AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1083270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083270 MtrunA17_Chr7g0271281 100.000 54 0 0 1 54 1 54 6.61e-33 106
Msa1083270 MtrunA17_Chr7g0271271 87.037 54 7 0 1 54 1 54 1.67e-29 98.2
Msa1083270 MtrunA17_Chr7g0271261 81.481 54 10 0 1 54 1 54 1.79e-26 90.5
Msa1083270 MtrunA17_Chr6g0462381 61.538 52 20 0 1 52 1 52 1.32e-19 73.2
Msa1083270 MtrunA17_Chr4g0073821 62.500 48 17 1 6 52 8 55 1.61e-14 60.8
Msa1083270 MtrunA17_Chr4g0073811 56.522 46 19 1 8 52 10 55 5.86e-12 54.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083270 AT3G05890.1 81.481 54 10 0 1 54 1 54 1.91e-26 90.9
Msa1083270 AT3G05880.1 75.926 54 13 0 1 54 1 54 3.72e-25 87.4
Msa1083270 AT2G38905.1 62.264 53 20 0 1 53 1 53 2.85e-20 75.1
Msa1083270 AT1G57550.1 50.980 51 25 0 4 54 2 52 1.53e-15 63.2
Msa1083270 AT4G28088.1 57.692 52 21 1 2 52 4 55 1.02e-14 61.6
Msa1083270 AT2G24040.1 64.583 48 16 1 6 52 8 55 1.40e-14 61.2
Msa1083270 AT4G30650.1 65.217 46 15 1 8 52 10 55 4.79e-14 60.1
Msa1083270 AT4G30660.1 67.391 46 14 1 8 52 10 55 3.05e-13 58.2
Msa1083270 AT4G30660.2 67.391 46 14 1 8 52 10 55 3.05e-13 58.2

Find 25 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCCAAAAGATCGAAAA+TGG 0.194480 7_2:+83562398 Msa1083270:exon
CTTGGTGTCTTCCTCAAGTT+TGG 0.260294 7_2:+83562468 Msa1083270:CDS
TTCCAGGGAGATAGCCAAAA+AGG 0.293556 7_2:-83562621 None:intergenic
GTGTTATATAGGTGGAGTTC+TGG 0.372801 7_2:+83562581 Msa1083270:intron
TAGATAGCATAGAGAATTCC+AGG 0.393214 7_2:-83562637 None:intergenic
GCCATCATCCTCCCTCCTCT+TGG 0.416680 7_2:+83562450 Msa1083270:CDS
GGTGGAGTTCTGGCTCTGTT+TGG 0.420945 7_2:+83562591 Msa1083270:intron
GTGGATCATACATAGTTGTC+AGG 0.428834 7_2:+83563760 Msa1083270:three_prime_UTR
AGTTTACAGAACAGTATTGT+TGG 0.442319 7_2:-83562355 None:intergenic
GTTTACAGAACAGTATTGTT+GGG 0.461916 7_2:-83562354 None:intergenic
CTCTCCAAAAGATCGAAAAT+GGG 0.485418 7_2:+83562399 Msa1083270:exon
CAAATGCTGAATTGATCACT+TGG 0.527891 7_2:-83562668 None:intergenic
GAAACCATGTAACATGTATG+AGG 0.530320 7_2:-83563785 None:intergenic
CATGAACAAGATTATTGAGA+AGG 0.531399 7_2:-83563969 None:intergenic
ACCAAGAGGAGGGAGGATGA+TGG 0.554856 7_2:-83562451 None:intergenic
GGGGCCTCATACATGTTACA+TGG 0.555701 7_2:+83563781 Msa1083270:three_prime_UTR
TGGATCATACATAGTTGTCA+GGG 0.613653 7_2:+83563761 Msa1083270:three_prime_UTR
TTGAGGAAGACACCAAGAGG+AGG 0.618682 7_2:-83562462 None:intergenic
TGAGGAAGACACCAAGAGGA+GGG 0.623808 7_2:-83562461 None:intergenic
TTACATGGCAGCCAAACTTG+AGG 0.631155 7_2:-83562479 None:intergenic
