Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114530 | XP_003625105.2 | 99.562 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 0.0 | 943 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114530 | sp|Q8S0G4|GPDH1_ORYSJ | 86.623 | 456 | 60 | 1 | 1 | 456 | 1 | 455 | 0.0 | 828 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114530 | G7KSM3 | 99.562 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 0.0 | 943 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1074050 | Msa1114530 | 0.922021 | 1.688021e-88 | -8.615850e-47 |
| Msa1114530 | Msa1159760 | 0.844691 | 6.461240e-59 | -8.615850e-47 |
| Msa0571480 | Msa1114530 | 0.811195 | 7.903677e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114530 | MtrunA17_Chr7g0257111 | 99.562 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 0.0 | 943 |
| Msa1114530 | MtrunA17_Chr4g0020581 | 85.556 | 450 | 65 | 0 | 8 | 457 | 8 | 457 | 0.0 | 807 |
| Msa1114530 | MtrunA17_Chr6g0458181 | 26.859 | 417 | 215 | 18 | 13 | 413 | 14 | 356 | 4.85e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114530 | AT2G41540.3 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| Msa1114530 | AT2G41540.1 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| Msa1114530 | AT2G41540.4 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| Msa1114530 | AT2G41540.2 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| Msa1114530 | AT3G07690.2 | 80.909 | 440 | 84 | 0 | 18 | 457 | 16 | 455 | 0.0 | 759 |
| Msa1114530 | AT3G07690.1 | 79.111 | 450 | 84 | 1 | 18 | 457 | 16 | 465 | 0.0 | 753 |
| Msa1114530 | AT5G40610.1 | 26.521 | 411 | 228 | 18 | 22 | 419 | 39 | 388 | 8.96e-16 | 79.3 |
Find 102 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATGGTGGGAAGTATTT+TGG | 0.125449 | 7_3:+61375181 | Msa1114530:exon |
| TTAGGATAAGAATAAGATTT+TGG | 0.174143 | 7_3:-61374964 | None:intergenic |
| AAGAAGTGTTGCTCCAATTT+TGG | 0.187072 | 7_3:-61378489 | None:intergenic |
| CACTGCATTGTGGCCAAAAT+TGG | 0.195031 | 7_3:+61378476 | Msa1114530:three_prime_UTR |
| TAGATTTCTGAAGCAATATT+TGG | 0.204065 | 7_3:-61376472 | None:intergenic |
| CCAATACACACAATTCTTAA+TGG | 0.226759 | 7_3:-61375290 | None:intergenic |
| TTCTACAGGCCTTCACTTCT+TGG | 0.227692 | 7_3:+61378254 | Msa1114530:CDS |
| CTTCAGGATGCAATACATTT+AGG | 0.253998 | 7_3:-61377732 | None:intergenic |
| GACAACCACATTTCATTGTA+TGG | 0.268525 | 7_3:+61376566 | Msa1114530:CDS |
| GATGAGTTTAGGAGACTAAT+TGG | 0.269554 | 7_3:+61375251 | Msa1114530:CDS |
| TTCGAAAATCTCACGAGTTT+CGG | 0.269563 | 7_3:-61375675 | None:intergenic |
| ATTTATTCTTGTTACTTGTT+AGG | 0.270482 | 7_3:-61374982 | None:intergenic |
| ACTTATGTGACATTGTTAAA+AGG | 0.274708 | 7_3:+61377392 | Msa1114530:CDS |
| GTACTAGGAAGAACCAAATA+TGG | 0.305967 | 7_3:-61375130 | None:intergenic |
| GATGCTGATATTGTTGTTAA+TGG | 0.309247 | 7_3:+61375641 | Msa1114530:CDS |
| TCTCCGGCTCTTCAGTTAAC+AGG | 0.316025 | 7_3:-61377343 | None:intergenic |
| AGGAGAAGCTTGATGAGTTT+AGG | 0.317427 | 7_3:+61375240 | Msa1114530:CDS |
| TTGTAGAGTGTCTTCAAGAT+AGG | 0.319634 | 7_3:-61377787 | None:intergenic |
| CTAATTTGCAAGAAGCTGTT+TGG | 0.326140 | 7_3:+61375618 | Msa1114530:CDS |
| ACAAAGTACAAATCAGAATA+TGG | 0.327356 | 7_3:+61375375 | Msa1114530:CDS |
| GCAATACATTTAGGCTTGAT+TGG | 0.338071 | 7_3:-61377723 | None:intergenic |
| TCATCTCAGAATCATAATAA+TGG | 0.350904 | 7_3:+61375212 | Msa1114530:CDS |
| CAAGTAACAAGAATAAATTT+TGG | 0.355376 | 7_3:+61374987 | Msa1114530:five_prime_UTR |
| TAATTTGCAAGAAGCTGTTT+GGG | 0.364920 | 7_3:+61375619 | Msa1114530:CDS |
| GCCGATGAAATTCTTAAAGA+TGG | 0.376531 | 7_3:+61375545 | Msa1114530:CDS |
| TTAGACAGAGAGATTATAAC+AGG | 0.380435 | 7_3:-61375734 | None:intergenic |
