Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074050 | XP_003625105.2 | 99.562 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 0.0 | 943 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074050 | sp|Q8S0G4|GPDH1_ORYSJ | 86.623 | 456 | 60 | 1 | 1 | 456 | 1 | 455 | 0.0 | 828 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074050 | G7KSM3 | 99.562 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 0.0 | 943 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1074050 | Msa1114530 | 0.922021 | 1.688021e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074050 | MtrunA17_Chr7g0257111 | 99.562 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 0.0 | 943 |
| Msa1074050 | MtrunA17_Chr4g0020581 | 85.556 | 450 | 65 | 0 | 8 | 457 | 8 | 457 | 0.0 | 807 |
| Msa1074050 | MtrunA17_Chr6g0458181 | 26.859 | 417 | 215 | 18 | 13 | 413 | 14 | 356 | 4.85e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1074050 | AT2G41540.3 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| Msa1074050 | AT2G41540.1 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| Msa1074050 | AT2G41540.4 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| Msa1074050 | AT2G41540.2 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| Msa1074050 | AT3G07690.2 | 80.909 | 440 | 84 | 0 | 18 | 457 | 16 | 455 | 0.0 | 759 |
| Msa1074050 | AT3G07690.1 | 79.111 | 450 | 84 | 1 | 18 | 457 | 16 | 465 | 0.0 | 753 |
| Msa1074050 | AT5G40610.1 | 26.521 | 411 | 228 | 18 | 22 | 419 | 39 | 388 | 8.96e-16 | 79.3 |
Find 104 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATGGTGGGAAGTATTT+TGG | 0.125449 | 7_2:+71756293 | Msa1074050:exon |
| TTAGGATAAGAATAAGATTT+TGG | 0.174143 | 7_2:-71756076 | None:intergenic |
| AAGAAGTGTTGCTCCAATTT+TGG | 0.187072 | 7_2:-71759601 | None:intergenic |
| CACTGCATTGTGGCCAAAAT+TGG | 0.195031 | 7_2:+71759588 | Msa1074050:three_prime_UTR |
| TAGATTTCTGAAGCAATATT+TGG | 0.204065 | 7_2:-71757581 | None:intergenic |
| CCAATACACACAATTCTTAA+TGG | 0.226759 | 7_2:-71756402 | None:intergenic |
| TTCTACAGGCCTTCACTTCT+TGG | 0.227692 | 7_2:+71759366 | Msa1074050:CDS |
| CTTCAGGATGCAATACATTT+AGG | 0.253998 | 7_2:-71758841 | None:intergenic |
| GACAACCACATTTCATTGTA+TGG | 0.268525 | 7_2:+71757675 | Msa1074050:CDS |
| GATGAGTTTAGGAGACTAAT+TGG | 0.269554 | 7_2:+71756363 | Msa1074050:CDS |
| TTCGAAAATCTCACGAGTTT+CGG | 0.269563 | 7_2:-71756787 | None:intergenic |
| ATTTATTCTTGTTACTTGTT+AGG | 0.270482 | 7_2:-71756094 | None:intergenic |
| ACTTATGTGACATTGTTAAA+AGG | 0.274708 | 7_2:+71758501 | Msa1074050:CDS |
| GTACTAGGAAGAACCAAATA+TGG | 0.305967 | 7_2:-71756242 | None:intergenic |
| GATGCTGATATTGTTGTTAA+TGG | 0.309247 | 7_2:+71756753 | Msa1074050:CDS |
| TCTCCGGCTCTTCAGTTAAC+AGG | 0.316025 | 7_2:-71758452 | None:intergenic |
| AGGAGAAGCTTGATGAGTTT+AGG | 0.317427 | 7_2:+71756352 | Msa1074050:CDS |
| TTGTAGAGTGTCTTCAAGAT+AGG | 0.319634 | 7_2:-71758896 | None:intergenic |
| CTAATTTGCAAGAAGCTGTT+TGG | 0.326140 | 7_2:+71756730 | Msa1074050:CDS |
| ACAAAGTACAAATCAGAATA+TGG | 0.327356 | 7_2:+71756487 | Msa1074050:CDS |
| GCAATACATTTAGGCTTGAT+TGG | 0.338071 | 7_2:-71758832 | None:intergenic |
| TCATCTCAGAATCATAATAA+TGG | 0.350904 | 7_2:+71756324 | Msa1074050:CDS |
| CAAGTAACAAGAATAAATTT+TGG | 0.355376 | 7_2:+71756099 | Msa1074050:five_prime_UTR |
| TAATTTGCAAGAAGCTGTTT+GGG | 0.364920 | 7_2:+71756731 | Msa1074050:CDS |
| GCCGATGAAATTCTTAAAGA+TGG | 0.376531 | 7_2:+71756657 | Msa1074050:CDS |
| TTAGACAGAGAGATTATAAC+AGG | 0.380435 | 7_2:-71756846 | None:intergenic |
| CTAATGCTGTCACCCATGTC+CGG | 0.388974 | 7_2:-71758570 | None:intergenic |
| CACAATGTTAGTATATTAAT+AGG | 0.397077 | 7_2:+71756152 | Msa1074050:five_prime_UTR |
