AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1083600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083600 MtrunA17_Chr7g0272811 75.111 450 74 5 4 419 2 447 0.0 665
Msa1083600 MtrunA17_Chr2g0288091 66.385 473 107 7 1 421 32 504 0.0 614
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1083600 AT4G21770.1 52.740 438 121 7 46 420 58 472 1.50e-159 458
Msa1083600 AT4G21770.2 54.087 416 107 6 66 420 1 393 9.04e-156 446

Find 128 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTCAACAAGCATGAATT+TGG 0.218911 7_2:-83941106 Msa1083600:CDS
AAGAAACGGCTGTAATAAAT+TGG 0.246669 7_2:-83936969 Msa1083600:CDS
ACATTCATATATGAATTCTT+TGG 0.275373 7_2:+83936304 None:intergenic
GTTGCAGATCTGATTCAATT+TGG 0.281393 7_2:-83940801 Msa1083600:CDS
ACAATACATCTGTAAAGATT+TGG 0.281671 7_2:-83940939 Msa1083600:CDS
TCTGCAGTCAATAAATTTAC+AGG 0.294359 7_2:+83938469 None:intergenic
ACAACTAAGTGTTCAATTCT+TGG 0.294603 7_2:+83940983 None:intergenic
TGCTCTGCAGAGTTGCTAAA+AGG 0.301140 7_2:-83938526 Msa1083600:intron
CTGTCGTAGCCTCGGCGTTC+CGG 0.315206 7_2:-83941164 Msa1083600:CDS
TTCAAGCTTGTCAAATTTCA+TGG 0.315468 7_2:-83936906 Msa1083600:CDS
TGTAAAATCAACCTTCTTAC+TGG 0.321032 7_2:-83938313 Msa1083600:CDS
TACATAGTATCACCAATTAT+TGG 0.340825 7_2:+83937078 None:intergenic
ACTTGATCTTGGTCTATTAG+AGG 0.347209 7_2:-83936491 Msa1083600:three_prime_UTR
CAACAATGAGGTGAGAATTA+TGG 0.352096 7_2:+83936386 None:intergenic
CATTCATATATGAATTCTTT+GGG 0.352728 7_2:+83936305 None:intergenic
TTTACTCCTTCACGTTGAGC+TGG 0.355157 7_2:+83941235 None:intergenic
GAGGTGTTTGTTAAGTGATA+TGG 0.358711 7_2:+83941123 None:intergenic
GCTTGCAAGGCACCAATAAT+TGG 0.358878 7_2:-83937090 Msa1083600:CDS
AATCCTGGACTTAATCCATT+TGG 0.359578 7_2:-83937027 Msa1083600:CDS
GGGGAGTCCATAGTGTTAAA+AGG 0.359708 7_2:+83936581 None:intergenic
ACAGAGCTGGTTTGCCTTGG+TGG 0.361729 7_2:-83936864 Msa1083600:CDS
ATTGTATCTATACTTGATCT+TGG 0.368993 7_2:-83936502 Msa1083600:three_prime_UTR
GTAGCGGTTGGAGGAGGTTC+CGG 0.372880 7_2:+83940753 None:intergenic
ATGAAATTTGACAAGCTTGA+AGG 0.384279 7_2:+83936908 None:intergenic
TTACAGATGTATTGTAAAAC+AGG 0.388608 7_2:+83940947 None:intergenic
ATTTAGTCCAACAGCACATC+TGG 0.397876 7_2:+83936800 None:intergenic
GCAGCTTCTCCTTTACCAAT+TGG 0.403389 7_2:-83939280 Msa1083600:CDS
CAGCTGCCGCGGAACAAGAT+TGG 0.406189 7_2:+83941184 None:intergenic
GAAAATGAAGAGTGTGTACC+TGG 0.406289 7_2:+83936560 None:intergenic
CAACTGTCATGGGTGGATAT+AGG 0.416224 7_2:+83936272 None:intergenic
CTGATAAGTGTCTTATATTG+TGG 0.425243 7_2:-83938499 Msa1083600:CDS
TGCACTCGCAGGTAAGTTCC+TGG 0.426326 7_2:+83940597 None:intergenic
CGGCGTCATGCTTGTGATCA+AGG 0.427502 7_2:-83936644 Msa1083600:three_prime_UTR
CAAAGAAGCAACTGAACCAT+TGG 0.428367 7_2:-83940709 Msa1083600:CDS
ATTTACCTAGGATAACGCTT+GGG 0.431357 7_2:+83940567 None:intergenic
CACAATATAAGACACTTATC+AGG 0.431409 7_2:+83938500 None:intergenic
AGTCGAGGAGCCGTGTTAGT+AGG 0.435108 7_2:+83939235 None:intergenic
TGAAGGAGTAAAAGATAAGA+TGG 0.435507 7_2:-83941224 Msa1083600:exon
TTGAACAACAATAGCTGGCC+AGG 0.441571 7_2:+83938390 None:intergenic
AGGTGTTTGTTAAGTGATAT+GGG 0.442132 7_2:+83941124 None:intergenic
ATGAATTTGGTTGGTGTTGT+CGG 0.448484 7_2:-83941093 Msa1083600:CDS
GAAGCAATCGATCATACTTC+GGG 0.456347 7_2:+83941029 None:intergenic
CGCGGCAGCTGTCGTAGCCT+CGG 0.459951 7_2:-83941172 Msa1083600:CDS
GCTTCGAGAAATCTGACAAA+TGG 0.460197 7_2:-83936439 Msa1083600:three_prime_UTR
TTTACAGAGCTGGTTTGCCT+TGG 0.460289 7_2:-83936867 Msa1083600:CDS
AATATTGTGTTGAAGATTGT+GGG 0.461791 7_2:-83938363 Msa1083600:CDS
TAGCCTCGGCGTTCCGGATG+CGG 0.465407 7_2:-83941158 Msa1083600:CDS
AGCTCAATTTGCTGCTTGCA+AGG 0.465415 7_2:-83937103 Msa1083600:CDS
TTAGGTGCTATGAGATTGAC+TGG 0.466195 7_2:-83940461 Msa1083600:intron
GTAGCTTACTGTTTCGCTGA+TGG 0.466204 7_2:+83941051 None:intergenic
TCTTACTGGTCGAACTCATC+AGG 0.474622 7_2:-83938299 Msa1083600:intron
GGAACCGCACTCGCCGCATC+CGG 0.475158 7_2:+83941145 None:intergenic
ATTTGCTCTGCAGTAGCGGT+TGG 0.475754 7_2:+83940741 None:intergenic
TTACTCCTTCACGTTGAGCT+GGG 0.475952 7_2:+83941236 None:intergenic
TGCTCTGCAGTAGCGGTTGG+AGG 0.479465 7_2:+83940744 None:intergenic
AATAGCAGATTGCATAAAAG+AGG 0.480696 7_2:+83936538 None:intergenic
AAAGAGCCTAGTGTTGCAAT+TGG 0.490916 7_2:-83936931 Msa1083600:CDS
ATTGACTGCAGATGGTATCA+AGG 0.491296 7_2:-83938458 Msa1083600:CDS
GATGAATACATTTACAGAGC+TGG 0.491345 7_2:-83936877 Msa1083600:CDS
ATGAGATTGACTGGAGATCA+AGG 0.491460 7_2:-83940452 Msa1083600:CDS
TTTCCAAATGGATTAAGTCC+AGG 0.503496 7_2:+83937024 None:intergenic