| CTAATGCTGTCACCCATGTC+CGG | 0.388974 | 7_3:-61377461 | None:intergenic |
| CACAATGTTAGTATATTAAT+AGG | 0.397077 | 7_3:+61375040 | Msa1114530:five_prime_UTR |
| GAAGAGCCGGAGAAACTTGC+TGG | 0.404712 | 7_3:+61377353 | Msa1114530:CDS |
| ATCTCACGAGTTTCGGTTGA+AGG | 0.407631 | 7_3:-61375668 | None:intergenic |
| ATGGAGAACATACTTTATCT+TGG | 0.408674 | 7_3:+61376445 | Msa1114530:CDS |
| TGTCTAAGAAACTTTGCTAA+AGG | 0.417206 | 7_3:-61376547 | None:intergenic |
| TAGTGGCAAAGGAATGATTC+AGG | 0.421338 | 7_3:+61377481 | Msa1114530:CDS |
| AAATGTGAATGTAAGTTGTT+AGG | 0.427959 | 7_3:-61375094 | None:intergenic |
| GTGTATTGGAGCAGGTGCTT+GGG | 0.429380 | 7_3:+61375304 | Msa1114530:CDS |
| GAATCATAATAATGGATTAG+AGG | 0.429843 | 7_3:+61375220 | Msa1114530:CDS |
| TGCAATTCTAAAAGCTTTGA+GGG | 0.435708 | 7_3:+61378178 | Msa1114530:CDS |
| ATGCAATTCTAAAAGCTTTG+AGG | 0.436163 | 7_3:+61378177 | Msa1114530:CDS |
| AAGATAGGGCAAAGTTCAAC+AGG | 0.440622 | 7_3:-61377772 | None:intergenic |
| GGAGTTACAATATGAGGAAC+AGG | 0.446394 | 7_3:-61375779 | None:intergenic |
| ACAACTTTCAAAGGACAAAC+AGG | 0.452124 | 7_3:-61375593 | None:intergenic |
| CCATTAAGAATTGTGTGTAT+TGG | 0.455692 | 7_3:+61375290 | Msa1114530:CDS |
| TGTGTATTGGAGCAGGTGCT+TGG | 0.457732 | 7_3:+61375303 | Msa1114530:CDS |
| TCGAAGAGATTAGCAAGTAT+TGG | 0.460412 | 7_3:+61375693 | Msa1114530:CDS |
| TATGCCAATGCTCGAATTTG+TGG | 0.461408 | 7_3:+61376505 | Msa1114530:CDS |
| GAATTTGTGGAGCTGAGAAA+TGG | 0.462642 | 7_3:+61376518 | Msa1114530:CDS |
| TTGAAGCAAGACTTGGTGAT+AGG | 0.462713 | 7_3:+61375513 | Msa1114530:CDS |
| AGACTAATTGGTAAAACTAA+TGG | 0.462975 | 7_3:+61375263 | Msa1114530:CDS |
| TTTGCTAGTAGCACTCTCAT+TGG | 0.465676 | 7_3:-61377273 | None:intergenic |
| TTCGACAGCTGGAGTGCCTA+TGG | 0.466991 | 7_3:+61376426 | Msa1114530:intron |
| CACAAAGTCATGCTTTCTAC+AGG | 0.470610 | 7_3:+61378240 | Msa1114530:CDS |
| ACCATCTTTAAGAATTTCAT+CGG | 0.471494 | 7_3:-61375546 | None:intergenic |
| GACATGGGTGACAGCATTAG+TGG | 0.484154 | 7_3:+61377464 | Msa1114530:CDS |
| TGTAGAGTGTCTTCAAGATA+GGG | 0.485301 | 7_3:-61377786 | None:intergenic |
| TCTACAAAATATTGATATCC+AGG | 0.488839 | 7_3:+61377803 | Msa1114530:CDS |
| ATCAGAATATGGAGAAGAGC+AGG | 0.496538 | 7_3:+61375386 | Msa1114530:CDS |
| TAGTAGCACTCTCATTGGTA+AGG | 0.499488 | 7_3:-61377268 | None:intergenic |
| TAAAGGTATTGAAGCTGCAT+TGG | 0.499510 | 7_3:+61375754 | Msa1114530:CDS |
| GTTATAATCTCTCTGTCTAA+AGG | 0.502564 | 7_3:+61375737 | Msa1114530:CDS |
| TTTGTGGGAGTTACAATATG+AGG | 0.502737 | 7_3:-61375785 | None:intergenic |
| ACAACCACATTTCATTGTAT+GGG | 0.504294 | 7_3:+61376567 | Msa1114530:CDS |
| AGCTCCACAAATTCGAGCAT+TGG | 0.510159 | 7_3:-61376509 | None:intergenic |
| TGTAGGAAACAATAGTCAAA+GGG | 0.513882 | 7_3:+61378330 | Msa1114530:three_prime_UTR |
| GGGTGAACTAAGCCCGGACA+TGG | 0.515195 | 7_3:+61377448 | Msa1114530:CDS |
| AAGAAAATATGCAGCAGCAT+TGG | 0.517402 | 7_3:-61374938 | None:intergenic |
| AATGGTCCAGCAAGTTTCTC+CGG | 0.519002 | 7_3:-61377359 | None:intergenic |
| AGCTAAGGGTGAACTAAGCC+CGG | 0.520175 | 7_3:+61377442 | Msa1114530:CDS |
| AATGTCTATGCAATTGGAGC+TGG | 0.522412 | 7_3:+61376634 | Msa1114530:CDS |
| AAATGAATCAAAGAAGTACT+AGG | 0.522560 | 7_3:-61375145 | None:intergenic |
| TAATGCTGTCACCCATGTCC+GGG | 0.527903 | 7_3:-61377460 | None:intergenic |
| CCTTGTCACACATGAGGTCA+TGG | 0.530388 | 7_3:+61376600 | Msa1114530:CDS |
| TACTAGGAAGAACCAAATAT+GGG | 0.535712 | 7_3:-61375129 | None:intergenic |
| GAGAACATACTTTATCTTGG+TGG | 0.535772 | 7_3:+61376448 | Msa1114530:CDS |
| AAAGGTCGTAACGCGTGGTA+CGG | 0.542056 | 7_3:+61377410 | Msa1114530:CDS |
