AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1082920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1082920 MtrunA17_Chr7g0270771 94.505 273 13 1 1 273 1 271 0.0 531
Msa1082920 MtrunA17_Chr4g0027071 33.138 341 202 6 12 328 19 357 1.02e-56 193
Msa1082920 MtrunA17_Chr6g0470591 31.017 403 233 13 13 375 19 416 4.08e-50 176
Msa1082920 MtrunA17_Chr7g0273781 31.180 356 196 13 4 327 42 380 1.01e-47 170
Msa1082920 MtrunA17_Chr1g0165671 31.054 351 200 10 4 327 26 361 2.20e-47 169
Msa1082920 MtrunA17_Chr1g0191081 30.117 342 215 7 5 327 18 354 9.35e-47 166
Msa1082920 MtrunA17_Chr1g0165661 31.195 343 212 10 4 327 8 345 1.05e-46 166
Msa1082920 MtrunA17_Chr7g0273791 31.373 357 194 12 4 327 9 347 1.11e-46 167
Msa1082920 MtrunA17_Chr3g0106691 35.484 341 175 13 12 319 63 391 6.39e-46 166
Msa1082920 MtrunA17_Chr7g0273761 31.129 363 197 13 3 330 380 724 1.91e-45 168
Msa1082920 MtrunA17_Chr7g0273761 31.193 218 114 8 136 330 32 236 5.65e-25 107
Msa1082920 MtrunA17_Chr5g0433641 29.888 358 205 9 4 330 9 351 3.00e-45 162
Msa1082920 MtrunA17_Chr7g0273731 29.444 360 197 11 4 327 92 430 1.60e-44 162
Msa1082920 MtrunA17_Chr1g0165711 32.822 326 175 9 4 301 8 317 1.89e-44 159
Msa1082920 MtrunA17_Chr3g0106721 34.795 342 179 13 12 319 17 348 6.31e-43 156
Msa1082920 MtrunA17_Chr7g0273721 28.611 360 208 8 4 330 10 353 1.52e-42 155
Msa1082920 MtrunA17_Chr3g0132001 30.365 438 246 17 2 413 11 415 2.51e-42 154
Msa1082920 MtrunA17_Chr7g0224391 29.551 379 211 12 12 359 23 376 1.88e-41 152
Msa1082920 MtrunA17_Chr8g0386141 31.871 342 196 11 12 328 14 343 3.96e-41 151
Msa1082920 MtrunA17_Chr2g0283361 31.250 336 209 10 23 339 22 354 4.84e-40 148
Msa1082920 MtrunA17_Chr3g0106661 29.787 423 240 15 12 389 17 427 6.21e-40 148
Msa1082920 MtrunA17_Chr1g0165681 28.212 358 201 10 5 327 9 345 4.13e-39 146
Msa1082920 MtrunA17_Chr3g0113821 29.620 395 217 14 4 359 3 375 1.68e-37 141
Msa1082920 MtrunA17_Chr3g0106741 35.943 281 152 12 69 328 59 332 5.90e-37 140
Msa1082920 MtrunA17_Chr3g0106761 31.834 289 166 10 49 319 16 291 5.58e-36 136
Msa1082920 MtrunA17_Chr3g0106711 40.957 188 97 3 12 186 17 203 2.69e-35 130
Msa1082920 MtrunA17_Chr8g0371821 29.577 355 221 12 1 334 1 347 7.05e-35 134
Msa1082920 MtrunA17_Chr2g0306321 29.944 354 199 11 13 328 26 368 9.81e-35 134
Msa1082920 MtrunA17_Chr3g0141851 29.703 404 242 17 13 395 20 402 1.82e-34 133
Msa1082920 MtrunA17_Chr4g0001861 28.783 337 213 11 12 328 10 339 5.67e-34 131
Msa1082920 MtrunA17_Chr4g0072041 27.206 408 243 14 13 374 22 421 4.77e-31 124
Msa1082920 MtrunA17_Chr2g0334001 27.761 335 218 10 12 328 10 338 5.45e-31 123
Msa1082920 MtrunA17_Chr7g0253541 28.530 347 212 13 13 328 12 353 5.55e-30 120
Msa1082920 MtrunA17_Chr4g0054081 26.952 397 243 13 18 374 27 416 2.71e-27 113
Msa1082920 MtrunA17_Chr7g0253501 28.977 352 211 15 10 327 7 353 4.67e-26 109
Msa1082920 MtrunA17_Chr7g0253531 27.841 352 215 14 10 327 7 353 2.74e-24 104
Msa1082920 MtrunA17_Chr7g0252731 26.282 312 200 8 2 289 14 319 1.49e-23 102
Msa1082920 MtrunA17_Chr3g0087401 25.656 343 224 9 13 328 10 348 3.15e-23 101
Msa1082920 MtrunA17_Chr6g0471971 32.484 157 92 5 152 296 2 156 1.60e-19 87.0
Msa1082920 MtrunA17_Chr3g0106631 33.784 148 83 5 137 271 2 147 2.95e-18 81.6
Msa1082920 MtrunA17_Chr4g0004691 29.480 173 95 4 14 174 16 173 3.56e-18 82.0
Msa1082920 MtrunA17_Chr3g0098961 33.750 160 92 3 4 152 12 168 2.44e-17 79.7
Msa1082920 MtrunA17_Chr5g0436621 23.229 353 202 10 13 299 14 363 9.03e-17 82.0
Msa1082920 MtrunA17_Chr2g0311401 25.728 206 139 4 135 328 5 208 3.02e-16 79.0
Msa1082920 MtrunA17_Chr7g0273741 39.048 105 59 1 4 103 9 113 4.56e-16 75.1
Msa1082920 MtrunA17_Chr3g0123061 24.501 351 226 16 1 336 1 327 4.69e-16 79.7
Msa1082920 MtrunA17_Chr3g0134091 25.275 273 168 9 55 302 68 329 3.21e-15 77.4
Msa1082920 MtrunA17_Chr3g0125001 24.522 314 200 13 49 335 49 352 8.24e-15 75.9
Msa1082920 MtrunA17_Chr5g0442691 22.983 409 264 14 2 375 30 422 1.17e-14 75.9
Msa1082920 MtrunA17_Chr8g0359251 24.521 261 183 6 55 302 63 322 1.95e-14 74.7
Msa1082920 MtrunA17_Chr5g0442701 22.494 409 266 13 2 375 7 399 4.56e-14 73.9
Msa1082920 MtrunA17_Chr3g0095731 26.522 230 143 7 55 265 65 287 8.83e-14 72.8
Msa1082920 MtrunA17_Chr3g0134041 26.894 264 175 9 55 302 66 327 1.35e-13 72.4
Msa1082920 MtrunA17_Chr6g0471371 37.255 102 59 1 5 101 9 110 1.36e-13 68.9
Msa1082920 MtrunA17_Chr4g0010381 25.392 319 199 13 47 332 44 356 2.08e-13 71.6
Msa1082920 MtrunA17_Chr8g0374641 25.076 327 194 12 47 343 49 354 3.89e-13 70.9
Msa1082920 MtrunA17_Chr4g0053111 26.038 265 157 11 55 290 62 316 4.79e-13 70.5
Msa1082920 MtrunA17_Chr5g0438701 21.180 373 267 12 1 359 1 360 5.47e-13 70.5
