AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0044320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044320 MtrunA17_Chr1g0210861 94.237 295 14 3 4 298 5 296 0.0 507
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044320 AT4G24175.1 49.362 235 110 3 73 298 67 301 2.33e-66 210
Msa0044320 AT4G24175.2 58.197 122 45 1 73 188 67 188 6.05e-40 139

Find 83 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACCATGCATTGTTTAAT+TGG 0.131679 1_1:-75856648 Msa0044320:three_prime_UTR
AAGCAAAACGTGCTGTTAAA+TGG 0.180888 1_1:-75859697 Msa0044320:CDS
CTTAAGTATGCGTTTGATTT+GGG 0.220486 1_1:+75859646 None:intergenic
CTGCAAGCTTTAACTGGCTT+GGG 0.238458 1_1:-75858701 Msa0044320:CDS
GGGTTGCAGGGTGGTTTCTT+TGG 0.241314 1_1:-75859546 Msa0044320:intron
GAATGTGGAACCGGAATTAA+TGG 0.241972 1_1:-75858765 Msa0044320:CDS
TTAATAACTAGAATAGTTAA+TGG 0.246308 1_1:-75856598 Msa0044320:three_prime_UTR
TTTAATTGGGATACATGATA+TGG 0.250940 1_1:-75856634 Msa0044320:three_prime_UTR
ACTTAAGTATGCGTTTGATT+TGG 0.270394 1_1:+75859645 None:intergenic
TAAGAGCTTCAAAGACAATT+TGG 0.326397 1_1:+75859522 None:intergenic
AAGGAGCTGCAAGCTTTAAC+TGG 0.329869 1_1:-75858707 Msa0044320:CDS
TTAAAGCTTGCAGCTCCTTA+TGG 0.340886 1_1:+75858711 None:intergenic
TGAAGCTCTTATGTTGGTTA+AGG 0.347145 1_1:-75859510 Msa0044320:intron
ATTAATCCGTCCATTAATTC+CGG 0.350389 1_1:+75858755 None:intergenic
TTGAACTGAATAAACTTCAT+TGG 0.358907 1_1:+75857370 None:intergenic
CGTATCTTTGTGGATTGTTC+TGG 0.359479 1_1:+75859842 None:intergenic
AATGAAGTTTATTCAGTTCA+AGG 0.362430 1_1:-75857368 Msa0044320:CDS
CAAGTAACAAGGTGGTTTGA+TGG 0.384351 1_1:-75857419 Msa0044320:CDS
AAGTCGAGAAAGCAGAGATT+AGG 0.387346 1_1:-75856741 Msa0044320:CDS
AGCAAAACGTGCTGTTAAAT+GGG 0.390825 1_1:-75859696 Msa0044320:CDS
TAACCATGCATTGTTTAATT+GGG 0.393245 1_1:-75856647 Msa0044320:three_prime_UTR
AGTCGAGAAAGCAGAGATTA+GGG 0.396363 1_1:-75856740 Msa0044320:CDS
GTTACTTGACTATCATCATA+AGG 0.403754 1_1:+75857434 None:intergenic
AAGAAGTAGGGTGGTGGTGG+TGG 0.407530 1_1:+75859921 None:intergenic
TGGAAGAAGTAGGGTGGTGG+TGG 0.425595 1_1:+75859918 None:intergenic
GCTGCAAGCTTTAACTGGCT+TGG 0.428841 1_1:-75858702 Msa0044320:CDS
AATTTAGCAGTGGAAGAAGT+AGG 0.431717 1_1:+75859908 None:intergenic
TTCTTCTTCTTCCTCGGGAG+CGG 0.442048 1_1:+75859760 None:intergenic
TTCTTCTTCCTCGGGAGCGG+TGG 0.451245 1_1:+75859763 None:intergenic
CTTCACGCTTCAATTGGTTG+CGG 0.456802 1_1:+75859717 None:intergenic
TCATCATCCTCAGGATCATC+AGG 0.461465 1_1:+75858677 None:intergenic
CGGCGTCAGTTCAATTATAT+AGG 0.461984 1_1:-75859339 Msa0044320:intron
TTGTCTCAGGAAAGTTGTTA+CGG 0.463853 1_1:-75858787 Msa0044320:intron
GATTGTTCTGGTGATGATGT+TGG 0.469722 1_1:+75859854 None:intergenic
AACAAAGGATTCTGACCATA+AGG 0.472766 1_1:-75858726 Msa0044320:CDS
CGGATGTTCGTGAAGGGAGG+CGG 0.476758 1_1:-75859359 Msa0044320:CDS
TGAGCCAACAAGTAGTATTA+CGG 0.477051 1_1:-75859979 Msa0044320:CDS
CGCCTCCCTTCACGAACATC+CGG 0.479937 1_1:+75859360 None:intergenic
TTTGATTTGGGGAGGAGAGA+AGG 0.481642 1_1:+75859658 None:intergenic
AGCAGAGATTAGGGCTAAGA+AGG 0.485364 1_1:-75856731 Msa0044320:CDS