AAGCTTATGAACTCTAGCAA+TGG 0.636321 7_2:+83563918 Msa1083270:three_prime_UTR
AACTTGAGGAAGACACCAAG+AGG 0.669516 7_2:-83562465 None:intergenic
AGATAGCATAGAGAATTCCA+GGG 0.676358 7_2:-83562636 None:intergenic
GGAAGACACCAAGAGGAGGG+AGG 0.680794 7_2:-83562458 None:intergenic
GGATCATACATAGTTGTCAG+GGG 0.694128 7_2:+83563762 Msa1083270:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTACAAAAAAAATGA+AGG - chr7_2:83562524-83562543 None:intergenic 10.0%
!! TAATTAATTAATCAATTGTT+TGG + chr7_2:83562551-83562570 Msa1083270:intron 10.0%
!! TATTAATTTATTACATAGAT+AGG - chr7_2:83563072-83563091 None:intergenic 10.0%
!! AAAATTTACAAAAAAAATGA+AGG - chr7_2:83562524-83562543 None:intergenic 10.0%
!! TAATTAATTAATCAATTGTT+TGG + chr7_2:83562551-83562570 Msa1083270:intron 10.0%
!! TATTAATTTATTACATAGAT+AGG - chr7_2:83563072-83563091 None:intergenic 10.0%
!! ACATAAAAAAAGAATAACTT+TGG - chr7_2:83563840-83563859 None:intergenic 15.0%
!!! ATTCTTTTTTTATGTCTTTT+CGG + chr7_2:83563845-83563864 Msa1083270:three_prime_UTR 15.0%
!! ACATAAAAAAAGAATAACTT+TGG - chr7_2:83563840-83563859 None:intergenic 15.0%
!!! ATTCTTTTTTTATGTCTTTT+CGG + chr7_2:83563845-83563864 Msa1083270:three_prime_UTR 15.0%
!! GTCAATTAATCAATTAATCA+GGG - chr7_2:83562800-83562819 None:intergenic 20.0%
!! AGTCAATTAATCAATTAATC+AGG - chr7_2:83562801-83562820 None:intergenic 20.0%
!!! TATTTCTATTGAGTATTTAC+CGG + chr7_2:83563429-83563448 Msa1083270:intron 20.0%
!! AAACCACTTTATGTTAAAAA+GGG + chr7_2:83563492-83563511 Msa1083270:intron 20.0%
!! TATTTCTCAGTTTCATTATT+TGG + chr7_2:83563539-83563558 Msa1083270:intron 20.0%
!!! TTAATTTTCCTTCAATAACA+AGG + chr7_2:83563685-83563704 Msa1083270:intron 20.0%
!! TCAAAAATAGAGCAAAATAA+AGG - chr7_2:83563881-83563900 None:intergenic 20.0%
!! GTCAATTAATCAATTAATCA+GGG - chr7_2:83562800-83562819 None:intergenic 20.0%
!! AGTCAATTAATCAATTAATC+AGG - chr7_2:83562801-83562820 None:intergenic 20.0%
!!! TATTTCTATTGAGTATTTAC+CGG + chr7_2:83563429-83563448 Msa1083270:intron 20.0%
!! AAACCACTTTATGTTAAAAA+GGG + chr7_2:83563492-83563511 Msa1083270:intron 20.0%
!! TATTTCTCAGTTTCATTATT+TGG + chr7_2:83563539-83563558 Msa1083270:intron 20.0%
!!! TTAATTTTCCTTCAATAACA+AGG + chr7_2:83563685-83563704 Msa1083270:intron 20.0%
!! TCAAAAATAGAGCAAAATAA+AGG - chr7_2:83563881-83563900 None:intergenic 20.0%
!!! AGAAGAGAATTTTAGTTACA+TGG - chr7_2:83562497-83562516 None:intergenic 25.0%
!! TTGGTGATAATGTGTTATAT+AGG + chr7_2:83562570-83562589 Msa1083270:intron 25.0%
! TAGATAGAAAAGGGTAAAAT+TGG - chr7_2:83562700-83562719 None:intergenic 25.0%
! AGCAAGAAATAGATAGAAAA+GGG - chr7_2:83562709-83562728 None:intergenic 25.0%