| TCGAAGAGATTAGTAAGTAT+TGG | 0.404360 | 7_2:+71756805 | Msa1074050:CDS |
| GAAGAGCCGGAGAAACTTGC+TGG | 0.404712 | 7_2:+71758462 | Msa1074050:CDS |
| ATCTCACGAGTTTCGGTTGA+AGG | 0.407631 | 7_2:-71756780 | None:intergenic |
| ATGGAGAACATACTTTATCT+TGG | 0.408674 | 7_2:+71757554 | Msa1074050:CDS |
| TGTCTAAGAAACTTTGCTAA+AGG | 0.417206 | 7_2:-71757656 | None:intergenic |
| TAGTGGCAAAGGAATGATTC+AGG | 0.421338 | 7_2:+71758590 | Msa1074050:CDS |
| TGGATGGAAACATGGTATAT+AGG | 0.422940 | 7_2:+71759425 | Msa1074050:three_prime_UTR |
| AAATGTGAATGTAAGTTGTT+AGG | 0.427959 | 7_2:-71756206 | None:intergenic |
| GTGTATTGGAGCAGGTGCTT+GGG | 0.429380 | 7_2:+71756416 | Msa1074050:CDS |
| GAATCATAATAATGGATTAG+AGG | 0.429843 | 7_2:+71756332 | Msa1074050:CDS |
| TGCAATTCTAAAAGCTTTGA+GGG | 0.435708 | 7_2:+71759290 | Msa1074050:CDS |
| ATGCAATTCTAAAAGCTTTG+AGG | 0.436163 | 7_2:+71759289 | Msa1074050:CDS |
| CCTTGTCACCCATGAGGTCA+TGG | 0.440322 | 7_2:+71757709 | Msa1074050:CDS |
| AAGATAGGGCAAAGTTCAAC+AGG | 0.440622 | 7_2:-71758881 | None:intergenic |
| GGAGTTACAATATGAGGAAC+AGG | 0.446394 | 7_2:-71756891 | None:intergenic |
| ACAACTTTCAAAGGACAAAC+AGG | 0.452124 | 7_2:-71756705 | None:intergenic |
| CCATTAAGAATTGTGTGTAT+TGG | 0.455692 | 7_2:+71756402 | Msa1074050:CDS |
| TGTGTATTGGAGCAGGTGCT+TGG | 0.457732 | 7_2:+71756415 | Msa1074050:CDS |
| TATGCCAATGCTCGAATTTG+TGG | 0.461408 | 7_2:+71757614 | Msa1074050:CDS |
| GAATTTGTGGAGCTGAGAAA+TGG | 0.462642 | 7_2:+71757627 | Msa1074050:CDS |
| TTGAAGCAAGACTTGGTGAT+AGG | 0.462713 | 7_2:+71756625 | Msa1074050:CDS |
| AGACTAATTGGTAAAACTAA+TGG | 0.462975 | 7_2:+71756375 | Msa1074050:CDS |
| TTTGCTAGTAGCACTCTCAT+TGG | 0.465676 | 7_2:-71758382 | None:intergenic |
| TTCGACAGCTGGAGTGCCTA+TGG | 0.466991 | 7_2:+71757535 | Msa1074050:intron |
| CACAAAGTCATGCTTTCTAC+AGG | 0.470610 | 7_2:+71759352 | Msa1074050:CDS |
| ACCATCTTTAAGAATTTCAT+CGG | 0.471494 | 7_2:-71756658 | None:intergenic |
| GACATGGGTGACAGCATTAG+TGG | 0.484154 | 7_2:+71758573 | Msa1074050:CDS |
| TCAATCCACCCATGACCTCA+TGG | 0.485187 | 7_2:-71757718 | None:intergenic |
| TGTAGAGTGTCTTCAAGATA+GGG | 0.485301 | 7_2:-71758895 | None:intergenic |
| TCTACAAAATATTGATATCC+AGG | 0.488839 | 7_2:+71758912 | Msa1074050:CDS |
| ATCAGAATATGGAGAAGAGC+AGG | 0.496538 | 7_2:+71756498 | Msa1074050:CDS |
| TATAGGAAACAATAGTCAAA+GGG | 0.498205 | 7_2:+71759442 | Msa1074050:three_prime_UTR |
| TAGTAGCACTCTCATTGGTA+AGG | 0.499488 | 7_2:-71758377 | None:intergenic |
| TAAAGGTATTGAAGCTGCAT+TGG | 0.499510 | 7_2:+71756866 | Msa1074050:CDS |
| GTTATAATCTCTCTGTCTAA+AGG | 0.502564 | 7_2:+71756849 | Msa1074050:CDS |
| TTTGTGGGAGTTACAATATG+AGG | 0.502737 | 7_2:-71756897 | None:intergenic |
| ACAACCACATTTCATTGTAT+GGG | 0.504294 | 7_2:+71757676 | Msa1074050:CDS |
| AGCTCCACAAATTCGAGCAT+TGG | 0.510159 | 7_2:-71757618 | None:intergenic |
| GGGTGAACTAAGCCCGGACA+TGG | 0.515195 | 7_2:+71758557 | Msa1074050:CDS |
| AAGAAAATATGCAGCAGCAT+TGG | 0.517402 | 7_2:-71756050 | None:intergenic |
| AATGGTCCAGCAAGTTTCTC+CGG | 0.519002 | 7_2:-71758468 | None:intergenic |
| AGCTAAGGGTGAACTAAGCC+CGG | 0.520175 | 7_2:+71758551 | Msa1074050:CDS |
| AATGTCTATGCAATTGGAGC+TGG | 0.522412 | 7_2:+71757743 | Msa1074050:CDS |
| AAATGAATCAAAGAAGTACT+AGG | 0.522560 | 7_2:-71756257 | None:intergenic |
| AGAGATTAGTAAGTATTGGA+AGG | 0.527494 | 7_2:+71756809 | Msa1074050:CDS |
| TAATGCTGTCACCCATGTCC+GGG | 0.527903 | 7_2:-71758569 | None:intergenic |
| TACTAGGAAGAACCAAATAT+GGG | 0.535712 | 7_2:-71756241 | None:intergenic |
| GAGAACATACTTTATCTTGG+TGG | 0.535772 | 7_2:+71757557 | Msa1074050:CDS |
| AAAGGTCGTAACGCGTGGTA+CGG | 0.542056 | 7_2:+71758519 | Msa1074050:CDS |