Msa1082920 MtrunA17_Chr4g0010351 26.460 291 172 12 44 302 42 322 5.60e-13 70.1
Msa1082920 MtrunA17_Chr1g0165741 37.864 103 59 1 4 101 8 110 5.69e-13 66.2
Msa1082920 MtrunA17_Chr8g0376891 29.944 177 102 8 1 166 1 166 1.27e-12 69.3
Msa1082920 MtrunA17_Chr3g0134111 24.910 277 160 13 55 298 65 326 1.28e-12 69.3
Msa1082920 MtrunA17_Chr5g0408911 22.552 337 233 10 4 325 24 347 1.64e-12 68.9
Msa1082920 MtrunA17_Chr3g0095721 29.412 153 97 3 55 203 72 217 1.91e-12 68.9
Msa1082920 MtrunA17_Chr7g0219291 23.794 311 184 12 55 317 416 721 2.73e-12 68.9
Msa1082920 MtrunA17_Chr3g0134121 23.636 275 170 10 55 302 69 330 2.94e-12 68.2
Msa1082920 MtrunA17_Chr2g0278481 25.806 310 195 13 12 301 24 318 3.61e-12 67.8
Msa1082920 MtrunA17_Chr7g0274021 25.498 251 164 7 55 290 63 305 5.14e-12 67.4
Msa1082920 MtrunA17_Chr8g0354371 26.087 299 192 13 55 331 64 355 2.03e-11 65.5
Msa1082920 MtrunA17_Chr5g0438681 27.957 186 116 7 1 177 1 177 3.97e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1082920 AT3G62160.1 54.795 365 153 4 1 360 1 358 3.38e-136 397
Msa1082920 AT5G07080.1 35.000 340 190 9 5 319 14 347 5.22e-54 186
Msa1082920 AT3G47170.1 33.252 409 213 14 12 377 19 410 9.88e-53 183
Msa1082920 AT2G23510.1 31.407 398 222 14 11 378 19 395 2.55e-51 179
Msa1082920 AT1G28680.2 34.024 338 199 10 12 328 11 345 5.72e-49 171
Msa1082920 AT1G28680.1 34.024 338 199 10 12 328 11 345 1.56e-48 172
Msa1082920 AT2G25150.1 30.607 379 227 12 11 362 19 388 2.27e-47 169
Msa1082920 AT5G17540.1 31.054 351 216 9 1 330 5 350 2.16e-44 160
Msa1082920 AT5G41040.2 29.367 395 225 12 12 378 24 392 2.70e-42 154
Msa1082920 AT5G41040.1 29.442 394 224 12 12 377 40 407 4.27e-42 154
Msa1082920 AT3G03480.1 29.199 387 246 10 1 367 15 393 1.38e-41 153
Msa1082920 AT3G48720.1 32.903 310 176 9 2 288 6 306 1.81e-39 147
Msa1082920 AT5G63560.1 28.756 386 235 10 2 366 6 372 2.12e-36 138
Msa1082920 AT1G27620.1 27.342 395 252 10 12 386 16 395 1.43e-34 134
Msa1082920 AT5G48930.1 30.794 315 192 9 12 306 10 318 2.19e-34 133
Msa1082920 AT1G03390.1 28.696 345 208 13 15 330 32 367 9.10e-30 120
Msa1082920 AT2G40230.1 24.731 372 244 13 12 359 12 371 8.08e-27 112
Msa1082920 AT2G19070.1 25.616 406 236 16 20 375 24 413 6.37e-24 103
Msa1082920 AT5G57840.1 25.926 351 230 13 6 331 3 348 1.51e-22 99.8
Msa1082920 AT1G65450.1 23.315 356 237 15 2 328 15 363 1.99e-20 93.6
Msa1082920 AT1G24430.1 25.987 304 205 10 1 294 1 294 4.96e-20 92.0
Msa1082920 AT2G39980.1 24.100 361 205 10 1 299 4 357 3.88e-16 80.5
Msa1082920 AT5G23940.1 23.616 271 175 9 55 299 65 329 4.05e-16 80.5
Msa1082920 AT3G29635.1 24.715 263 169 7 58 293 70 330 4.27e-15 77.4
Msa1082920 AT1G32910.1 24.444 270 165 7 46 290 56 311 1.37e-14 75.9
Msa1082920 AT1G78990.1 24.632 272 173 6 37 290 51 308 1.87e-14 75.5
Msa1082920 AT3G30280.1 24.845 322 187 13 1 291 1 298 3.44e-14 74.7
Msa1082920 AT3G26040.1 24.398 332 223 12 1 316 1 320 3.55e-14 74.3
Msa1082920 AT4G15390.1 26.349 315 189 14 1 291 4 299 1.12e-13 72.8
Msa1082920 AT4G15390.2 26.349 315 189 14 1 291 4 299 1.12e-13 72.8
Msa1082920 AT5G39090.1 25.100 251 159 6 66 291 76 322 1.29e-13 72.8
Msa1082920 AT5G67150.1 26.471 272 166 12 55 298 61 326 2.73e-13 71.6
Msa1082920 AT5G42830.1 23.457 324 205 13 55 346 64 376 3.17e-13 71.6
Msa1082920 AT5G07850.1 25.188 266 163 11 55 295 70 324 4.70e-13 71.2
Msa1082920 AT1G24420.2 25.597 293 194 9 1 278 1 284 9.41e-13 70.1
Msa1082920 AT1G24420.1 25.597 293 194 9 1 278 1 284 9.41e-13 70.1
Msa1082920 AT1G31490.1 24.242 264 175 9 53 303 60 311 1.48e-12 69.3
Msa1082920 AT5G47950.1 24.556 338 226 12 10 338 11 328 5.32e-12 67.8
Msa1082920 AT5G07870.1 25.177 282 164 11 55 302 72 340 1.07e-11 67.0
Msa1082920 AT5G07860.1 24.024 333 180 14 55 344 72 374 1.65e-11 66.2

Find 134 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCACCTTAATGATATT+TGG 0.168139 7_2:-83105665 None:intergenic
CTTATGACCCTTGCTGCTTT+AGG 0.196914 7_2:-83103113 None:intergenic
CCCTTCATTGATCAAATTCA+TGG 0.225599 7_2:+83105991 Msa1082920:CDS
TTGTTTCAGGTGACACAATT+TGG 0.243793 7_2:+83105149 Msa1082920:intron
GTAACTTGGCCTTCGCTTCT+TGG 0.266899 7_2:-83105694 None:intergenic
GGTATTGGGATCAAAATTAA+TGG 0.274653 7_2:-83105516 None:intergenic
CGTGACTAATGGGGTCTTCT+TGG 0.289626 7_2:-83103015 None:intergenic
ATAAACAGTGTGGCGTAATT+TGG 0.305140 7_2:-83105794 None:intergenic
TTAAGAACAAGATGTTATTA+TGG 0.308731 7_2:+83106085 Msa1082920:three_prime_UTR
ACGAGCTTCACTTGGGTATT+GGG 0.317286 7_2:-83105530 None:intergenic
GACATGTCTAACGTGACTAA+TGG 0.317293 7_2:-83103026 None:intergenic
CACGAGCTTCACTTGGGTAT+TGG 0.338327 7_2:-83105531 None:intergenic
ACATGTCTAACGTGACTAAT+GGG 0.342831 7_2:-83103025 None:intergenic
CTACGGAAACTGTTTCTTCC+CGG 0.347560 7_2:+83105604 Msa1082920:CDS