TAGTGCTTAATGATTCCAAT+TGG 0.508620 7_2:+83939265 None:intergenic
TCATCTTGAACAACAATAGC+TGG 0.509716 7_2:+83938385 None:intergenic
TGGAATGCAGAAAGATTCCC+TGG 0.510667 7_2:-83938408 Msa1083600:CDS
GCGTGCGACATTTGCCACTT+CGG 0.510997 7_2:-83936664 Msa1083600:three_prime_UTR
TATTTGTCAACTTGAGGTCA+TGG 0.513587 7_2:-83938428 Msa1083600:CDS
TAAGATGGGTTCGGTGGCGG+TGG 0.514367 7_2:-83941209 Msa1083600:exon
ATCATCTCTGCAATTGCAGC+AGG 0.520543 7_2:+83937051 None:intergenic
CACTGCAATGGTAATGTTGA+GGG 0.525656 7_2:-83936619 Msa1083600:three_prime_UTR
AGTAAAAGATAAGATGGGTT+CGG 0.528067 7_2:-83941218 Msa1083600:exon
TCAAGCTTGTCAAATTTCAT+GGG 0.528140 7_2:-83936905 Msa1083600:CDS
CTTGGCGGAGATTTGTGTGT+AGG 0.530094 7_2:+83941001 None:intergenic
TGAACTTATCTATTGTGTTG+CGG 0.531789 7_2:-83936701 Msa1083600:three_prime_UTR
TTAATGATTCCAATTGGTAA+AGG 0.533290 7_2:+83939271 None:intergenic
GGAAGCAATCGATCATACTT+CGG 0.533740 7_2:+83941028 None:intergenic
CAATAGATAAGTTCAATTGA+AGG 0.536839 7_2:+83936709 None:intergenic
ATTGCAGAGATGATTAATCC+TGG 0.537124 7_2:-83937042 Msa1083600:CDS
TCTGCAGTAGCGGTTGGAGG+AGG 0.537831 7_2:+83940747 None:intergenic
GTAAATTTATTGACTGCAGA+TGG 0.538147 7_2:-83938466 Msa1083600:CDS
TGGTGGAGGTGTTAAAATGC+TGG 0.538363 7_2:-83936847 Msa1083600:exon
GAGCTGGTTTGCCTTGGTGG+AGG 0.539193 7_2:-83936861 Msa1083600:CDS
GAATATTGTGTTGAAGATTG+TGG 0.542188 7_2:-83938364 Msa1083600:CDS
TCTAATTTGCTCTGCAGTAG+CGG 0.543133 7_2:+83940737 None:intergenic
AGATAAGATGGGTTCGGTGG+CGG 0.545265 7_2:-83941212 Msa1083600:exon
GAATTTGGCACTTACAAATG+AGG 0.550102 7_2:+83940911 None:intergenic
AATTTACCTAGGATAACGCT+TGG 0.552883 7_2:+83940566 None:intergenic
CGAGGCTACGACAGCTGCCG+CGG 0.558845 7_2:+83941173 None:intergenic
CTGGAATTGTTCTTGAGTTG+AGG 0.559302 7_2:-83936828 Msa1083600:three_prime_UTR
CGTTCCGGATGCGGCGAGTG+CGG 0.562174 7_2:-83941149 Msa1083600:CDS
CACTTAGTTGTTTCACGAGG+AGG 0.563811 7_2:-83940971 Msa1083600:CDS
ACTAAGTGTTCAATTCTTGG+CGG 0.566453 7_2:+83940986 None:intergenic
TGAAGGCCAATTGCAACACT+AGG 0.568515 7_2:+83936925 None:intergenic
AACCAAATTCATGCTTGTTG+AGG 0.571349 7_2:+83941104 None:intergenic
ATGGCATATTTGTCAACTTG+AGG 0.572439 7_2:-83938434 Msa1083600:CDS
TCAACAAGCATGAATTTGGT+TGG 0.576730 7_2:-83941102 Msa1083600:CDS
TTGACTGCAGATGGTATCAA+GGG 0.577829 7_2:-83938457 Msa1083600:CDS
GATGAGTTCGACCAGTAAGA+AGG 0.590412 7_2:+83938302 None:intergenic
TTACATACAGAAGTACCAGC+AGG 0.592818 7_2:+83940390 None:intergenic
GAAGGAGTAAAAGATAAGAT+GGG 0.595662 7_2:-83941223 Msa1083600:exon
ACACTGCAATGGTAATGTTG+AGG 0.596965 7_2:-83936620 Msa1083600:three_prime_UTR
GTGAATCAGTTTGTTGAACC+AGG 0.597573 7_2:-83940615 Msa1083600:CDS
GCTCCTCGACTTATTTCTGA+AGG 0.598052 7_2:-83939223 Msa1083600:intron
CTGCAGATGGTATCAAGGGA+TGG 0.598332 7_2:-83938453 Msa1083600:CDS
GGATATGCCAGATGTGCTGT+TGG 0.602891 7_2:-83936807 Msa1083600:three_prime_UTR
CTGCAGTCAATAAATTTACA+GGG 0.604165 7_2:+83938470 None:intergenic
TGCACCCCAAGCGTTATCCT+AGG 0.608599 7_2:-83940572 Msa1083600:intron
CTATATGCGTCCTACTAACA+CGG 0.608861 7_2:-83939245 Msa1083600:CDS
TTTAACACTATGGACTCCCC+AGG 0.613220 7_2:-83936578 Msa1083600:three_prime_UTR
GAAGCTTTGACACAAACTGA+AGG 0.614896 7_2:+83936457 None:intergenic
TCACAAGCATGACGCCGAAG+TGG 0.619797 7_2:+83936650 None:intergenic
GTGATCAAGGAACACTGCAA+TGG 0.620949 7_2:-83936631 Msa1083600:three_prime_UTR
ACATGCTAGAAGAACAAATG+AGG 0.624695 7_2:+83936361 None:intergenic
TGAACAACAATAGCTGGCCA+GGG 0.627097 7_2:+83938391 None:intergenic
CAAAACCCAGCTCAACGTGA+AGG 0.628480 7_2:-83941241 Msa1083600:five_prime_UTR
GTGGCGCCAATCTTGTTCCG+CGG 0.631844 7_2:-83941190 Msa1083600:CDS
AAAATGAAGAGTGTGTACCT+GGG 0.632836 7_2:+83936561 None:intergenic
TTTACCTAGGATAACGCTTG+GGG 0.635968 7_2:+83940568 None:intergenic
ACAAATGAGGTGCAACAATG+AGG 0.638510 7_2:+83936374 None:intergenic
GAGATCAAGGATCATAGCTG+TGG 0.639469 7_2:-83940439 Msa1083600:CDS
ATCAAGGATCATAGCTGTGG+AGG 0.645787 7_2:-83940436 Msa1083600:CDS
AAAAGATAAGATGGGTTCGG+TGG 0.652380 7_2:-83941215 Msa1083600:exon
AAATGAAGAGTGTGTACCTG+GGG 0.659481 7_2:+83936562 None:intergenic
ACTGATTCACATCAGTTACA+CGG 0.683807 7_2:+83940628 None:intergenic
GGAGATTTGTGTGTAGGACA+TGG 0.688633 7_2:+83941007 None:intergenic
ATAAATTGGATTGCACAACA+CGG 0.689490 7_2:-83936955 Msa1083600:CDS
TTACCTTCAGAAATAAGTCG+AGG 0.695194 7_2:+83939220 None:intergenic
ATTGTGTTGAAGATTGTGGG+TGG 0.705277 7_2:-83938360 Msa1083600:CDS
GAACACTTAGTTGTTTCACG+AGG 0.728290 7_2:-83940974 Msa1083600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTAAATAAAATTTGAAT+AGG - chr7_2:83938899-83938918 Msa1083600:intron 10.0%