| AAATTAGTAACAACTTTCAA+AGG | 0.547608 | 7_2:-71756714 | None:intergenic |
| CACTGTTGTCCAAGAAGTGA+AGG | 0.548452 | 7_2:-71759375 | None:intergenic |
| GTACGGTCAGATGTTAGCTA+AGG | 0.556151 | 7_2:+71758536 | Msa1074050:CDS |
| AGAATTGTGTGTATTGGAGC+AGG | 0.556506 | 7_2:+71756408 | Msa1074050:CDS |
| CAATCCACCCATGACCTCAT+GGG | 0.560138 | 7_2:-71757717 | None:intergenic |
| ATATAGGAAACAATAGTCAA+AGG | 0.564598 | 7_2:+71759441 | Msa1074050:three_prime_UTR |
| AAATATGTTGAAGCAAGACT+TGG | 0.566622 | 7_2:+71756618 | Msa1074050:CDS |
| CTTGTCACCCATGAGGTCAT+GGG | 0.568933 | 7_2:+71757710 | Msa1074050:CDS |
| TCACCTGTTAACTGAAGAGC+CGG | 0.570267 | 7_2:+71758449 | Msa1074050:CDS |
| CCATGACCTCATGGGTGACA+AGG | 0.571840 | 7_2:-71757709 | None:intergenic |
| AACAAGTGTGGATGGAAACA+TGG | 0.574767 | 7_2:+71759417 | Msa1074050:three_prime_UTR |
| GTCACCCATGAGGTCATGGG+TGG | 0.579637 | 7_2:+71757713 | Msa1074050:CDS |
| GGTGACAGCATTAGTGGCAA+AGG | 0.581226 | 7_2:+71758579 | Msa1074050:CDS |
| AGATAAAGTATGTTCTCCAT+AGG | 0.586722 | 7_2:-71757551 | None:intergenic |
| TGTATTGGAGCAGGTGCTTG+GGG | 0.597611 | 7_2:+71756417 | Msa1074050:CDS |
| GCAATTGCAATGCGTTCTCG+TGG | 0.608213 | 7_2:-71759330 | None:intergenic |
| AGTAGCACTCTCATTGGTAA+GGG | 0.611334 | 7_2:-71758376 | None:intergenic |
| ACATAAGTATCAGCTAGTAA+TGG | 0.625233 | 7_2:-71758486 | None:intergenic |
| TACGGTCAGATGTTAGCTAA+GGG | 0.629674 | 7_2:+71758537 | Msa1074050:CDS |
| TTTGTGGAGCTGAGAAATGG+AGG | 0.630464 | 7_2:+71757630 | Msa1074050:CDS |
| TATGCAGCAGCATTGGAATG+TGG | 0.633034 | 7_2:-71756043 | None:intergenic |
| TGTTAAAAGGTCGTAACGCG+TGG | 0.645736 | 7_2:+71758514 | Msa1074050:CDS |
| CTACTAGGGAGTGTCTGCAG+TGG | 0.650197 | 7_2:+71758787 | Msa1074050:intron |
| GGTGAACTAAGCCCGGACAT+GGG | 0.660223 | 7_2:+71758558 | Msa1074050:CDS |
| TGCTTCAGAAATCTACAACA+AGG | 0.686795 | 7_2:+71757589 | Msa1074050:CDS |
| TTGTCCCATACAATGAAATG+TGG | 0.713044 | 7_2:-71757680 | None:intergenic |
| CAGTGACCTTGTCACCCATG+AGG | 0.715312 | 7_2:+71757703 | Msa1074050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATTTGAATAATTGAAAA+TGG | + | chr7_2:71756986-71757005 | Msa1074050:intron | 15.0% |
| !!! | AAATATGTTACCAAAAATTT+TGG | + | chr7_2:71757213-71757232 | Msa1074050:intron | 15.0% |
| !!! | TTTTTAAATTGAATTCGTTA+CGG | - | chr7_2:71757256-71757275 | None:intergenic | 15.0% |
| !!! | TATCTAAATATTTTTCTATG+AGG | - | chr7_2:71758129-71758148 | None:intergenic | 15.0% |
| !! | ATAAAGTAAATGTTAAAACA+TGG | - | chr7_2:71758297-71758316 | None:intergenic | 15.0% |
| !!! | AAACTTTTTGTTTTTTGAAA+CGG | - | chr7_2:71758643-71758662 | None:intergenic | 15.0% |
| !! | ATATTTCAATGATATACAAT+AGG | + | chr7_2:71759047-71759066 | Msa1074050:intron | 15.0% |
| !! | CCAAATGTATTATTATTATT+TGG | - | chr7_2:71759182-71759201 | None:intergenic | 15.0% |
| !! | CCAAATAATAATAATACATT+TGG | + | chr7_2:71759179-71759198 | Msa1074050:intron | 15.0% |
| !!! | TAGGATAAGAATAAGATTTT+GGG | - | chr7_2:71756078-71756097 | None:intergenic | 20.0% |
| !!! | TTAGGATAAGAATAAGATTT+TGG | - | chr7_2:71756079-71756098 | None:intergenic | 20.0% |
| !!! | ATTTATTCTTGTTACTTGTT+AGG | - | chr7_2:71756097-71756116 | None:intergenic | 20.0% |
| !!! | CAAGTAACAAGAATAAATTT+TGG | + | chr7_2:71756099-71756118 | Msa1074050:five_prime_UTR | 20.0% |
| !! | CACAATGTTAGTATATTAAT+AGG | + | chr7_2:71756152-71756171 | Msa1074050:five_prime_UTR | 20.0% |
| !!! | TTTCTTTTAGTTTTTGATCA+TGG | + | chr7_2:71756278-71756297 | Msa1074050:exon | 20.0% |
| !! | AAATTAGTAACAACTTTCAA+AGG | - | chr7_2:71756717-71756736 | None:intergenic | 20.0% |
| !! | ATTTGAATAATTGAAAATGG+TGG | + | chr7_2:71756989-71757008 | Msa1074050:intron | 20.0% |