TATGTCTGAGTGGGGAGGTT+GGG 0.347929 7_2:+83105814 Msa1082920:CDS
ACCAAACAAATCCCTCTGTT+TGG 0.351675 7_2:-83105937 None:intergenic
CACAATTTCTAAATGCGGTT+GGG 0.353325 7_2:+83105234 Msa1082920:CDS
TCGATCTCGTGAACATTATC+TGG 0.354322 7_2:-83103326 None:intergenic
AATAGCACCAAATATCATTA+AGG 0.359655 7_2:+83105658 Msa1082920:CDS
AAATTGTTGCTGCGTTGTTT+TGG 0.366216 7_2:+83105477 Msa1082920:CDS
GAGGGATTTGTTTGGTTACA+TGG 0.381447 7_2:+83105944 Msa1082920:CDS
CATCACCCGAGCATTCGATT+TGG 0.396127 7_2:-83103211 None:intergenic
AGCGAGCGCACAATGCCAGC+TGG 0.403520 7_2:-83105907 None:intergenic
GTTCCCTACTACCCTCTTGC+AGG 0.410598 7_2:+83103158 Msa1082920:CDS
TGACGCTCTTATTATAATAG+TGG 0.412031 7_2:-83106027 None:intergenic
ACTAATGGGGTCTTCTTGGC+TGG 0.413894 7_2:-83103011 None:intergenic
CCAAACAAATCCCTCTGTTT+GGG 0.414734 7_2:-83105936 None:intergenic
GGCTCTGTCATTGTGCCAGC+TGG 0.417334 7_2:+83105892 Msa1082920:CDS
ACTAGAATTAAAGAGTTGAT+TGG 0.421271 7_2:-83102932 None:intergenic
CCCAAACAGAGGGATTTGTT+TGG 0.424828 7_2:+83105936 Msa1082920:CDS
GGATCTGTAAGAGATTGTTT+TGG 0.439401 7_2:-83105338 None:intergenic
ACCATGAATTTGATCAATGA+AGG 0.441387 7_2:-83105992 None:intergenic
TGAATGGGGACCACGTGAAC+TGG 0.453923 7_2:-83105868 None:intergenic
CAAAGAACACGAGCTTCACT+TGG 0.457265 7_2:-83105538 None:intergenic
TAATTTGGTGTAGGTGCAAA+CGG 0.459581 7_2:-83105779 None:intergenic
CATGTCATATTCCAAAAGTC+TGG 0.460515 7_2:+83106051 Msa1082920:three_prime_UTR
GTTCACGTGGTCCCCATTCA+AGG 0.466370 7_2:+83105871 Msa1082920:CDS
AACAAATCAACCGGCTGAAG+AGG 0.471582 7_2:+83105414 Msa1082920:CDS
AAAAGTTGGTGATGAGTTTG+AGG 0.472305 7_2:+83105754 Msa1082920:CDS
AGCTTGTAGCATGGCAATTG+AGG 0.475836 7_2:-83105362 None:intergenic
CACAATGACAGAGCCTTGAA+TGG 0.476977 7_2:-83105884 None:intergenic
ACAATGACAGAGCCTTGAAT+GGG 0.477089 7_2:-83105883 None:intergenic
AATGCTCGGGTGATGGTGTC+TGG 0.480453 7_2:+83103219 Msa1082920:CDS
TTATGTCTGAGTGGGGAGGT+TGG 0.482377 7_2:+83105813 Msa1082920:CDS
GGTTACATGGTGTGTGGAGG+AGG 0.482479 7_2:+83105957 Msa1082920:CDS
GCACAATTTCTAAATGCGGT+TGG 0.485952 7_2:+83105233 Msa1082920:CDS
AACGAACTCTGAAGGTAACT+TGG 0.491806 7_2:-83105708 None:intergenic
TACCCGCGGAACAAATCAAC+CGG 0.494219 7_2:+83105405 Msa1082920:CDS
AGGGAGTTTCAACAAGTAGC+TGG 0.495001 7_2:+83105434 Msa1082920:CDS
ATATGCTATGGCTGAATACC+AGG 0.497622 7_2:-83105193 None:intergenic
CAGTTTCCGTAGAAACCATT+GGG 0.497975 7_2:-83105593 None:intergenic
CAGGTGACACAATTTGGATG+TGG 0.498072 7_2:+83105155 Msa1082920:intron
AGAGTTCGTTAAGTACTTGA+AGG 0.498135 7_2:+83105721 Msa1082920:CDS
AGCCGGTTGATTTGTTCCGC+GGG 0.501795 7_2:-83105407 None:intergenic
CCGTAGAAACCATTGGGTAG+AGG 0.502506 7_2:-83105587 None:intergenic
AAGGGTGAACATATAAAAGT+TGG 0.507880 7_2:+83105740 Msa1082920:CDS
CTAGTCTATATACATTATCA+TGG 0.510013 7_2:+83102950 Msa1082920:exon
ACAGTTTCCGTAGAAACCAT+TGG 0.510842 7_2:-83105594 None:intergenic
GTGTCTCCAAATCGAATGCT+CGG 0.510997 7_2:+83103205 Msa1082920:CDS
GACATGGAGTCTATTCCATA+TGG 0.519087 7_2:+83103293 Msa1082920:CDS
TGCCACACTGGTTCGATGGT+GGG 0.525482 7_2:-83105281 None:intergenic
TGTCAATTTCTTTGATGACA+TGG 0.526407 7_2:+83103277 Msa1082920:CDS
CCTCTACCCAATGGTTTCTA+CGG 0.530414 7_2:+83105587 Msa1082920:CDS
GAGTTCGTTAAGTACTTGAA+GGG 0.532980 7_2:+83105722 Msa1082920:CDS
GTTGAAACTCCCTCTTCAGC+CGG 0.533444 7_2:-83105424 None:intergenic
ACAATTTCTAAATGCGGTTG+GGG 0.538479 7_2:+83105235 Msa1082920:CDS
GGCAATGCAGGTGCTTGAGA+GGG 0.540242 7_2:-83105317 None:intergenic
CCATCGAACCAGTGTGGCAC+AGG 0.541590 7_2:+83105285 Msa1082920:CDS
AATTTGGTGTAGGTGCAAAC+GGG 0.541912 7_2:-83105778 None:intergenic
TTGTTTGGTTACATGGTGTG+TGG 0.542109 7_2:+83105951 Msa1082920:CDS
CAAATCGAATGCTCGGGTGA+TGG 0.546018 7_2:+83103212 Msa1082920:CDS
TGGCAATGCAGGTGCTTGAG+AGG 0.546543 7_2:-83105318 None:intergenic
TTGATACCTGCATTTGCACA+AGG 0.550638 7_2:-83103361 None:intergenic
CGCTGCCTCTCCCAAACAGA+GGG 0.554901 7_2:+83105926 Msa1082920:CDS
CAAGGCCATCACATATGCTA+TGG 0.559190 7_2:-83105205 None:intergenic
TGTCTCCAAATCGAATGCTC+GGG 0.560237 7_2:+83103206 Msa1082920:CDS
CACACTGTTTATGTCTGAGT+GGG 0.561581 7_2:+83105805 Msa1082920:CDS
CATAGCATATGTGATGGCCT+TGG 0.562367 7_2:+83105206 Msa1082920:CDS
TTTGGTTACATGGTGTGTGG+AGG 0.562822 7_2:+83105954 Msa1082920:CDS
TTTCTTCCCGGTGACAACTA+CGG 0.567260 7_2:+83105616 Msa1082920:CDS
ACAAATCAACCGGCTGAAGA+GGG 0.571665 7_2:+83105415 Msa1082920:CDS
AAGAAGTTCCTGTGCCACAC+TGG 0.579986 7_2:-83105293 None:intergenic
GTGCCACACTGGTTCGATGG+TGG 0.580448 7_2:-83105282 None:intergenic
CAAATCCCTCTGTTTGGGAG+AGG 0.581922 7_2:-83105931 None:intergenic
CAGCCGGTTGATTTGTTCCG+CGG 0.581940 7_2:-83105408 None:intergenic
CAACGCAGCAACAATTTCAA+AGG 0.587043 7_2:-83105471 None:intergenic