AGAGAAACGACGTATCTTTG+TGG 0.489110 1_1:+75859832 None:intergenic
GTTGTTACGGAATGTGGAAC+CGG 0.489775 1_1:-75858774 Msa0044320:CDS
AGCCATGGCCAATGTCTTAG+AGG 0.494965 1_1:+75859956 None:intergenic
TATTACGGCCTCTAAGACAT+TGG 0.496331 1_1:-75859964 Msa0044320:CDS
AGGAAAGTTGTTACGGAATG+TGG 0.498289 1_1:-75858780 Msa0044320:CDS
GAGGCCGTAATACTACTTGT+TGG 0.504889 1_1:+75859975 None:intergenic
TGCAAGCTTTAACTGGCTTG+GGG 0.514688 1_1:-75858700 Msa0044320:CDS
ATTTAGCAGTGGAAGAAGTA+GGG 0.518017 1_1:+75859909 None:intergenic
TCTTCTTCCTCGGGAGCGGT+GGG 0.518718 1_1:+75859764 None:intergenic
TTTGCAGGAGTTGAGAAAGC+TGG 0.520673 1_1:-75856821 Msa0044320:intron
TGTCTTTGAAGCTCTTATGT+TGG 0.520855 1_1:-75859516 Msa0044320:CDS
AGGTGTCGAGTATGATCGCC+AGG 0.526328 1_1:-75857348 Msa0044320:intron
CAGTGGAAGAAGTAGGGTGG+TGG 0.529736 1_1:+75859915 None:intergenic
AAGTTCTCATCATCATCCTC+AGG 0.534020 1_1:+75858668 None:intergenic
ACGTGCTGTTAAATGGGGAA+TGG 0.548665 1_1:-75859690 Msa0044320:CDS
CGGATTAATAAAAGCAACAA+AGG 0.558941 1_1:-75858741 Msa0044320:CDS
TGGTGAAAGCGCAACAGCCA+TGG 0.562393 1_1:+75859941 None:intergenic
TATCCCAATTAAACAATGCA+TGG 0.568035 1_1:+75856644 None:intergenic
TGGGGCCGGATGTTCGTGAA+GGG 0.573714 1_1:-75859365 Msa0044320:CDS
TTTGCCACAGAGAATGGGGC+CGG 0.574948 1_1:-75859379 Msa0044320:intron
GTTTGATGGTTTGATAAACA+AGG 0.578235 1_1:-75857405 Msa0044320:CDS
TTAAGTATGCGTTTGATTTG+GGG 0.578299 1_1:+75859647 None:intergenic
GGCCGGATGTTCGTGAAGGG+AGG 0.578608 1_1:-75859362 Msa0044320:CDS
CTTGGGGCCTGATGATCCTG+AGG 0.584420 1_1:-75858684 Msa0044320:CDS
TTCATTACCCACCGCTCCCG+AGG 0.585183 1_1:-75859771 Msa0044320:CDS
CAATATTCTCTGAAAGACTA+CGG 0.592264 1_1:+75856692 None:intergenic
TGCTCAAGAAACGAAGGCTA+CGG 0.598891 1_1:-75856782 Msa0044320:CDS
GGCCTCTAAGACATTGGCCA+TGG 0.604231 1_1:-75859958 Msa0044320:CDS
AGTATGCGTTTGATTTGGGG+AGG 0.608860 1_1:+75859650 None:intergenic
GATAGAAACTGAAGACGAGA+AGG 0.608891 1_1:-75858645 Msa0044320:CDS
TAGCAGTGGAAGAAGTAGGG+TGG 0.611157 1_1:+75859912 None:intergenic
TTCTCTTTATCTGCATCTCG+CGG 0.612272 1_1:-75859815 Msa0044320:CDS
GAAGGCTACGGATGAAGAAG+AGG 0.613694 1_1:-75856770 Msa0044320:CDS
ATGGGGCCGGATGTTCGTGA+AGG 0.614685 1_1:-75859366 Msa0044320:CDS
TGAAGACGAGAAGGATGATG+AGG 0.623936 1_1:-75858636 Msa0044320:intron
GCAAAACGTGCTGTTAAATG+GGG 0.636327 1_1:-75859695 Msa0044320:CDS
TAGTGCAGAAAATTTAGCAG+TGG 0.642939 1_1:+75859898 None:intergenic
ACTACGGAGAAAACGAGTGA+GGG 0.650965 1_1:+75856708 None:intergenic
GTGGAACCGGAATTAATGGA+CGG 0.654248 1_1:-75858761 Msa0044320:CDS
GCACTTTGCTCAAGAAACGA+AGG 0.664552 1_1:-75856788 Msa0044320:CDS
GACTACGGAGAAAACGAGTG+AGG 0.672547 1_1:+75856707 None:intergenic
ATGATGATAGTCAAGTAACA+AGG 0.710187 1_1:-75857430 Msa0044320:CDS
ATGATAGTCAAGTAACAAGG+TGG 0.715164 1_1:-75857427 Msa0044320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTTTATAATAAAACATTA+TGG + chr1_1:75858008-75858027 None:intergenic 10.0%
!! TTAACACAATAATAAATATT+AGG - chr1_1:75858326-75858345 Msa0044320:intron 10.0%
!! TAACACAATAATAAATATTA+GGG - chr1_1:75858327-75858346 Msa0044320:intron 10.0%