| AAATTAGTAACAACTTTCAA+AGG | 0.547608 | 7_3:-61375602 | None:intergenic |
| CACTGTTGTCCAAGAAGTGA+AGG | 0.548452 | 7_3:-61378263 | None:intergenic |
| ATGTAGGAAACAATAGTCAA+AGG | 0.553814 | 7_3:+61378329 | Msa1114530:three_prime_UTR |
| GTACGGTCAGATGTTAGCTA+AGG | 0.556151 | 7_3:+61377427 | Msa1114530:CDS |
| AGAATTGTGTGTATTGGAGC+AGG | 0.556506 | 7_3:+61375296 | Msa1114530:CDS |
| AAATATGTTGAAGCAAGACT+TGG | 0.566622 | 7_3:+61375506 | Msa1114530:CDS |
| TCACCTGTTAACTGAAGAGC+CGG | 0.570267 | 7_3:+61377340 | Msa1114530:CDS |
| TGGATGGAAACATGGTATGT+AGG | 0.574172 | 7_3:+61378313 | Msa1114530:three_prime_UTR |
| AACAAGTGTGGATGGAAACA+TGG | 0.574767 | 7_3:+61378305 | Msa1114530:three_prime_UTR |
| GGTGACAGCATTAGTGGCAA+AGG | 0.581226 | 7_3:+61377470 | Msa1114530:CDS |
| AGAGATTAGCAAGTATTGGA+AGG | 0.583545 | 7_3:+61375697 | Msa1114530:CDS |
| AGATAAAGTATGTTCTCCAT+AGG | 0.586722 | 7_3:-61376442 | None:intergenic |
| TGTATTGGAGCAGGTGCTTG+GGG | 0.597611 | 7_3:+61375305 | Msa1114530:CDS |
| GCAATTGCAATGCGTTCTCG+TGG | 0.608213 | 7_3:-61378218 | None:intergenic |
| AGTAGCACTCTCATTGGTAA+GGG | 0.611334 | 7_3:-61377267 | None:intergenic |
| ACATAAGTATCAGCTAGTAA+TGG | 0.625233 | 7_3:-61377377 | None:intergenic |
| TACGGTCAGATGTTAGCTAA+GGG | 0.629674 | 7_3:+61377428 | Msa1114530:CDS |
| TTTGTGGAGCTGAGAAATGG+AGG | 0.630464 | 7_3:+61376521 | Msa1114530:CDS |
| TATGCAGCAGCATTGGAATG+TGG | 0.633034 | 7_3:-61374931 | None:intergenic |
| GTCACACATGAGGTCATGGG+TGG | 0.637923 | 7_3:+61376604 | Msa1114530:CDS |
| CCATGACCTCATGTGTGACA+AGG | 0.642037 | 7_3:-61376600 | None:intergenic |
| TGTTAAAAGGTCGTAACGCG+TGG | 0.645736 | 7_3:+61377405 | Msa1114530:CDS |
| CTACTAGGGAGTGTCTGCAG+TGG | 0.650197 | 7_3:+61377678 | Msa1114530:intron |
| CTTGTCACACATGAGGTCAT+GGG | 0.650326 | 7_3:+61376601 | Msa1114530:CDS |
| GGTGAACTAAGCCCGGACAT+GGG | 0.660223 | 7_3:+61377449 | Msa1114530:CDS |
| TGCTTCAGAAATCTACAACA+AGG | 0.686795 | 7_3:+61376480 | Msa1114530:CDS |
| TAGTGACCTTGTCACACATG+AGG | 0.687205 | 7_3:+61376594 | Msa1114530:CDS |
| TTGTCCCATACAATGAAATG+TGG | 0.713044 | 7_3:-61376571 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATTTGAATAATTGAAAA+TGG | + | chr7_3:61375874-61375893 | Msa1114530:intron | 15.0% |
| !!! | AAATATGTTACCAAAAATTT+TGG | + | chr7_3:61376101-61376120 | Msa1114530:intron | 15.0% |
| !!! | TTTTTAAATTGAATTCGTTA+CGG | - | chr7_3:61376144-61376163 | None:intergenic | 15.0% |
| !!! | TAAAATTTTGCATTGAAATA+AGG | - | chr7_3:61376367-61376386 | None:intergenic | 15.0% |
| !!! | TATCTAAATATTTTTCTATG+AGG | - | chr7_3:61377020-61377039 | None:intergenic | 15.0% |
| !! | ATAAAGTAAATGTTAAAACA+TGG | - | chr7_3:61377188-61377207 | None:intergenic | 15.0% |
| !!! | AAACTTTTTGTTTTTTGAAA+CGG | - | chr7_3:61377534-61377553 | None:intergenic | 15.0% |
| !! | ATATTTCAATGATATACAAT+AGG | + | chr7_3:61377938-61377957 | Msa1114530:intron | 15.0% |
| !! | ACTTCAAATAATAATACATT+TGG | + | chr7_3:61378067-61378086 | Msa1114530:intron | 15.0% |
| !!! | TAGGATAAGAATAAGATTTT+GGG | - | chr7_3:61374966-61374985 | None:intergenic | 20.0% |
| !!! | TTAGGATAAGAATAAGATTT+TGG | - | chr7_3:61374967-61374986 | None:intergenic | 20.0% |
| !!! | ATTTATTCTTGTTACTTGTT+AGG | - | chr7_3:61374985-61375004 | None:intergenic | 20.0% |
| !!! | CAAGTAACAAGAATAAATTT+TGG | + | chr7_3:61374987-61375006 | Msa1114530:five_prime_UTR | 20.0% |
| !! | CACAATGTTAGTATATTAAT+AGG | + | chr7_3:61375040-61375059 | Msa1114530:five_prime_UTR | 20.0% |
| !!! | TTTCTTTTAGTTTTTGATCA+TGG | + | chr7_3:61375166-61375185 | Msa1114530:exon | 20.0% |
| !! | AAATTAGTAACAACTTTCAA+AGG | - | chr7_3:61375605-61375624 | None:intergenic | 20.0% |