TGACAACGTGGACTATCAGT+GGG 0.591110 7_2:+83105840 Msa1082920:CDS
TAGAAACCATTGGGTAGAGG+AGG 0.592332 7_2:-83105584 None:intergenic
CGTCCTGCAAGAGGGTAGTA+GGG 0.595097 7_2:-83103161 None:intergenic
ACTTTGCATGTGTTTAGACA+TGG 0.595433 7_2:+83103089 Msa1082920:CDS
GAATTTGATCAATGAAGGGA+AGG 0.607726 7_2:-83105987 None:intergenic
ACATGGTCCTAAAGCAGCAA+GGG 0.607905 7_2:+83103106 Msa1082920:CDS
GTGACACAATTTGGATGTGG+CGG 0.610534 7_2:+83105158 Msa1082920:CDS
CCATGAATTTGATCAATGAA+GGG 0.611998 7_2:-83105991 None:intergenic
CCTGTGCCACACTGGTTCGA+TGG 0.614749 7_2:-83105285 None:intergenic
AAGTACTTAACGAACTCTGA+AGG 0.616163 7_2:-83105716 None:intergenic
TGCTGCACAATTTCTAAATG+CGG 0.616691 7_2:+83105229 Msa1082920:CDS
ATGAGGCCGTAGTTGTCACC+GGG 0.617866 7_2:-83105622 None:intergenic
GTAGTAGGGAACGAGTGCTA+AGG 0.619352 7_2:-83103147 None:intergenic
GAAGCTGATCCAAGAAGCGA+AGG 0.619889 7_2:+83105685 Msa1082920:CDS
GATACCTGCATTTGCACAAG+GGG 0.620916 7_2:-83103359 None:intergenic
TTCAGCCATAGCATATGTGA+TGG 0.621973 7_2:+83105200 Msa1082920:CDS
TGGGTAGAGGAGGGTCTATG+AGG 0.623215 7_2:-83105574 None:intergenic
TCTTTGAGTCGTCCTGCAAG+AGG 0.623517 7_2:-83103170 None:intergenic
GACATGGTCCTAAAGCAGCA+AGG 0.625518 7_2:+83103105 Msa1082920:CDS
TGATACCTGCATTTGCACAA+GGG 0.625833 7_2:-83103360 None:intergenic
TTGACAACGTGGACTATCAG+TGG 0.627330 7_2:+83105839 Msa1082920:CDS
AGCACCAAATATCATTAAGG+TGG 0.631034 7_2:+83105661 Msa1082920:CDS
CTTTGAGTCGTCCTGCAAGA+GGG 0.631239 7_2:-83103169 None:intergenic
TCGCTGCCTCTCCCAAACAG+AGG 0.631587 7_2:+83105925 Msa1082920:CDS
AAAGAACACGAGCTTCACTT+GGG 0.633247 7_2:-83105537 None:intergenic
ATGGGGACCACGTGAACTGG+TGG 0.636640 7_2:-83105865 None:intergenic
AGAAACCATTGGGTAGAGGA+GGG 0.640266 7_2:-83105583 None:intergenic
ATAGACCCTCCTCTACCCAA+TGG 0.641614 7_2:+83105578 Msa1082920:CDS
TTGTAGCATGGCAATTGAGG+TGG 0.642367 7_2:-83105359 None:intergenic
GTGGGGTCCACCAGTTCACG+TGG 0.645647 7_2:+83105858 Msa1082920:CDS
GCGGTTGGGGAGCTAGCTAG+AGG 0.646349 7_2:+83105248 Msa1082920:CDS
CTGTTTATGTCTGAGTGGGG+AGG 0.647728 7_2:+83105809 Msa1082920:CDS
CATGTCTAACGTGACTAATG+GGG 0.648319 7_2:-83103024 None:intergenic
TATTCTAAGTGACTCGCATG+AGG 0.656537 7_2:-83105639 None:intergenic
CCACACTGTTTATGTCTGAG+TGG 0.662783 7_2:+83105804 Msa1082920:CDS
GAATGCTCTAGCTTGTAGCA+TGG 0.675559 7_2:-83105371 None:intergenic
AGTGTGGCGTAATTTGGTGT+AGG 0.676968 7_2:-83105788 None:intergenic
TTAGAAATTGTGCAGCACCA+AGG 0.683698 7_2:-83105223 None:intergenic
ACACTGTTTATGTCTGAGTG+GGG 0.685597 7_2:+83105806 Msa1082920:CDS
TGATGGTGTCTGGTATGTTG+AGG 0.692923 7_2:+83103229 Msa1082920:CDS
CAATGACAGAGCCTTGAATG+GGG 0.694035 7_2:-83105882 None:intergenic
CATTCGATTTGGAGACACTG+CGG 0.705487 7_2:-83103200 None:intergenic
AACCCACCATCGAACCAGTG+TGG 0.713587 7_2:+83105279 Msa1082920:CDS
ATACCTGCATTTGCACAAGG+GGG 0.741803 7_2:-83103358 None:intergenic
CCACTCAGACATAAACAGTG+TGG 0.746445 7_2:-83105804 None:intergenic
TTCTAACATAGACATACCCG+CGG 0.757317 7_2:+83105391 Msa1082920:CDS
GACAACGTGGACTATCAGTG+GGG 0.766248 7_2:+83105841 Msa1082920:CDS
GAGGTTGGGATTTGACAACG+TGG 0.822802 7_2:+83105828 Msa1082920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAATTTTCAGATTTTTT+TGG - chr7_2:83104466-83104485 None:intergenic 10.0%
!!! AAATTTATTTTCAGATTTTT+CGG - chr7_2:83104436-83104455 None:intergenic 10.0%
!!! TATAATTTTCAGATTTTTTT+CGG - chr7_2:83104467-83104486 None:intergenic 10.0%
!!! AAATTTATTTTCAGATTTTT+CGG - chr7_2:83104436-83104455 None:intergenic 10.0%
!!! AAATTTATTTTCAGATTTTT+CGG + chr7_2:83104436-83104455 Msa1082920:intron 10.0%
!!! AAATTTATTTTCAGATTTTT+CGG + chr7_2:83104436-83104455 Msa1082920:intron 10.0%
!!! AAAAAAAATTTGTTTGAAAA+TGG - chr7_2:83104727-83104746 None:intergenic 10.0%
!!! TTTTGATTTTTTTTTTTTGT+TGG + chr7_2:83104884-83104903 Msa1082920:intron 10.0%
!!! AAAAAAAATTTGTTCGAAAA+TGG + chr7_2:83103787-83103806 Msa1082920:intron 15.0%
!!! AAATTTTTTTCGAAAAACAA+TGG + chr7_2:83104201-83104220 Msa1082920:intron 15.0%
!!! TCAAACAAATTTTTTTTTAC+AGG + chr7_2:83104730-83104749 Msa1082920:intron 15.0%
!!! CAAACAAATTTTTTTTTACA+GGG + chr7_2:83104731-83104750 Msa1082920:intron 15.0%
!!! ATCATTGATCTCAATATTTT+TGG - chr7_2:83103550-83103569 None:intergenic 20.0%
!! CAATGATAAAATAAACAAAC+TGG + chr7_2:83103563-83103582 Msa1082920:intron 20.0%
!! AAGCCAATAAATAATAATTG+TGG - chr7_2:83103686-83103705 None:intergenic 20.0%
!!! ATTCAAACTTTTTTTTGACA+GGG - chr7_2:83104759-83104778 None:intergenic 20.0%
!!! AATTCAAACTTTTTTTTGAC+AGG - chr7_2:83104758-83104777 None:intergenic 20.0%
!!! CGAACAAATTTTTTTTTACT+GGG - chr7_2:83103783-83103802 None:intergenic 20.0%
!!! TCGAACAAATTTTTTTTTAC+TGG - chr7_2:83103784-83103803 None:intergenic 20.0%
!!! AATTCAAACTTTTTTTTGAC+AGG + chr7_2:83104758-83104777 Msa1082920:intron 20.0%