!!! AACAATTTTATTGAAATATT+GGG + chr1_1:75858575-75858594 None:intergenic 10.0%
!! AAATATTAGATTATATTGTA+TGG + chr1_1:75859301-75859320 None:intergenic 10.0%
!! AAAAAATCATATATATTTAG+AGG - chr1_1:75859630-75859649 Msa0044320:intron 10.0%
!!! TTTTTGCTAAATTTTGTTTT+TGG - chr1_1:75856974-75856993 Msa0044320:intron 15.0%
!!! TTTTGCTAAATTTTGTTTTT+GGG - chr1_1:75856975-75856994 Msa0044320:intron 15.0%
!!! TGATGGTTAAAAATTTTATA+GGG - chr1_1:75858232-75858251 Msa0044320:intron 15.0%
!!! TATTGTGTTAAATATGTTTT+AGG + chr1_1:75858317-75858336 None:intergenic 15.0%
!! AACACAATAATAAATATTAG+GGG - chr1_1:75858328-75858347 Msa0044320:intron 15.0%
!!! GAACAATTTTATTGAAATAT+TGG + chr1_1:75858576-75858595 None:intergenic 15.0%
!! TTAATAACTAGAATAGTTAA+TGG - chr1_1:75859943-75859962 Msa0044320:CDS 15.0%
!!! AAGTTGAAACTTTTCAAAAT+GGG + chr1_1:75856956-75856975 None:intergenic 20.0%
!!! AAAGTTGAAACTTTTCAAAA+TGG + chr1_1:75856957-75856976 None:intergenic 20.0%
!! ATTTCAAGATGAAAAAGAAA+AGG + chr1_1:75857063-75857082 None:intergenic 20.0%
!!! AAACAACTATTTTATGCAAT+TGG - chr1_1:75857530-75857549 Msa0044320:intron 20.0%
!! ATAATTAATGCAACACAAAT+TGG + chr1_1:75857594-75857613 None:intergenic 20.0%
!!! TAAGTTGATTAGAATTATTG+TGG - chr1_1:75857677-75857696 Msa0044320:intron 20.0%
!!! ACATGAATTGACTTAAAAAT+AGG - chr1_1:75858200-75858219 Msa0044320:intron 20.0%
!!! CATGAATTGACTTAAAAATA+GGG - chr1_1:75858201-75858220 Msa0044320:intron 20.0%
!!! AAATTTTTAACCATCACTTT+TGG + chr1_1:75858228-75858247 None:intergenic 20.0%
!!! GTGATGGTTAAAAATTTTAT+AGG - chr1_1:75858231-75858250 Msa0044320:intron 20.0%
!!! TGAAAAGTTGGTATATTTAT+AGG - chr1_1:75858289-75858308 Msa0044320:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - chr1_1:75858290-75858309 Msa0044320:intron 20.0%
!!! AAGTTAGTTTGTTTGTTATT+TGG - chr1_1:75858365-75858384 Msa0044320:intron 20.0%
!!! AGTTAGTTTGTTTGTTATTT+GGG - chr1_1:75858366-75858385 Msa0044320:intron 20.0%
!!! TTTTATTGAAATATTGGGAA+AGG + chr1_1:75858570-75858589 None:intergenic 20.0%
!! AAAAGATAAGATACATCATA+AGG + chr1_1:75859064-75859083 None:intergenic 20.0%
!! ATTCACAAGTAATATAAACT+TGG + chr1_1:75859328-75859347 None:intergenic 20.0%
!! AAATTTCTTTCTCATTATGA+AGG - chr1_1:75859533-75859552 Msa0044320:CDS 20.0%
! ACACATTTAAATCAGTAAAG+CGG - chr1_1:75857287-75857306 Msa0044320:intron 25.0%
! AAAAATGGTACTATAAGCTA+AGG + chr1_1:75857632-75857651 None:intergenic 25.0%
! TGAATGACTATCAACAAAAA+TGG + chr1_1:75857647-75857666 None:intergenic 25.0%
! ATATAATTTGATCCATGTAG+CGG + chr1_1:75857984-75858003 None:intergenic 25.0%
! AAAACTATCAGAGAAAGATT+TGG + chr1_1:75858055-75858074 None:intergenic 25.0%
!!! ATTGGTCTTCTAATCTTTTT+TGG - chr1_1:75858125-75858144 Msa0044320:intron 25.0%
!!! TTGGTCTTCTAATCTTTTTT+GGG - chr1_1:75858126-75858145 Msa0044320:intron 25.0%
! TAGAGAGTAAAATGAAAAGT+TGG - chr1_1:75858277-75858296 Msa0044320:intron 25.0%
!! TATGTTAGGAACATTTCTTT+TGG + chr1_1:75858644-75858663 None:intergenic 25.0%
! GTGTTTGATTGTATAGTTAA+AGG - chr1_1:75858683-75858702 Msa0044320:CDS 25.0%