| !! | ATTTGAATAATTGAAAATGG+TGG | + | chr7_3:61375877-61375896 | Msa1114530:intron | 20.0% |
| !! | TAATTCATTAACCACTAATT+TGG | - | chr7_3:61375918-61375937 | None:intergenic | 20.0% |
| !! | CGATGATTAATGAATATAAT+AGG | - | chr7_3:61375966-61375985 | None:intergenic | 20.0% |
| !!! | AAAAAGAACTCCAAAATTTT+TGG | - | chr7_3:61376114-61376133 | None:intergenic | 20.0% |
| !! | AGTATGAAAATGAAAACAAT+AGG | - | chr7_3:61376169-61376188 | None:intergenic | 20.0% |
| !! | TAAGTACAAATTTCATTTCT+TGG | - | chr7_3:61376274-61376293 | None:intergenic | 20.0% |
| !!! | ATTAACTTGAAATTTGAGAA+AGG | + | chr7_3:61377128-61377147 | Msa1114530:intron | 20.0% |
| !! | TAAATGTTAAAACATGGAAA+TGG | - | chr7_3:61377182-61377201 | None:intergenic | 20.0% |
| !! | TTCATTGTAATGATATAATC+AGG | + | chr7_3:61377233-61377252 | Msa1114530:intron | 20.0% |
| !! | TACTCTTGTTAATTATTGTT+AGG | - | chr7_3:61377839-61377858 | None:intergenic | 20.0% |
| !!! | ACATTTAACCTAACTTATTT+TGG | - | chr7_3:61377994-61378013 | None:intergenic | 20.0% |
| !! | TCAAAAGATAACAAGTTTAA+GGG | - | chr7_3:61378038-61378057 | None:intergenic | 20.0% |
| ! | GTTGAGTTATCAAAAATTGA+AGG | + | chr7_3:61375012-61375031 | Msa1114530:five_prime_UTR | 25.0% |
| ! | AAATGTGAATGTAAGTTGTT+AGG | - | chr7_3:61375097-61375116 | None:intergenic | 25.0% |
| !!! | AAATGAATCAAAGAAGTACT+AGG | - | chr7_3:61375148-61375167 | None:intergenic | 25.0% |
| !!! | TTTTAGTTTTTGATCATGGT+GGG | + | chr7_3:61375170-61375189 | Msa1114530:exon | 25.0% |
| ! | TCATCTCAGAATCATAATAA+TGG | + | chr7_3:61375212-61375231 | Msa1114530:CDS | 25.0% |
| !!! | GAATCATAATAATGGATTAG+AGG | + | chr7_3:61375220-61375239 | Msa1114530:CDS | 25.0% |
| ! | AGACTAATTGGTAAAACTAA+TGG | + | chr7_3:61375263-61375282 | Msa1114530:CDS | 25.0% |
| ! | ACAAAGTACAAATCAGAATA+TGG | + | chr7_3:61375375-61375394 | Msa1114530:CDS | 25.0% |
| !! | ACCATCTTTAAGAATTTCAT+CGG | - | chr7_3:61375549-61375568 | None:intergenic | 25.0% |
| ! | AGAGTAACTGCTAAAATATA+AGG | - | chr7_3:61376302-61376321 | None:intergenic | 25.0% |
| !!! | TAGATTTCTGAAGCAATATT+TGG | - | chr7_3:61376475-61376494 | None:intergenic | 25.0% |
| ! | TTGAAAAATGTCTATGCAAT+TGG | + | chr7_3:61376628-61376647 | Msa1114530:CDS | 25.0% |
| !! | CCTAAGTTGGAATAATATAA+AGG | - | chr7_3:61376866-61376885 | None:intergenic | 25.0% |
| ! | CCTTTATATTATTCCAACTT+AGG | + | chr7_3:61376863-61376882 | Msa1114530:intron | 25.0% |
| ! | AAGTTATGTAAATCCTAAGT+TGG | - | chr7_3:61376879-61376898 | None:intergenic | 25.0% |
| ! | TGCAACTGTAAATTGAATTA+AGG | + | chr7_3:61377063-61377082 | Msa1114530:intron | 25.0% |
| ! | AAATGGCATTATAACATTTG+AGG | - | chr7_3:61377165-61377184 | None:intergenic | 25.0% |
| ! | ATATCATTACAATGAAAAGC+AGG | - | chr7_3:61377229-61377248 | None:intergenic | 25.0% |
| ! | TGTAATGATATAATCAGGAA+TGG | + | chr7_3:61377238-61377257 | Msa1114530:intron | 25.0% |
| ! | ACTTATGTGACATTGTTAAA+AGG | + | chr7_3:61377392-61377411 | Msa1114530:CDS | 25.0% |
| !! | ACTTGTATGTAATTTTCTTG+AGG | + | chr7_3:61377561-61377580 | Msa1114530:intron | 25.0% |
| ! | TCTACAAAATATTGATATCC+AGG | + | chr7_3:61377803-61377822 | Msa1114530:CDS | 25.0% |
| ! | TTACTCATACTTAACAACAA+AGG | - | chr7_3:61377875-61377894 | None:intergenic | 25.0% |
| ! | TGTTAAGTATGAGTAATTAG+AGG | + | chr7_3:61377879-61377898 | Msa1114530:intron | 25.0% |
| ! | TTCTAATGCCAAAATAAGTT+AGG | + | chr7_3:61377983-61378002 | Msa1114530:intron | 25.0% |
| ! | CTCAAAAGATAACAAGTTTA+AGG | - | chr7_3:61378039-61378058 | None:intergenic | 25.0% |
| ! | TCAAGTTTTCATCCCATATT+TGG | + | chr7_3:61375117-61375136 | Msa1114530:five_prime_UTR | 30.0% |
| TACTAGGAAGAACCAAATAT+GGG | - | chr7_3:61375132-61375151 | None:intergenic | 30.0% | |