!!! AATGTATTCTTTTCTATATT+TGG - chr7_2:83937606-83937625 Msa1083600:intron 15.0%
!!! CACTTAATTATTTTTTTTTC+AGG - chr7_2:83938202-83938221 Msa1083600:intron 15.0%
!!! TCAAATATTATAAGTTGATT+AGG + chr7_2:83938882-83938901 None:intergenic 15.0%
!!! TTTAAAGTTTAACTTTACAA+TGG + chr7_2:83938982-83939001 None:intergenic 15.0%
!!! TGGTATTTTTAATGAAAAAT+AGG - chr7_2:83939655-83939674 Msa1083600:intron 15.0%
!! ATAATCAGATAAAAGAAATA+AGG + chr7_2:83940369-83940388 None:intergenic 15.0%
!!! GGCATTCTTAATATATTTTT+AGG - chr7_2:83937058-83937077 Msa1083600:CDS 20.0%
!!! ATTCTTTTCTATATTTGGTT+AGG - chr7_2:83937611-83937630 Msa1083600:intron 20.0%
!!! TATTTCATTTTAAGGTTCTT+GGG + chr7_2:83938374-83938393 None:intergenic 20.0%
!!! TACTTCACTATTTCATTTTA+AGG + chr7_2:83938382-83938401 None:intergenic 20.0%
!! TACAACTAACTTAACTATAA+TGG + chr7_2:83938594-83938613 None:intergenic 20.0%
!!! TTTAGTTTTATACTACATGA+AGG - chr7_2:83938786-83938805 Msa1083600:intron 20.0%
!! TTTAACCATATGATTTAGTT+AGG - chr7_2:83938829-83938848 Msa1083600:intron 20.0%
!! AAATTCAAACAGTACATAAA+AGG + chr7_2:83939276-83939295 None:intergenic 20.0%
!!! TGATTGATAATTCTTATCTT+CGG - chr7_2:83939367-83939386 Msa1083600:intron 20.0%
!!! AAATATAGCTCAATTTTAGA+TGG + chr7_2:83939557-83939576 None:intergenic 20.0%
!!! CATAATGTTTTGAAATTTGT+GGG + chr7_2:83939790-83939809 None:intergenic 20.0%
!!! TAAAAGGGTATTAGAAAAAA+GGG + chr7_2:83940029-83940048 None:intergenic 20.0%
!! AGCATTTACATGATATATAT+AGG - chr7_2:83940189-83940208 Msa1083600:intron 20.0%
!! ATATATAGGAGATACTATAT+AGG - chr7_2:83940203-83940222 Msa1083600:intron 20.0%
!! CTTATCATATCATGTAAATA+GGG + chr7_2:83940270-83940289 None:intergenic 20.0%
!! TATATTTACAACAGTTTCAA+AGG - chr7_2:83940315-83940334 Msa1083600:intron 20.0%
!! TTTAAGTCACTATATCAATA+GGG + chr7_2:83940398-83940417 None:intergenic 20.0%
!! ATTTAAGTCACTATATCAAT+AGG + chr7_2:83940399-83940418 None:intergenic 20.0%
!!! TCTTTATTGTATTTTCCAAA+TGG + chr7_2:83940528-83940547 None:intergenic 20.0%
!! CATTCATATATGAATTCTTT+GGG + chr7_2:83941235-83941254 None:intergenic 20.0%
!! ACATTCATATATGAATTCTT+TGG + chr7_2:83941236-83941255 None:intergenic 20.0%
! TTACAGATGTATTGTAAAAC+AGG + chr7_2:83936593-83936612 None:intergenic 25.0%
! ACAATACATCTGTAAAGATT+TGG - chr7_2:83936598-83936617 Msa1083600:three_prime_UTR 25.0%
!! TAAAATTCTAGCTAGGAATT+TGG + chr7_2:83936644-83936663 None:intergenic 25.0%
! TGATAAAAATTGATTACGAG+TGG + chr7_2:83936672-83936691 None:intergenic 25.0%
!! CTTTATAGTTTTTCCTTTGA+GGG + chr7_2:83936872-83936891 None:intergenic 25.0%
! ACTAACATTCTAATTTACCT+AGG + chr7_2:83936985-83937004 None:intergenic 25.0%
! AGGTAAATTAGAATGTTAGT+TGG - chr7_2:83936985-83937004 Msa1083600:CDS 25.0%
! TTAGAATGTTAGTTGGAAAT+TGG - chr7_2:83936992-83937011 Msa1083600:CDS 25.0%
!! TTTTTCTGAGTTCATATAGT+GGG + chr7_2:83937178-83937197 None:intergenic 25.0%
! AAAGTTATTTATCCCTGTAT+AGG - chr7_2:83937195-83937214 Msa1083600:intron 25.0%
! TTCTATAAGAATCCTATACA+GGG + chr7_2:83937210-83937229 None:intergenic 25.0%
! ATTCTATAAGAATCCTATAC+AGG + chr7_2:83937211-83937230 None:intergenic 25.0%
! AAAACCATTATTGCTTGATA+AGG + chr7_2:83937346-83937365 None:intergenic 25.0%
! ATAGAAAAGAATACATTGCA+CGG + chr7_2:83937603-83937622 None:intergenic 25.0%
!! TTTTCTATATTTGGTTAGGT+AGG - chr7_2:83937615-83937634 Msa1083600:intron 25.0%
! TTTCTATATTTGGTTAGGTA+GGG - chr7_2:83937616-83937635 Msa1083600:intron 25.0%
! TAACAGTATAAGCTATGAAA+TGG + chr7_2:83937889-83937908 None:intergenic 25.0%
! TTAATGATTCCAATTGGTAA+AGG + chr7_2:83938269-83938288 None:intergenic 25.0%
!!! CTATTTCATTTTAAGGTTCT+TGG + chr7_2:83938375-83938394 None:intergenic 25.0%
! ATGTATTATAAGCAACTTCT+AGG - chr7_2:83938426-83938445 Msa1083600:CDS 25.0%
! TGTATTATAAGCAACTTCTA+GGG - chr7_2:83938427-83938446 Msa1083600:CDS 25.0%
! TCAAGAAGTGGAATATTTAA+AGG + chr7_2:83938700-83938719 None:intergenic 25.0%
!!! CTTTTATTCTTTTCAAGAAG+TGG + chr7_2:83938712-83938731 None:intergenic 25.0%
! CACTTCTTGAAAAGAATAAA+AGG - chr7_2:83938710-83938729 Msa1083600:intron 25.0%
! AATATTGTGTTGAAGATTGT+GGG - chr7_2:83939174-83939193 Msa1083600:intron 25.0%
!! GATTGATAATTCTTATCTTC+GGG - chr7_2:83939368-83939387 Msa1083600:intron 25.0%
!!! AATAGAGTTTGTTAGTACAA+CGG + chr7_2:83939519-83939538 None:intergenic 25.0%
!! CATGAAATTAAAACCCATTT+TGG - chr7_2:83939711-83939730 Msa1083600:intron 25.0%
! ATTTGTGGGATAAATATTCT+CGG + chr7_2:83939776-83939795 None:intergenic 25.0%
!!! GCATAATGTTTTGAAATTTG+TGG + chr7_2:83939791-83939810 None:intergenic 25.0%
