AlfalfaGEDB | Msa1079450

M. sativa cultivar zhongmu-4 / Msa1079450

KEGG: -
GO: -
PFAM: PF13456.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079450	XP_024625476.1	85.255	373	20	4	1	367	1	344	0.0	610

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079450	sp\|P64956\|Y2253_MYCBO	42.400	125	71	1	228	351	3	127	1.35e-22	100

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079450	A0A396H5E5	85.255	373	20	4	1	367	1	344	0.0	610

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0968850	Msa1079450	0.874398	6.968457e-68	-8.615850e-47
Msa1079450	Msa1394970	0.876663	1.167279e-68	-8.615850e-47
Msa1079450	Msa1418410	0.856984	2.223055e-62	-8.615850e-47

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079450	MtrunA17_Chr7g0264421	85.255	373	20	4	1	367	1	344	0.0	610
Msa1079450	MtrunA17_Chr2g0329701	72.886	402	40	9	5	367	3	374	0.0	549
Msa1079450	MtrunA17_Chr6g0451411	48.428	318	143	4	60	364	4	313	2.80e-85	261
Msa1079450	MtrunA17_Chr6g0451421	56.429	140	61	0	225	364	6	145	2.48e-47	157
Msa1079450	MtrunA17_Chr2g0325301	51.064	141	69	0	225	365	8	148	4.18e-46	154
Msa1079450	MtrunA17_Chr6g0451441	46.667	150	72	1	225	366	318	467	1.99e-33	129
Msa1079450	MtrunA17_Chr6g0451391	52.941	85	39	1	59	142	3	87	2.89e-22	90.1
Msa1079450	MtrunA17_Chr6g0451451	50.000	84	42	0	281	364	1	84	3.73e-19	81.3
Msa1079450	MtrunA17_Chr1g0158081	35.246	122	77	1	232	353	1211	1330	1.30e-12	69.3
Msa1079450	MtrunA17_Chr3g0110591	34.426	122	78	1	232	353	27	146	2.06e-11	65.1

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079450	AT1G24090.1	51.104	317	122	4	47	362	67	351	8.68e-104	310
Msa1079450	AT3G01410.2	47.213	305	138	2	59	362	7	289	1.90e-95	286
Msa1079450	AT3G01410.1	47.213	305	138	2	59	362	7	289	1.90e-95	286
Msa1079450	AT5G51080.3	47.855	303	99	3	60	362	14	257	1.23e-93	280
Msa1079450	AT5G51080.1	47.525	303	100	4	60	362	77	320	5.07e-91	276
Msa1079450	AT5G51080.2	47.525	303	100	4	60	362	77	320	5.07e-91	276

Showing 1 to 6 of 6 entries

Previous1Next

Find 127 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCAACTTCAGGCTAA+TGG	0.289060	7_2:-78666515	None:intergenic
AAACTGGTATTTACCTGGAA+AGG	0.524472	7_2:-78661161	None:intergenic
AAAGGAAATCCTGGAAAAGC+TGG	0.513026	7_2:+78663038	Msa1079450:CDS
AAATCATAAAATCCAACTTC+AGG	0.404779	7_2:-78666522	None:intergenic
AAATCCAACTTCAGGCTAAT+GGG	0.390580	7_2:-78666514	None:intergenic
AAATTCCCCAACAGATCGTT+AGG	0.399114	7_2:+78660706	Msa1079450:five_prime_UTR
AAATTTATCCTTGAGTTCTT+TGG	0.265369	7_2:-78665059	None:intergenic
AACTTGACTTGCTTTCTCAA+GGG	0.557807	7_2:-78662123	None:intergenic
AACTTGACTTGCTTTCTCAA+GGG	0.557807	7_2:-78662192	None:intergenic
AAGATTTATAGGGTTCGTGA+AGG	0.607171	7_2:+78663177	Msa1079450:intron

