AlfalfaGEDB | Msa0228680

M. sativa cultivar zhongmu-4 / Msa0228680

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0228680	XP_013466412.1	93.130	131	9	0	121	251	120	250	3.08e-71	229

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0228680	sp\|Q8LBX7\|TED6_ARATH	39.394	99	57	2	108	203	2	100	1.26e-14	71.2

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0228680	A0A072VGB0	93.130	131	9	0	121	251	120	250	1.47e-71	229

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0039640	Msa0228680	0.852223	5.315883e-61	-8.615850e-47
Msa0087280	Msa0228680	0.843645	1.233625e-58	-8.615850e-47
Msa0104730	Msa0228680	0.911436	6.096640e-83	-8.615850e-47
Msa0133920	Msa0228680	0.844764	6.176453e-59	-8.615850e-47
Msa0140640	Msa0228680	0.804241	2.374456e-49	-8.615850e-47
Msa0154760	Msa0228680	0.849721	2.696440e-60	-8.615850e-47
Msa0228680	Msa0623050	0.940581	1.826930e-100	-8.615850e-47
Msa0228680	Msa0660890	0.817162	3.805162e-52	-8.615850e-47
Msa0228680	Msa0716710	0.807061	6.076516e-50	-8.615850e-47
Msa0228680	Msa0757410	0.824957	6.091553e-54	-8.615850e-47
Msa0228680	Msa0799170	0.878211	3.373683e-69	-8.615850e-47
Msa0228680	Msa0837610	0.875290	3.463222e-68	-8.615850e-47
Msa0228680	Msa1040610	0.808226	3.436267e-50	-8.615850e-47
Msa0228680	Msa1082920	0.819770	9.755982e-53	-8.615850e-47
Msa0228680	Msa1127570	0.802318	5.938340e-49	-8.615850e-47
Msa0228680	Msa1127620	0.824547	7.608936e-54	-8.615850e-47
Msa0228680	Msa1191550	0.821354	4.222090e-53	-8.615850e-47
Msa0228680	Msa1257740	0.855289	6.972962e-62	-8.615850e-47
Msa0228680	Msa1257760	0.801686	8.009237e-49	-8.615850e-47
Msa0228680	Msa1257830	0.850010	2.238253e-60	-8.615850e-47
Msa0228680	Msa1270840	0.806863	6.690844e-50	-8.615850e-47
Msa0228680	Msa1329140	0.853348	2.535885e-61	-8.615850e-47
Msa0228680	Msa1329190	0.854146	1.494796e-61	-8.615850e-47
Msa0228680	Msa1329220	0.864831	9.161104e-65	-8.615850e-47
Msa0228680	Msa1369030	0.813519	2.457217e-51	-8.615850e-47
Msa0228680	Msa1369410	0.812876	3.400705e-51	-8.615850e-47
Msa0228680	Msa1429010	0.810821	9.527105e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0228680	MtrunA17_Chr1g0159311	93.130	131	9	0	121	251	120	250	2.83e-75	229
Msa0228680	MtrunA17_Chr1g0147361	58.696	92	36	2	123	213	6	96	2.34e-34	122
Msa0228680	MtrunA17_Chr1g0147381	61.628	86	30	2	134	217	21	105	9.68e-31	115
Msa0228680	MtrunA17_Chr1g0147381	50.000	96	37	3	156	251	216	300	7.59e-20	86.7
Msa0228680	MtrunA17_Chr1g0147381	59.677	62	24	1	156	217	102	162	1.44e-15	74.7
Msa0228680	MtrunA17_Chr1g0147381	59.677	62	24	1	156	217	159	219	1.44e-15	74.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0228680	AT1G43790.1	39.394	99	57	2	108	203	2	100	1.28e-15	71.2

Find 87 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTAGAAATTTGGTTGATTTA+AGG	0.184346	2_2:-10364	None:intergenic
AATATTGTGCCTGGTCCTTT+TGG	0.233866	2_2:+10876	Msa0228680:CDS
TGAGGTGGTGGAGGGTTAAA+AGG	0.248017	2_2:-10483	None:intergenic
GAGGGTGGAAGTGGTGGTGG+TGG	0.249030	2_2:-10687	None:intergenic
GGAAGTGGTGGTGGTGGGGA+TGG	0.284071	2_2:-10681	None:intergenic