!!! GTAAAAGGGTATTAGAAAAA+AGG + chr7_2:83940030-83940049 None:intergenic 25.0%
! GCTTATCATATCATGTAAAT+AGG + chr7_2:83940271-83940290 None:intergenic 25.0%
! TACATAGTATCACCAATTAT+TGG + chr7_2:83940462-83940481 None:intergenic 25.0%
! CAATAGATAAGTTCAATTGA+AGG + chr7_2:83940831-83940850 None:intergenic 25.0%
! ATTGTATCTATACTTGATCT+TGG - chr7_2:83941035-83941054 Msa1083600:CDS 25.0%
! GTTTAGTTACATGAAAAATC+TGG + chr7_2:83941213-83941232 None:intergenic 25.0%
TGAAGGAGTAAAAGATAAGA+TGG - chr7_2:83936313-83936332 Msa1083600:three_prime_UTR 30.0%
GAAGGAGTAAAAGATAAGAT+GGG - chr7_2:83936314-83936333 Msa1083600:three_prime_UTR 30.0%
! AGTAAAAGATAAGATGGGTT+CGG - chr7_2:83936319-83936338 Msa1083600:three_prime_UTR 30.0%
! AGGTGTTTGTTAAGTGATAT+GGG + chr7_2:83936416-83936435 None:intergenic 30.0%
ACAACTAAGTGTTCAATTCT+TGG + chr7_2:83936557-83936576 None:intergenic 30.0%
! GGAAGAATAAAATTCTAGCT+AGG + chr7_2:83936651-83936670 None:intergenic 30.0%
! CCTTTATAGTTTTTCCTTTG+AGG + chr7_2:83936873-83936892 None:intergenic 30.0%
CCTCAAAGGAAAAACTATAA+AGG - chr7_2:83936870-83936889 Msa1083600:CDS 30.0%
! AGCCATGATATGATAATGTT+TGG - chr7_2:83937037-83937056 Msa1083600:CDS 30.0%
TGCCAAACATTATCATATCA+TGG + chr7_2:83937042-83937061 None:intergenic 30.0%
! TTTTCTGAGTTCATATAGTG+GGG + chr7_2:83937177-83937196 None:intergenic 30.0%
! CTTTTTCTGAGTTCATATAG+TGG + chr7_2:83937179-83937198 None:intergenic 30.0%
ATCAATGTAGAAATTGCCAT+TGG + chr7_2:83937305-83937324 None:intergenic 30.0%
ATGGCAATTTCTACATTGAT+AGG - chr7_2:83937305-83937324 Msa1083600:intron 30.0%
TCTCAAGAATGATTGTTTGT+AGG - chr7_2:83937396-83937415 Msa1083600:intron 30.0%
ATACATTGCACGGAAAATTT+AGG + chr7_2:83937593-83937612 None:intergenic 30.0%
TTCTATATTTGGTTAGGTAG+GGG - chr7_2:83937617-83937636 Msa1083600:intron 30.0%
! TTTGATGGGTAGTTATCAAA+GGG + chr7_2:83937707-83937726 None:intergenic 30.0%
! ATTTGATGGGTAGTTATCAA+AGG + chr7_2:83937708-83937727 None:intergenic 30.0%
ATTTATGTGTAGCGTAGTAT+TGG - chr7_2:83937807-83937826 Msa1083600:intron 30.0%
TAGTGCTTAATGATTCCAAT+TGG + chr7_2:83938275-83938294 None:intergenic 30.0%
ATTGTCAGAATTCTGAGTAA+GGG + chr7_2:83938558-83938577 None:intergenic 30.0%
TTACTCAGAATTCTGACAAT+CGG - chr7_2:83938558-83938577 Msa1083600:intron 30.0%
ATATTTAAAGGAGAGAGGAT+AGG + chr7_2:83938688-83938707 None:intergenic 30.0%
TTGTTATAGTACAACAGGTT+TGG + chr7_2:83938931-83938950 None:intergenic 30.0%
TCATGTTGTTATAGTACAAC+AGG + chr7_2:83938936-83938955 None:intergenic 30.0%
ATAACAACATGATGTGTCAA+TGG - chr7_2:83938944-83938963 Msa1083600:intron 30.0%
TAACAACATGATGTGTCAAT+GGG - chr7_2:83938945-83938964 Msa1083600:intron 30.0%
CACAATATAAGACACTTATC+AGG + chr7_2:83939040-83939059 None:intergenic 30.0%
CTGATAAGTGTCTTATATTG+TGG - chr7_2:83939038-83939057 Msa1083600:intron 30.0%
CTGCAGTCAATAAATTTACA+GGG + chr7_2:83939070-83939089 None:intergenic 30.0%
TCTGCAGTCAATAAATTTAC+AGG + chr7_2:83939071-83939090 None:intergenic 30.0%
! GTAAATTTATTGACTGCAGA+TGG - chr7_2:83939071-83939090 Msa1083600:intron 30.0%
GAATATTGTGTTGAAGATTG+TGG - chr7_2:83939173-83939192 Msa1083600:intron 30.0%
TGTAAAATCAACCTTCTTAC+TGG - chr7_2:83939224-83939243 Msa1083600:CDS 30.0%
ACTAACAAACTCTATTGTTC+TGG - chr7_2:83939523-83939542 Msa1083600:intron 30.0%
ATAAACTTCCAGAAAACGAA+TGG + chr7_2:83939627-83939646 None:intergenic 30.0%
CTGGAAGTTTATATCTTCTA+TGG - chr7_2:83939635-83939654 Msa1083600:intron 30.0%
AAGAAACGGCTGTAATAAAT+TGG - chr7_2:83940568-83940587 Msa1083600:intron 30.0%
ATAAATTGGATTGCACAACA+CGG - chr7_2:83940582-83940601 Msa1083600:CDS 30.0%
ATGAAATTTGACAAGCTTGA+AGG + chr7_2:83940632-83940651 None:intergenic 30.0%
TTCAAGCTTGTCAAATTTCA+TGG - chr7_2:83940631-83940650 Msa1083600:CDS 30.0%
TCAAGCTTGTCAAATTTCAT+GGG - chr7_2:83940632-83940651 Msa1083600:CDS 30.0%
TGAACTTATCTATTGTGTTG+CGG - chr7_2:83940836-83940855 Msa1083600:intron 30.0%
! CAGTAATCCTTTTAACACTA+TGG - chr7_2:83940949-83940968 Msa1083600:CDS 30.0%
AATAGCAGATTGCATAAAAG+AGG + chr7_2:83941002-83941021 None:intergenic 30.0%
TAGTTACATGAAAAATCTGG+TGG + chr7_2:83941210-83941229 None:intergenic 30.0%
! GAGGTGTTTGTTAAGTGATA+TGG + chr7_2:83936417-83936436 None:intergenic 35.0%
! AACCAAATTCATGCTTGTTG+AGG + chr7_2:83936436-83936455 None:intergenic 35.0%
TCAACAAGCATGAATTTGGT+TGG - chr7_2:83936435-83936454 Msa1083600:three_prime_UTR 35.0%
!! ATGAATTTGGTTGGTGTTGT+CGG - chr7_2:83936444-83936463 Msa1083600:three_prime_UTR 35.0%
ACTAAGTGTTCAATTCTTGG+CGG + chr7_2:83936554-83936573 None:intergenic 35.0%