!!! ATTCAAACTTTTTTTTGACA+GGG + chr7_2:83104759-83104778 Msa1082920:intron 20.0%
!! CACATTTCACATAATAAATA+AGG - chr7_2:83104834-83104853 None:intergenic 20.0%
!! AAAAATCAAAACTATGCAAT+TGG - chr7_2:83104875-83104894 None:intergenic 20.0%
!!! ATTTTTTTTTTTTGTTGGAG+TGG + chr7_2:83104889-83104908 Msa1082920:intron 20.0%
!! TTAAGAACAAGATGTTATTA+TGG + chr7_2:83106085-83106104 Msa1082920:three_prime_UTR 20.0%
!! ACTAGAATTAAAGAGTTGAT+TGG - chr7_2:83102935-83102954 None:intergenic 25.0%
! CTAGTCTATATACATTATCA+TGG + chr7_2:83102950-83102969 Msa1082920:exon 25.0%
! ATTTAGTATTGCATAGCTTA+TGG - chr7_2:83103454-83103473 None:intergenic 25.0%
! ATTTAGTATTGCATAGCTTA+TGG - chr7_2:83103454-83103473 None:intergenic 25.0%
! TGATAAAATAAACAAACTGG+AGG + chr7_2:83103566-83103585 Msa1082920:intron 25.0%
! GCACCACAATTATTATTTAT+TGG + chr7_2:83103680-83103699 Msa1082920:intron 25.0%
! AATAGCACCAAATATCATTA+AGG + chr7_2:83105658-83105677 Msa1082920:CDS 25.0%
!!! ACTACATTTTAGTTTCTTGA+CGG - chr7_2:83106134-83106153 None:intergenic 25.0%
!!! CTAACATAGCATTTTAGAAC+AGG - chr7_2:83103068-83103087 None:intergenic 30.0%
! TGTCAATTTCTTTGATGACA+TGG + chr7_2:83103277-83103296 Msa1082920:CDS 30.0%
!! TTTGATTCTCTGAAGTACAA+CGG - chr7_2:83103607-83103626 None:intergenic 30.0%
GTGAAATGTGAATGTATATC+TGG + chr7_2:83104844-83104863 Msa1082920:intron 30.0%
! GTTAGACTAAACATTTTTCG+TGG - chr7_2:83104975-83104994 None:intergenic 30.0%
!!! CCTCAAGGTACATTTTTTAA+AGG - chr7_2:83105096-83105115 None:intergenic 30.0%
! CCTTTAAAAAATGTACCTTG+AGG + chr7_2:83105093-83105112 Msa1082920:intron 30.0%
! GGTATTGGGATCAAAATTAA+TGG - chr7_2:83105519-83105538 None:intergenic 30.0%
TTCACCACCTTAATGATATT+TGG - chr7_2:83105668-83105687 None:intergenic 30.0%
AAGGGTGAACATATAAAAGT+TGG + chr7_2:83105740-83105759 Msa1082920:CDS 30.0%
CCATGAATTTGATCAATGAA+GGG - chr7_2:83105994-83106013 None:intergenic 30.0%
ACCATGAATTTGATCAATGA+AGG - chr7_2:83105995-83106014 None:intergenic 30.0%
TGACGCTCTTATTATAATAG+TGG - chr7_2:83106030-83106049 None:intergenic 30.0%
ACATGTCTAACGTGACTAAT+GGG - chr7_2:83103028-83103047 None:intergenic 35.0%
ACTTTGCATGTGTTTAGACA+TGG + chr7_2:83103089-83103108 Msa1082920:CDS 35.0%
TCTGGAAAAAGACTACCATA+TGG - chr7_2:83103311-83103330 None:intergenic 35.0%
CAACTTACAAACTTCATGCT+AGG + chr7_2:83103381-83103400 Msa1082920:intron 35.0%
! GATTTTCGTCCCTGTAATAT+AGG + chr7_2:83103712-83103731 Msa1082920:intron 35.0%
CAAAACACGCCTATATTACA+GGG - chr7_2:83104790-83104809 None:intergenic 35.0%
TCAAAACACGCCTATATTAC+AGG - chr7_2:83104789-83104808 None:intergenic 35.0%
ATTTGTTCGAAAATGGTCTC+TGG + chr7_2:83103794-83103813 Msa1082920:intron 35.0%
ATTTGTTTGAAAATGGTCCC+TGG - chr7_2:83104720-83104739 None:intergenic 35.0%
TCAAAACACGCCTATATTAC+AGG + chr7_2:83104789-83104808 Msa1082920:intron 35.0%
CAAAACACGCCTATATTACA+GGG + chr7_2:83104790-83104809 Msa1082920:intron 35.0%
! GATTTTCGTCCCTGTAATAT+AGG - chr7_2:83103712-83103731 None:intergenic 35.0%
ATGTGAATGTATATCTGGTG+AGG + chr7_2:83104849-83104868 Msa1082920:intron 35.0%
! AACATTTTTCGTGGTTACCT+GGG - chr7_2:83104966-83104985 None:intergenic 35.0%
! AAACATTTTTCGTGGTTACC+TGG - chr7_2:83104967-83104986 None:intergenic 35.0%
! CATGAGAGAATTCTTGTTTC+AGG + chr7_2:83105136-83105155 Msa1082920:intron 35.0%
! TTGTTTCAGGTGACACAATT+TGG + chr7_2:83105149-83105168 Msa1082920:intron 35.0%
TGCTGCACAATTTCTAAATG+CGG + chr7_2:83105229-83105248 Msa1082920:CDS 35.0%
CACAATTTCTAAATGCGGTT+GGG + chr7_2:83105234-83105253 Msa1082920:CDS 35.0%
ACAATTTCTAAATGCGGTTG+GGG + chr7_2:83105235-83105254 Msa1082920:CDS 35.0%
! GGATCTGTAAGAGATTGTTT+TGG - chr7_2:83105341-83105360 None:intergenic 35.0%
! AAATTGTTGCTGCGTTGTTT+TGG + chr7_2:83105477-83105496 Msa1082920:CDS 35.0%
AGCACCAAATATCATTAAGG+TGG + chr7_2:83105661-83105680 Msa1082920:CDS 35.0%
AAGTACTTAACGAACTCTGA+AGG - chr7_2:83105719-83105738 None:intergenic 35.0%
AGAGTTCGTTAAGTACTTGA+AGG + chr7_2:83105721-83105740 Msa1082920:CDS 35.0%
GAGTTCGTTAAGTACTTGAA+GGG + chr7_2:83105722-83105741 Msa1082920:CDS 35.0%
!! AAAAGTTGGTGATGAGTTTG+AGG + chr7_2:83105754-83105773 Msa1082920:CDS 35.0%
!! TAATTTGGTGTAGGTGCAAA+CGG - chr7_2:83105782-83105801 None:intergenic 35.0%
ATAAACAGTGTGGCGTAATT+TGG - chr7_2:83105797-83105816 None:intergenic 35.0%
GAATTTGATCAATGAAGGGA+AGG - chr7_2:83105990-83106009 None:intergenic 35.0%
CCCTTCATTGATCAAATTCA+TGG + chr7_2:83105991-83106010 Msa1082920:CDS 35.0%
!!! CAGACTTTTGGAATATGACA+TGG - chr7_2:83106053-83106072 None:intergenic 35.0%
CATGTCATATTCCAAAAGTC+TGG + chr7_2:83106051-83106070 Msa1082920:three_prime_UTR 35.0%
! GCATAAAAAAGCCAGACTTT+TGG - chr7_2:83106065-83106084 None:intergenic 35.0%