! TTAATCAATTAATCAGGGTA+TGG - chr7_2:83562795-83562814 None:intergenic 25.0%
!!! CGTCTAAATTATTTTTACAC+AGG - chr7_2:83563000-83563019 None:intergenic 25.0%
! AATAATTTAGACGAACGATT+TGG + chr7_2:83563007-83563026 Msa1083270:intron 25.0%
! ATAATTTAGACGAACGATTT+GGG + chr7_2:83563008-83563027 Msa1083270:intron 25.0%
! TTGCTTATAATAATGATCAG+AGG - chr7_2:83563115-83563134 None:intergenic 25.0%
!!! ATTGCGTTTTAGTTTATGTT+TGG + chr7_2:83563313-83563332 Msa1083270:intron 25.0%
! CAAACCACTTTATGTTAAAA+AGG + chr7_2:83563491-83563510 Msa1083270:intron 25.0%
! AACCACTTTATGTTAAAAAG+GGG + chr7_2:83563493-83563512 Msa1083270:intron 25.0%
! GATAAGCATCACAATTATTT+AGG - chr7_2:83563650-83563669 None:intergenic 25.0%
!!! AATTAGTTCCTTGTTATTGA+AGG - chr7_2:83563696-83563715 None:intergenic 25.0%
!!! TATTCATTGTTTTTGTTGAC+AGG + chr7_2:83563738-83563757 Msa1083270:intron 25.0%
!!! AACTTTGTTTTGTTTAGTGA+TGG + chr7_2:83563813-83563832 Msa1083270:three_prime_UTR 25.0%
!!! AGAAGAGAATTTTAGTTACA+TGG - chr7_2:83562497-83562516 None:intergenic 25.0%
!! TTGGTGATAATGTGTTATAT+AGG + chr7_2:83562570-83562589 Msa1083270:intron 25.0%
! TAGATAGAAAAGGGTAAAAT+TGG - chr7_2:83562700-83562719 None:intergenic 25.0%
! AGCAAGAAATAGATAGAAAA+GGG - chr7_2:83562709-83562728 None:intergenic 25.0%
! TTAATCAATTAATCAGGGTA+TGG - chr7_2:83562795-83562814 None:intergenic 25.0%
!!! CGTCTAAATTATTTTTACAC+AGG - chr7_2:83563000-83563019 None:intergenic 25.0%
! AATAATTTAGACGAACGATT+TGG + chr7_2:83563007-83563026 Msa1083270:intron 25.0%
! ATAATTTAGACGAACGATTT+GGG + chr7_2:83563008-83563027 Msa1083270:intron 25.0%
! TTGCTTATAATAATGATCAG+AGG - chr7_2:83563115-83563134 None:intergenic 25.0%
!!! ATTGCGTTTTAGTTTATGTT+TGG + chr7_2:83563313-83563332 Msa1083270:intron 25.0%
! CAAACCACTTTATGTTAAAA+AGG + chr7_2:83563491-83563510 Msa1083270:intron 25.0%
! AACCACTTTATGTTAAAAAG+GGG + chr7_2:83563493-83563512 Msa1083270:intron 25.0%
! GATAAGCATCACAATTATTT+AGG - chr7_2:83563650-83563669 None:intergenic 25.0%
!!! AATTAGTTCCTTGTTATTGA+AGG - chr7_2:83563696-83563715 None:intergenic 25.0%
!!! TATTCATTGTTTTTGTTGAC+AGG + chr7_2:83563738-83563757 Msa1083270:intron 25.0%
!!! AACTTTGTTTTGTTTAGTGA+TGG + chr7_2:83563813-83563832 Msa1083270:three_prime_UTR 25.0%
! GCTTTCTTTTCATTGTCTTT+AGG + chr7_2:83562321-83562340 Msa1083270:five_prime_UTR 30.0%
GTTTACAGAACAGTATTGTT+GGG - chr7_2:83562357-83562376 None:intergenic 30.0%
AGTTTACAGAACAGTATTGT+TGG - chr7_2:83562358-83562377 None:intergenic 30.0%
! GTGATAATGTGTTATATAGG+TGG + chr7_2:83562573-83562592 Msa1083270:intron 30.0%