| !!! | CTTTTAGTTTTTGATCATGG+TGG | + | chr7_3:61375169-61375188 | Msa1114530:exon | 30.0% |
| CCAATACACACAATTCTTAA+TGG | - | chr7_3:61375293-61375312 | None:intergenic | 30.0% | |
| CCATTAAGAATTGTGTGTAT+TGG | + | chr7_3:61375290-61375309 | Msa1114530:CDS | 30.0% | |
| !!! | CAAGAGAAGATGTTTTAAGA+AGG | + | chr7_3:61375459-61375478 | Msa1114530:CDS | 30.0% |
| AAATATGTTGAAGCAAGACT+TGG | + | chr7_3:61375506-61375525 | Msa1114530:CDS | 30.0% | |
| ! | TAATTTGCAAGAAGCTGTTT+GGG | + | chr7_3:61375619-61375638 | Msa1114530:CDS | 30.0% |
| ! | GATGCTGATATTGTTGTTAA+TGG | + | chr7_3:61375641-61375660 | Msa1114530:CDS | 30.0% |
| TTAGACAGAGAGATTATAAC+AGG | - | chr7_3:61375737-61375756 | None:intergenic | 30.0% | |
| GTTATAATCTCTCTGTCTAA+AGG | + | chr7_3:61375737-61375756 | Msa1114530:CDS | 30.0% | |
| !! | GCTTGATGAATCATTTTTGT+GGG | - | chr7_3:61375803-61375822 | None:intergenic | 30.0% |
| !! | TGCTTGATGAATCATTTTTG+TGG | - | chr7_3:61375804-61375823 | None:intergenic | 30.0% |
| AGTGGTTAATGAATTAACGT+CGG | + | chr7_3:61375922-61375941 | Msa1114530:intron | 30.0% | |
| ! | GTTGAATTGTGATAGTTCTA+TGG | + | chr7_3:61376210-61376229 | Msa1114530:intron | 30.0% |
| AGATAAAGTATGTTCTCCAT+AGG | - | chr7_3:61376445-61376464 | None:intergenic | 30.0% | |
| ATGGAGAACATACTTTATCT+TGG | + | chr7_3:61376445-61376464 | Msa1114530:CDS | 30.0% | |
| TGTCTAAGAAACTTTGCTAA+AGG | - | chr7_3:61376550-61376569 | None:intergenic | 30.0% | |
| ACAACCACATTTCATTGTAT+GGG | + | chr7_3:61376567-61376586 | Msa1114530:CDS | 30.0% | |
| ACATAAGTATCAGCTAGTAA+TGG | - | chr7_3:61377380-61377399 | None:intergenic | 30.0% | |
| ! | TGGTGTATGTTTGATTTCTT+AGG | + | chr7_3:61378141-61378160 | Msa1114530:intron | 30.0% |
| ! | GGTGTATGTTTGATTTCTTA+GGG | + | chr7_3:61378142-61378161 | Msa1114530:intron | 30.0% |
| ! | ATGCAATTCTAAAAGCTTTG+AGG | + | chr7_3:61378177-61378196 | Msa1114530:CDS | 30.0% |
| ! | TGCAATTCTAAAAGCTTTGA+GGG | + | chr7_3:61378178-61378197 | Msa1114530:CDS | 30.0% |
| ATGTAGGAAACAATAGTCAA+AGG | + | chr7_3:61378329-61378348 | Msa1114530:three_prime_UTR | 30.0% | |
| TGTAGGAAACAATAGTCAAA+GGG | + | chr7_3:61378330-61378349 | Msa1114530:three_prime_UTR | 30.0% | |
| AAGAAAATATGCAGCAGCAT+TGG | - | chr7_3:61374941-61374960 | None:intergenic | 35.0% | |
| GTACTAGGAAGAACCAAATA+TGG | - | chr7_3:61375133-61375152 | None:intergenic | 35.0% | |
| !!! | ATCATGGTGGGAAGTATTTT+GGG | + | chr7_3:61375182-61375201 | Msa1114530:exon | 35.0% |
| GATGAGTTTAGGAGACTAAT+TGG | + | chr7_3:61375251-61375270 | Msa1114530:CDS | 35.0% | |
| ! | GCACTTTTACAAGACAGTTA+TGG | + | chr7_3:61375341-61375360 | Msa1114530:CDS | 35.0% |
| GCCGATGAAATTCTTAAAGA+TGG | + | chr7_3:61375545-61375564 | Msa1114530:CDS | 35.0% | |
| ACAACTTTCAAAGGACAAAC+AGG | - | chr7_3:61375596-61375615 | None:intergenic | 35.0% | |
| ! | CTAATTTGCAAGAAGCTGTT+TGG | + | chr7_3:61375618-61375637 | Msa1114530:CDS | 35.0% |
| TTCGAAAATCTCACGAGTTT+CGG | - | chr7_3:61375678-61375697 | None:intergenic | 35.0% | |
| TCGAAGAGATTAGCAAGTAT+TGG | + | chr7_3:61375693-61375712 | Msa1114530:CDS | 35.0% | |
| !! | AGAGATTAGCAAGTATTGGA+AGG | + | chr7_3:61375697-61375716 | Msa1114530:CDS | 35.0% |
| !! | TAAAGGTATTGAAGCTGCAT+TGG | + | chr7_3:61375754-61375773 | Msa1114530:CDS | 35.0% |
| TTTGTGGGAGTTACAATATG+AGG | - | chr7_3:61375788-61375807 | None:intergenic | 35.0% | |
| TACTTGTTCAATCCTTGCAA+AGG | - | chr7_3:61375856-61375875 | None:intergenic | 35.0% | |
| ATGCAAAGAGTGAAGAATGA+GGG | - | chr7_3:61376400-61376419 | None:intergenic | 35.0% | |
| AATGCAAAGAGTGAAGAATG+AGG | - | chr7_3:61376401-61376420 | None:intergenic | 35.0% | |