CATGTCTAACGTGACTAATG+GGG - chr7_2:83103027-83103046 None:intergenic 40.0%
GACATGTCTAACGTGACTAA+TGG - chr7_2:83103029-83103048 None:intergenic 40.0%
GACATGGAGTCTATTCCATA+TGG + chr7_2:83103293-83103312 Msa1082920:CDS 40.0%
TCGATCTCGTGAACATTATC+TGG - chr7_2:83103329-83103348 None:intergenic 40.0%
TGATACCTGCATTTGCACAA+GGG - chr7_2:83103363-83103382 None:intergenic 40.0%
TTGATACCTGCATTTGCACA+AGG - chr7_2:83103364-83103383 None:intergenic 40.0%
ACAATCTAACGATTGCTCGT+TGG + chr7_2:83104993-83105012 Msa1082920:intron 40.0%
ACATGAGTAAACGATCCTCA+AGG - chr7_2:83105111-83105130 None:intergenic 40.0%
GAGGATCGTTTACTCATGTT+TGG + chr7_2:83105112-83105131 Msa1082920:intron 40.0%
ATATGCTATGGCTGAATACC+AGG - chr7_2:83105196-83105215 None:intergenic 40.0%
TTCAGCCATAGCATATGTGA+TGG + chr7_2:83105200-83105219 Msa1082920:CDS 40.0%
TTAGAAATTGTGCAGCACCA+AGG - chr7_2:83105226-83105245 None:intergenic 40.0%
GCACAATTTCTAAATGCGGT+TGG + chr7_2:83105233-83105252 Msa1082920:CDS 40.0%
!!! AGAGATTGTTTTGGCAATGC+AGG - chr7_2:83105332-83105351 None:intergenic 40.0%
TTCTAACATAGACATACCCG+CGG + chr7_2:83105391-83105410 Msa1082920:CDS 40.0%
CAACGCAGCAACAATTTCAA+AGG - chr7_2:83105474-83105493 None:intergenic 40.0%
AAAGAACACGAGCTTCACTT+GGG - chr7_2:83105540-83105559 None:intergenic 40.0%
CAGTTTCCGTAGAAACCATT+GGG - chr7_2:83105596-83105615 None:intergenic 40.0%
ACAGTTTCCGTAGAAACCAT+TGG - chr7_2:83105597-83105616 None:intergenic 40.0%
TATTCTAAGTGACTCGCATG+AGG - chr7_2:83105642-83105661 None:intergenic 40.0%
! AACGAACTCTGAAGGTAACT+TGG - chr7_2:83105711-83105730 None:intergenic 40.0%
!! AATTTGGTGTAGGTGCAAAC+GGG - chr7_2:83105781-83105800 None:intergenic 40.0%
CACACTGTTTATGTCTGAGT+GGG + chr7_2:83105805-83105824 Msa1082920:CDS 40.0%
ACACTGTTTATGTCTGAGTG+GGG + chr7_2:83105806-83105825 Msa1082920:CDS 40.0%
ACAATGACAGAGCCTTGAAT+GGG - chr7_2:83105886-83105905 None:intergenic 40.0%
CCAAACAAATCCCTCTGTTT+GGG - chr7_2:83105939-83105958 None:intergenic 40.0%
ACCAAACAAATCCCTCTGTT+TGG - chr7_2:83105940-83105959 None:intergenic 40.0%
! GAGGGATTTGTTTGGTTACA+TGG + chr7_2:83105944-83105963 Msa1082920:CDS 40.0%
TTGTTTGGTTACATGGTGTG+TGG + chr7_2:83105951-83105970 Msa1082920:CDS 40.0%
ACATGGTCCTAAAGCAGCAA+GGG + chr7_2:83103106-83103125 Msa1082920:CDS 45.0%
!! CTTATGACCCTTGCTGCTTT+AGG - chr7_2:83103116-83103135 None:intergenic 45.0%
!! CATTCGATTTGGAGACACTG+CGG - chr7_2:83103203-83103222 None:intergenic 45.0%
GTGTCTCCAAATCGAATGCT+CGG + chr7_2:83103205-83103224 Msa1082920:CDS 45.0%
TGTCTCCAAATCGAATGCTC+GGG + chr7_2:83103206-83103225 Msa1082920:CDS 45.0%
! TGATGGTGTCTGGTATGTTG+AGG + chr7_2:83103229-83103248 Msa1082920:CDS 45.0%
ATACCTGCATTTGCACAAGG+GGG - chr7_2:83103361-83103380 None:intergenic 45.0%
GATACCTGCATTTGCACAAG+GGG - chr7_2:83103362-83103381 None:intergenic 45.0%
!!! CAGTTGACTTGGCATGGTTT+TGG - chr7_2:83104687-83104706 None:intergenic 45.0%
!! ACTGTTCAGTTGACTTGGCA+TGG - chr7_2:83104693-83104712 None:intergenic 45.0%
ATGCCAAGTCAACTGAACAG+TGG + chr7_2:83104692-83104711 Msa1082920:intron 45.0%
TGCCAAGTCAACTGAACAGT+GGG + chr7_2:83104693-83104712 Msa1082920:intron 45.0%
GTTTGTGTGTGTGGGTCTTT+AGG - chr7_2:83104924-83104943 None:intergenic 45.0%
AAAGACCCACACACACAAAC+AGG + chr7_2:83104924-83104943 Msa1082920:intron 45.0%
GATCTCCTGTTTGTGTGTGT+GGG - chr7_2:83104932-83104951 None:intergenic 45.0%
GGTTACCTGGGTTCGAAATT+GGG - chr7_2:83104954-83104973 None:intergenic 45.0%
TGGTTACCTGGGTTCGAAAT+TGG - chr7_2:83104955-83104974 None:intergenic 45.0%
TAACGATTGCTCGTTGGACT+AGG + chr7_2:83104999-83105018 Msa1082920:intron 45.0%
CAGGTGACACAATTTGGATG+TGG + chr7_2:83105155-83105174 Msa1082920:intron 45.0%
GTGACACAATTTGGATGTGG+CGG + chr7_2:83105158-83105177 Msa1082920:CDS 45.0%
CAAGGCCATCACATATGCTA+TGG - chr7_2:83105208-83105227 None:intergenic 45.0%
CATAGCATATGTGATGGCCT+TGG + chr7_2:83105206-83105225 Msa1082920:CDS 45.0%
TTGTAGCATGGCAATTGAGG+TGG - chr7_2:83105362-83105381 None:intergenic 45.0%
AGCTTGTAGCATGGCAATTG+AGG - chr7_2:83105365-83105384 None:intergenic 45.0%
! GAATGCTCTAGCTTGTAGCA+TGG - chr7_2:83105374-83105393 None:intergenic 45.0%
AACAAATCAACCGGCTGAAG+AGG + chr7_2:83105414-83105433 Msa1082920:CDS 45.0%
ACAAATCAACCGGCTGAAGA+GGG + chr7_2:83105415-83105434 Msa1082920:CDS 45.0%
AGGGAGTTTCAACAAGTAGC+TGG + chr7_2:83105434-83105453 Msa1082920:CDS 45.0%
ACGAGCTTCACTTGGGTATT+GGG - chr7_2:83105533-83105552 None:intergenic 45.0%
CAAAGAACACGAGCTTCACT+TGG - chr7_2:83105541-83105560 None:intergenic 45.0%
AGAAACCATTGGGTAGAGGA+GGG - chr7_2:83105586-83105605 None:intergenic 45.0%
TAGAAACCATTGGGTAGAGG+AGG - chr7_2:83105587-83105606 None:intergenic 45.0%
CCTCTACCCAATGGTTTCTA+CGG + chr7_2:83105587-83105606 Msa1082920:CDS 45.0%