GGTGGGAAGGTGGTGGAGGG+AGG	0.284076	2_2:-10401	None:intergenic
GGAGAGGGTGGAAGTGGTGG+TGG	0.296005	2_2:-10690	None:intergenic
CAAGGCTTGTTCTCAGTTTG+TGG	0.308661	2_2:-11092	None:intergenic
TGTGGTGGTGGAGGAGAAAA+TGG	0.318705	2_2:-10600	None:intergenic
TGGTATGGAGAGGGAGAGGG+TGG	0.325738	2_2:-10702	None:intergenic
GATGGGCGAACGTGCGGTGG+TGG	0.351854	2_2:-10663	None:intergenic
GGGTGGAAGTGGTGGTGGTG+GGG	0.356370	2_2:-10685	None:intergenic
AGGGTGGAAGTGGTGGTGGT+GGG	0.368895	2_2:-10686	None:intergenic
GAAGTGGTGGTGGTGGGGAT+GGG	0.369423	2_2:-10680	None:intergenic
GGTGGAGGGAGGTGTGGAAA+TGG	0.372249	2_2:-10390	None:intergenic
GAGGGAGAGGGTGGAAGTGG+TGG	0.373887	2_2:-10693	None:intergenic
GGAAATGGAAAGTAGAAATT+TGG	0.376105	2_2:-10375	None:intergenic
GAAGGTGGTGGAGGGAGGTG+TGG	0.380410	2_2:-10396	None:intergenic
GGATGAGATGGTGGTGGTGG+AGG	0.385319	2_2:-10579	None:intergenic
TGCGGTGGTGGAGGAGCAAT+CGG	0.397934	2_2:-10651	None:intergenic
GGAGAGGGAGAGGGTGGAAG+TGG	0.399183	2_2:-10696	None:intergenic
GGGCGAACGTGCGGTGGTGG+AGG	0.401250	2_2:-10660	None:intergenic
AGGTGATGGAGGACGATTGA+GGG	0.408501	2_2:-10424	None:intergenic
AGGGTGGTATGGAGAGGGAG+AGG	0.419591	2_2:-10706	None:intergenic
GTCATTGTCATCGTTGCATT+TGG	0.420298	2_2:+10738	Msa0228680:CDS
GGGTGTCTGCGTCGAGGAGG+AGG	0.425134	2_2:-10558	None:intergenic
GGTGGGGATGGGCGAACGTG+CGG	0.425901	2_2:-10669	None:intergenic
AGGTGATGGTGGAGGATTGA+GGG	0.437408	2_2:-10454	None:intergenic
GGGGATGGGCGAACGTGCGG+TGG	0.441189	2_2:-10666	None:intergenic
AAGGTGATGGTGGAGGATTG+AGG	0.449907	2_2:-10455	None:intergenic
TTGAAGGAATGAGGTGGTGG+AGG	0.459738	2_2:-10492	None:intergenic
TGTCTGCGTCGAGGAGGAGG+AGG	0.463630	2_2:-10555	None:intergenic
GAGGTGGTGGAGGGTTAAAA+GGG	0.465798	2_2:-10482	None:intergenic
CTGCGTCGAGGAGGAGGAGG+AGG	0.466994	2_2:-10552	None:intergenic
ATTAAGAAGAATGAAGAAGT+TGG	0.477041	2_2:+10951	Msa0228680:CDS
GGGTGGTATGGAGAGGGAGA+GGG	0.477936	2_2:-10705	None:intergenic
GATGAGATGGTGGTGGTGGA+GGG	0.485982	2_2:-10578	None:intergenic
AATGGATGAGATGGTGGTGG+TGG	0.486842	2_2:-10582	None:intergenic
GGTGGATGCTTGTGTGGTGG+TGG	0.492789	2_2:-10612	None:intergenic
GAATGAGATGGTGCTGGTGC+AGG	0.508496	2_2:-10525	None:intergenic
GATGGTGCTGGTGCAGGTGG+TGG	0.517171	2_2:-10519	None:intergenic
ACAATGACAGTAGGGTGGTA+TGG	0.518977	2_2:-10717	None:intergenic
GGGTGGAAAGGTGATGGTGG+AGG	0.522390	2_2:-10462	None:intergenic
ATTACGGAAAATATTGTGCC+TGG	0.526367	2_2:+10867	Msa0228680:CDS
GGATGCTTGTGTGGTGGTGG+AGG	0.527119	2_2:-10609	None:intergenic
ATTGTCATCGTTGCATTTGG+TGG	0.532727	2_2:+10741	Msa0228680:CDS
ACAGTAGGGTGGTATGGAGA+GGG	0.540197	2_2:-10711	None:intergenic
AAAAGCAAGCATGGCTAGCA+AGG	0.544044	2_2:-10769	None:intergenic
AAGGTGATGGAGGACGATTG+AGG	0.545382	2_2:-10425	None:intergenic
TGCAGGTGGTGGAGATTTGA+AGG	0.545845	2_2:-10508	None:intergenic
GGTGATGGAGGACGATTGAG+GGG	0.550499	2_2:-10423	None:intergenic
TGAAGGAATGAGGTGGTGGA+GGG	0.554517	2_2:-10491	None:intergenic
GATGGCGGTGGATGCTTGTG+TGG	0.554576	2_2:-10618	None:intergenic
GGAGGAGGGAATGAATGAGA+TGG	0.562435	2_2:-10537	None:intergenic
GCAATCGGGTGATGTGGAGA+TGG	0.563863	2_2:-10636	None:intergenic