GAATTTGGCACTTACAAATG+AGG + chr7_2:83936629-83936648 None:intergenic 35.0%
ATAAGACTTAGTGTGTGTGT+TGG + chr7_2:83936703-83936722 None:intergenic 35.0%
!! CACTAAGTCTTATTTCGTGA+AGG - chr7_2:83936710-83936729 Msa1083600:three_prime_UTR 35.0%
GTTGCAGATCTGATTCAATT+TGG - chr7_2:83936736-83936755 Msa1083600:three_prime_UTR 35.0%
!! GTATTTTGCTCTTGTTTCTC+CGG - chr7_2:83936765-83936784 Msa1083600:three_prime_UTR 35.0%
! ACTGATTCACATCAGTTACA+CGG + chr7_2:83936912-83936931 None:intergenic 35.0%
ATTTACCTAGGATAACGCTT+GGG + chr7_2:83936973-83936992 None:intergenic 35.0%
AATTTACCTAGGATAACGCT+TGG + chr7_2:83936974-83936993 None:intergenic 35.0%
!!! GTAGTTTTAGATAAACCTGC+TGG - chr7_2:83937132-83937151 Msa1083600:intron 35.0%
CCATTGGATACAAAAACTAC+AGG + chr7_2:83937289-83937308 None:intergenic 35.0%
! CCTGTAGTTTTTGTATCCAA+TGG - chr7_2:83937286-83937305 Msa1083600:intron 35.0%
ATTTCTACATTGATAGGCGT+TGG - chr7_2:83937311-83937330 Msa1083600:intron 35.0%
TTTCTACATTGATAGGCGTT+GGG - chr7_2:83937312-83937331 Msa1083600:intron 35.0%
AGGTCCTTATCAAGCAATAA+TGG - chr7_2:83937339-83937358 Msa1083600:intron 35.0%
ACAACTTTCTTCAATGTTGC+CGG + chr7_2:83937649-83937668 None:intergenic 35.0%
! TTGATGGGTAGTTATCAAAG+GGG + chr7_2:83937706-83937725 None:intergenic 35.0%
CGTGCAGTTATCAATTTGAT+GGG + chr7_2:83937721-83937740 None:intergenic 35.0%
! CCATCAAATTGATAACTGCA+CGG - chr7_2:83937719-83937738 Msa1083600:intron 35.0%
! CCGAATTTTGCAATGAAAGA+CGG + chr7_2:83937854-83937873 None:intergenic 35.0%
CCGTCTTTCATTGCAAAATT+CGG - chr7_2:83937851-83937870 Msa1083600:intron 35.0%
CGTCTTTCATTGCAAAATTC+GGG - chr7_2:83937852-83937871 Msa1083600:intron 35.0%
TATAAAATCACACTCGCACA+AGG - chr7_2:83938062-83938081 Msa1083600:intron 35.0%
GTTTGATCTTAGTCGTTAGA+CGG - chr7_2:83938093-83938112 Msa1083600:intron 35.0%
TTACCTTCAGAAATAAGTCG+AGG + chr7_2:83938320-83938339 None:intergenic 35.0%
! ATTATAAGCAACTTCTAGGG+AGG - chr7_2:83938430-83938449 Msa1083600:CDS 35.0%
GATTGTCAGAATTCTGAGTA+AGG + chr7_2:83938559-83938578 None:intergenic 35.0%
GTGGAATATTTAAAGGAGAG+AGG + chr7_2:83938693-83938712 None:intergenic 35.0%
ATGCGCCTAACTAAATCATA+TGG + chr7_2:83938837-83938856 None:intergenic 35.0%
TAGGTAGCTAATTTCCATCT+TGG + chr7_2:83938863-83938882 None:intergenic 35.0%
ATGGCATATTTGTCAACTTG+AGG - chr7_2:83939103-83939122 Msa1083600:intron 35.0%
TATTTGTCAACTTGAGGTCA+TGG - chr7_2:83939109-83939128 Msa1083600:intron 35.0%
TCATCTTGAACAACAATAGC+TGG + chr7_2:83939155-83939174 None:intergenic 35.0%
GACATTACACACACCAAAAT+GGG + chr7_2:83939727-83939746 None:intergenic 35.0%
AGACATTACACACACCAAAA+TGG + chr7_2:83939728-83939747 None:intergenic 35.0%
TGGTGTGTGTAATGTCTATT+CGG - chr7_2:83939731-83939750 Msa1083600:intron 35.0%
CAAAACATTATGCACTCTAG+TGG - chr7_2:83939798-83939817 Msa1083600:intron 35.0%
TCTATACCCCTCAACAAAAT+GGG - chr7_2:83939844-83939863 Msa1083600:intron 35.0%
!! GAGATGTTGATTTGTGTGTT+TGG + chr7_2:83939874-83939893 None:intergenic 35.0%
TAATGTTCCATCTCGTTCTT+GGG - chr7_2:83939926-83939945 Msa1083600:intron 35.0%
TTATAAGATAGCACGCTCTT+AGG + chr7_2:83939961-83939980 None:intergenic 35.0%
AAGCCTATCCAAAATCAATC+CGG + chr7_2:83940104-83940123 None:intergenic 35.0%
GGAGATACTATATAGGCTAA+AGG - chr7_2:83940210-83940229 Msa1083600:intron 35.0%
ATTGCAGAGATGATTAATCC+TGG - chr7_2:83940495-83940514 Msa1083600:intron 35.0%
AATCCTGGACTTAATCCATT+TGG - chr7_2:83940510-83940529 Msa1083600:intron 35.0%
!! TTTCCAAATGGATTAAGTCC+AGG + chr7_2:83940516-83940535 None:intergenic 35.0%
CAGTGAGAGTGAAAAAGAAA+CGG - chr7_2:83940554-83940573 Msa1083600:intron 35.0%
GATGAATACATTTACAGAGC+TGG - chr7_2:83940660-83940679 Msa1083600:CDS 35.0%
! AAAATGAAGAGTGTGTACCT+GGG + chr7_2:83940979-83940998 None:intergenic 35.0%
ACTTGATCTTGGTCTATTAG+AGG - chr7_2:83941046-83941065 Msa1083600:CDS 35.0%
CAACAATGAGGTGAGAATTA+TGG + chr7_2:83941154-83941173 None:intergenic 35.0%
ACATGCTAGAAGAACAAATG+AGG + chr7_2:83941179-83941198 None:intergenic 35.0%
! AAAAGATAAGATGGGTTCGG+TGG - chr7_2:83936322-83936341 Msa1083600:three_prime_UTR 40.0%
CACCTCAACAAGCATGAATT+TGG - chr7_2:83936431-83936450 Msa1083600:three_prime_UTR 40.0%
GAAGCAATCGATCATACTTC+GGG + chr7_2:83936511-83936530 None:intergenic 40.0%
GGAAGCAATCGATCATACTT+CGG + chr7_2:83936512-83936531 None:intergenic 40.0%
! GAACACTTAGTTGTTTCACG+AGG - chr7_2:83936563-83936582 Msa1083600:three_prime_UTR 40.0%
!!! TAGTGTGTGTGTTGGTTTTG+CGG + chr7_2:83936695-83936714 None:intergenic 40.0%
!! TCTAATTTGCTCTGCAGTAG+CGG + chr7_2:83936803-83936822 None:intergenic 40.0%