! TATAGTTAAAGGTGAGTTAA+AGG - chr1_1:75858694-75858713 Msa0044320:CDS 25.0%
! GTTAAAGGCAAAATGATTTA+TGG - chr1_1:75858709-75858728 Msa0044320:CDS 25.0%
! TTGAGTATAAAAGTTACCTT+TGG - chr1_1:75858770-75858789 Msa0044320:CDS 25.0%
!!! TGAAGAATTGAAGTTGATTT+TGG + chr1_1:75858877-75858896 None:intergenic 25.0%
! TAGGAAATTTAGTGCATATT+TGG + chr1_1:75858930-75858949 None:intergenic 25.0%
!! TATCTTTTGAGCATTTTATC+AGG - chr1_1:75859076-75859095 Msa0044320:intron 25.0%
! TTGAACTGAATAAACTTCAT+TGG + chr1_1:75859174-75859193 None:intergenic 25.0%
! AATGAAGTTTATTCAGTTCA+AGG - chr1_1:75859173-75859192 Msa0044320:intron 25.0%
! TCAACCAAGTTTATATTAAC+TGG - chr1_1:75859449-75859468 Msa0044320:intron 25.0%
! TTCACCAGTTAATATAAACT+TGG + chr1_1:75859456-75859475 None:intergenic 25.0%
! TTTATGTGATTCCTATCAAA+TGG - chr1_1:75859477-75859496 Msa0044320:intron 25.0%
!! AAAATATCTTCATCTTTTGC+AGG - chr1_1:75859705-75859724 Msa0044320:CDS 25.0%
! TTAACCATGCATTGTTTAAT+TGG - chr1_1:75859893-75859912 Msa0044320:CDS 25.0%
! TAACCATGCATTGTTTAATT+GGG - chr1_1:75859894-75859913 Msa0044320:CDS 25.0%
! TTTAATTGGGATACATGATA+TGG - chr1_1:75859907-75859926 Msa0044320:CDS 25.0%
!! TTAAGTATGCGTTTGATTTG+GGG + chr1_1:75856897-75856916 None:intergenic 30.0%
! CTTAAGTATGCGTTTGATTT+GGG + chr1_1:75856898-75856917 None:intergenic 30.0%
ACTTAAGTATGCGTTTGATT+TGG + chr1_1:75856899-75856918 None:intergenic 30.0%
!!! AAATTTTGTTTTTGGGTTGC+AGG - chr1_1:75856982-75857001 Msa0044320:intron 30.0%
!!! AATTTTGTTTTTGGGTTGCA+GGG - chr1_1:75856983-75857002 Msa0044320:intron 30.0%
TAAGAGCTTCAAAGACAATT+TGG + chr1_1:75857022-75857041 None:intergenic 30.0%
AATTGTTCTATTTGTGCTTG+TGG - chr1_1:75857086-75857105 Msa0044320:intron 30.0%
GTGAAAGTTTAATGAAGAGA+AGG - chr1_1:75857129-75857148 Msa0044320:intron 30.0%
ATGTACTAAATATCGTCTTG+TGG + chr1_1:75857446-75857465 None:intergenic 30.0%
GTGTTGCATTAATTATGAGT+TGG - chr1_1:75857598-75857617 Msa0044320:intron 30.0%
TGATAGTCATTCAATAGATG+TGG - chr1_1:75857654-75857673 Msa0044320:intron 30.0%
CATACATAAATTGTTGTCTC+AGG - chr1_1:75857741-75857760 Msa0044320:intron 30.0%
ATTAATCCGTCCATTAATTC+CGG + chr1_1:75857789-75857808 None:intergenic 30.0%
CGGATTAATAAAAGCAACAA+AGG - chr1_1:75857800-75857819 Msa0044320:intron 30.0%
CTCCTTACTACATAATCTAT+TGG - chr1_1:75858107-75858126 Msa0044320:intron 30.0%
GACCAATAGATTATGTAGTA+AGG + chr1_1:75858112-75858131 None:intergenic 30.0%
! GTTGTTGTTATGAGTTGTTA+GGG - chr1_1:75858388-75858407 Msa0044320:intron 30.0%
AGGGAAGTTAGTTAGTTATT+TGG - chr1_1:75858407-75858426 Msa0044320:intron 30.0%
GTGCAGAATTGAATAAACAA+AGG + chr1_1:75858598-75858617 None:intergenic 30.0%
TAGACATGAACTCATATGTT+AGG + chr1_1:75858658-75858677 None:intergenic 30.0%
AAGGCAAAATGATTTATGGT+TGG - chr1_1:75858713-75858732 Msa0044320:CDS 30.0%
AGTATAAAAGTTACCTTTGG+AGG - chr1_1:75858773-75858792 Msa0044320:CDS 30.0%
CAAGTTAGAATCAGTTATAG+AGG - chr1_1:75858818-75858837 Msa0044320:intron 30.0%
! AGGCTAAATCAATTTTTGTC+AGG - chr1_1:75858838-75858857 Msa0044320:intron 30.0%