AAAGGGTGGAAAGGTGATGG+TGG	0.565749	2_2:-10465	None:intergenic
TGAGATGGTGCTGGTGCAGG+TGG	0.566731	2_2:-10522	None:intergenic
GATTTGAAGGAATGAGGTGG+TGG	0.569065	2_2:-10495	None:intergenic
GGGTGATGTGGAGATGGCGG+TGG	0.571208	2_2:-10630	None:intergenic
GGAGGAGCAATCGGGTGATG+TGG	0.573841	2_2:-10642	None:intergenic
GGAGGAGAAAATGGATGAGA+TGG	0.577431	2_2:-10591	None:intergenic
GCGGTGGTGGAGGAGCAATC+GGG	0.577784	2_2:-10650	None:intergenic
AAATAATGCAAAAGCAAGCA+TGG	0.582740	2_2:-10778	None:intergenic
GGAGGGTGTCTGCGTCGAGG+AGG	0.586355	2_2:-10561	None:intergenic
TTAAAAGGGTGGAAAGGTGA+TGG	0.587230	2_2:-10468	None:intergenic
TGTTTCTAGTATCAATGAAG+TGG	0.590053	2_2:+11022	Msa0228680:CDS
GTGGCAAATACTACTTCTCC+TGG	0.590647	2_2:+11041	Msa0228680:CDS
GGCGGTGGATGCTTGTGTGG+TGG	0.590895	2_2:-10615	None:intergenic
ATGACAATGACAATGACAGT+AGG	0.594959	2_2:-10726	None:intergenic
GGTGGAGATTTGAAGGAATG+AGG	0.598369	2_2:-10501	None:intergenic
GGAGAAAATGGATGAGATGG+TGG	0.598493	2_2:-10588	None:intergenic
GTGATGGTGGAGGATTGAGG+GGG	0.598708	2_2:-10452	None:intergenic
GACAGTAGGGTGGTATGGAG+AGG	0.600632	2_2:-10712	None:intergenic
GTGGTGGAGGGTTAAAAGGG+TGG	0.608893	2_2:-10479	None:intergenic
GGGAATGAATGAGATGGTGC+TGG	0.611239	2_2:-10531	None:intergenic
GGAGGGTTAAAAGGGTGGAA+AGG	0.612341	2_2:-10474	None:intergenic
TCAACTGTAACCACCACCGT+TGG	0.612957	2_2:-10903	None:intergenic
GGTGGAGGGTGTCTGCGTCG+AGG	0.615928	2_2:-10564	None:intergenic
GAAAATGGATGAGATGGTGG+TGG	0.617277	2_2:-10585	None:intergenic
GGTGATGGTGGAGGATTGAG+GGG	0.623247	2_2:-10453	None:intergenic
TGACAATGACAATGACAGTA+GGG	0.623939	2_2:-10725	None:intergenic
ATCGGGTGATGTGGAGATGG+CGG	0.626196	2_2:-10633	None:intergenic
TGATGATCATGTTCATGACC+AGG	0.643098	2_2:-11059	None:intergenic
TGCGTCGAGGAGGAGGAGGA+GGG	0.651558	2_2:-10551	None:intergenic
GTGATGGAGGACGATTGAGG+GGG	0.666650	2_2:-10422	None:intergenic
GGAGATTTGAAGGAATGAGG+TGG	0.695776	2_2:-10498	None:intergenic
CAATGACAATGACAGTAGGG+TGG	0.721621	2_2:-10722	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GTAGAAATTTGGTTGATTTA+AGG	-	chr2_2:10367-10386	None:intergenic	25.0%
!	CGATGAACATAAAAAGATTA+CGG	+	chr2_2:10851-10870	Msa0228680:CDS	25.0%
!	ATTAAGAAGAATGAAGAAGT+TGG	+	chr2_2:10951-10970	Msa0228680:CDS	25.0%
!!	GTAGAAATTTGGTTGATTTA+AGG	-	chr2_2:10367-10386	None:intergenic	25.0%
!	CGATGAACATAAAAAGATTA+CGG	+	chr2_2:10851-10870	Msa0228680:CDS	25.0%
!	ATTAAGAAGAATGAAGAAGT+TGG	+	chr2_2:10951-10970	Msa0228680:CDS	25.0%
	GGAAATGGAAAGTAGAAATT+TGG	-	chr2_2:10378-10397	None:intergenic	30.0%
	AAATAATGCAAAAGCAAGCA+TGG	-	chr2_2:10781-10800	None:intergenic	30.0%
!!	TGTTTCTAGTATCAATGAAG+TGG	+	chr2_2:11022-11041	Msa0228680:CDS	30.0%
	GGAAATGGAAAGTAGAAATT+TGG	-	chr2_2:10378-10397	None:intergenic	30.0%
	AAATAATGCAAAAGCAAGCA+TGG	-	chr2_2:10781-10800	None:intergenic	30.0%
!!	TGTTTCTAGTATCAATGAAG+TGG	+	chr2_2:11022-11041	Msa0228680:CDS	30.0%
	TGACAATGACAATGACAGTA+GGG	-	chr2_2:10728-10747	None:intergenic	35.0%
	ATGACAATGACAATGACAGT+AGG	-	chr2_2:10729-10748	None:intergenic	35.0%
!	TATTTTGCTGCGTTCAAAAG+AGG	+	chr2_2:10796-10815	Msa0228680:CDS	35.0%