| !! | TAATTCATTAACCACTAATT+TGG | - | chr7_2:71757030-71757049 | None:intergenic | 20.0% |
| !! | CGATGATTAATGAATATAAT+AGG | - | chr7_2:71757078-71757097 | None:intergenic | 20.0% |
| !!! | AAAAAGAACTCCAAAATTTT+TGG | - | chr7_2:71757226-71757245 | None:intergenic | 20.0% |
| !! | AGTATGAAAATGAAAACAAT+AGG | - | chr7_2:71757281-71757300 | None:intergenic | 20.0% |
| !!! | TAAAATTTTGCGTTGAAATA+AGG | - | chr7_2:71757476-71757495 | None:intergenic | 20.0% |
| !!! | ATTAACTTGAAATTTGAGAA+AGG | + | chr7_2:71758237-71758256 | Msa1074050:intron | 20.0% |
| !! | TAAATGTTAAAACATGGAAA+TGG | - | chr7_2:71758291-71758310 | None:intergenic | 20.0% |
| !! | TTCATTGTAATGATATAATC+AGG | + | chr7_2:71758342-71758361 | Msa1074050:intron | 20.0% |
| !!! | ACTTATATGTAATTTTCTTG+AGG | + | chr7_2:71758670-71758689 | Msa1074050:intron | 20.0% |
| !! | TACTCTTGTTAATTATTGTT+AGG | - | chr7_2:71758948-71758967 | None:intergenic | 20.0% |
| !!! | ACATTTAACCTAACTTATTT+TGG | - | chr7_2:71759103-71759122 | None:intergenic | 20.0% |
| !! | TCAAAAGATAACAAGTTTAA+GGG | - | chr7_2:71759147-71759166 | None:intergenic | 20.0% |
| ! | GTTGAGTTATCAAAAATTGA+AGG | + | chr7_2:71756124-71756143 | Msa1074050:five_prime_UTR | 25.0% |
| ! | AAATGTGAATGTAAGTTGTT+AGG | - | chr7_2:71756209-71756228 | None:intergenic | 25.0% |
| !!! | AAATGAATCAAAGAAGTACT+AGG | - | chr7_2:71756260-71756279 | None:intergenic | 25.0% |
| !!! | TTTTAGTTTTTGATCATGGT+GGG | + | chr7_2:71756282-71756301 | Msa1074050:exon | 25.0% |
| ! | TCATCTCAGAATCATAATAA+TGG | + | chr7_2:71756324-71756343 | Msa1074050:CDS | 25.0% |
| !!! | GAATCATAATAATGGATTAG+AGG | + | chr7_2:71756332-71756351 | Msa1074050:CDS | 25.0% |
| ! | AGACTAATTGGTAAAACTAA+TGG | + | chr7_2:71756375-71756394 | Msa1074050:CDS | 25.0% |
| ! | ACAAAGTACAAATCAGAATA+TGG | + | chr7_2:71756487-71756506 | Msa1074050:CDS | 25.0% |
| !! | ACCATCTTTAAGAATTTCAT+CGG | - | chr7_2:71756661-71756680 | None:intergenic | 25.0% |
| ! | CTAAGTACAAATTCATTTCT+TGG | - | chr7_2:71757384-71757403 | None:intergenic | 25.0% |
| ! | AGAGTAACTGCTAAAATATA+AGG | - | chr7_2:71757411-71757430 | None:intergenic | 25.0% |
| !!! | TAGATTTCTGAAGCAATATT+TGG | - | chr7_2:71757584-71757603 | None:intergenic | 25.0% |
| ! | TTGAAAAATGTCTATGCAAT+TGG | + | chr7_2:71757737-71757756 | Msa1074050:CDS | 25.0% |
| !! | CCTAAGTTGGAATAATATAA+AGG | - | chr7_2:71757975-71757994 | None:intergenic | 25.0% |
| ! | CCTTTATATTATTCCAACTT+AGG | + | chr7_2:71757972-71757991 | Msa1074050:intron | 25.0% |
| ! | AAGTTATGTAAATCCTAAGT+TGG | - | chr7_2:71757988-71758007 | None:intergenic | 25.0% |
| ! | TGCAACTGTAAATTGAATTA+AGG | + | chr7_2:71758172-71758191 | Msa1074050:intron | 25.0% |
| ! | AAATGGCATTATAACATTTG+AGG | - | chr7_2:71758274-71758293 | None:intergenic | 25.0% |
| ! | ATATCATTACAATGAAAAGC+AGG | - | chr7_2:71758338-71758357 | None:intergenic | 25.0% |
| ! | TGTAATGATATAATCAGGAA+TGG | + | chr7_2:71758347-71758366 | Msa1074050:intron | 25.0% |
| ! | ACTTATGTGACATTGTTAAA+AGG | + | chr7_2:71758501-71758520 | Msa1074050:CDS | 25.0% |
| ! | TCTACAAAATATTGATATCC+AGG | + | chr7_2:71758912-71758931 | Msa1074050:CDS | 25.0% |
| ! | TTACTCATACTTAACAACAA+AGG | - | chr7_2:71758984-71759003 | None:intergenic | 25.0% |
| ! | TGTTAAGTATGAGTAATTAG+AGG | + | chr7_2:71758988-71759007 | Msa1074050:intron | 25.0% |
| ! | TTCTAATGCCAAAATAAGTT+AGG | + | chr7_2:71759092-71759111 | Msa1074050:intron | 25.0% |
| ! | CTCAAAAGATAACAAGTTTA+AGG | - | chr7_2:71759148-71759167 | None:intergenic | 25.0% |
| ! | ATATAGGAAACAATAGTCAA+AGG | + | chr7_2:71759441-71759460 | Msa1074050:three_prime_UTR | 25.0% |