| GAGAACATACTTTATCTTGG+TGG | + | chr7_3:61376448-61376467 | Msa1114530:CDS | 35.0% | |
| TGCTTCAGAAATCTACAACA+AGG | + | chr7_3:61376480-61376499 | Msa1114530:CDS | 35.0% | |
| GACAACCACATTTCATTGTA+TGG | + | chr7_3:61376566-61376585 | Msa1114530:CDS | 35.0% | |
| TTGTCCCATACAATGAAATG+TGG | - | chr7_3:61376574-61376593 | None:intergenic | 35.0% | |
| ! | CGCTTTATGTCTTCATGTTT+TGG | + | chr7_3:61376679-61376698 | Msa1114530:intron | 35.0% |
| !! | CTGCTCTAATATTTTTGCAG+GGG | - | chr7_3:61376742-61376761 | None:intergenic | 35.0% |
| !! | CCTGCTCTAATATTTTTGCA+GGG | - | chr7_3:61376743-61376762 | None:intergenic | 35.0% |
| !! | TCCTGCTCTAATATTTTTGC+AGG | - | chr7_3:61376744-61376763 | None:intergenic | 35.0% |
| ! | ACATGCCATTTATCTCTACT+AGG | + | chr7_3:61377663-61377682 | Msa1114530:intron | 35.0% |
| ! | CATGCCATTTATCTCTACTA+GGG | + | chr7_3:61377664-61377683 | Msa1114530:intron | 35.0% |
| GCAATACATTTAGGCTTGAT+TGG | - | chr7_3:61377726-61377745 | None:intergenic | 35.0% | |
| CTTCAGGATGCAATACATTT+AGG | - | chr7_3:61377735-61377754 | None:intergenic | 35.0% | |
| !!! | GCAACATGCTTTTTTTCTTC+AGG | - | chr7_3:61377751-61377770 | None:intergenic | 35.0% |
| ! | TGTAGAGTGTCTTCAAGATA+GGG | - | chr7_3:61377789-61377808 | None:intergenic | 35.0% |
| ! | TTGTAGAGTGTCTTCAAGAT+AGG | - | chr7_3:61377790-61377809 | None:intergenic | 35.0% |
| TTGTTAGGAGATTGATTACC+TGG | - | chr7_3:61377824-61377843 | None:intergenic | 35.0% | |
| TAATTAGAGGATGTGAAGTG+AGG | + | chr7_3:61377892-61377911 | Msa1114530:intron | 35.0% | |
| AATTAGAGGATGTGAAGTGA+GGG | + | chr7_3:61377893-61377912 | Msa1114530:intron | 35.0% | |
| AAATAAGTTTCCCATGCTTC+TGG | + | chr7_3:61378121-61378140 | Msa1114530:intron | 35.0% | |
| !!! | CCACAATGCAGTGTTTTTTT+TGG | - | chr7_3:61378469-61378488 | None:intergenic | 35.0% |
| CCAAAAAAAACACTGCATTG+TGG | + | chr7_3:61378466-61378485 | Msa1114530:three_prime_UTR | 35.0% | |
| !!! | AAGAAGTGTTGCTCCAATTT+TGG | - | chr7_3:61378492-61378511 | None:intergenic | 35.0% |
| !!! | GATCATGGTGGGAAGTATTT+TGG | + | chr7_3:61375181-61375200 | Msa1114530:exon | 40.0% |
| !!! | GTGGGAAGTATTTTGGGAAA+TGG | + | chr7_3:61375188-61375207 | Msa1114530:CDS | 40.0% |
| AGGAGAAGCTTGATGAGTTT+AGG | + | chr7_3:61375240-61375259 | Msa1114530:CDS | 40.0% | |
| AGAATTGTGTGTATTGGAGC+AGG | + | chr7_3:61375296-61375315 | Msa1114530:CDS | 40.0% | |
| ATCAGAATATGGAGAAGAGC+AGG | + | chr7_3:61375386-61375405 | Msa1114530:CDS | 40.0% | |
| !! | TTGAAGCAAGACTTGGTGAT+AGG | + | chr7_3:61375513-61375532 | Msa1114530:CDS | 40.0% |
| GGAGTTACAATATGAGGAAC+AGG | - | chr7_3:61375782-61375801 | None:intergenic | 40.0% | |
| CTTGCAAAGGCAAACAGAAA+TGG | - | chr7_3:61375843-61375862 | None:intergenic | 40.0% | |
| CATTTCTGTTTGCCTTTGCA+AGG | + | chr7_3:61375841-61375860 | Msa1114530:intron | 40.0% | |
| GGTTAATGAATTAACGTCGG+TGG | + | chr7_3:61375925-61375944 | Msa1114530:intron | 40.0% | |
| ! | CTTTCGCGACAACTTTTAAG+TGG | - | chr7_3:61376026-61376045 | None:intergenic | 40.0% |
| TCAGATATCAGATGCGCTAT+TGG | - | chr7_3:61376071-61376090 | None:intergenic | 40.0% | |
| AGTGAAGAATGAGGGATGAA+AGG | - | chr7_3:61376392-61376411 | None:intergenic | 40.0% | |
| TATGCCAATGCTCGAATTTG+TGG | + | chr7_3:61376505-61376524 | Msa1114530:CDS | 40.0% | |
| GAATTTGTGGAGCTGAGAAA+TGG | + | chr7_3:61376518-61376537 | Msa1114530:CDS | 40.0% | |
| AATGTCTATGCAATTGGAGC+TGG | + | chr7_3:61376634-61376653 | Msa1114530:CDS | 40.0% | |
| CCCTGCAAAAATATTAGAGC+AGG | + | chr7_3:61376740-61376759 | Msa1114530:intron | 40.0% | |
| GGAGACAGTTTAACGATAAG+TGG | - | chr7_3:61376936-61376955 | None:intergenic | 40.0% | |
