCGCAGAACAAGGAT+TGG - chr7_2:71513148-71513167 None:intergenic 50.0%
CAGAGGCAATAGTTCCACCT+AGG - chr7_2:71513655-71513674 None:intergenic 50.0%
GGTGGAACTATTGCCTCTGA+TGG + chr7_2:71513656-71513675 Msa1073870:CDS 50.0%
TCTGTACTGCTCTCTGTTCC+GGG + chr7_2:71513729-71513748 Msa1073870:CDS 50.0%
GTTCCGTGGAACGTGATTAG+TGG + chr7_2:71514240-71514259 Msa1073870:intron 50.0%
TGAAGTGTGTCCAGCTATCG+AGG + chr7_2:71514421-71514440 Msa1073870:intron 50.0%
GAAGTGTGTCCAGCTATCGA+GGG + chr7_2:71514422-71514441 Msa1073870:intron 50.0%
ATTCAACGCCATGCCCAACT+TGG + chr7_2:71514679-71514698 Msa1073870:intron 50.0%
! CTTGGGTGGTCTCATCGATT+TGG + chr7_2:71514899-71514918 Msa1073870:CDS 50.0%
GCTATTGTTAGGTCTGCTGG+TGG + chr7_2:71515195-71515214 Msa1073870:CDS 50.0%
! GGCAAGGTTTGGTTCCTCAA+AGG - chr7_2:71516183-71516202 None:intergenic 50.0%
CATGAGACAAGAGCTCGACA+TGG + chr7_2:71516371-71516390 Msa1073870:CDS 50.0%
!! GGTGAAAGTGCTGGCTTCGA+CGG - chr7_2:71509830-71509849 None:intergenic 55.0%
GCCATCGTTGCATGCAGTGT+TGG + chr7_2:71510835-71510854 Msa1073870:intron 55.0%
! GGGAGTTGCAACTTTTCCGG+AGG + chr7_2:71512329-71512348 Msa1073870:intron 55.0%
GTTGGATCTTCACGAGGACG+TGG + chr7_2:71512688-71512707 Msa1073870:CDS 55.0%
!! TAGCTGGGGTTTTGTCTCCG+AGG + chr7_2:71513113-71513132 Msa1073870:CDS 55.0%
! GTTTTGTCTCCGAGGCTGGT+AGG + chr7_2:71513121-71513140 Msa1073870:CDS 55.0%
TGAGGGGATTCCGCAGAACA+AGG - chr7_2:71513153-71513172 None:intergenic 55.0%
TACTGCTCTCTGTTCCGGGT+AGG + chr7_2:71513733-71513752 Msa1073870:intron 55.0%
CGAGGATGAAGAGGCTTCCC+AGG - chr7_2:71513040-71513059 None:intergenic 60.0%
!! TGGGGTTTTGTCTCCGAGGC+TGG + chr7_2:71513117-71513136 Msa1073870:CDS 60.0%
!! AGGATTGGCCCTACCAGCCT+CGG - chr7_2:71513133-71513152 None:intergenic 60.0%
TGTCCAGCTATCGAGGGACG+TGG + chr7_2:71514428-71514447 Msa1073870:intron 60.0%
GTCCAGCTATCGAGGGACGT+GGG + chr7_2:71514429-71514448 Msa1073870:intron 60.0%
CTATCGAGGGACGTGGGTGA+TGG + chr7_2:71514435-71514454 Msa1073870:intron 60.0%
! ACGTGGGTGATGGTGCATGC+AGG + chr7_2:71514445-71514464 Msa1073870:intron 60.0%
CACCCACGTCCCTCGATAGC+TGG - chr7_2:71514434-71514453 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 71509682 71516431 71509682 ID=Msa1073870;Name=Msa1073870
chr7_2 mRNA 71509682 71516431 71509682 ID=Msa1073870-mRNA-1;Parent=Msa1073870;Name=Msa1073870-mRNA-1;_AED=0.13;_eAED=0.13;_QI=7|0.84|0.57|1|1|1|14|0|650
chr7_2 exon 71509682 71509725 71509682 ID=Msa1073870-mRNA-1:exon:16242;Parent=Msa1073870-mRNA-1