	ATTACGGAAAATATTGTGCC+TGG	+	chr2_2:10867-10886	Msa0228680:CDS	35.0%
	TGACAATGACAATGACAGTA+GGG	-	chr2_2:10728-10747	None:intergenic	35.0%
	ATGACAATGACAATGACAGT+AGG	-	chr2_2:10729-10748	None:intergenic	35.0%
!	TATTTTGCTGCGTTCAAAAG+AGG	+	chr2_2:10796-10815	Msa0228680:CDS	35.0%
	ATTACGGAAAATATTGTGCC+TGG	+	chr2_2:10867-10886	Msa0228680:CDS	35.0%
	TTAAAAGGGTGGAAAGGTGA+TGG	-	chr2_2:10471-10490	None:intergenic	40.0%
	GTCATTGTCATCGTTGCATT+TGG	+	chr2_2:10738-10757	Msa0228680:CDS	40.0%
	ATTGTCATCGTTGCATTTGG+TGG	+	chr2_2:10741-10760	Msa0228680:CDS	40.0%
!	AATATTGTGCCTGGTCCTTT+TGG	+	chr2_2:10876-10895	Msa0228680:CDS	40.0%
!!	TGGTCCTTTTGGAAAACCAA+CGG	+	chr2_2:10887-10906	Msa0228680:CDS	40.0%
	TGATGATCATGTTCATGACC+AGG	-	chr2_2:11062-11081	None:intergenic	40.0%
	TTAAAAGGGTGGAAAGGTGA+TGG	-	chr2_2:10471-10490	None:intergenic	40.0%
	GTCATTGTCATCGTTGCATT+TGG	+	chr2_2:10738-10757	Msa0228680:CDS	40.0%
	ATTGTCATCGTTGCATTTGG+TGG	+	chr2_2:10741-10760	Msa0228680:CDS	40.0%
!	AATATTGTGCCTGGTCCTTT+TGG	+	chr2_2:10876-10895	Msa0228680:CDS	40.0%
!!	TGGTCCTTTTGGAAAACCAA+CGG	+	chr2_2:10887-10906	Msa0228680:CDS	40.0%
	TGATGATCATGTTCATGACC+AGG	-	chr2_2:11062-11081	None:intergenic	40.0%
	GATTTGAAGGAATGAGGTGG+TGG	-	chr2_2:10498-10517	None:intergenic	45.0%
	GGAGATTTGAAGGAATGAGG+TGG	-	chr2_2:10501-10520	None:intergenic	45.0%
	GGTGGAGATTTGAAGGAATG+AGG	-	chr2_2:10504-10523	None:intergenic	45.0%
!	GAAAATGGATGAGATGGTGG+TGG	-	chr2_2:10588-10607	None:intergenic	45.0%
	GGAGAAAATGGATGAGATGG+TGG	-	chr2_2:10591-10610	None:intergenic	45.0%
	GGAGGAGAAAATGGATGAGA+TGG	-	chr2_2:10594-10613	None:intergenic	45.0%
	ACAATGACAGTAGGGTGGTA+TGG	-	chr2_2:10720-10739	None:intergenic	45.0%
	CAATGACAATGACAGTAGGG+TGG	-	chr2_2:10725-10744	None:intergenic	45.0%
	AAAAGCAAGCATGGCTAGCA+AGG	-	chr2_2:10772-10791	None:intergenic	45.0%
!!!	GTTGGTTTTCCAAAAGGACC+AGG	-	chr2_2:10888-10907	None:intergenic	45.0%
!!	TCCTTTTGGAAAACCAACGG+TGG	+	chr2_2:10890-10909	Msa0228680:CDS	45.0%
!!!	ACCACCGTTGGTTTTCCAAA+AGG	-	chr2_2:10894-10913	None:intergenic	45.0%
!!	TTTTGGAAAACCAACGGTGG+TGG	+	chr2_2:10893-10912	Msa0228680:CDS	45.0%
	GTGGCAAATACTACTTCTCC+TGG	+	chr2_2:11041-11060	Msa0228680:CDS	45.0%
!	CAAGGCTTGTTCTCAGTTTG+TGG	-	chr2_2:11095-11114	None:intergenic	45.0%
	GATTTGAAGGAATGAGGTGG+TGG	-	chr2_2:10498-10517	None:intergenic	45.0%
	GGAGATTTGAAGGAATGAGG+TGG	-	chr2_2:10501-10520	None:intergenic	45.0%
	GGTGGAGATTTGAAGGAATG+AGG	-	chr2_2:10504-10523	None:intergenic	45.0%
!	GAAAATGGATGAGATGGTGG+TGG	-	chr2_2:10588-10607	None:intergenic	45.0%
	GGAGAAAATGGATGAGATGG+TGG	-	chr2_2:10591-10610	None:intergenic	45.0%
	GGAGGAGAAAATGGATGAGA+TGG	-	chr2_2:10594-10613	None:intergenic	45.0%
	ACAATGACAGTAGGGTGGTA+TGG	-	chr2_2:10720-10739	None:intergenic	45.0%
	CAATGACAATGACAGTAGGG+TGG	-	chr2_2:10725-10744	None:intergenic	45.0%
	AAAAGCAAGCATGGCTAGCA+AGG	-	chr2_2:10772-10791	None:intergenic	45.0%
!!!	GTTGGTTTTCCAAAAGGACC+AGG	-	chr2_2:10888-10907	None:intergenic	45.0%
!!	TCCTTTTGGAAAACCAACGG+TGG	+	chr2_2:10890-10909	Msa0228680:CDS	45.0%