GAGCAAGAAATAGATAGAAA+AGG - chr7_2:83562710-83562729 None:intergenic 30.0%
! AATTGACTTATTTCATACCC+TGG + chr7_2:83562813-83562832 Msa1083270:intron 30.0%
CAATGTGTAAGTAAAAACCA+GGG - chr7_2:83562833-83562852 None:intergenic 30.0%
TCAATGTGTAAGTAAAAACC+AGG - chr7_2:83562834-83562853 None:intergenic 30.0%
! TTTGACTTTGCACATACATT+TGG - chr7_2:83562876-83562895 None:intergenic 30.0%
TCCTCTTGTATTAAATCTCA+AGG + chr7_2:83563046-83563065 Msa1083270:intron 30.0%
ATACTCAATAGAAATAACCC+AGG - chr7_2:83563425-83563444 None:intergenic 30.0%
! TTCCCCTTTTTAACATAAAG+TGG - chr7_2:83563498-83563517 None:intergenic 30.0%
AAAGGGGAAAATATGTGAAA+AGG + chr7_2:83563509-83563528 Msa1083270:intron 30.0%
AAGGGGAAAATATGTGAAAA+GGG + chr7_2:83563510-83563529 Msa1083270:intron 30.0%
CATGAACAAGATTATTGAGA+AGG - chr7_2:83563972-83563991 None:intergenic 30.0%
! GCTTTCTTTTCATTGTCTTT+AGG + chr7_2:83562321-83562340 Msa1083270:five_prime_UTR 30.0%
GTTTACAGAACAGTATTGTT+GGG - chr7_2:83562357-83562376 None:intergenic 30.0%
AGTTTACAGAACAGTATTGT+TGG - chr7_2:83562358-83562377 None:intergenic 30.0%
! GTGATAATGTGTTATATAGG+TGG + chr7_2:83562573-83562592 Msa1083270:intron 30.0%
GAGCAAGAAATAGATAGAAA+AGG - chr7_2:83562710-83562729 None:intergenic 30.0%
! AATTGACTTATTTCATACCC+TGG + chr7_2:83562813-83562832 Msa1083270:intron 30.0%
CAATGTGTAAGTAAAAACCA+GGG - chr7_2:83562833-83562852 None:intergenic 30.0%
TCAATGTGTAAGTAAAAACC+AGG - chr7_2:83562834-83562853 None:intergenic 30.0%
! TTTGACTTTGCACATACATT+TGG - chr7_2:83562876-83562895 None:intergenic 30.0%
TCCTCTTGTATTAAATCTCA+AGG + chr7_2:83563046-83563065 Msa1083270:intron 30.0%
ATACTCAATAGAAATAACCC+AGG - chr7_2:83563425-83563444 None:intergenic 30.0%
! TTCCCCTTTTTAACATAAAG+TGG - chr7_2:83563498-83563517 None:intergenic 30.0%
AAAGGGGAAAATATGTGAAA+AGG + chr7_2:83563509-83563528 Msa1083270:intron 30.0%
AAGGGGAAAATATGTGAAAA+GGG + chr7_2:83563510-83563529 Msa1083270:intron 30.0%
CATGAACAAGATTATTGAGA+AGG - chr7_2:83563972-83563991 None:intergenic 30.0%
TCTCTCCAAAAGATCGAAAA+TGG + chr7_2:83562398-83562417 Msa1083270:exon 35.0%
CTCTCCAAAAGATCGAAAAT+GGG + chr7_2:83562399-83562418 Msa1083270:exon 35.0%
AGATAGCATAGAGAATTCCA+GGG - chr7_2:83562639-83562658 None:intergenic 35.0%
TAGATAGCATAGAGAATTCC+AGG - chr7_2:83562640-83562659 None:intergenic 35.0%
CAAATGCTGAATTGATCACT+TGG - chr7_2:83562671-83562690 None:intergenic 35.0%
GCCTTGAGATTTAATACAAG+AGG - chr7_2:83563050-83563069 None:intergenic 35.0%
CAATAGAAATAACCCAGGTT+TGG - chr7_2:83563420-83563439 None:intergenic 35.0%
!! AATTTTGAGTGTGTTTGAGC+CGG - chr7_2:83563451-83563470 None:intergenic 35.0%