| ! | TATAGGAAACAATAGTCAAA+GGG | + | chr7_2:71759442-71759461 | Msa1074050:three_prime_UTR | 25.0% |
| ! | TCAAGTTTTCATCCCATATT+TGG | + | chr7_2:71756229-71756248 | Msa1074050:five_prime_UTR | 30.0% |
| TACTAGGAAGAACCAAATAT+GGG | - | chr7_2:71756244-71756263 | None:intergenic | 30.0% | |
| !!! | CTTTTAGTTTTTGATCATGG+TGG | + | chr7_2:71756281-71756300 | Msa1074050:exon | 30.0% |
| CCAATACACACAATTCTTAA+TGG | - | chr7_2:71756405-71756424 | None:intergenic | 30.0% | |
| CCATTAAGAATTGTGTGTAT+TGG | + | chr7_2:71756402-71756421 | Msa1074050:CDS | 30.0% | |
| !!! | CAAGAGAAGATGTTTTAAGA+AGG | + | chr7_2:71756571-71756590 | Msa1074050:CDS | 30.0% |
| AAATATGTTGAAGCAAGACT+TGG | + | chr7_2:71756618-71756637 | Msa1074050:CDS | 30.0% | |
| ! | TAATTTGCAAGAAGCTGTTT+GGG | + | chr7_2:71756731-71756750 | Msa1074050:CDS | 30.0% |
| ! | GATGCTGATATTGTTGTTAA+TGG | + | chr7_2:71756753-71756772 | Msa1074050:CDS | 30.0% |
| TCGAAGAGATTAGTAAGTAT+TGG | + | chr7_2:71756805-71756824 | Msa1074050:CDS | 30.0% | |
| !! | AGAGATTAGTAAGTATTGGA+AGG | + | chr7_2:71756809-71756828 | Msa1074050:CDS | 30.0% |
| TTAGACAGAGAGATTATAAC+AGG | - | chr7_2:71756849-71756868 | None:intergenic | 30.0% | |
| GTTATAATCTCTCTGTCTAA+AGG | + | chr7_2:71756849-71756868 | Msa1074050:CDS | 30.0% | |
| !! | GCTTGATGAATCATTTTTGT+GGG | - | chr7_2:71756915-71756934 | None:intergenic | 30.0% |
| !! | TGCTTGATGAATCATTTTTG+TGG | - | chr7_2:71756916-71756935 | None:intergenic | 30.0% |
| AGTGGTTAATGAATTAACGT+CGG | + | chr7_2:71757034-71757053 | Msa1074050:intron | 30.0% | |
| ! | GTTGAATTGTGATAGTTCTA+TGG | + | chr7_2:71757322-71757341 | Msa1074050:intron | 30.0% |
| AGATAAAGTATGTTCTCCAT+AGG | - | chr7_2:71757554-71757573 | None:intergenic | 30.0% | |
| ATGGAGAACATACTTTATCT+TGG | + | chr7_2:71757554-71757573 | Msa1074050:CDS | 30.0% | |
| TGTCTAAGAAACTTTGCTAA+AGG | - | chr7_2:71757659-71757678 | None:intergenic | 30.0% | |
| ACAACCACATTTCATTGTAT+GGG | + | chr7_2:71757676-71757695 | Msa1074050:CDS | 30.0% | |
| !! | ACTGCTCTAATATTTTTGCA+GGG | - | chr7_2:71757852-71757871 | None:intergenic | 30.0% |
| !! | TACTGCTCTAATATTTTTGC+AGG | - | chr7_2:71757853-71757872 | None:intergenic | 30.0% |
| ACATAAGTATCAGCTAGTAA+TGG | - | chr7_2:71758489-71758508 | None:intergenic | 30.0% | |
| ! | TGGTGTATGTTTGATTTCTT+AGG | + | chr7_2:71759253-71759272 | Msa1074050:intron | 30.0% |
| ! | GGTGTATGTTTGATTTCTTA+GGG | + | chr7_2:71759254-71759273 | Msa1074050:intron | 30.0% |
| ! | ATGCAATTCTAAAAGCTTTG+AGG | + | chr7_2:71759289-71759308 | Msa1074050:CDS | 30.0% |
| ! | TGCAATTCTAAAAGCTTTGA+GGG | + | chr7_2:71759290-71759309 | Msa1074050:CDS | 30.0% |
| AAGAAAATATGCAGCAGCAT+TGG | - | chr7_2:71756053-71756072 | None:intergenic | 35.0% | |
| GTACTAGGAAGAACCAAATA+TGG | - | chr7_2:71756245-71756264 | None:intergenic | 35.0% | |
| !!! | ATCATGGTGGGAAGTATTTT+GGG | + | chr7_2:71756294-71756313 | Msa1074050:exon | 35.0% |
| GATGAGTTTAGGAGACTAAT+TGG | + | chr7_2:71756363-71756382 | Msa1074050:CDS | 35.0% | |
| ! | GCACTTTTACAAGACAGTTA+TGG | + | chr7_2:71756453-71756472 | Msa1074050:CDS | 35.0% |
| GCCGATGAAATTCTTAAAGA+TGG | + | chr7_2:71756657-71756676 | Msa1074050:CDS | 35.0% | |
| ACAACTTTCAAAGGACAAAC+AGG | - | chr7_2:71756708-71756727 | None:intergenic | 35.0% | |
| ! | CTAATTTGCAAGAAGCTGTT+TGG | + | chr7_2:71756730-71756749 | Msa1074050:CDS | 35.0% |
| TTCGAAAATCTCACGAGTTT+CGG | - | chr7_2:71756790-71756809 | None:intergenic | 35.0% | |
| !! | TAAAGGTATTGAAGCTGCAT+TGG | + | chr7_2:71756866-71756885 | Msa1074050:CDS | 35.0% |
| TTTGTGGGAGTTACAATATG+AGG | - | chr7_2:71756900-71756919 | None:intergenic | 35.0% | |
| TACTTGTTCAATCCTTGCAA+AGG | - | chr7_2:71756968-71756987 | None:intergenic | 35.0% | |