!!!	ACCACCGTTGGTTTTCCAAA+AGG	-	chr2_2:10894-10913	None:intergenic	45.0%
!!	TTTTGGAAAACCAACGGTGG+TGG	+	chr2_2:10893-10912	Msa0228680:CDS	45.0%
	GTGGCAAATACTACTTCTCC+TGG	+	chr2_2:11041-11060	Msa0228680:CDS	45.0%
!	CAAGGCTTGTTCTCAGTTTG+TGG	-	chr2_2:11095-11114	None:intergenic	45.0%
!!	AGGTGATGGAGGACGATTGA+GGG	-	chr2_2:10427-10446	None:intergenic	50.0%
!!	AAGGTGATGGAGGACGATTG+AGG	-	chr2_2:10428-10447	None:intergenic	50.0%
!!	AGGTGATGGTGGAGGATTGA+GGG	-	chr2_2:10457-10476	None:intergenic	50.0%
!!	AAGGTGATGGTGGAGGATTG+AGG	-	chr2_2:10458-10477	None:intergenic	50.0%
!	AAAGGGTGGAAAGGTGATGG+TGG	-	chr2_2:10468-10487	None:intergenic	50.0%
	GGAGGGTTAAAAGGGTGGAA+AGG	-	chr2_2:10477-10496	None:intergenic	50.0%
!!	GAGGTGGTGGAGGGTTAAAA+GGG	-	chr2_2:10485-10504	None:intergenic	50.0%
!!	TGAGGTGGTGGAGGGTTAAA+AGG	-	chr2_2:10486-10505	None:intergenic	50.0%
!!	TGAAGGAATGAGGTGGTGGA+GGG	-	chr2_2:10494-10513	None:intergenic	50.0%
!	TTGAAGGAATGAGGTGGTGG+AGG	-	chr2_2:10495-10514	None:intergenic	50.0%
!!	TGCAGGTGGTGGAGATTTGA+AGG	-	chr2_2:10511-10530	None:intergenic	50.0%
	GGGAATGAATGAGATGGTGC+TGG	-	chr2_2:10534-10553	None:intergenic	50.0%
	GGAGGAGGGAATGAATGAGA+TGG	-	chr2_2:10540-10559	None:intergenic	50.0%
!!	AATGGATGAGATGGTGGTGG+TGG	-	chr2_2:10585-10604	None:intergenic	50.0%
!!	TGTGGTGGTGGAGGAGAAAA+TGG	-	chr2_2:10603-10622	None:intergenic	50.0%
	ACAGTAGGGTGGTATGGAGA+GGG	-	chr2_2:10714-10733	None:intergenic	50.0%
	TCAACTGTAACCACCACCGT+TGG	-	chr2_2:10906-10925	None:intergenic	50.0%
!!	AGGTGATGGAGGACGATTGA+GGG	-	chr2_2:10427-10446	None:intergenic	50.0%
!!	AAGGTGATGGAGGACGATTG+AGG	-	chr2_2:10428-10447	None:intergenic	50.0%
!!	AGGTGATGGTGGAGGATTGA+GGG	-	chr2_2:10457-10476	None:intergenic	50.0%
!!	AAGGTGATGGTGGAGGATTG+AGG	-	chr2_2:10458-10477	None:intergenic	50.0%
!	AAAGGGTGGAAAGGTGATGG+TGG	-	chr2_2:10468-10487	None:intergenic	50.0%
	GGAGGGTTAAAAGGGTGGAA+AGG	-	chr2_2:10477-10496	None:intergenic	50.0%
!!	GAGGTGGTGGAGGGTTAAAA+GGG	-	chr2_2:10485-10504	None:intergenic	50.0%
!!	TGAGGTGGTGGAGGGTTAAA+AGG	-	chr2_2:10486-10505	None:intergenic	50.0%
!!	TGAAGGAATGAGGTGGTGGA+GGG	-	chr2_2:10494-10513	None:intergenic	50.0%
!	TTGAAGGAATGAGGTGGTGG+AGG	-	chr2_2:10495-10514	None:intergenic	50.0%
!!	TGCAGGTGGTGGAGATTTGA+AGG	-	chr2_2:10511-10530	None:intergenic	50.0%
	GGGAATGAATGAGATGGTGC+TGG	-	chr2_2:10534-10553	None:intergenic	50.0%
	GGAGGAGGGAATGAATGAGA+TGG	-	chr2_2:10540-10559	None:intergenic	50.0%
!!	AATGGATGAGATGGTGGTGG+TGG	-	chr2_2:10585-10604	None:intergenic	50.0%
!!	TGTGGTGGTGGAGGAGAAAA+TGG	-	chr2_2:10603-10622	None:intergenic	50.0%
	ACAGTAGGGTGGTATGGAGA+GGG	-	chr2_2:10714-10733	None:intergenic	50.0%
	TCAACTGTAACCACCACCGT+TGG	-	chr2_2:10906-10925	None:intergenic	50.0%
!	GTGATGGAGGACGATTGAGG+GGG	-	chr2_2:10425-10444	None:intergenic	55.0%
!!	GGTGATGGAGGACGATTGAG+GGG	-	chr2_2:10426-10445	None:intergenic	55.0%
	TTGAGGGGGTGGAAAGGTGA+TGG	-	chr2_2:10441-10460	None:intergenic	55.0%
!!	GTGATGGTGGAGGATTGAGG+GGG	-	chr2_2:10455-10474	None:intergenic	55.0%
!!	GGTGATGGTGGAGGATTGAG+GGG	-	chr2_2:10456-10475	None:intergenic	55.0%