CAAAGAAGCAACTGAACCAT+TGG - chr7_2:83936828-83936847 Msa1083600:three_prime_UTR 40.0%
!!! GCTCTTTTTTGCAGAACCAA+TGG + chr7_2:83936847-83936866 None:intergenic 40.0%
!! GTGAATCAGTTTGTTGAACC+AGG - chr7_2:83936922-83936941 Msa1083600:CDS 40.0%
TTTACCTAGGATAACGCTTG+GGG + chr7_2:83936972-83936991 None:intergenic 40.0%
! TTAGGTGCTATGAGATTGAC+TGG - chr7_2:83937076-83937095 Msa1083600:CDS 40.0%
ATGAGATTGACTGGAGATCA+AGG - chr7_2:83937085-83937104 Msa1083600:CDS 40.0%
!! TTACATACAGAAGTACCAGC+AGG + chr7_2:83937150-83937169 None:intergenic 40.0%
! TTCTACATTGATAGGCGTTG+GGG - chr7_2:83937313-83937332 Msa1083600:intron 40.0%
TTGTAGGTTTGATGCTCAGT+AGG - chr7_2:83937412-83937431 Msa1083600:intron 40.0%
CCGTGCAGTTATCAATTTGA+TGG + chr7_2:83937722-83937741 None:intergenic 40.0%
! CAAATTGATAACTGCACGGA+AGG - chr7_2:83937723-83937742 Msa1083600:intron 40.0%
! ATTCTCTCCGGTGTCAATTT+GGG - chr7_2:83938007-83938026 Msa1083600:intron 40.0%
AAGAACACCCAAATTGACAC+CGG + chr7_2:83938017-83938036 None:intergenic 40.0%
CTATATGCGTCCTACTAACA+CGG - chr7_2:83938292-83938311 Msa1083600:intron 40.0%
CTGAAGGTAACTACGCAAAT+TGG - chr7_2:83938330-83938349 Msa1083600:CDS 40.0%
TCCATGGTTCATGGTATTAG+TGG - chr7_2:83938459-83938478 Msa1083600:CDS 40.0%
CAGAATTCTGAGTAAGGGAA+AGG + chr7_2:83938553-83938572 None:intergenic 40.0%
ATTGACTGCAGATGGTATCA+AGG - chr7_2:83939079-83939098 Msa1083600:intron 40.0%
TTGACTGCAGATGGTATCAA+GGG - chr7_2:83939080-83939099 Msa1083600:intron 40.0%
ATTGTGTTGAAGATTGTGGG+TGG - chr7_2:83939177-83939196 Msa1083600:intron 40.0%
AAACAGGTTACAGCTCATGA+AGG + chr7_2:83939449-83939468 None:intergenic 40.0%
ACTGATTGCTTCACTAGCAA+AGG + chr7_2:83939480-83939499 None:intergenic 40.0%
ACTTCCAGAAAACGAATGGA+GGG + chr7_2:83939623-83939642 None:intergenic 40.0%
AACTTCCAGAAAACGAATGG+AGG + chr7_2:83939624-83939643 None:intergenic 40.0%
GTCTATACCCCTCAACAAAA+TGG - chr7_2:83939843-83939862 Msa1083600:intron 40.0%
CTATACCCCTCAACAAAATG+GGG - chr7_2:83939845-83939864 Msa1083600:intron 40.0%
ATGAAGGAGAAGAGTCTATG+TGG + chr7_2:83939904-83939923 None:intergenic 40.0%
ACATAGACTCTTCTCCTTCA+TGG - chr7_2:83939903-83939922 Msa1083600:intron 40.0%
GAGATGGAACATTACCATGA+AGG + chr7_2:83939920-83939939 None:intergenic 40.0%
GTAATGTTCCATCTCGTTCT+TGG - chr7_2:83939925-83939944 Msa1083600:intron 40.0%
! TTGTTTTCGCTCTTTCAACG+CGG + chr7_2:83940132-83940151 None:intergenic 40.0%
AAAGAGCCTAGTGTTGCAAT+TGG - chr7_2:83940606-83940625 Msa1083600:CDS 40.0%
! CTGGAATTGTTCTTGAGTTG+AGG - chr7_2:83940709-83940728 Msa1083600:CDS 40.0%
ATTTAGTCCAACAGCACATC+TGG + chr7_2:83940740-83940759 None:intergenic 40.0%
! ACACTGCAATGGTAATGTTG+AGG - chr7_2:83940917-83940936 Msa1083600:intron 40.0%
! CACTGCAATGGTAATGTTGA+GGG - chr7_2:83940918-83940937 Msa1083600:intron 40.0%
! AAATGAAGAGTGTGTACCTG+GGG + chr7_2:83940978-83940997 None:intergenic 40.0%
! GAAAATGAAGAGTGTGTACC+TGG + chr7_2:83940980-83940999 None:intergenic 40.0%
! GAAGCTTTGACACAAACTGA+AGG + chr7_2:83941083-83941102 None:intergenic 40.0%
GCTTCGAGAAATCTGACAAA+TGG - chr7_2:83941098-83941117 Msa1083600:CDS 40.0%
ACAAATGAGGTGCAACAATG+AGG + chr7_2:83941166-83941185 None:intergenic 40.0%
TTACTCCTTCACGTTGAGCT+GGG + chr7_2:83936304-83936323 None:intergenic 45.0%
TTTACTCCTTCACGTTGAGC+TGG + chr7_2:83936305-83936324 None:intergenic 45.0%
GTAGCTTACTGTTTCGCTGA+TGG + chr7_2:83936489-83936508 None:intergenic 45.0%
GGAGATTTGTGTGTAGGACA+TGG + chr7_2:83936533-83936552 None:intergenic 45.0%
! CACTTAGTTGTTTCACGAGG+AGG - chr7_2:83936566-83936585 Msa1083600:three_prime_UTR 45.0%
!! CAAAAAAGAGCGTCCCTCAA+AGG - chr7_2:83936856-83936875 Msa1083600:CDS 45.0%
GAGATCAAGGATCATAGCTG+TGG - chr7_2:83937098-83937117 Msa1083600:CDS 45.0%
ATCAAGGATCATAGCTGTGG+AGG - chr7_2:83937101-83937120 Msa1083600:CDS 45.0%
CTACAGGACTTAGCAATGCT+AGG + chr7_2:83937273-83937292 None:intergenic 45.0%
TAGGTTTGATGCTCAGTAGG+TGG - chr7_2:83937415-83937434 Msa1083600:intron 45.0%
!! TGTGTAGCGTAGTATTGGCT+AGG - chr7_2:83937812-83937831 Msa1083600:intron 45.0%
! GATTCTCTCCGGTGTCAATT+TGG - chr7_2:83938006-83938025 Msa1083600:intron 45.0%
GCAGCTTCTCCTTTACCAAT+TGG - chr7_2:83938257-83938276 Msa1083600:intron 45.0%
!! GCTCCTCGACTTATTTCTGA+AGG - chr7_2:83938314-83938333 Msa1083600:CDS 45.0%
GCCACTAATACCATGAACCA+TGG + chr7_2:83938463-83938482 None:intergenic 45.0%
TCTTGCCTTGTACTGAGAGT+TGG - chr7_2:83938509-83938528 Msa1083600:CDS 45.0%
CTTGCCTTGTACTGAGAGTT+GGG - chr7_2:83938510-83938529 Msa1083600:CDS 45.0%
AAAGCCCAACTCTCAGTACA+AGG + chr7_2:83938517-83938536 None:intergenic 45.0%