! CTACGGAAACTGTTTCTTCC+CGG + chr7_2:83105604-83105623 Msa1082920:CDS 45.0%
TTTCTTCCCGGTGACAACTA+CGG + chr7_2:83105616-83105635 Msa1082920:CDS 45.0%
!! AGTGTGGCGTAATTTGGTGT+AGG - chr7_2:83105791-83105810 None:intergenic 45.0%
CCACTCAGACATAAACAGTG+TGG - chr7_2:83105807-83105826 None:intergenic 45.0%
CCACACTGTTTATGTCTGAG+TGG + chr7_2:83105804-83105823 Msa1082920:CDS 45.0%
! TTGACAACGTGGACTATCAG+TGG + chr7_2:83105839-83105858 Msa1082920:CDS 45.0%
! TGACAACGTGGACTATCAGT+GGG + chr7_2:83105840-83105859 Msa1082920:CDS 45.0%
CAATGACAGAGCCTTGAATG+GGG - chr7_2:83105885-83105904 None:intergenic 45.0%
CACAATGACAGAGCCTTGAA+TGG - chr7_2:83105887-83105906 None:intergenic 45.0%
! CCCAAACAGAGGGATTTGTT+TGG + chr7_2:83105936-83105955 Msa1082920:CDS 45.0%
TTTGGTTACATGGTGTGTGG+AGG + chr7_2:83105954-83105973 Msa1082920:CDS 45.0%
!! TAAACATTAAAATTTAATAA+TGG + chr7_2:83103633-83103652 Msa1082920:intron 5.0%
!!! AATTTTATTTTTTAATTACA+TGG - chr7_2:83103897-83103916 None:intergenic 5.0%
!!! TTTTAAAATTTAATATTATG+TGG + chr7_2:83104606-83104625 Msa1082920:intron 5.0%
ACTAATGGGGTCTTCTTGGC+TGG - chr7_2:83103014-83103033 None:intergenic 50.0%
CGTGACTAATGGGGTCTTCT+TGG - chr7_2:83103018-83103037 None:intergenic 50.0%
GACATGGTCCTAAAGCAGCA+AGG + chr7_2:83103105-83103124 Msa1082920:CDS 50.0%
GTAGTAGGGAACGAGTGCTA+AGG - chr7_2:83103150-83103169 None:intergenic 50.0%
CTTTGAGTCGTCCTGCAAGA+GGG - chr7_2:83103172-83103191 None:intergenic 50.0%
TCTTTGAGTCGTCCTGCAAG+AGG - chr7_2:83103173-83103192 None:intergenic 50.0%
CATCACCCGAGCATTCGATT+TGG - chr7_2:83103214-83103233 None:intergenic 50.0%
CAAATCGAATGCTCGGGTGA+TGG + chr7_2:83103212-83103231 Msa1082920:CDS 50.0%
TGCCAAGTCAGCTGAACAGT+GGG - chr7_2:83103821-83103840 None:intergenic 50.0%
ATGCCAAGTCAGCTGAACAG+TGG - chr7_2:83103822-83103841 None:intergenic 50.0%
!! ACTGTTCAGCTGACTTGGCA+TGG + chr7_2:83103821-83103840 Msa1082920:intron 50.0%
! ACTGTGCAACTTTTGCCACG+TGG + chr7_2:83103867-83103886 Msa1082920:intron 50.0%
TAATTACATGGACCGCCACG+TGG - chr7_2:83103885-83103904 None:intergenic 50.0%
! ACTGTGCAACTTTTGCCACG+TGG - chr7_2:83103867-83103886 None:intergenic 50.0%
!!! ACTTGGCATGGTTTTGGCCA+CGG - chr7_2:83104681-83104700 None:intergenic 50.0%
GCCAAGTCAACTGAACAGTG+GGG + chr7_2:83104694-83104713 Msa1082920:intron 50.0%
TGTGTGTGTGGGTCTTTAGG+TGG - chr7_2:83104921-83104940 None:intergenic 50.0%
GGATCTCCTGTTTGTGTGTG+TGG - chr7_2:83104933-83104952 None:intergenic 50.0%
GAGATCCCAATTTCGAACCC+AGG + chr7_2:83104946-83104965 Msa1082920:intron 50.0%
!! GGATGTGGCGGTTTTGTGAT+AGG + chr7_2:83105170-83105189 Msa1082920:CDS 50.0%
AAGAAGTTCCTGTGCCACAC+TGG - chr7_2:83105296-83105315 None:intergenic 50.0%
TACCCGCGGAACAAATCAAC+CGG + chr7_2:83105405-83105424 Msa1082920:CDS 50.0%
GTTGAAACTCCCTCTTCAGC+CGG - chr7_2:83105427-83105446 None:intergenic 50.0%
CACGAGCTTCACTTGGGTAT+TGG - chr7_2:83105534-83105553 None:intergenic 50.0%
ATAGACCCTCCTCTACCCAA+TGG + chr7_2:83105578-83105597 Msa1082920:CDS 50.0%
CCGTAGAAACCATTGGGTAG+AGG - chr7_2:83105590-83105609 None:intergenic 50.0%
GAAGCTGATCCAAGAAGCGA+AGG + chr7_2:83105685-83105704 Msa1082920:CDS 50.0%
! GTAACTTGGCCTTCGCTTCT+TGG - chr7_2:83105697-83105716 None:intergenic 50.0%
CTGTTTATGTCTGAGTGGGG+AGG + chr7_2:83105809-83105828 Msa1082920:CDS 50.0%
TTATGTCTGAGTGGGGAGGT+TGG + chr7_2:83105813-83105832 Msa1082920:CDS 50.0%
TATGTCTGAGTGGGGAGGTT+GGG + chr7_2:83105814-83105833 Msa1082920:CDS 50.0%
GAGGTTGGGATTTGACAACG+TGG + chr7_2:83105828-83105847 Msa1082920:CDS 50.0%
! GACAACGTGGACTATCAGTG+GGG + chr7_2:83105841-83105860 Msa1082920:CDS 50.0%
CAAATCCCTCTGTTTGGGAG+AGG - chr7_2:83105934-83105953 None:intergenic 50.0%
GTTCCCTACTACCCTCTTGC+AGG + chr7_2:83103158-83103177 Msa1082920:CDS 55.0%
CGTCCTGCAAGAGGGTAGTA+GGG - chr7_2:83103164-83103183 None:intergenic 55.0%
TCGTCCTGCAAGAGGGTAGT+AGG - chr7_2:83103165-83103184 None:intergenic 55.0%
! AATGCTCGGGTGATGGTGTC+TGG + chr7_2:83103219-83103238 Msa1082920:CDS 55.0%
GCCAAGTCAGCTGAACAGTG+GGG - chr7_2:83103820-83103839 None:intergenic 55.0%
TTGGCATGGTATTCGCCACG+TGG + chr7_2:83103835-83103854 Msa1082920:intron 55.0%
! GTGCAACTTTTGCCACGTGG+CGG + chr7_2:83103870-83103889 Msa1082920:intron 55.0%
!!! TTGGCATGGTTTTGGCCACG+GGG - chr7_2:83104679-83104698 None:intergenic 55.0%
!!! CTTGGCATGGTTTTGGCCAC+GGG - chr7_2:83104680-83104699 None:intergenic 55.0%
GCCCCACTGTTCAGTTGACT+TGG - chr7_2:83104698-83104717 None:intergenic 55.0%
TCAACTGAACAGTGGGGCCA+GGG + chr7_2:83104700-83104719 Msa1082920:intron 55.0%
!! TGGCGGTTTTGTGATAGGCC+TGG + chr7_2:83105175-83105194 Msa1082920:CDS 55.0%
AACCCACCATCGAACCAGTG+TGG + chr7_2:83105279-83105298 Msa1082920:CDS 55.0%
!! TGCCACACTGGTTCGATGGT+GGG - chr7_2:83105284-83105303 None:intergenic 55.0%