!	GTGGTGGAGGGTTAAAAGGG+TGG	-	chr2_2:10482-10501	None:intergenic	55.0%
!!	GAATGAGATGGTGCTGGTGC+AGG	-	chr2_2:10528-10547	None:intergenic	55.0%
!!	GATGAGATGGTGGTGGTGGA+GGG	-	chr2_2:10581-10600	None:intergenic	55.0%
	ATCGGGTGATGTGGAGATGG+CGG	-	chr2_2:10636-10655	None:intergenic	55.0%
	GCAATCGGGTGATGTGGAGA+TGG	-	chr2_2:10639-10658	None:intergenic	55.0%
	GACAGTAGGGTGGTATGGAG+AGG	-	chr2_2:10715-10734	None:intergenic	55.0%
!	GTGATGGAGGACGATTGAGG+GGG	-	chr2_2:10425-10444	None:intergenic	55.0%
!!	GGTGATGGAGGACGATTGAG+GGG	-	chr2_2:10426-10445	None:intergenic	55.0%
	TTGAGGGGGTGGAAAGGTGA+TGG	-	chr2_2:10441-10460	None:intergenic	55.0%
!!	GTGATGGTGGAGGATTGAGG+GGG	-	chr2_2:10455-10474	None:intergenic	55.0%
!!	GGTGATGGTGGAGGATTGAG+GGG	-	chr2_2:10456-10475	None:intergenic	55.0%
!	GTGGTGGAGGGTTAAAAGGG+TGG	-	chr2_2:10482-10501	None:intergenic	55.0%
!!	GAATGAGATGGTGCTGGTGC+AGG	-	chr2_2:10528-10547	None:intergenic	55.0%
!!	GATGAGATGGTGGTGGTGGA+GGG	-	chr2_2:10581-10600	None:intergenic	55.0%
	ATCGGGTGATGTGGAGATGG+CGG	-	chr2_2:10636-10655	None:intergenic	55.0%
	GCAATCGGGTGATGTGGAGA+TGG	-	chr2_2:10639-10658	None:intergenic	55.0%
	GACAGTAGGGTGGTATGGAG+AGG	-	chr2_2:10715-10734	None:intergenic	55.0%
!	GGTGGAGGGAGGTGTGGAAA+TGG	-	chr2_2:10393-10412	None:intergenic	60.0%
	TGGAGGACGATTGAGGGGGT+GGG	-	chr2_2:10421-10440	None:intergenic	60.0%
	ATGGAGGACGATTGAGGGGG+TGG	-	chr2_2:10422-10441	None:intergenic	60.0%
!	AGGGGGTGGAAAGGTGATGG+AGG	-	chr2_2:10438-10457	None:intergenic	60.0%
	GGAGGATTGAGGGGGTGGAA+AGG	-	chr2_2:10447-10466	None:intergenic	60.0%
!	ATGGTGGAGGATTGAGGGGG+TGG	-	chr2_2:10452-10471	None:intergenic	60.0%
!!	GGGTGGAAAGGTGATGGTGG+AGG	-	chr2_2:10465-10484	None:intergenic	60.0%
!!	TGAGATGGTGCTGGTGCAGG+TGG	-	chr2_2:10525-10544	None:intergenic	60.0%
!!	GGATGAGATGGTGGTGGTGG+AGG	-	chr2_2:10582-10601	None:intergenic	60.0%
!!	GGATGCTTGTGTGGTGGTGG+AGG	-	chr2_2:10612-10631	None:intergenic	60.0%
	GGTGGATGCTTGTGTGGTGG+TGG	-	chr2_2:10615-10634	None:intergenic	60.0%
!	GATGGCGGTGGATGCTTGTG+TGG	-	chr2_2:10621-10640	None:intergenic	60.0%
	GGAGGAGCAATCGGGTGATG+TGG	-	chr2_2:10645-10664	None:intergenic	60.0%
!!	TGCGGTGGTGGAGGAGCAAT+CGG	-	chr2_2:10654-10673	None:intergenic	60.0%
!!	GAAGTGGTGGTGGTGGGGAT+GGG	-	chr2_2:10683-10702	None:intergenic	60.0%
!!	AGGGTGGAAGTGGTGGTGGT+GGG	-	chr2_2:10689-10708	None:intergenic	60.0%
	TGGTATGGAGAGGGAGAGGG+TGG	-	chr2_2:10705-10724	None:intergenic	60.0%
	GGGTGGTATGGAGAGGGAGA+GGG	-	chr2_2:10708-10727	None:intergenic	60.0%
	AGGGTGGTATGGAGAGGGAG+AGG	-	chr2_2:10709-10728	None:intergenic	60.0%
!	GGTGGAGGGAGGTGTGGAAA+TGG	-	chr2_2:10393-10412	None:intergenic	60.0%
	TGGAGGACGATTGAGGGGGT+GGG	-	chr2_2:10421-10440	None:intergenic	60.0%
	ATGGAGGACGATTGAGGGGG+TGG	-	chr2_2:10422-10441	None:intergenic	60.0%
!	AGGGGGTGGAAAGGTGATGG+AGG	-	chr2_2:10438-10457	None:intergenic	60.0%
	GGAGGATTGAGGGGGTGGAA+AGG	-	chr2_2:10447-10466	None:intergenic	60.0%
!	ATGGTGGAGGATTGAGGGGG+TGG	-	chr2_2:10452-10471	None:intergenic	60.0%
!!	GGGTGGAAAGGTGATGGTGG+AGG	-	chr2_2:10465-10484	None:intergenic	60.0%
!!	TGAGATGGTGCTGGTGCAGG+TGG	-	chr2_2:10525-10544	None:intergenic	60.0%