TTGTACTGAGAGTTGGGCTT+TGG - chr7_2:83938516-83938535 Msa1083600:CDS 45.0%
GTAAGGGAAAGGAGAGGATT+GGG + chr7_2:83938542-83938561 None:intergenic 45.0%
AGTAAGGGAAAGGAGAGGAT+TGG + chr7_2:83938543-83938562 None:intergenic 45.0%
TTCTGAGTAAGGGAAAGGAG+AGG + chr7_2:83938548-83938567 None:intergenic 45.0%
AGAAGACAGAGTGACACGTT+TGG - chr7_2:83938755-83938774 Msa1083600:intron 45.0%
GAAGACAGAGTGACACGTTT+GGG - chr7_2:83938756-83938775 Msa1083600:intron 45.0%
TGCTCTGCAGAGTTGCTAAA+AGG - chr7_2:83939011-83939030 Msa1083600:intron 45.0%
TGGAATGCAGAAAGATTCCC+TGG - chr7_2:83939129-83939148 Msa1083600:intron 45.0%
TGAACAACAATAGCTGGCCA+GGG + chr7_2:83939149-83939168 None:intergenic 45.0%
TTGAACAACAATAGCTGGCC+AGG + chr7_2:83939150-83939169 None:intergenic 45.0%
GATGAGTTCGACCAGTAAGA+AGG + chr7_2:83939238-83939257 None:intergenic 45.0%
TCTTACTGGTCGAACTCATC+AGG - chr7_2:83939238-83939257 Msa1083600:CDS 45.0%
TTCCAGAAAACGAATGGAGG+GGG + chr7_2:83939621-83939640 None:intergenic 45.0%
CTTCCAGAAAACGAATGGAG+GGG + chr7_2:83939622-83939641 None:intergenic 45.0%
GGGTATAGACACAACACGTT+TGG + chr7_2:83939833-83939852 None:intergenic 45.0%
! TGGCTACCCCATTTTGTTGA+GGG + chr7_2:83939854-83939873 None:intergenic 45.0%
! TTGGCTACCCCATTTTGTTG+AGG + chr7_2:83939855-83939874 None:intergenic 45.0%
AACATGACCCAAGAACGAGA+TGG + chr7_2:83939936-83939955 None:intergenic 45.0%
CTCATTCTCTCCTTTGTCCT+TGG - chr7_2:83939983-83940002 Msa1083600:intron 45.0%
ATTCTCTCCTTTGTCCTTGG+CGG - chr7_2:83939986-83940005 Msa1083600:intron 45.0%
TAGAAAAAAGGGCCGAGTGA+TGG + chr7_2:83940018-83940037 None:intergenic 45.0%
! TGAACATCAGAAGCGTGTTC+CGG - chr7_2:83940059-83940078 Msa1083600:intron 45.0%
!! TGGCCGGATTGATTTTGGAT+AGG - chr7_2:83940098-83940117 Msa1083600:intron 45.0%
!! AGCTCAATTTGCTGCTTGCA+AGG - chr7_2:83940434-83940453 Msa1083600:CDS 45.0%
! GCTTGCAAGGCACCAATAAT+TGG - chr7_2:83940447-83940466 Msa1083600:CDS 45.0%
ATCATCTCTGCAATTGCAGC+AGG + chr7_2:83940489-83940508 None:intergenic 45.0%
TGAAGGCCAATTGCAACACT+AGG + chr7_2:83940615-83940634 None:intergenic 45.0%
!! TTTACAGAGCTGGTTTGCCT+TGG - chr7_2:83940670-83940689 Msa1083600:CDS 45.0%
!! GCATTTTAACACCTCCACCA+AGG + chr7_2:83940690-83940709 None:intergenic 45.0%
!! TGGTGGAGGTGTTAAAATGC+TGG - chr7_2:83940690-83940709 Msa1083600:CDS 45.0%
GTGATCAAGGAACACTGCAA+TGG - chr7_2:83940906-83940925 Msa1083600:intron 45.0%
GGGGAGTCCATAGTGTTAAA+AGG + chr7_2:83940959-83940978 None:intergenic 45.0%
TTTAACACTATGGACTCCCC+AGG - chr7_2:83940959-83940978 Msa1083600:CDS 45.0%
CAAAACCCAGCTCAACGTGA+AGG - chr7_2:83936296-83936315 Msa1083600:three_prime_UTR 50.0%
!! AGATAAGATGGGTTCGGTGG+CGG - chr7_2:83936325-83936344 Msa1083600:three_prime_UTR 50.0%
CTTGGCGGAGATTTGTGTGT+AGG + chr7_2:83936539-83936558 None:intergenic 50.0%
ATTTGCTCTGCAGTAGCGGT+TGG + chr7_2:83936799-83936818 None:intergenic 50.0%
!! ATTGATAGGCGTTGGGGTCA+AGG - chr7_2:83937319-83937338 Msa1083600:intron 50.0%
GGTTAGGTAGGGGAAACTAC+CGG - chr7_2:83937627-83937646 Msa1083600:intron 50.0%
AACCTTTGCAACTCGTGCCT+TGG - chr7_2:83937671-83937690 Msa1083600:intron 50.0%
ACCTTTGCAACTCGTGCCTT+GGG - chr7_2:83937672-83937691 Msa1083600:intron 50.0%
CAAAGGGGTTGTCAATCCCA+AGG + chr7_2:83937691-83937710 None:intergenic 50.0%
! TTGATAACTGCACGGAAGGC+TGG - chr7_2:83937727-83937746 Msa1083600:intron 50.0%
CTGTTCTAACCCACCTGAGT+TGG - chr7_2:83937927-83937946 Msa1083600:intron 50.0%
!! GTGGTATTGGCTTGGGTCTT+GGG - chr7_2:83937954-83937973 Msa1083600:intron 50.0%
GAATCGAACCTGAGACCTTG+CGG + chr7_2:83937991-83938010 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+CGG - chr7_2:83937995-83938014 Msa1083600:intron 50.0%
AGGAGCAACTCCATGGTTCA+TGG - chr7_2:83938450-83938469 Msa1083600:CDS 50.0%
GTTAGGCGCATTAGCCAAGA+TGG - chr7_2:83938846-83938865 Msa1083600:intron 50.0%
CTGCAGATGGTATCAAGGGA+TGG - chr7_2:83939084-83939103 Msa1083600:intron 50.0%
AGCAAAGGCAGCTGGTAAAC+AGG + chr7_2:83939465-83939484 None:intergenic 50.0%
TCCAGAAAACGAATGGAGGG+GGG + chr7_2:83939620-83939639 None:intergenic 50.0%
! GGCTACCCCATTTTGTTGAG+GGG + chr7_2:83939853-83939872 None:intergenic 50.0%
GTTCAGGCATGGGCGTAAAA+GGG + chr7_2:83940044-83940063 None:intergenic 50.0%
TGTTCAGGCATGGGCGTAAA+AGG + chr7_2:83940045-83940064 None:intergenic 50.0%
CGCTTCTGATGTTCAGGCAT+GGG + chr7_2:83940054-83940073 None:intergenic 50.0%
ACGCTTCTGATGTTCAGGCA+TGG + chr7_2:83940055-83940074 None:intergenic 50.0%
GGAACACGCTTCTGATGTTC+AGG + chr7_2:83940060-83940079 None:intergenic 50.0%