CAGACAGCATATAATGATCT+GGG - chr7_2:83563624-83563643 None:intergenic 35.0%
ACAGACAGCATATAATGATC+TGG - chr7_2:83563625-83563644 None:intergenic 35.0%
!!! TCATTGTTTTTGTTGACAGG+TGG + chr7_2:83563741-83563760 Msa1083270:intron 35.0%
TGGATCATACATAGTTGTCA+GGG + chr7_2:83563761-83563780 Msa1083270:three_prime_UTR 35.0%
GAAACCATGTAACATGTATG+AGG - chr7_2:83563788-83563807 None:intergenic 35.0%
AAGCTTATGAACTCTAGCAA+TGG + chr7_2:83563918-83563937 Msa1083270:three_prime_UTR 35.0%
TCTCTCCAAAAGATCGAAAA+TGG + chr7_2:83562398-83562417 Msa1083270:exon 35.0%
CTCTCCAAAAGATCGAAAAT+GGG + chr7_2:83562399-83562418 Msa1083270:exon 35.0%
AGATAGCATAGAGAATTCCA+GGG - chr7_2:83562639-83562658 None:intergenic 35.0%
TAGATAGCATAGAGAATTCC+AGG - chr7_2:83562640-83562659 None:intergenic 35.0%
CAAATGCTGAATTGATCACT+TGG - chr7_2:83562671-83562690 None:intergenic 35.0%
GCCTTGAGATTTAATACAAG+AGG - chr7_2:83563050-83563069 None:intergenic 35.0%
CAATAGAAATAACCCAGGTT+TGG - chr7_2:83563420-83563439 None:intergenic 35.0%
!! AATTTTGAGTGTGTTTGAGC+CGG - chr7_2:83563451-83563470 None:intergenic 35.0%
CAGACAGCATATAATGATCT+GGG - chr7_2:83563624-83563643 None:intergenic 35.0%
ACAGACAGCATATAATGATC+TGG - chr7_2:83563625-83563644 None:intergenic 35.0%
!!! TCATTGTTTTTGTTGACAGG+TGG + chr7_2:83563741-83563760 Msa1083270:intron 35.0%
TGGATCATACATAGTTGTCA+GGG + chr7_2:83563761-83563780 Msa1083270:three_prime_UTR 35.0%
GAAACCATGTAACATGTATG+AGG - chr7_2:83563788-83563807 None:intergenic 35.0%
AAGCTTATGAACTCTAGCAA+TGG + chr7_2:83563918-83563937 Msa1083270:three_prime_UTR 35.0%
! AGTGCCCATTTTCGATCTTT+TGG - chr7_2:83562406-83562425 None:intergenic 40.0%
GTGTTATATAGGTGGAGTTC+TGG + chr7_2:83562581-83562600 Msa1083270:intron 40.0%
!!! TGTTTGGTGCTAACCCTTTT+TGG + chr7_2:83562607-83562626 Msa1083270:CDS 40.0%
! AAAAAAGCATGACACGAGGA+TGG - chr7_2:83562767-83562786 None:intergenic 40.0%
! GCATAAAAAAGCATGACACG+AGG - chr7_2:83562771-83562790 None:intergenic 40.0%
CTTTGCACATACATTTGGTC+TGG - chr7_2:83562871-83562890 None:intergenic 40.0%
! TTTTTGCTCATACTTGCGAC+CGG + chr7_2:83563230-83563249 Msa1083270:intron 40.0%
TCACATTGTGATTCCAAACC+TGG + chr7_2:83563404-83563423 Msa1083270:intron 40.0%
CACATTGTGATTCCAAACCT+GGG + chr7_2:83563405-83563424 Msa1083270:intron 40.0%
CATGAAAAGAAGAAGACGTG+TGG + chr7_2:83563580-83563599 Msa1083270:intron 40.0%
GTGGATCATACATAGTTGTC+AGG + chr7_2:83563760-83563779 Msa1083270:three_prime_UTR 40.0%
GGATCATACATAGTTGTCAG+GGG + chr7_2:83563762-83563781 Msa1083270:three_prime_UTR 40.0%
! AGTGCCCATTTTCGATCTTT+TGG - chr7_2:83562406-83562425 None:intergenic 40.0%