Showing 1 to 10 of 127 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAATGATGTGATTTGA+AGG	-	chr7_2:78660817-78660836	None:intergenic	30.0%
TGGATCAGGAAAATAATGAA+AGG	+	chr7_2:78660904-78660923	Msa1079450:CDS	30.0%
GGATCAGGAAAATAATGAAA+GGG	+	chr7_2:78660905-78660924	Msa1079450:CDS	30.0%
CAAACCTAAAACCACATTAA+AGG	-	chr7_2:78661386-78661405	None:intergenic	30.0%
GATGTATCTGAATTTGATGT+GGG	-	chr7_2:78661449-78661468	None:intergenic	30.0%
AGATGTATCTGAATTTGATG+TGG	-	chr7_2:78661450-78661469	None:intergenic	30.0%
ACTAATATTAGACTCAATGG+AGG	-	chr7_2:78661646-78661665	None:intergenic	30.0%
TCGACTAATATTAGACTCAA+TGG	-	chr7_2:78661649-78661668	None:intergenic	30.0%
GTTGTTGATGTAAGCTATTA+AGG	+	chr7_2:78661681-78661700	Msa1079450:intron	30.0%
GAAACAGTGAAGTGATAATT+AGG	-	chr7_2:78661762-78661781	None:intergenic	30.0%

Showing 1 to 10 of 398 entries

Previous1 2 3 4 5…40Next

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	78660645	78666740	78660645	ID=Msa1079450;Name=Msa1079450
chr7_2	mRNA	78660645	78666740	78660645	ID=Msa1079450-mRNA-1;Parent=Msa1079450;Name=Msa1079450-mRNA-1;_AED=0.14;_eAED=0.14;_QI=99\|0.85\|0.87\|1\|1\|1\|8\|598\|367
chr7_2	exon	78660645	78661169	78660645	ID=Msa1079450-mRNA-1:exon:19570;Parent=Msa1079450-mRNA-1
chr7_2	exon	78661443	78661508	78661443	ID=Msa1079450-mRNA-1:exon:19571;Parent=Msa1079450-mRNA-1
chr7_2	exon	78662090	78662254	78662090	ID=Msa1079450-mRNA-1:exon:19572;Parent=Msa1079450-mRNA-1
chr7_2	exon	78662987	78663097	78662987	ID=Msa1079450-mRNA-1:exon:19573;Parent=Msa1079450-mRNA-1
chr7_2	exon	78663180	78663323	78663180	ID=Msa1079450-mRNA-1:exon:19574;Parent=Msa1079450-mRNA-1
chr7_2	exon	78665004	78665111	78665004	ID=Msa1079450-mRNA-1:exon:19575;Parent=Msa1079450-mRNA-1
chr7_2	exon	78665955	78666006	78665955	ID=Msa1079450-mRNA-1:exon:19576;Parent=Msa1079450-mRNA-1
chr7_2	exon	78666111	78666740	78666111	ID=Msa1079450-mRNA-1:exon:19577;Parent=Msa1079450-mRNA-1
chr7_2	five_prime_UTR	78660645	78660743	78660645	ID=Msa1079450-mRNA-1:five_prime_utr;Parent=Msa1079450-mRNA-1
chr7_2	CDS	78660744	78661169	78660744	ID=Msa1079450-mRNA-1:cds;Parent=Msa1079450-mRNA-1
chr7_2	CDS	78661443	78661508	78661443	ID=Msa1079450-mRNA-1:cds;Parent=Msa1079450-mRNA-1
chr7_2	CDS	78662090	78662254	78662090	ID=Msa1079450-mRNA-1:cds;Parent=Msa1079450-mRNA-1
chr7_2	CDS	78662987	78663097	78662987	ID=Msa1079450-mRNA-1:cds;Parent=Msa1079450-mRNA-1
chr7_2	CDS	78663180	78663323	78663180	ID=Msa1079450-mRNA-1:cds;Parent=Msa1079450-mRNA-1
chr7_2	CDS	78665004	78665111	78665004	ID=Msa1079450-mRNA-1:cds;Parent=Msa1079450-mRNA-1
chr7_2	CDS	78665955	78666006	78665955	ID=Msa1079450-mRNA-1:cds;Parent=Msa1079450-mRNA-1
chr7_2	CDS	78666111	78666142	78666111	ID=Msa1079450-mRNA-1:cds;Parent=Msa1079450-mRNA-1
chr7_2	three_prime_UTR	78666143	78666740	78666143	ID=Msa1079450-mRNA-1:three_prime_utr;Parent=Msa1079450-mRNA-1