!! AGGAGATAAAGGTATTTATG+CGG + chr1_1:75858969-75858988 None:intergenic 30.0%
CTTTATCTCCTGTCATATTA+GGG - chr1_1:75858978-75858997 Msa0044320:intron 30.0%
TTTATCTCCTGTCATATTAG+GGG - chr1_1:75858979-75858998 Msa0044320:intron 30.0%
GTTACTTGACTATCATCATA+AGG + chr1_1:75859110-75859129 None:intergenic 30.0%
ATGATGATAGTCAAGTAACA+AGG - chr1_1:75859111-75859130 Msa0044320:intron 30.0%
! GTTTGATGGTTTGATAAACA+AGG - chr1_1:75859136-75859155 Msa0044320:intron 30.0%
TTCTGAACAAGACTAATTAC+TGG - chr1_1:75859271-75859290 Msa0044320:intron 30.0%
! CAATATTCTCTGAAAGACTA+CGG + chr1_1:75859852-75859871 None:intergenic 30.0%
TATCCCAATTAAACAATGCA+TGG + chr1_1:75859900-75859919 None:intergenic 30.0%
!!! CCTAGCACAAATATTTTTAG+AGG + chr1_1:75860013-75860032 None:intergenic 30.0%
TGAGCCAACAAGTAGTATTA+CGG - chr1_1:75856562-75856581 Msa0044320:three_prime_UTR 35.0%
ATTTAGCAGTGGAAGAAGTA+GGG + chr1_1:75856635-75856654 None:intergenic 35.0%
AATTTAGCAGTGGAAGAAGT+AGG + chr1_1:75856636-75856655 None:intergenic 35.0%
TAGTGCAGAAAATTTAGCAG+TGG + chr1_1:75856646-75856665 None:intergenic 35.0%
ATCTTCTTCTTCTTCTTCCT+CGG + chr1_1:75856790-75856809 None:intergenic 35.0%
! AAGCAAAACGTGCTGTTAAA+TGG - chr1_1:75856844-75856863 Msa0044320:intron 35.0%
! AGCAAAACGTGCTGTTAAAT+GGG - chr1_1:75856845-75856864 Msa0044320:intron 35.0%
!! TGTCTTTGAAGCTCTTATGT+TGG - chr1_1:75857025-75857044 Msa0044320:intron 35.0%
! TGAAGCTCTTATGTTGGTTA+AGG - chr1_1:75857031-75857050 Msa0044320:intron 35.0%
CATTTAAATCAGTAAAGCGG+AGG - chr1_1:75857290-75857309 Msa0044320:intron 35.0%
TAATGCAACATGCATACATG+AGG - chr1_1:75857329-75857348 Msa0044320:intron 35.0%
AAATCAGTGTTGTCAAACAG+CGG - chr1_1:75857378-75857397 Msa0044320:CDS 35.0%
TTGTCTCAGGAAAGTTGTTA+CGG - chr1_1:75857754-75857773 Msa0044320:intron 35.0%
AACAAAGGATTCTGACCATA+AGG - chr1_1:75857815-75857834 Msa0044320:intron 35.0%
AAAATAGGGACCAAAAGTGA+TGG - chr1_1:75858215-75858234 Msa0044320:intron 35.0%
TTATAGGGACTAAAAGTCGA+AGG - chr1_1:75858247-75858266 Msa0044320:intron 35.0%
! GGTTGTTGTTATGAGTTGTT+AGG - chr1_1:75858387-75858406 Msa0044320:intron 35.0%
! TTTGTAGTTTTTGCCTCCAA+AGG + chr1_1:75858789-75858808 None:intergenic 35.0%
!! GGAGATAAAGGTATTTATGC+GGG + chr1_1:75858968-75858987 None:intergenic 35.0%
CCTAATATGACAGGAGATAA+AGG + chr1_1:75858980-75858999 None:intergenic 35.0%
CCTTTATCTCCTGTCATATT+AGG - chr1_1:75858977-75858996 Msa0044320:intron 35.0%
TTATCTCCTGTCATATTAGG+GGG - chr1_1:75858980-75858999 Msa0044320:intron 35.0%
ATGATAGTCAAGTAACAAGG+TGG - chr1_1:75859114-75859133 Msa0044320:intron 35.0%
GCATAGTGCAAAATATTACC+TGG + chr1_1:75859214-75859233 None:intergenic 35.0%
GTGAAACTCACTAAAAACGT+AGG + chr1_1:75859381-75859400 None:intergenic 35.0%
AGGCTTATTCTCCATTTGAT+AGG + chr1_1:75859491-75859510 None:intergenic 35.0%
GTGAATCTCACTAAAAACGT+AGG + chr1_1:75859511-75859530 None:intergenic 35.0%
!! TATTACGGCCTCTAAGACAT+TGG - chr1_1:75856577-75856596 Msa0044320:three_prime_UTR 40.0%
! GATTGTTCTGGTGATGATGT+TGG + chr1_1:75856690-75856709 None:intergenic 40.0%
! CGTATCTTTGTGGATTGTTC+TGG + chr1_1:75856702-75856721 None:intergenic 40.0%