GTGTTATATAGGTGGAGTTC+TGG + chr7_2:83562581-83562600 Msa1083270:intron 40.0%
!!! TGTTTGGTGCTAACCCTTTT+TGG + chr7_2:83562607-83562626 Msa1083270:CDS 40.0%
! AAAAAAGCATGACACGAGGA+TGG - chr7_2:83562767-83562786 None:intergenic 40.0%
! GCATAAAAAAGCATGACACG+AGG - chr7_2:83562771-83562790 None:intergenic 40.0%
CTTTGCACATACATTTGGTC+TGG - chr7_2:83562871-83562890 None:intergenic 40.0%
! TTTTTGCTCATACTTGCGAC+CGG + chr7_2:83563230-83563249 Msa1083270:intron 40.0%
TCACATTGTGATTCCAAACC+TGG + chr7_2:83563404-83563423 Msa1083270:intron 40.0%
CACATTGTGATTCCAAACCT+GGG + chr7_2:83563405-83563424 Msa1083270:intron 40.0%
CATGAAAAGAAGAAGACGTG+TGG + chr7_2:83563580-83563599 Msa1083270:intron 40.0%
GTGGATCATACATAGTTGTC+AGG + chr7_2:83563760-83563779 Msa1083270:three_prime_UTR 40.0%
GGATCATACATAGTTGTCAG+GGG + chr7_2:83563762-83563781 Msa1083270:three_prime_UTR 40.0%
AACTTGAGGAAGACACCAAG+AGG - chr7_2:83562468-83562487 None:intergenic 45.0%
!! CTTGGTGTCTTCCTCAAGTT+TGG + chr7_2:83562468-83562487 Msa1083270:CDS 45.0%
TTACATGGCAGCCAAACTTG+AGG - chr7_2:83562482-83562501 None:intergenic 45.0%
TCCAGGGAGATAGCCAAAAA+GGG - chr7_2:83562623-83562642 None:intergenic 45.0%
TTCCAGGGAGATAGCCAAAA+AGG - chr7_2:83562624-83562643 None:intergenic 45.0%
AACTTGAGGAAGACACCAAG+AGG - chr7_2:83562468-83562487 None:intergenic 45.0%
!! CTTGGTGTCTTCCTCAAGTT+TGG + chr7_2:83562468-83562487 Msa1083270:CDS 45.0%
TTACATGGCAGCCAAACTTG+AGG - chr7_2:83562482-83562501 None:intergenic 45.0%
TCCAGGGAGATAGCCAAAAA+GGG - chr7_2:83562623-83562642 None:intergenic 45.0%
TTCCAGGGAGATAGCCAAAA+AGG - chr7_2:83562624-83562643 None:intergenic 45.0%
!! TAAATTAATAAATAATCAAT+TGG + chr7_2:83563082-83563101 Msa1083270:intron 5.0%
!! TAAATTAATAAATAATCAAT+TGG + chr7_2:83563082-83563101 Msa1083270:intron 5.0%
TGAGGAAGACACCAAGAGGA+GGG - chr7_2:83562464-83562483 None:intergenic 50.0%
TTGAGGAAGACACCAAGAGG+AGG - chr7_2:83562465-83562484 None:intergenic 50.0%
!!! ACCCTTTTTGGCTATCTCCC+TGG + chr7_2:83562619-83562638 Msa1083270:CDS 50.0%
GGGGCCTCATACATGTTACA+TGG + chr7_2:83563781-83563800 Msa1083270:three_prime_UTR 50.0%
TGAGGAAGACACCAAGAGGA+GGG - chr7_2:83562464-83562483 None:intergenic 50.0%
TTGAGGAAGACACCAAGAGG+AGG - chr7_2:83562465-83562484 None:intergenic 50.0%
!!! ACCCTTTTTGGCTATCTCCC+TGG + chr7_2:83562619-83562638 Msa1083270:CDS 50.0%
GGGGCCTCATACATGTTACA+TGG + chr7_2:83563781-83563800 Msa1083270:three_prime_UTR 50.0%
ACCAAGAGGAGGGAGGATGA+TGG - chr7_2:83562454-83562473 None:intergenic 55.0%
!! GGTGGAGTTCTGGCTCTGTT+TGG + chr7_2:83562591-83562610 Msa1083270:intron 55.0%