Gene Sequence

>Msa1079450

ATGAACGCTGCTGCTTTCTTCACCCACCTCCCTACCATACTCCGAAGAACAATTACAACTCCGAAGAACACCTTCAAATCACATCATTCTTCTTTTAGTTCTCAATTCTTGTTTACTCCACTAGAAAATAAACTACGAAAAATGAAAGCTGAAACGACGATGGATCAGGAAAATAATGAAAGGGATGCTTTTTATGTTGTGAGGAAAGGGGATGTTGTTGGAATTTACAATACTCTCACTCATTCTCAGGCTCAAGTTGGATCTTCAGTATGTGATCCTCCTGTTAGTGTATACAAGGGATATTCCATGTCCAACGAAACCGAAGAGTACCTTCTCTCGCATGGACTAAAGAATGCTTTATACACAATTAGAGCCTCTGATTTTAAAGAGGATTTGTTTGGCACACTTGTTCCTTGTCCTTTCCAGGATCCCACATCAAATTCAGATACATCTAAAAAGAGAGCTCTAGGAGTGCTTGAACAAGATGATGTGAAAGCAACTGGTTTGACATCTATCTCTGAAGATCCCTTGAGAAAGCAAGTCAAGTTAGATCGTACTGCTGTGGGCGAAGCATCTTCACTTGCAAATAGAGATCCCTTGAGAAAGCAAGTCAAGTTAGATCGTACTGCTGTGGGCGAAGCATCTTCACTTGCAAATTCATATATCCTTGCACAGAAGACTTGTATTGTTGAGTTCGATGGTGCTTCAAAAGGAAATCCTGGAAAAGCTGGTGCTGGGGCTATTCTGCGATCCAAAGATGGGAATTTGATTTATAGGGTTCGTGAAGGTGTGGGTATAGCAACAAACAATGTTGCTGAATATCGTGCAATGATATTGGGAATGAGATATGCTCTTAAAAAAGGATTCACCAATATCTGTATACAAGGGGACTCTAAACTTGTGTGCATGCAGATTGATGGTTCATGGAAGGTCAAGAACGAGAACTTGTTTACATTGTATAAGGTGGCCAAAGAACTCAAGGATAAATTTGCGTCATTCCAGATCAGTCATGTTCTAAGGAACTTCAACTCCGAGGCTGATGCTCAAGCAAATTTAGCCATCCAACTTGCTGATGGCCAAGTTCAGGAGGAGTATGTAGGTTAA

Protein sequence

>Msa1079450

MNAAAFFTHLPTILRRTITTPKNTFKSHHSSFSSQFLFTPLENKLRKMKAETTMDQENNERDAFYVVRKGDVVGIYNTLTHSQAQVGSSVCDPPVSVYKGYSMSNETEEYLLSHGLKNALYTIRASDFKEDLFGTLVPCPFQDPTSNSDTSKKRALGVLEQDDVKATGLTSISEDPLRKQVKLDRTAVGEASSLANRDPLRKQVKLDRTAVGEASSLANSYILAQKTCIVEFDGASKGNPGKAGAGAILRSKDGNLIYRVREGVGIATNNVAEYRAMILGMRYALKKGFTNICIQGDSKLVCMQIDGSWKVKNENLFTLYKVAKELKDKFASFQISHVLRNFNSEADAQANLAIQLADGQVQEEYVG*