AGAGAAACGACGTATCTTTG+TGG + chr1_1:75856712-75856731 None:intergenic 40.0%
TTCTCTTTATCTGCATCTCG+CGG - chr1_1:75856726-75856745 Msa0044320:CDS 40.0%
TCTTCTTCTTCTTCTTCCTC+GGG + chr1_1:75856789-75856808 None:intergenic 40.0%
! CAATTGGTTGCGGCTTTTAA+TGG + chr1_1:75856817-75856836 None:intergenic 40.0%
! GTTTTGCTTCACGCTTCAAT+TGG + chr1_1:75856833-75856852 None:intergenic 40.0%
! GCAAAACGTGCTGTTAAATG+GGG - chr1_1:75856846-75856865 Msa0044320:intron 40.0%
!!! TGTTGTTTTGCCACAGAGAA+TGG - chr1_1:75857156-75857175 Msa0044320:intron 40.0%
!! GTTGTTTTGCCACAGAGAAT+GGG - chr1_1:75857157-75857176 Msa0044320:intron 40.0%
!! TTGTTTTGCCACAGAGAATG+GGG - chr1_1:75857158-75857177 Msa0044320:intron 40.0%
CGGCGTCAGTTCAATTATAT+AGG - chr1_1:75857202-75857221 Msa0044320:intron 40.0%
AGGAAAGTTGTTACGGAATG+TGG - chr1_1:75857761-75857780 Msa0044320:intron 40.0%
GAATGTGGAACCGGAATTAA+TGG - chr1_1:75857776-75857795 Msa0044320:intron 40.0%
TTAAAGCTTGCAGCTCCTTA+TGG + chr1_1:75857833-75857852 None:intergenic 40.0%
AAGTTCTCATCATCATCCTC+AGG + chr1_1:75857876-75857895 None:intergenic 40.0%
GATAGAAACTGAAGACGAGA+AGG - chr1_1:75857896-75857915 Msa0044320:intron 40.0%
GGATGATGAGGTATGATGTT+AGG - chr1_1:75857917-75857936 Msa0044320:intron 40.0%
TAGAGTACACTCTGTTGTGA+AGG - chr1_1:75858504-75858523 Msa0044320:intron 40.0%
AGAGTACACTCTGTTGTGAA+GGG - chr1_1:75858505-75858524 Msa0044320:intron 40.0%
GGGAAAGGATAAAAGAGAAC+AGG + chr1_1:75858555-75858574 None:intergenic 40.0%
ATTACACCCCCTAATATGAC+AGG + chr1_1:75858989-75859008 None:intergenic 40.0%
CAAGTAACAAGGTGGTTTGA+TGG - chr1_1:75859122-75859141 Msa0044320:intron 40.0%
AGGCTTACTCTCTACTTTGT+AGG + chr1_1:75859361-75859380 None:intergenic 40.0%
AAGTCGAGAAAGCAGAGATT+AGG - chr1_1:75859800-75859819 Msa0044320:CDS 40.0%
AGTCGAGAAAGCAGAGATTA+GGG - chr1_1:75859801-75859820 Msa0044320:CDS 40.0%
GAGGCCGTAATACTACTTGT+TGG + chr1_1:75856569-75856588 None:intergenic 45.0%
CTTCACGCTTCAATTGGTTG+CGG + chr1_1:75856827-75856846 None:intergenic 45.0%
! ACGTGCTGTTAAATGGGGAA+TGG - chr1_1:75856851-75856870 Msa0044320:intron 45.0%
!! TTTGATTTGGGGAGGAGAGA+AGG + chr1_1:75856886-75856905 None:intergenic 45.0%
!! AGTATGCGTTTGATTTGGGG+AGG + chr1_1:75856894-75856913 None:intergenic 45.0%
!!! TTTGTTTTTGGGTTGCAGGG+TGG - chr1_1:75856986-75857005 Msa0044320:intron 45.0%
GTTGTTACGGAATGTGGAAC+CGG - chr1_1:75857767-75857786 Msa0044320:intron 45.0%
GTGGAACCGGAATTAATGGA+CGG - chr1_1:75857780-75857799 Msa0044320:intron 45.0%
! AAGGAGCTGCAAGCTTTAAC+TGG - chr1_1:75857834-75857853 Msa0044320:intron 45.0%
! CTGCAAGCTTTAACTGGCTT+GGG - chr1_1:75857840-75857859 Msa0044320:intron 45.0%
!! TGCAAGCTTTAACTGGCTTG+GGG - chr1_1:75857841-75857860 Msa0044320:intron 45.0%
TCATCATCCTCAGGATCATC+AGG + chr1_1:75857867-75857886 None:intergenic 45.0%
TGAAGACGAGAAGGATGATG+AGG - chr1_1:75857905-75857924 Msa0044320:intron 45.0%
GAGTAGATCACTAGAGACAG+AGG + chr1_1:75858088-75858107 None:intergenic 45.0%
GAGTACACTCTGTTGTGAAG+GGG - chr1_1:75858506-75858525 Msa0044320:intron 45.0%