chr7_2 exon 71509812 71509913 71509812 ID=Msa1073870-mRNA-1:exon:16243;Parent=Msa1073870-mRNA-1
chr7_2 exon 71510006 71510059 71510006 ID=Msa1073870-mRNA-1:exon:16244;Parent=Msa1073870-mRNA-1
chr7_2 exon 71510157 71510218 71510157 ID=Msa1073870-mRNA-1:exon:16245;Parent=Msa1073870-mRNA-1
chr7_2 exon 71510333 71510430 71510333 ID=Msa1073870-mRNA-1:exon:16246;Parent=Msa1073870-mRNA-1
chr7_2 exon 71510554 71510605 71510554 ID=Msa1073870-mRNA-1:exon:16247;Parent=Msa1073870-mRNA-1
chr7_2 exon 71511098 71511190 71511098 ID=Msa1073870-mRNA-1:exon:16248;Parent=Msa1073870-mRNA-1
chr7_2 exon 71511701 71511811 71511701 ID=Msa1073870-mRNA-1:exon:16249;Parent=Msa1073870-mRNA-1
chr7_2 exon 71512382 71512721 71512382 ID=Msa1073870-mRNA-1:exon:16250;Parent=Msa1073870-mRNA-1
chr7_2 exon 71512881 71513329 71512881 ID=Msa1073870-mRNA-1:exon:16251;Parent=Msa1073870-mRNA-1
chr7_2 exon 71513641 71513750 71513641 ID=Msa1073870-mRNA-1:exon:16252;Parent=Msa1073870-mRNA-1
chr7_2 exon 71514897 71514955 71514897 ID=Msa1073870-mRNA-1:exon:16253;Parent=Msa1073870-mRNA-1
chr7_2 exon 71515034 71515221 71515034 ID=Msa1073870-mRNA-1:exon:16254;Parent=Msa1073870-mRNA-1
chr7_2 exon 71516234 71516431 71516234 ID=Msa1073870-mRNA-1:exon:16255;Parent=Msa1073870-mRNA-1
chr7_2 five_prime_UTR 71509682 71509688 71509682 ID=Msa1073870-mRNA-1:five_prime_utr;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71509689 71509725 71509689 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71509812 71509913 71509812 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71510006 71510059 71510006 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71510157 71510218 71510157 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71510333 71510430 71510333 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71510554 71510605 71510554 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71511098 71511190 71511098 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71511701 71511811 71511701 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71512382 71512721 71512382 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71512881 71513329 71512881 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71513641 71513750 71513641 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71514897 71514955 71514897 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71515034 71515221 71515034 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
chr7_2 CDS 71516234 71516431 71516234 ID=Msa1073870-mRNA-1:cds;Parent=Msa1073870-mRNA-1
Gene Sequence