!!	GGATGAGATGGTGGTGGTGG+AGG	-	chr2_2:10582-10601	None:intergenic	60.0%
!!	GGATGCTTGTGTGGTGGTGG+AGG	-	chr2_2:10612-10631	None:intergenic	60.0%
	GGTGGATGCTTGTGTGGTGG+TGG	-	chr2_2:10615-10634	None:intergenic	60.0%
!	GATGGCGGTGGATGCTTGTG+TGG	-	chr2_2:10621-10640	None:intergenic	60.0%
	GGAGGAGCAATCGGGTGATG+TGG	-	chr2_2:10645-10664	None:intergenic	60.0%
!!	TGCGGTGGTGGAGGAGCAAT+CGG	-	chr2_2:10654-10673	None:intergenic	60.0%
!!	GAAGTGGTGGTGGTGGGGAT+GGG	-	chr2_2:10683-10702	None:intergenic	60.0%
!!	AGGGTGGAAGTGGTGGTGGT+GGG	-	chr2_2:10689-10708	None:intergenic	60.0%
	TGGTATGGAGAGGGAGAGGG+TGG	-	chr2_2:10705-10724	None:intergenic	60.0%
	GGGTGGTATGGAGAGGGAGA+GGG	-	chr2_2:10708-10727	None:intergenic	60.0%
	AGGGTGGTATGGAGAGGGAG+AGG	-	chr2_2:10709-10728	None:intergenic	60.0%
!!	GAAGGTGGTGGAGGGAGGTG+TGG	-	chr2_2:10399-10418	None:intergenic	65.0%
	TTGAGGGGGTGGGAAGGTGG+TGG	-	chr2_2:10411-10430	None:intergenic	65.0%
	CGATTGAGGGGGTGGGAAGG+TGG	-	chr2_2:10414-10433	None:intergenic	65.0%
	GGACGATTGAGGGGGTGGGA+AGG	-	chr2_2:10417-10436	None:intergenic	65.0%
!!	GATGGTGCTGGTGCAGGTGG+TGG	-	chr2_2:10522-10541	None:intergenic	65.0%
	TGCGTCGAGGAGGAGGAGGA+GGG	-	chr2_2:10554-10573	None:intergenic	65.0%
	TGTCTGCGTCGAGGAGGAGG+AGG	-	chr2_2:10558-10577	None:intergenic	65.0%
	GGCGGTGGATGCTTGTGTGG+TGG	-	chr2_2:10618-10637	None:intergenic	65.0%
!	GGGTGATGTGGAGATGGCGG+TGG	-	chr2_2:10633-10652	None:intergenic	65.0%
!!	GCGGTGGTGGAGGAGCAATC+GGG	-	chr2_2:10653-10672	None:intergenic	65.0%
!!	GGAAGTGGTGGTGGTGGGGA+TGG	-	chr2_2:10684-10703	None:intergenic	65.0%
!!	GGGTGGAAGTGGTGGTGGTG+GGG	-	chr2_2:10688-10707	None:intergenic	65.0%
!!	GAGGGTGGAAGTGGTGGTGG+TGG	-	chr2_2:10690-10709	None:intergenic	65.0%
	GGAGAGGGTGGAAGTGGTGG+TGG	-	chr2_2:10693-10712	None:intergenic	65.0%
	GAGGGAGAGGGTGGAAGTGG+TGG	-	chr2_2:10696-10715	None:intergenic	65.0%
	GGAGAGGGAGAGGGTGGAAG+TGG	-	chr2_2:10699-10718	None:intergenic	65.0%
!!	GAAGGTGGTGGAGGGAGGTG+TGG	-	chr2_2:10399-10418	None:intergenic	65.0%
	TTGAGGGGGTGGGAAGGTGG+TGG	-	chr2_2:10411-10430	None:intergenic	65.0%
	CGATTGAGGGGGTGGGAAGG+TGG	-	chr2_2:10414-10433	None:intergenic	65.0%
	GGACGATTGAGGGGGTGGGA+AGG	-	chr2_2:10417-10436	None:intergenic	65.0%
!!	GATGGTGCTGGTGCAGGTGG+TGG	-	chr2_2:10522-10541	None:intergenic	65.0%
	TGCGTCGAGGAGGAGGAGGA+GGG	-	chr2_2:10554-10573	None:intergenic	65.0%
	TGTCTGCGTCGAGGAGGAGG+AGG	-	chr2_2:10558-10577	None:intergenic	65.0%
	GGCGGTGGATGCTTGTGTGG+TGG	-	chr2_2:10618-10637	None:intergenic	65.0%
!	GGGTGATGTGGAGATGGCGG+TGG	-	chr2_2:10633-10652	None:intergenic	65.0%
!!	GCGGTGGTGGAGGAGCAATC+GGG	-	chr2_2:10653-10672	None:intergenic	65.0%
!!	GGAAGTGGTGGTGGTGGGGA+TGG	-	chr2_2:10684-10703	None:intergenic	65.0%
!!	GGGTGGAAGTGGTGGTGGTG+GGG	-	chr2_2:10688-10707	None:intergenic	65.0%
!!	GAGGGTGGAAGTGGTGGTGG+TGG	-	chr2_2:10690-10709	None:intergenic	65.0%
	GGAGAGGGTGGAAGTGGTGG+TGG	-	chr2_2:10693-10712	None:intergenic	65.0%
	GAGGGAGAGGGTGGAAGTGG+TGG	-	chr2_2:10696-10715	None:intergenic	65.0%
	GGAGAGGGAGAGGGTGGAAG+TGG	-	chr2_2:10699-10718	None:intergenic	65.0%