AGGAGAGAAACTCTCCTCAA+GGG + chr1_1:75858535-75858554 None:intergenic 45.0%
! CTTGTTCAGAAAGCACAAGC+AGG + chr1_1:75859262-75859281 None:intergenic 45.0%
TTTGCAGGAGTTGAGAAAGC+TGG - chr1_1:75859720-75859739 Msa0044320:CDS 45.0%
GCACTTTGCTCAAGAAACGA+AGG - chr1_1:75859753-75859772 Msa0044320:CDS 45.0%
TGCTCAAGAAACGAAGGCTA+CGG - chr1_1:75859759-75859778 Msa0044320:CDS 45.0%
AGCAGAGATTAGGGCTAAGA+AGG - chr1_1:75859810-75859829 Msa0044320:CDS 45.0%
ACTACGGAGAAAACGAGTGA+GGG + chr1_1:75859836-75859855 None:intergenic 45.0%
!!! TTTTATTATAAACTATATTT+TGG - chr1_1:75858013-75858032 Msa0044320:intron 5.0%
AGCCATGGCCAATGTCTTAG+AGG + chr1_1:75856588-75856607 None:intergenic 50.0%
TAGCAGTGGAAGAAGTAGGG+TGG + chr1_1:75856632-75856651 None:intergenic 50.0%
TTCTTCTTCTTCCTCGGGAG+CGG + chr1_1:75856784-75856803 None:intergenic 50.0%
! GCTGCAAGCTTTAACTGGCT+TGG - chr1_1:75857839-75857858 Msa0044320:intron 50.0%
CCACTTAGTGGGAAAAGGCT+TGG + chr1_1:75857958-75857977 None:intergenic 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG - chr1_1:75857955-75857974 Msa0044320:intron 50.0%
GGACACCACTTAGTGGGAAA+AGG + chr1_1:75857963-75857982 None:intergenic 50.0%
!! TGTAGCGGACACCACTTAGT+GGG + chr1_1:75857969-75857988 None:intergenic 50.0%
!! ATGTAGCGGACACCACTTAG+TGG + chr1_1:75857970-75857989 None:intergenic 50.0%
ACTAAGTGGTGTCCGCTACA+TGG - chr1_1:75857969-75857988 Msa0044320:intron 50.0%
TTGTGAAGGGGAAACCCTTG+AGG - chr1_1:75858518-75858537 Msa0044320:intron 50.0%
CAGGAGAGAAACTCTCCTCA+AGG + chr1_1:75858536-75858555 None:intergenic 50.0%
CGGGCTCATGTCTAGTCAAT+AGG + chr1_1:75858949-75858968 None:intergenic 50.0%
! CTGAGCAGCGAACTTGTTTG+TGG + chr1_1:75859661-75859680 None:intergenic 50.0%
GAAGGCTACGGATGAAGAAG+AGG - chr1_1:75859771-75859790 Msa0044320:CDS 50.0%
GACTACGGAGAAAACGAGTG+AGG + chr1_1:75859837-75859856 None:intergenic 50.0%
!! GGCCTCTAAGACATTGGCCA+TGG - chr1_1:75856583-75856602 Msa0044320:three_prime_UTR 55.0%
! TGGTGAAAGCGCAACAGCCA+TGG + chr1_1:75856603-75856622 None:intergenic 55.0%
!! AAGAAGTAGGGTGGTGGTGG+TGG + chr1_1:75856623-75856642 None:intergenic 55.0%
! TGGAAGAAGTAGGGTGGTGG+TGG + chr1_1:75856626-75856645 None:intergenic 55.0%
CAGTGGAAGAAGTAGGGTGG+TGG + chr1_1:75856629-75856648 None:intergenic 55.0%
GGGTTGCAGGGTGGTTTCTT+TGG - chr1_1:75856995-75857014 Msa0044320:intron 55.0%
TTTGCCACAGAGAATGGGGC+CGG - chr1_1:75857162-75857181 Msa0044320:intron 55.0%
!! AGGTGTCGAGTATGATCGCC+AGG - chr1_1:75859193-75859212 Msa0044320:intron 55.0%
TTCATTACCCACCGCTCCCG+AGG - chr1_1:75856770-75856789 Msa0044320:CDS 60.0%
TCTTCTTCCTCGGGAGCGGT+GGG + chr1_1:75856780-75856799 None:intergenic 60.0%
TTCTTCTTCCTCGGGAGCGG+TGG + chr1_1:75856781-75856800 None:intergenic 60.0%
ACATCCGGCCCCATTCTCTG+TGG + chr1_1:75857169-75857188 None:intergenic 60.0%
ATGGGGCCGGATGTTCGTGA+AGG - chr1_1:75857175-75857194 Msa0044320:intron 60.0%
TGGGGCCGGATGTTCGTGAA+GGG - chr1_1:75857176-75857195 Msa0044320:intron 60.0%
CGCCTCCCTTCACGAACATC+CGG + chr1_1:75857184-75857203 None:intergenic 60.0%
CGGATGTTCGTGAAGGGAGG+CGG - chr1_1:75857182-75857201 Msa0044320:intron 60.0%