>Msa1073870

ATGGCGCCAAAAAGAAAACATTCCTCAATCTTCATCGGTAACTGCGAAATTACCGTCGAAGCCAGCACTTTCACCTGCAATTCCAGTTCCAACGAACTCTTAATCTCTCTTCCTCGTAGCGGAAATATCAAAGTATCTGATGTTTCTGCAAACCATAAAAACGCTTCTGGGAATTTCACTCCTGAAGAAAGAGAACATGAGTTCATGCTGGTTAATCCTAAAGATGATGATGATATTACCAAATCATACCTTCAGGAGGTATTACAGATGTATATGACTGAGCTACCTGGGATGAATTATGCTGCAAATACCGGAAAGCAATCAAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGAACACTACTTCTGAAATCCAGTTTGGCTGGAGATTCAGGAAAGGTTATAGCTGCAATTACTTATCAAATCGTCCCTGCAGACACAGAATATGCAGAGATCCCACTTGCAGCTGTCAATGCAATCTATCAACGGAAGGGTTTTGGTCAGATATTGTTTCTAGAGCTCCGGAAGAGACTTCAAAATGTTGGCATTCGCTCTATTTTCTGTTGGGGAGACAAAGAATCTGAAGGATTTTGGCTTAAACAGGGTTTTTCATCAATAGCACAGGTGGATACAAAAGGTAGAGCCCGCAGGTTACCTGTAAAAGCTGATATTCGTAAAGCATTATGCTTTCCTGGTGGTTCGACTCTCATGATTCTCCATCTAAAGAAGGAATTGTTTGATGACAATGCTAACTCTGGGAAGTGTCTCCCCTCACAGCCTCATCAGAATTCCTTTACACCTGCAATTGTTGAAAATGAGCAGCTTGAATTCTCAGATGAACTACTCATTAACTTGAAATCTTCCCATAGAACAGACACAAGTCAAAGTAAACCCAATGCTTTGGTAAAAGTTGGATCTTCACGAGGACGTGGAAAACTCAATGGATTTGACAGTCAGAATCCTAAGAACTGCTGCAATGACACTGTTGATTTTGCCAGAGCAAATGATGACAGACAAGCAAATGGTGCAGATTGTACCCAGGATGAAAATTATGCTAATATAGCGCATTGTTCTCAATCTACAAAAGTTTTAAAGAGGGCCTGGGAAGCCTCTTCATCCTCGTTGAAGTCAAAGAGAGTGAGGGGAAGCCAGTTTGTTGACTGTCGATCAGATTCTAGCTGGGGTTTTGTCTCCGAGGCTGGTAGGGCCAATCCTTGTTCTGCGGAATCCCCTCATTGTGATACTTCAATTACAAAGAACTCTGAAAAATGTATTGGAGACCATATGCATTTAGAAGCTCCGATCAGCCTAAAACTGCCATCAACTGAACAATGCTTTAGAATCATGTTGATGAACATCACTGATGACGCTAAGAAAACACAGCTTACAAAGGTGATTGAAGACCTAGGTGGAACTATTGCCTCTGATGGAAGCTCAACCACACATGTTGTCACAGGACAAGTGAGAAAAACTCTGAATTTCTGTACTGCTCTCTGTTCCGGTGCTTGGGTGGTCTCATCGATTTGGTTAAAAGAAAGTTTTCGACAAGGCAGATTTGTTGATGAATTACCTCACATTCTGAATGATAAGGATTATTTGTTGAAGTATAAATCGGATTTAAGAAGTGCAGTTTTACGAGCAAAAGCTTGTCCCCATTCTTTGTTTAAGGGTTATAATATATGTATTGCAGCTAATGTTCAAACTTCTGCAAAAACTCTGTCTGCTATTGTTAGGTCTGCTGGTGGTAATGTTATTAGTGGACTAAGAAAAGTAAATGAAGCATCAACAACAATCTTTGTGACTCGCGAAGAAGACATTGAAGAAGCAATGATGGCTGCAAAGAAAGGTATAAGGACTTTCGACAGTGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTCGACATGGAAGCCTCCCAATTTGCAGAGTCCTTATCAGATTGTTAA

Protein sequence

>Msa1073870

MAPKRKHSSIFIGNCEITVEASTFTCNSSSNELLISLPRSGNIKVSDVSANHKNASGNFTPEEREHEFMLVNPKDDDDITKSYLQEVLQMYMTELPGMNYAANTGKQSKFLERCVTNGKYRTLLLKSSLAGDSGKVIAAITYQIVPADTEYAEIPLAAVNAIYQRKGFGQILFLELRKRLQNVGIRSIFCWGDKESEGFWLKQGFSSIAQVDTKGRARRLPVKADIRKALCFPGGSTLMILHLKKELFDDNANSGKCLPSQPHQNSFTPAIVENEQLEFSDELLINLKSSHRTDTSQSKPNALVKVGSSRGRGKLNGFDSQNPKNCCNDTVDFARANDDRQANGADCTQDENYANIAHCSQSTKVLKRAWEASSSSLKSKRVRGSQFVDCRSDSSWGFVSEAGRANPCSAESPHCDTSITKNSEKCIGDHMHLEAPISLKLPSTEQCFRIMLMNITDDAKKTQLTKVIEDLGGTIASDGSSTTHVVTGQVRKTLNFCTALCSGAWVVSSIWLKESFRQGRFVDELPHILNDKDYLLKYKSDLRSAVLRAKACPHSLFKGYNICIAANVQTSAKTLSAIVRSAGGNVISGLRKVNEASTTIFVTREEDIEEAMMAAKKGIRTFDSEWFMNCVMRQELDMEASQFAESLSDC*