| ! | GGACAGAGTTCTAACTTCAA+CGG | - | chr7_3:61376957-61376976 | None:intergenic | 40.0% |
| GTTTAGCCTAGTAGTCTCAA+GGG | - | chr7_3:61376978-61376997 | None:intergenic | 40.0% | |
| AGTTTAGCCTAGTAGTCTCA+AGG | - | chr7_3:61376979-61376998 | None:intergenic | 40.0% | |
| CTTGTCTCTATAGCATGTGA+AGG | - | chr7_3:61377100-61377119 | None:intergenic | 40.0% | |
| CACATGCTATAGAGACAAGA+AGG | + | chr7_3:61377101-61377120 | Msa1114530:intron | 40.0% | |
| AGTAGCACTCTCATTGGTAA+GGG | - | chr7_3:61377270-61377289 | None:intergenic | 40.0% | |
| TAGTAGCACTCTCATTGGTA+AGG | - | chr7_3:61377271-61377290 | None:intergenic | 40.0% | |
| TTTGCTAGTAGCACTCTCAT+TGG | - | chr7_3:61377276-61377295 | None:intergenic | 40.0% | |
| TACGGTCAGATGTTAGCTAA+GGG | + | chr7_3:61377428-61377447 | Msa1114530:CDS | 40.0% | |
| TAGTGGCAAAGGAATGATTC+AGG | + | chr7_3:61377481-61377500 | Msa1114530:CDS | 40.0% | |
| CACTCCCTAGTAGAGATAAA+TGG | - | chr7_3:61377671-61377690 | None:intergenic | 40.0% | |
| AAGATAGGGCAAAGTTCAAC+AGG | - | chr7_3:61377775-61377794 | None:intergenic | 40.0% | |
| ! | CAAACATACACCAGAAGCAT+GGG | - | chr7_3:61378134-61378153 | None:intergenic | 40.0% |
| TCAAACATACACCAGAAGCA+TGG | - | chr7_3:61378135-61378154 | None:intergenic | 40.0% | |
| CACAAAGTCATGCTTTCTAC+AGG | + | chr7_3:61378240-61378259 | Msa1114530:CDS | 40.0% | |
| ! | CAACAGTGATTGTTTTCCCT+TGG | + | chr7_3:61378278-61378297 | Msa1114530:exon | 40.0% |
| !!! | TCCACACTTGTTTTTGCCAA+GGG | - | chr7_3:61378297-61378316 | None:intergenic | 40.0% |
| !!! | ATCCACACTTGTTTTTGCCA+AGG | - | chr7_3:61378298-61378317 | None:intergenic | 40.0% |
| TTGGCAAAAACAAGTGTGGA+TGG | + | chr7_3:61378297-61378316 | Msa1114530:three_prime_UTR | 40.0% | |
| AACAAGTGTGGATGGAAACA+TGG | + | chr7_3:61378305-61378324 | Msa1114530:three_prime_UTR | 40.0% | |
| TGGATGGAAACATGGTATGT+AGG | + | chr7_3:61378313-61378332 | Msa1114530:three_prime_UTR | 40.0% | |
| ! | TATGCAGCAGCATTGGAATG+TGG | - | chr7_3:61374934-61374953 | None:intergenic | 45.0% |
| ATCTCACGAGTTTCGGTTGA+AGG | - | chr7_3:61375671-61375690 | None:intergenic | 45.0% | |
| TCACGTCACGTCCAAATTAG+TGG | + | chr7_3:61375904-61375923 | Msa1114530:intron | 45.0% | |
| TGCATTGCAAATTCGACAGC+TGG | + | chr7_3:61376415-61376434 | Msa1114530:intron | 45.0% | |
| AGCTCCACAAATTCGAGCAT+TGG | - | chr7_3:61376512-61376531 | None:intergenic | 45.0% | |
| TTTGTGGAGCTGAGAAATGG+AGG | + | chr7_3:61376521-61376540 | Msa1114530:CDS | 45.0% | |
| TAGTGACCTTGTCACACATG+AGG | + | chr7_3:61376594-61376613 | Msa1114530:CDS | 45.0% | |
| CTTGTCACACATGAGGTCAT+GGG | + | chr7_3:61376601-61376620 | Msa1114530:CDS | 45.0% | |
| TCACCTGTTAACTGAAGAGC+CGG | + | chr7_3:61377340-61377359 | Msa1114530:CDS | 45.0% | |
| AATGGTCCAGCAAGTTTCTC+CGG | - | chr7_3:61377362-61377381 | None:intergenic | 45.0% | |
| TGTTAAAAGGTCGTAACGCG+TGG | + | chr7_3:61377405-61377424 | Msa1114530:CDS | 45.0% | |
| GTACGGTCAGATGTTAGCTA+AGG | + | chr7_3:61377427-61377446 | Msa1114530:CDS | 45.0% | |
| TTCTACAGGCCTTCACTTCT+TGG | + | chr7_3:61378254-61378273 | Msa1114530:CDS | 45.0% | |
| CACTGTTGTCCAAGAAGTGA+AGG | - | chr7_3:61378266-61378285 | None:intergenic | 45.0% | |
| TCCCTTGGCAAAAACAAGTG+TGG | + | chr7_3:61378293-61378312 | Msa1114530:three_prime_UTR | 45.0% | |
| CACTGCATTGTGGCCAAAAT+TGG | + | chr7_3:61378476-61378495 | Msa1114530:three_prime_UTR | 45.0% | |
| TGTGTATTGGAGCAGGTGCT+TGG | + | chr7_3:61375303-61375322 | Msa1114530:CDS | 50.0% | |
| GTGTATTGGAGCAGGTGCTT+GGG | + | chr7_3:61375304-61375323 | Msa1114530:CDS | 50.0% | |
| TGTATTGGAGCAGGTGCTTG+GGG | + | chr7_3:61375305-61375324 | Msa1114530:CDS | 50.0% | |