GGCAATGCAGGTGCTTGAGA+GGG - chr7_2:83105320-83105339 None:intergenic 55.0%
TGGCAATGCAGGTGCTTGAG+AGG - chr7_2:83105321-83105340 None:intergenic 55.0%
!! AGCCGGTTGATTTGTTCCGC+GGG - chr7_2:83105410-83105429 None:intergenic 55.0%
!! CAGCCGGTTGATTTGTTCCG+CGG - chr7_2:83105411-83105430 None:intergenic 55.0%
TGGGTAGAGGAGGGTCTATG+AGG - chr7_2:83105577-83105596 None:intergenic 55.0%
ATGAGGCCGTAGTTGTCACC+GGG - chr7_2:83105625-83105644 None:intergenic 55.0%
CATGAGGCCGTAGTTGTCAC+CGG - chr7_2:83105626-83105645 None:intergenic 55.0%
TGAATGGGGACCACGTGAAC+TGG - chr7_2:83105871-83105890 None:intergenic 55.0%
GTTCACGTGGTCCCCATTCA+AGG + chr7_2:83105871-83105890 Msa1082920:CDS 55.0%
GGTTACATGGTGTGTGGAGG+AGG + chr7_2:83105957-83105976 Msa1082920:CDS 55.0%
CGACCCCCTTGTGCAAATGC+AGG + chr7_2:83103355-83103374 Msa1082920:CDS 60.0%
GCCCCACTGTTCAGCTGACT+TGG + chr7_2:83103816-83103835 Msa1082920:intron 60.0%
CACAGTCAGCAACTGCCACG+TGG - chr7_2:83103853-83103872 None:intergenic 60.0%
GTCAACTGAACAGTGGGGCC+AGG + chr7_2:83104699-83104718 Msa1082920:intron 60.0%
!! GTGCCACACTGGTTCGATGG+TGG - chr7_2:83105285-83105304 None:intergenic 60.0%
!! CCTGTGCCACACTGGTTCGA+TGG - chr7_2:83105288-83105307 None:intergenic 60.0%
CCATCGAACCAGTGTGGCAC+AGG + chr7_2:83105285-83105304 Msa1082920:CDS 60.0%
ATGGGGACCACGTGAACTGG+TGG - chr7_2:83105868-83105887 None:intergenic 60.0%
GGCTCTGTCATTGTGCCAGC+TGG + chr7_2:83105892-83105911 Msa1082920:CDS 60.0%
TCGCTGCCTCTCCCAAACAG+AGG + chr7_2:83105925-83105944 Msa1082920:CDS 60.0%
CGCTGCCTCTCCCAAACAGA+GGG + chr7_2:83105926-83105945 Msa1082920:CDS 60.0%
!! TTTGCCACGTGGCGCTGACG+TGG - chr7_2:83104636-83104655 None:intergenic 65.0%
CACAGTCAGCAACTGCCCCG+TGG + chr7_2:83104661-83104680 Msa1082920:intron 65.0%
GCGGTTGGGGAGCTAGCTAG+AGG + chr7_2:83105248-83105267 Msa1082920:CDS 65.0%
GTGGGGTCCACCAGTTCACG+TGG + chr7_2:83105858-83105877 Msa1082920:CDS 65.0%
AGCGAGCGCACAATGCCAGC+TGG - chr7_2:83105910-83105929 None:intergenic 65.0%
CACGCCACGTCAGCGCCACG+TGG + chr7_2:83104629-83104648 Msa1082920:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 83102900 83106219 83102900 ID=Msa1082920;Name=Msa1082920
chr7_2 mRNA 83102900 83106219 83102900 ID=Msa1082920-mRNA-1;Parent=Msa1082920;Name=Msa1082920-mRNA-1;_AED=0.02;_eAED=0.02;_QI=69|1|1|1|1|1|2|198|423
chr7_2 exon 83102900 83103376 83102900 ID=Msa1082920-mRNA-1:exon:21749;Parent=Msa1082920-mRNA-1
chr7_2 exon 83105158 83106219 83105158 ID=Msa1082920-mRNA-1:exon:21750;Parent=Msa1082920-mRNA-1
chr7_2 five_prime_UTR 83102900 83102968 83102900 ID=Msa1082920-mRNA-1:five_prime_utr;Parent=Msa1082920-mRNA-1
chr7_2 CDS 83102969 83103376 83102969 ID=Msa1082920-mRNA-1:cds;Parent=Msa1082920-mRNA-1
chr7_2 CDS 83105158 83106021 83105158 ID=Msa1082920-mRNA-1:cds;Parent=Msa1082920-mRNA-1
chr7_2 three_prime_UTR 83106022 83106219 83106022 ID=Msa1082920-mRNA-1:three_prime_utr;Parent=Msa1082920-mRNA-1
Gene Sequence

>Msa1082920

ATGGAAATATCAGTGATTAGAACAAAACGAGACTTAGTTAAACCAGCCAAGAAGACCCCATTAGTCACGTTAGACATGTCAGTAATCGACAAACTACCTGTTCTAAAATGCTATGTTAGAACTTTGCATGTGTTTAGACATGGTCCTAAAGCAGCAAGGGTCATAAGAGAAGCATTGTCCTTAGCACTCGTTCCCTACTACCCTCTTGCAGGACGACTCAAAGAGTCTAATCCGCAGTGTCTCCAAATCGAATGCTCGGGTGATGGTGTCTGGTATGTTGAGGCATCAACTAATTGCACACTTGACTCTGTCAATTTCTTTGATGACATGGAGTCTATTCCATATGGTAGTCTTTTTCCAGATAATGTTCACGAGATCGAACACATCGACCCCCTTGTGCAAATGCAGGTGACACAATTTGGATGTGGCGGTTTTGTGATAGGCCTGGTATTCAGCCATAGCATATGTGATGGCCTTGGTGCTGCACAATTTCTAAATGCGGTTGGGGAGCTAGCTAGAGGACTTGACAAACCCACCATCGAACCAGTGTGGCACAGGAACTTCTTTCCCTCTCAAGCACCTGCATTGCCAAAACAATCTCTTACAGATCCACCTCAATTGCCATGCTACAAGCTAGAGCATTCTAACATAGACATACCCGCGGAACAAATCAACCGGCTGAAGAGGGAGTTTCAACAAGTAGCTGGAAGAAGTTGTTCTACCTTTGAAATTGTTGCTGCGTTGTTTTGGAGCAGCAGAACAAGAGCCATTAATTTTGATCCCAATACCCAAGTGAAGCTCGTGTTCTTTGCAAATTGTCGACACCTCATAGACCCTCCTCTACCCAATGGTTTCTACGGAAACTGTTTCTTCCCGGTGACAACTACGGCCTCATGCGAGTCACTTAGAATAGCACCAAATATCATTAAGGTGGTGAAGCTGATCCAAGAAGCGAAGGCCAAGTTACCTTCAGAGTTCGTTAAGTACTTGAAGGGTGAACATATAAAAGTTGGTGATGAGTTTGAGGACCCGTTTGCACCTACACCAAATTACGCCACACTGTTTATGTCTGAGTGGGGAGGTTGGGATTTGACAACGTGGACTATCAGTGGGGTCCACCAGTTCACGTGGTCCCCATTCAAGGCTCTGTCATTGTGCCAGCTGGCATTGTGCGCTCGCTGCCTCTCCCAAACAGAGGGATTTGTTTGGTTACATGGTGTGTGGAGGAGGCACATCGCCTTCCCTTCATTGATCAAATTCATGGTCTTATAA
Protein sequence

>Msa1082920

MEISVIRTKRDLVKPAKKTPLVTLDMSVIDKLPVLKCYVRTLHVFRHGPKAARVIREALSLALVPYYPLAGRLKESNPQCLQIECSGDGVWYVEASTNCTLDSVNFFDDMESIPYGSLFPDNVHEIEHIDPLVQMQVTQFGCGGFVIGLVFSHSICDGLGAAQFLNAVGELARGLDKPTIEPVWHRNFFPSQAPALPKQSLTDPPQLPCYKLEHSNIDIPAEQINRLKREFQQVAGRSCSTFEIVAALFWSSRTRAINFDPNTQVKLVFFANCRHLIDPPLPNGFYGNCFFPVTTTASCESLRIAPNIIKVVKLIQEAKAKLPSEFVKYLKGEHIKVGDEFEDPFAPTPNYATLFMSEWGGWDLTTWTISGVHQFTWSPFKALSLCQLALCARCLSQTEGFVWLHGVWRRHIAFPSLIKFMVL*