| ATGCAAAGAGTGAAGAATGA+GGG | - | chr7_2:71757509-71757528 | None:intergenic | 35.0% | |
| AATGCAAAGAGTGAAGAATG+AGG | - | chr7_2:71757510-71757529 | None:intergenic | 35.0% | |
| GAGAACATACTTTATCTTGG+TGG | + | chr7_2:71757557-71757576 | Msa1074050:CDS | 35.0% | |
| TGCTTCAGAAATCTACAACA+AGG | + | chr7_2:71757589-71757608 | Msa1074050:CDS | 35.0% | |
| GACAACCACATTTCATTGTA+TGG | + | chr7_2:71757675-71757694 | Msa1074050:CDS | 35.0% | |
| TTGTCCCATACAATGAAATG+TGG | - | chr7_2:71757683-71757702 | None:intergenic | 35.0% | |
| ! | CGCTTTATGTCTTCATGTTT+TGG | + | chr7_2:71757788-71757807 | Msa1074050:intron | 35.0% |
| !! | CTGCTCTAATATTTTTGCAG+GGG | - | chr7_2:71757851-71757870 | None:intergenic | 35.0% |
| ! | ACATGCCATTTATCTCTACT+AGG | + | chr7_2:71758772-71758791 | Msa1074050:intron | 35.0% |
| ! | CATGCCATTTATCTCTACTA+GGG | + | chr7_2:71758773-71758792 | Msa1074050:intron | 35.0% |
| GCAATACATTTAGGCTTGAT+TGG | - | chr7_2:71758835-71758854 | None:intergenic | 35.0% | |
| CTTCAGGATGCAATACATTT+AGG | - | chr7_2:71758844-71758863 | None:intergenic | 35.0% | |
| !!! | GCAACATGCTTTTTTTCTTC+AGG | - | chr7_2:71758860-71758879 | None:intergenic | 35.0% |
| ! | TGTAGAGTGTCTTCAAGATA+GGG | - | chr7_2:71758898-71758917 | None:intergenic | 35.0% |
| ! | TTGTAGAGTGTCTTCAAGAT+AGG | - | chr7_2:71758899-71758918 | None:intergenic | 35.0% |
| TTGTTAGGAGATTGATTACC+TGG | - | chr7_2:71758933-71758952 | None:intergenic | 35.0% | |
| TAATTAGAGGATGTGAAGTG+AGG | + | chr7_2:71759001-71759020 | Msa1074050:intron | 35.0% | |
| AATTAGAGGATGTGAAGTGA+GGG | + | chr7_2:71759002-71759021 | Msa1074050:intron | 35.0% | |
| AAATAAGTTTCCCATGCTTC+TGG | + | chr7_2:71759233-71759252 | Msa1074050:intron | 35.0% | |
| TGGATGGAAACATGGTATAT+AGG | + | chr7_2:71759425-71759444 | Msa1074050:three_prime_UTR | 35.0% | |
| !!! | CCACAATGCAGTGTTTTTTT+TGG | - | chr7_2:71759581-71759600 | None:intergenic | 35.0% |
| CCAAAAAAAACACTGCATTG+TGG | + | chr7_2:71759578-71759597 | Msa1074050:three_prime_UTR | 35.0% | |
| !!! | AAGAAGTGTTGCTCCAATTT+TGG | - | chr7_2:71759604-71759623 | None:intergenic | 35.0% |
| !!! | GATCATGGTGGGAAGTATTT+TGG | + | chr7_2:71756293-71756312 | Msa1074050:exon | 40.0% |
| !!! | GTGGGAAGTATTTTGGGAAA+TGG | + | chr7_2:71756300-71756319 | Msa1074050:CDS | 40.0% |
| AGGAGAAGCTTGATGAGTTT+AGG | + | chr7_2:71756352-71756371 | Msa1074050:CDS | 40.0% | |
| AGAATTGTGTGTATTGGAGC+AGG | + | chr7_2:71756408-71756427 | Msa1074050:CDS | 40.0% | |
| ATCAGAATATGGAGAAGAGC+AGG | + | chr7_2:71756498-71756517 | Msa1074050:CDS | 40.0% | |
| !! | TTGAAGCAAGACTTGGTGAT+AGG | + | chr7_2:71756625-71756644 | Msa1074050:CDS | 40.0% |
| GGAGTTACAATATGAGGAAC+AGG | - | chr7_2:71756894-71756913 | None:intergenic | 40.0% | |
| CTTGCAAAGGCAAACAGAAA+TGG | - | chr7_2:71756955-71756974 | None:intergenic | 40.0% | |
| CATTTCTGTTTGCCTTTGCA+AGG | + | chr7_2:71756953-71756972 | Msa1074050:intron | 40.0% | |
| GGTTAATGAATTAACGTCGG+TGG | + | chr7_2:71757037-71757056 | Msa1074050:intron | 40.0% | |
| ! | CTTTCGCGACAACTTTTAAG+TGG | - | chr7_2:71757138-71757157 | None:intergenic | 40.0% |
| TCAGATATCAGATGCGCTAT+TGG | - | chr7_2:71757183-71757202 | None:intergenic | 40.0% | |
| AGTGAAGAATGAGGGATGAA+AGG | - | chr7_2:71757501-71757520 | None:intergenic | 40.0% | |
| TATGCCAATGCTCGAATTTG+TGG | + | chr7_2:71757614-71757633 | Msa1074050:CDS | 40.0% | |
| GAATTTGTGGAGCTGAGAAA+TGG | + | chr7_2:71757627-71757646 | Msa1074050:CDS | 40.0% | |
| AATGTCTATGCAATTGGAGC+TGG | + | chr7_2:71757743-71757762 | Msa1074050:CDS | 40.0% | |
| GGAGACAGTTTAACGATAAG+TGG | - | chr7_2:71758045-71758064 | None:intergenic | 40.0% | |