TTGCTCATACTTGCGACCGG+AGG + chr7_2:83563233-83563252 Msa1083270:intron 55.0%
TGCTCATACTTGCGACCGGA+GGG + chr7_2:83563234-83563253 Msa1083270:intron 55.0%
ACCAAGAGGAGGGAGGATGA+TGG - chr7_2:83562454-83562473 None:intergenic 55.0%
!! GGTGGAGTTCTGGCTCTGTT+TGG + chr7_2:83562591-83562610 Msa1083270:intron 55.0%
TTGCTCATACTTGCGACCGG+AGG + chr7_2:83563233-83563252 Msa1083270:intron 55.0%
TGCTCATACTTGCGACCGGA+GGG + chr7_2:83563234-83563253 Msa1083270:intron 55.0%
GCCATCATCCTCCCTCCTCT+TGG + chr7_2:83562450-83562469 Msa1083270:CDS 60.0%
GGAAGACACCAAGAGGAGGG+AGG - chr7_2:83562461-83562480 None:intergenic 60.0%
GCCATCATCCTCCCTCCTCT+TGG + chr7_2:83562450-83562469 Msa1083270:CDS 60.0%
GGAAGACACCAAGAGGAGGG+AGG - chr7_2:83562461-83562480 None:intergenic 60.0%
! GCGACCGGAGGGTGTACGTA+CGG + chr7_2:83563245-83563264 Msa1083270:intron 65.0%
! CGACCGGAGGGTGTACGTAC+GGG + chr7_2:83563246-83563265 Msa1083270:intron 65.0%
ACGCCCGTACGTACACCCTC+CGG - chr7_2:83563252-83563271 None:intergenic 65.0%
! GCGACCGGAGGGTGTACGTA+CGG + chr7_2:83563245-83563264 Msa1083270:intron 65.0%
! CGACCGGAGGGTGTACGTAC+GGG + chr7_2:83563246-83563265 Msa1083270:intron 65.0%
ACGCCCGTACGTACACCCTC+CGG - chr7_2:83563252-83563271 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 83562298 83564029 83562298 ID=Msa1083270;Name=Msa1083270
chr7_2 mRNA 83562298 83564029 83562298 ID=Msa1083270-mRNA-1;Parent=Msa1083270;Name=Msa1083270-mRNA-1;_AED=0.03;_eAED=0.03;_QI=119|1|1|1|0.5|0.33|3|284|54
chr7_2 exon 83562298 83562497 83562298 ID=Msa1083270-mRNA-1:exon:21913;Parent=Msa1083270-mRNA-1
chr7_2 exon 83562592 83562689 83562592 ID=Msa1083270-mRNA-1:exon:21914;Parent=Msa1083270-mRNA-1
chr7_2 exon 83563760 83564029 83563760 ID=Msa1083270-mRNA-1:exon:21915;Parent=Msa1083270-mRNA-1
chr7_2 five_prime_UTR 83562298 83562416 83562298 ID=Msa1083270-mRNA-1:five_prime_utr;Parent=Msa1083270-mRNA-1
chr7_2 CDS 83562417 83562497 83562417 ID=Msa1083270-mRNA-1:cds;Parent=Msa1083270-mRNA-1
chr7_2 CDS 83562592 83562675 83562592 ID=Msa1083270-mRNA-1:cds;Parent=Msa1083270-mRNA-1
chr7_2 three_prime_UTR 83562676 83562689 83562676 ID=Msa1083270-mRNA-1:three_prime_utr;Parent=Msa1083270-mRNA-1
chr7_2 three_prime_UTR 83563760 83564029 83563760 ID=Msa1083270-mRNA-1:three_prime_utr;Parent=Msa1083270-mRNA-1
Gene Sequence

>Msa1083270

ATGGGCACTGCTACATGCATCGATATCATTGTTGCCATCATCCTCCCTCCTCTTGGTGTCTTCCTCAAGTTTGGCTGCCATGTGGAGTTCTGGCTCTGTTTGGTGCTAACCCTTTTTGGCTATCTCCCTGGAATTCTCTATGCTATCTATGCTATTACCAAGTGA
Protein sequence

>Msa1083270

MGTATCIDIIVAIILPPLGVFLKFGCHVEFWLCLVLTLFGYLPGILYAIYAITK*