| CCATGACCTCATGTGTGACA+AGG | - | chr7_3:61376603-61376622 | None:intergenic | 50.0% | |
| CCTTGTCACACATGAGGTCA+TGG | + | chr7_3:61376600-61376619 | Msa1114530:CDS | 50.0% | |
| TAGCCTGAGACAGGCACAAT+CGG | - | chr7_3:61376827-61376846 | None:intergenic | 50.0% | |
| GTGGAAAAATCGCTCGAGCA+GGG | - | chr7_3:61376917-61376936 | None:intergenic | 50.0% | |
| AGTGGAAAAATCGCTCGAGC+AGG | - | chr7_3:61376918-61376937 | None:intergenic | 50.0% | |
| CTCTGTCCCTTGAGACTACT+AGG | + | chr7_3:61376969-61376988 | Msa1114530:intron | 50.0% | |
| TCTCCGGCTCTTCAGTTAAC+AGG | - | chr7_3:61377346-61377365 | None:intergenic | 50.0% | |
| AAAGGTCGTAACGCGTGGTA+CGG | + | chr7_3:61377410-61377429 | Msa1114530:CDS | 50.0% | |
| AGCTAAGGGTGAACTAAGCC+CGG | + | chr7_3:61377442-61377461 | Msa1114530:CDS | 50.0% | |
| TAATGCTGTCACCCATGTCC+GGG | - | chr7_3:61377463-61377482 | None:intergenic | 50.0% | |
| CTAATGCTGTCACCCATGTC+CGG | - | chr7_3:61377464-61377483 | None:intergenic | 50.0% | |
| GACATGGGTGACAGCATTAG+TGG | + | chr7_3:61377464-61377483 | Msa1114530:CDS | 50.0% | |
| GGTGACAGCATTAGTGGCAA+AGG | + | chr7_3:61377470-61377489 | Msa1114530:CDS | 50.0% | |
| GCAATTGCAATGCGTTCTCG+TGG | - | chr7_3:61378221-61378240 | None:intergenic | 50.0% | |
| ! | TTCGACAGCTGGAGTGCCTA+TGG | + | chr7_3:61376426-61376445 | Msa1114530:intron | 55.0% |
| GTCACACATGAGGTCATGGG+TGG | + | chr7_3:61376604-61376623 | Msa1114530:CDS | 55.0% | |
| CAACCGATTGTGCCTGTCTC+AGG | + | chr7_3:61376821-61376840 | Msa1114530:intron | 55.0% | |
| GAAGAGCCGGAGAAACTTGC+TGG | + | chr7_3:61377353-61377372 | Msa1114530:CDS | 55.0% | |
| GGTGAACTAAGCCCGGACAT+GGG | + | chr7_3:61377449-61377468 | Msa1114530:CDS | 55.0% | |
| !! | CTACTAGGGAGTGTCTGCAG+TGG | + | chr7_3:61377678-61377697 | Msa1114530:intron | 55.0% |
| GCCTGTCTCAGGCTACAGTG+CGG | + | chr7_3:61376832-61376851 | Msa1114530:intron | 60.0% | |
| GGGTGAACTAAGCCCGGACA+TGG | + | chr7_3:61377448-61377467 | Msa1114530:CDS | 60.0% | |
| GCCGCACTGTAGCCTGAGAC+AGG | - | chr7_3:61376836-61376855 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 61374921 | 61378543 | 61374921 | ID=Msa1114530;Name=Msa1114530 |
| chr7_3 | mRNA | 61374921 | 61378543 | 61374921 | ID=Msa1114530-mRNA-1;Parent=Msa1114530;Name=Msa1114530-mRNA-1;_AED=0.08;_eAED=0.08;_QI=264|1|1|1|1|1|5|257|457 |
| chr7_3 | exon | 61374921 | 61375824 | 61374921 | ID=Msa1114530-mRNA-1:exon:13916;Parent=Msa1114530-mRNA-1 |
| chr7_3 | exon | 61376434 | 61376655 | 61376434 | ID=Msa1114530-mRNA-1:exon:13917;Parent=Msa1114530-mRNA-1 |
| chr7_3 | exon | 61377255 | 61377502 | 61377255 | ID=Msa1114530-mRNA-1:exon:13918;Parent=Msa1114530-mRNA-1 |
| chr7_3 | exon | 61377685 | 61377824 | 61377685 | ID=Msa1114530-mRNA-1:exon:13919;Parent=Msa1114530-mRNA-1 |
| chr7_3 | exon | 61378163 | 61378543 | 61378163 | ID=Msa1114530-mRNA-1:exon:13920;Parent=Msa1114530-mRNA-1 |
| chr7_3 | five_prime_UTR | 61374921 | 61375184 | 61374921 | ID=Msa1114530-mRNA-1:five_prime_utr;Parent=Msa1114530-mRNA-1 |
| chr7_3 | CDS | 61375185 | 61375824 | 61375185 | ID=Msa1114530-mRNA-1:cds;Parent=Msa1114530-mRNA-1 |
| chr7_3 | CDS | 61376434 | 61376655 | 61376434 | ID=Msa1114530-mRNA-1:cds;Parent=Msa1114530-mRNA-1 |
| chr7_3 | CDS | 61377255 | 61377502 | 61377255 | ID=Msa1114530-mRNA-1:cds;Parent=Msa1114530-mRNA-1 |
| chr7_3 | CDS | 61377685 | 61377824 | 61377685 | ID=Msa1114530-mRNA-1:cds;Parent=Msa1114530-mRNA-1 |
| chr7_3 | CDS | 61378163 | 61378286 | 61378163 | ID=Msa1114530-mRNA-1:cds;Parent=Msa1114530-mRNA-1 |
| chr7_3 | three_prime_UTR | 61378287 | 61378543 | 61378287 | ID=Msa1114530-mRNA-1:three_prime_utr;Parent=Msa1114530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