| ! | GGACAGAGTTCTAACTTCAA+CGG | - | chr7_2:71758066-71758085 | None:intergenic | 40.0% |
| GTTTAGCCTAGTAGTCTCAA+GGG | - | chr7_2:71758087-71758106 | None:intergenic | 40.0% | |
| AGTTTAGCCTAGTAGTCTCA+AGG | - | chr7_2:71758088-71758107 | None:intergenic | 40.0% | |
| CTTGTCTCTATAGCATGTGA+AGG | - | chr7_2:71758209-71758228 | None:intergenic | 40.0% | |
| CACATGCTATAGAGACAAGA+AGG | + | chr7_2:71758210-71758229 | Msa1074050:intron | 40.0% | |
| AGTAGCACTCTCATTGGTAA+GGG | - | chr7_2:71758379-71758398 | None:intergenic | 40.0% | |
| TAGTAGCACTCTCATTGGTA+AGG | - | chr7_2:71758380-71758399 | None:intergenic | 40.0% | |
| TTTGCTAGTAGCACTCTCAT+TGG | - | chr7_2:71758385-71758404 | None:intergenic | 40.0% | |
| TACGGTCAGATGTTAGCTAA+GGG | + | chr7_2:71758537-71758556 | Msa1074050:CDS | 40.0% | |
| TAGTGGCAAAGGAATGATTC+AGG | + | chr7_2:71758590-71758609 | Msa1074050:CDS | 40.0% | |
| CACTCCCTAGTAGAGATAAA+TGG | - | chr7_2:71758780-71758799 | None:intergenic | 40.0% | |
| AAGATAGGGCAAAGTTCAAC+AGG | - | chr7_2:71758884-71758903 | None:intergenic | 40.0% | |
| ! | CAAACATACACCAGAAGCAT+GGG | - | chr7_2:71759246-71759265 | None:intergenic | 40.0% |
| TCAAACATACACCAGAAGCA+TGG | - | chr7_2:71759247-71759266 | None:intergenic | 40.0% | |
| CACAAAGTCATGCTTTCTAC+AGG | + | chr7_2:71759352-71759371 | Msa1074050:CDS | 40.0% | |
| ! | CAACAGTGATTGTTTTCCCT+TGG | + | chr7_2:71759390-71759409 | Msa1074050:exon | 40.0% |
| !!! | TCCACACTTGTTTTTGCCAA+GGG | - | chr7_2:71759409-71759428 | None:intergenic | 40.0% |
| !!! | ATCCACACTTGTTTTTGCCA+AGG | - | chr7_2:71759410-71759429 | None:intergenic | 40.0% |
| TTGGCAAAAACAAGTGTGGA+TGG | + | chr7_2:71759409-71759428 | Msa1074050:three_prime_UTR | 40.0% | |
| AACAAGTGTGGATGGAAACA+TGG | + | chr7_2:71759417-71759436 | Msa1074050:three_prime_UTR | 40.0% | |
| ! | TATGCAGCAGCATTGGAATG+TGG | - | chr7_2:71756046-71756065 | None:intergenic | 45.0% |
| ATCTCACGAGTTTCGGTTGA+AGG | - | chr7_2:71756783-71756802 | None:intergenic | 45.0% | |
| TCACGTCACGTCCAAATTAG+TGG | + | chr7_2:71757016-71757035 | Msa1074050:intron | 45.0% | |
| TGCATTGCAAATTCGACAGC+TGG | + | chr7_2:71757524-71757543 | Msa1074050:intron | 45.0% | |
| AGCTCCACAAATTCGAGCAT+TGG | - | chr7_2:71757621-71757640 | None:intergenic | 45.0% | |
| TTTGTGGAGCTGAGAAATGG+AGG | + | chr7_2:71757630-71757649 | Msa1074050:CDS | 45.0% | |
| TCACCTGTTAACTGAAGAGC+CGG | + | chr7_2:71758449-71758468 | Msa1074050:CDS | 45.0% | |
| AATGGTCCAGCAAGTTTCTC+CGG | - | chr7_2:71758471-71758490 | None:intergenic | 45.0% | |
| TGTTAAAAGGTCGTAACGCG+TGG | + | chr7_2:71758514-71758533 | Msa1074050:CDS | 45.0% | |
| GTACGGTCAGATGTTAGCTA+AGG | + | chr7_2:71758536-71758555 | Msa1074050:CDS | 45.0% | |
| TTCTACAGGCCTTCACTTCT+TGG | + | chr7_2:71759366-71759385 | Msa1074050:CDS | 45.0% | |
| CACTGTTGTCCAAGAAGTGA+AGG | - | chr7_2:71759378-71759397 | None:intergenic | 45.0% | |
| TCCCTTGGCAAAAACAAGTG+TGG | + | chr7_2:71759405-71759424 | Msa1074050:three_prime_UTR | 45.0% | |
| CACTGCATTGTGGCCAAAAT+TGG | + | chr7_2:71759588-71759607 | Msa1074050:three_prime_UTR | 45.0% | |
| TGTGTATTGGAGCAGGTGCT+TGG | + | chr7_2:71756415-71756434 | Msa1074050:CDS | 50.0% | |
| GTGTATTGGAGCAGGTGCTT+GGG | + | chr7_2:71756416-71756435 | Msa1074050:CDS | 50.0% | |
| TGTATTGGAGCAGGTGCTTG+GGG | + | chr7_2:71756417-71756436 | Msa1074050:CDS | 50.0% | |
| CTTGTCACCCATGAGGTCAT+GGG | + | chr7_2:71757710-71757729 | Msa1074050:CDS | 50.0% | |
| CAATCCACCCATGACCTCAT+GGG | - | chr7_2:71757720-71757739 | None:intergenic | 50.0% | |
| TCAATCCACCCATGACCTCA+TGG | - | chr7_2:71757721-71757740 | None:intergenic | 50.0% | |
| TAGCCTGAGACAGGCACAAT+CGG | - | chr7_2:71757936-71757955 | None:intergenic | 50.0% | |