CTTGGGGCCTGATGATCCTG+AGG - chr1_1:75857857-75857876 Msa0044320:intron 60.0%
GGCCGGATGTTCGTGAAGGG+AGG - chr1_1:75857179-75857198 Msa0044320:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 75856531 75860032 75856531 ID=Msa0044320;Name=Msa0044320
chr1_1 mRNA 75856531 75860032 75856531 ID=Msa0044320-mRNA-1;Parent=Msa0044320;Name=Msa0044320-mRNA-1;_AED=0.09;_eAED=0.09;_QI=30|1|1|1|1|1|6|147|298
chr1_1 exon 75856531 75856836 75856531 ID=Msa0044320-mRNA-1:exon:25682;Parent=Msa0044320-mRNA-1
chr1_1 exon 75857349 75857465 75857349 ID=Msa0044320-mRNA-1:exon:25681;Parent=Msa0044320-mRNA-1
chr1_1 exon 75858637 75858800 75858637 ID=Msa0044320-mRNA-1:exon:25680;Parent=Msa0044320-mRNA-1
chr1_1 exon 75859340 75859391 75859340 ID=Msa0044320-mRNA-1:exon:25679;Parent=Msa0044320-mRNA-1
chr1_1 exon 75859511 75859559 75859511 ID=Msa0044320-mRNA-1:exon:25678;Parent=Msa0044320-mRNA-1
chr1_1 exon 75859647 75860032 75859647 ID=Msa0044320-mRNA-1:exon:25677;Parent=Msa0044320-mRNA-1
chr1_1 five_prime_UTR 75860003 75860032 75860003 ID=Msa0044320-mRNA-1:five_prime_utr;Parent=Msa0044320-mRNA-1
chr1_1 CDS 75859647 75860002 75859647 ID=Msa0044320-mRNA-1:cds;Parent=Msa0044320-mRNA-1
chr1_1 CDS 75859511 75859559 75859511 ID=Msa0044320-mRNA-1:cds;Parent=Msa0044320-mRNA-1
chr1_1 CDS 75859340 75859391 75859340 ID=Msa0044320-mRNA-1:cds;Parent=Msa0044320-mRNA-1
chr1_1 CDS 75858637 75858800 75858637 ID=Msa0044320-mRNA-1:cds;Parent=Msa0044320-mRNA-1
chr1_1 CDS 75857349 75857465 75857349 ID=Msa0044320-mRNA-1:cds;Parent=Msa0044320-mRNA-1
chr1_1 CDS 75856678 75856836 75856678 ID=Msa0044320-mRNA-1:cds;Parent=Msa0044320-mRNA-1
chr1_1 three_prime_UTR 75856531 75856677 75856531 ID=Msa0044320-mRNA-1:three_prime_utr;Parent=Msa0044320-mRNA-1
Gene Sequence

>Msa0044320

ATGAGCCAACAAGTAGTATTACGGCCTCTAAGACATTGGCCATGGCTGTTGCGCTTTCACCACCACCACCACCCTACTTCTTCCACTGCTAAATTTTCTGCACTATATCATCATCTTCTTCTTCTTCCAACATCATCACCAGAACAATCCACAAAGATACGTCGTTTCTCTTTATCTGCATCTCGCGGAAAACTTCGAAGAGCTGATTCTTCATTACCCACCGCTCCCGAGGAAGAAGAAGAAGAAGATGCTGCCATTAAAAGCCGCAACCAATTGAAGCGTGAAGCAAAACGTGCTGTTAAATGGGGAATGGATTTGTCTTCCTTCTCTCCTCCCCAAATCAAACGCATACTTAAGGTGGTTTCTTTGGACCAAATTGTCTTTGAAGCTCTTATGTTGGTTAAGAGAATGGGGCCGGATGTTCGTGAAGGGAGGCGGCGTCAGTTCAATTATATAGGAAAGTTGTTACGGAATGTGGAACCGGAATTAATGGACGGATTAATAAAAGCAACAAAGGATTCTGACCATAAGGAGCTGCAAGCTTTAACTGGCTTGGGGCCTGATGATCCTGAGGATGATGATGAGAACTTGATAGAAACTGAAGACGAGAAGGATGATGAGGAATCTAAGCCTTATGATGATAGTCAAGTAACAAGGTGGTTTGATGGTTTGATAAACAAGGACATTCAAATCACCAATGAAGTTTATTCAGTTCAAGGTGTCGAGTATGATCGCCAGGAGTTGAGAAAGCTGGTACGTAAAGTGCACTTTGCTCAAGAAACGAAGGCTACGGATGAAGAAGAGGAGAAAAAAGTCGAGAAAGCAGAGATTAGGGCTAAGAAGGCCCTCACTCGTTTTCTCCGTAGTCTTTCAGAGAATATTGTCAATGAACATTAG

Protein sequence

>Msa0044320

MSQQVVLRPLRHWPWLLRFHHHHHPTSSTAKFSALYHHLLLLPTSSPEQSTKIRRFSLSASRGKLRRADSSLPTAPEEEEEEDAAIKSRNQLKREAKRAVKWGMDLSSFSPPQIKRILKVVSLDQIVFEALMLVKRMGPDVREGRRRQFNYIGKLLRNVEPELMDGLIKATKDSDHKELQALTGLGPDDPEDDDENLIETEDEKDDEESKPYDDSQVTRWFDGLINKDIQITNEVYSVQGVEYDRQELRKLVRKVHFAQETKATDEEEEKKVEKAEIRAKKALTRFLRSLSENIVNEH*