!!	GGTGGGAAGGTGGTGGAGGG+AGG	-	chr2_2:10404-10423	None:intergenic	70.0%
!!	GGGGGTGGGAAGGTGGTGGA+GGG	-	chr2_2:10407-10426	None:intergenic	70.0%
!	AGGGGGTGGGAAGGTGGTGG+AGG	-	chr2_2:10408-10427	None:intergenic	70.0%
	CTGCGTCGAGGAGGAGGAGG+AGG	-	chr2_2:10555-10574	None:intergenic	70.0%
	GGGTGTCTGCGTCGAGGAGG+AGG	-	chr2_2:10561-10580	None:intergenic	70.0%
!!	GGAGGGTGTCTGCGTCGAGG+AGG	-	chr2_2:10564-10583	None:intergenic	70.0%
!!	GGTGGAGGGTGTCTGCGTCG+AGG	-	chr2_2:10567-10586	None:intergenic	70.0%
	GATGGGCGAACGTGCGGTGG+TGG	-	chr2_2:10666-10685	None:intergenic	70.0%
	GGTGGGGATGGGCGAACGTG+CGG	-	chr2_2:10672-10691	None:intergenic	70.0%
!!	GGTGGGAAGGTGGTGGAGGG+AGG	-	chr2_2:10404-10423	None:intergenic	70.0%
!!	GGGGGTGGGAAGGTGGTGGA+GGG	-	chr2_2:10407-10426	None:intergenic	70.0%
!	AGGGGGTGGGAAGGTGGTGG+AGG	-	chr2_2:10408-10427	None:intergenic	70.0%
	CTGCGTCGAGGAGGAGGAGG+AGG	-	chr2_2:10555-10574	None:intergenic	70.0%
	GGGTGTCTGCGTCGAGGAGG+AGG	-	chr2_2:10561-10580	None:intergenic	70.0%
!!	GGAGGGTGTCTGCGTCGAGG+AGG	-	chr2_2:10564-10583	None:intergenic	70.0%
!!	GGTGGAGGGTGTCTGCGTCG+AGG	-	chr2_2:10567-10586	None:intergenic	70.0%
	GATGGGCGAACGTGCGGTGG+TGG	-	chr2_2:10666-10685	None:intergenic	70.0%
	GGTGGGGATGGGCGAACGTG+CGG	-	chr2_2:10672-10691	None:intergenic	70.0%
!	GGGCGAACGTGCGGTGGTGG+AGG	-	chr2_2:10663-10682	None:intergenic	75.0%
	GGGGATGGGCGAACGTGCGG+TGG	-	chr2_2:10669-10688	None:intergenic	75.0%
!	GGGCGAACGTGCGGTGGTGG+AGG	-	chr2_2:10663-10682	None:intergenic	75.0%
	GGGGATGGGCGAACGTGCGG+TGG	-	chr2_2:10669-10688	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	10360	11115	10360	ID=Msa0228680;Name=Msa0228680
chr2_2	mRNA	10360	11115	10360	ID=Msa0228680-mRNA-1;Parent=Msa0228680;Name=Msa0228680-mRNA-1;_AED=0.39;_eAED=0.40;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|251
chr2_2	exon	10360	11115	10360	ID=Msa0228680-mRNA-1:exon:11;Parent=Msa0228680-mRNA-1
chr2_2	CDS	10360	11115	10360	ID=Msa0228680-mRNA-1:cds;Parent=Msa0228680-mRNA-1

Gene Sequence

>Msa0228680

ATGGCCTTAAATCAACCAAATTTCTACTTTCCATTTCCACACCTCCCTCCACCACCTTCCCACCCCCTCAATCGTCCTCCATCACCTTTCCACCCCCTCAATCCTCCACCATCACCTTTCCACCCTTTTAACCCTCCACCACCTCATTCCTTCAAATCTCCACCACCTGCACCAGCACCATCTCATTCATTCCCTCCTCCTCCTCCTCGACGCAGACACCCTCCACCACCACCATCTCATCCATTTTCTCCTCCACCACCACACAAGCATCCACCGCCATCTCCACATCACCCGATTGCTCCTCCACCACCGCACGTTCGCCCATCCCCACCACCACCACTTCCACCCTCTCCCTCTCCATACCACCCTACTGTCATTGTCATTGTCATCGTTGCATTTGGTGGCATTGCCTTGCTAGCCATGCTTGCTTTTGCATTATTTTGCTGCGTTCAAAAGAGGAAGAAGAAACAAGAAAGCGATGTCATTCATATCGATGAACATAAAAAGATTACGGAAAATATTGTGCCTGGTCCTTTTGGAAAACCAACGGTGGTGGTTACAGTTGAAGATGATGTTCATATTGATGAAGTAATTAAGAAGAATGAAGAAGTTGGTCATGCTTTACATGCTGAAGCATCAAAAGTTGAATCAAATCAAGATAATGTTTCTAGTATCAATGAAGTGGCAAATACTACTTCTCCTGGTCATGAACATGATCATCATCATATTCAGCCACAAACTGAGAACAAGCCTTGA

Protein sequence

>Msa0228680

MALNQPNFYFPFPHLPPPPSHPLNRPPSPFHPLNPPPSPFHPFNPPPPHSFKSPPPAPAPSHSFPPPPPRRRHPPPPPSHPFSPPPPHKHPPPSPHHPIAPPPPHVRPSPPPPLPPSPSPYHPTVIVIVIVAFGGIALLAMLAFALFCCVQKRKKKQESDVIHIDEHKKITENIVPGPFGKPTVVVTVEDDVHIDEVIKKNEEVGHALHAEASKVESNQDNVSSINEVANTTSPGHEHDHHHIQPQTENKP*