| GTGGAAAAATCGCTCGAGCA+GGG | - | chr7_2:71758026-71758045 | None:intergenic | 50.0% | |
| AGTGGAAAAATCGCTCGAGC+AGG | - | chr7_2:71758027-71758046 | None:intergenic | 50.0% | |
| CTCTGTCCCTTGAGACTACT+AGG | + | chr7_2:71758078-71758097 | Msa1074050:intron | 50.0% | |
| TCTCCGGCTCTTCAGTTAAC+AGG | - | chr7_2:71758455-71758474 | None:intergenic | 50.0% | |
| AAAGGTCGTAACGCGTGGTA+CGG | + | chr7_2:71758519-71758538 | Msa1074050:CDS | 50.0% | |
| AGCTAAGGGTGAACTAAGCC+CGG | + | chr7_2:71758551-71758570 | Msa1074050:CDS | 50.0% | |
| TAATGCTGTCACCCATGTCC+GGG | - | chr7_2:71758572-71758591 | None:intergenic | 50.0% | |
| CTAATGCTGTCACCCATGTC+CGG | - | chr7_2:71758573-71758592 | None:intergenic | 50.0% | |
| GACATGGGTGACAGCATTAG+TGG | + | chr7_2:71758573-71758592 | Msa1074050:CDS | 50.0% | |
| GGTGACAGCATTAGTGGCAA+AGG | + | chr7_2:71758579-71758598 | Msa1074050:CDS | 50.0% | |
| GCAATTGCAATGCGTTCTCG+TGG | - | chr7_2:71759333-71759352 | None:intergenic | 50.0% | |
| ! | TTCGACAGCTGGAGTGCCTA+TGG | + | chr7_2:71757535-71757554 | Msa1074050:intron | 55.0% |
| CAGTGACCTTGTCACCCATG+AGG | + | chr7_2:71757703-71757722 | Msa1074050:CDS | 55.0% | |
| CCATGACCTCATGGGTGACA+AGG | - | chr7_2:71757712-71757731 | None:intergenic | 55.0% | |
| CCTTGTCACCCATGAGGTCA+TGG | + | chr7_2:71757709-71757728 | Msa1074050:CDS | 55.0% | |
| CAACCGATTGTGCCTGTCTC+AGG | + | chr7_2:71757930-71757949 | Msa1074050:intron | 55.0% | |
| GAAGAGCCGGAGAAACTTGC+TGG | + | chr7_2:71758462-71758481 | Msa1074050:CDS | 55.0% | |
| GGTGAACTAAGCCCGGACAT+GGG | + | chr7_2:71758558-71758577 | Msa1074050:CDS | 55.0% | |
| !! | CTACTAGGGAGTGTCTGCAG+TGG | + | chr7_2:71758787-71758806 | Msa1074050:intron | 55.0% |
| GTCACCCATGAGGTCATGGG+TGG | + | chr7_2:71757713-71757732 | Msa1074050:CDS | 60.0% | |
| GCCTGTCTCAGGCTACAGTG+CGG | + | chr7_2:71757941-71757960 | Msa1074050:intron | 60.0% | |
| GGGTGAACTAAGCCCGGACA+TGG | + | chr7_2:71758557-71758576 | Msa1074050:CDS | 60.0% | |
| GCCGCACTGTAGCCTGAGAC+AGG | - | chr7_2:71757945-71757964 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 71756033 | 71759655 | 71756033 | ID=Msa1074050;Name=Msa1074050 |
| chr7_2 | mRNA | 71756033 | 71759655 | 71756033 | ID=Msa1074050-mRNA-1;Parent=Msa1074050;Name=Msa1074050-mRNA-1;_AED=0.08;_eAED=0.08;_QI=264|1|1|1|1|1|5|257|457 |
| chr7_2 | exon | 71756033 | 71756936 | 71756033 | ID=Msa1074050-mRNA-1:exon:16316;Parent=Msa1074050-mRNA-1 |
| chr7_2 | exon | 71757543 | 71757764 | 71757543 | ID=Msa1074050-mRNA-1:exon:16317;Parent=Msa1074050-mRNA-1 |
| chr7_2 | exon | 71758364 | 71758611 | 71758364 | ID=Msa1074050-mRNA-1:exon:16318;Parent=Msa1074050-mRNA-1 |
| chr7_2 | exon | 71758794 | 71758933 | 71758794 | ID=Msa1074050-mRNA-1:exon:16319;Parent=Msa1074050-mRNA-1 |
| chr7_2 | exon | 71759275 | 71759655 | 71759275 | ID=Msa1074050-mRNA-1:exon:16320;Parent=Msa1074050-mRNA-1 |
| chr7_2 | five_prime_UTR | 71756033 | 71756296 | 71756033 | ID=Msa1074050-mRNA-1:five_prime_utr;Parent=Msa1074050-mRNA-1 |
| chr7_2 | CDS | 71756297 | 71756936 | 71756297 | ID=Msa1074050-mRNA-1:cds;Parent=Msa1074050-mRNA-1 |
| chr7_2 | CDS | 71757543 | 71757764 | 71757543 | ID=Msa1074050-mRNA-1:cds;Parent=Msa1074050-mRNA-1 |
| chr7_2 | CDS | 71758364 | 71758611 | 71758364 | ID=Msa1074050-mRNA-1:cds;Parent=Msa1074050-mRNA-1 |
| chr7_2 | CDS | 71758794 | 71758933 | 71758794 | ID=Msa1074050-mRNA-1:cds;Parent=Msa1074050-mRNA-1 |
| chr7_2 | CDS | 71759275 | 71759398 | 71759275 | ID=Msa1074050-mRNA-1:cds;Parent=Msa1074050-mRNA-1 |
| chr7_2 | three_prime_UTR | 71759399 | 71759655 | 71759399 | ID=Msa1074050-mRNA-1:three_prime_utr;Parent=Msa1074050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