! GAACATCAGAAGCGTGTTCC+GGG - chr7_2:83940060-83940079 Msa1083600:intron 50.0%
TGTTCCGGGTGGTCCAATAA+CGG - chr7_2:83940074-83940093 Msa1083600:intron 50.0%
GGATATGCCAGATGTGCTGT+TGG - chr7_2:83940730-83940749 Msa1083600:CDS 50.0%
TGCACTCGCAGGTAAGTTCC+TGG + chr7_2:83936943-83936962 None:intergenic 55.0%
TGCACCCCAAGCGTTATCCT+AGG - chr7_2:83936965-83936984 Msa1083600:CDS 55.0%
TCCCAAGGCACGAGTTGCAA+AGG + chr7_2:83937676-83937695 None:intergenic 55.0%
CAATACCACCAGGCCAACTC+AGG + chr7_2:83937943-83937962 None:intergenic 55.0%
! CTGAGTTGGCCTGGTGGTAT+TGG - chr7_2:83937941-83937960 Msa1083600:intron 55.0%
!! TTGGCCTGGTGGTATTGGCT+TGG - chr7_2:83937946-83937965 Msa1083600:intron 55.0%
!! TGGCCTGGTGGTATTGGCTT+GGG - chr7_2:83937947-83937966 Msa1083600:intron 55.0%
AGACCCAAGCCAATACCACC+AGG + chr7_2:83937953-83937972 None:intergenic 55.0%
!! GGTGGTATTGGCTTGGGTCT+TGG - chr7_2:83937953-83937972 Msa1083600:intron 55.0%
AGTCGAGGAGCCGTGTTAGT+AGG + chr7_2:83938305-83938324 None:intergenic 55.0%
TCTAGGGAGGAGCAACTCCA+TGG - chr7_2:83938443-83938462 Msa1083600:CDS 55.0%
GCTTCACTAGCAAAGGCAGC+TGG + chr7_2:83939473-83939492 None:intergenic 55.0%
CCAGAAAACGAATGGAGGGG+GGG + chr7_2:83939619-83939638 None:intergenic 55.0%
!! AAAGGGCCGAGTGATGGACT+TGG + chr7_2:83940012-83940031 None:intergenic 55.0%
GTTCCGGGTGGTCCAATAAC+GGG - chr7_2:83940075-83940094 Msa1083600:intron 55.0%
TCAATCCGGCCACCCGTTAT+TGG + chr7_2:83940090-83940109 None:intergenic 55.0%
!! ACGGGTGGCCGGATTGATTT+TGG - chr7_2:83940093-83940112 Msa1083600:intron 55.0%
!! ACAGAGCTGGTTTGCCTTGG+TGG - chr7_2:83940673-83940692 Msa1083600:CDS 55.0%
! GCGTGCGACATTTGCCACTT+CGG - chr7_2:83940873-83940892 Msa1083600:intron 55.0%
TCACAAGCATGACGCCGAAG+TGG + chr7_2:83940890-83940909 None:intergenic 55.0%
CGGCGTCATGCTTGTGATCA+AGG - chr7_2:83940893-83940912 Msa1083600:intron 55.0%
!! TAAGATGGGTTCGGTGGCGG+TGG - chr7_2:83936328-83936347 Msa1083600:three_prime_UTR 60.0%
GTGGCGCCAATCTTGTTCCG+CGG - chr7_2:83936347-83936366 Msa1083600:three_prime_UTR 60.0%
CAGCTGCCGCGGAACAAGAT+TGG + chr7_2:83936356-83936375 None:intergenic 60.0%
GTAGCGGTTGGAGGAGGTTC+CGG + chr7_2:83936787-83936806 None:intergenic 60.0%
TCTGCAGTAGCGGTTGGAGG+AGG + chr7_2:83936793-83936812 None:intergenic 60.0%
TGCTCTGCAGTAGCGGTTGG+AGG + chr7_2:83936796-83936815 None:intergenic 60.0%
! CTAACCCACCTGAGTTGGCC+TGG - chr7_2:83937932-83937951 Msa1083600:intron 60.0%
ACCACCAGGCCAACTCAGGT+GGG + chr7_2:83937939-83937958 None:intergenic 60.0%
TACCACCAGGCCAACTCAGG+TGG + chr7_2:83937940-83937959 None:intergenic 60.0%
TCGAACCTGAGACCTTGCGG+AGG + chr7_2:83937988-83938007 None:intergenic 60.0%
! CCCCCCCTCCATTCGTTTTC+TGG - chr7_2:83939616-83939635 Msa1083600:intron 60.0%
GACTTGGCCGCCAAGGACAA+AGG + chr7_2:83939996-83940015 None:intergenic 60.0%
!! AGTGATGGACTTGGCCGCCA+AGG + chr7_2:83940003-83940022 None:intergenic 60.0%
TGGCGGCCAAGTCCATCACT+CGG - chr7_2:83940003-83940022 Msa1083600:intron 60.0%
! CATCAGAAGCGTGTTCCGGG+TGG - chr7_2:83940063-83940082 Msa1083600:intron 60.0%
CCACCCGTTATTGGACCACC+CGG + chr7_2:83940081-83940100 None:intergenic 60.0%
!! GTGGTCCAATAACGGGTGGC+CGG - chr7_2:83940082-83940101 Msa1083600:intron 60.0%
!! GAGCTGGTTTGCCTTGGTGG+AGG - chr7_2:83940676-83940695 Msa1083600:CDS 60.0%
CTGTCGTAGCCTCGGCGTTC+CGG - chr7_2:83936373-83936392 Msa1083600:three_prime_UTR 65.0%
TAGCCTCGGCGTTCCGGATG+CGG - chr7_2:83936379-83936398 Msa1083600:three_prime_UTR 65.0%
! ACCCACCTGAGTTGGCCTGG+TGG - chr7_2:83937935-83937954 Msa1083600:intron 65.0%
! TGGGAGTGTGCTCCTCCGCA+AGG - chr7_2:83937973-83937992 Msa1083600:intron 65.0%
GTGCTCCTCCGCAAGGTCTC+AGG - chr7_2:83937980-83937999 Msa1083600:intron 65.0%
! CCGGGTGGTCCAATAACGGG+TGG - chr7_2:83940078-83940097 Msa1083600:intron 65.0%
CGAGGCTACGACAGCTGCCG+CGG + chr7_2:83936367-83936386 None:intergenic 70.0%
CGCGGCAGCTGTCGTAGCCT+CGG - chr7_2:83936365-83936384 Msa1083600:three_prime_UTR 70.0%
CGTTCCGGATGCGGCGAGTG+CGG - chr7_2:83936388-83936407 Msa1083600:three_prime_UTR 70.0%
GGAACCGCACTCGCCGCATC+CGG + chr7_2:83936395-83936414 None:intergenic 70.0%
TGGGGTGCACGTGCACTCGC+AGG + chr7_2:83936954-83936973 None:intergenic 70.0%
TCGCCGCATCCGGAACGCCG+AGG + chr7_2:83936385-83936404 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 83936283 83941276 83936283 ID=Msa1083600;Name=Msa1083600
chr7_2 mRNA 83936283 83941276 83936283 ID=Msa1083600-mRNA-1;Parent=Msa1083600;Name=Msa1083600-mRNA-1;_AED=0.16;_eAED=0.16;_QI=49|0.6|0.83|1|1|1|6|572|421
chr7_2 exon 83936283 83937130 83936283 ID=Msa1083600-mRNA-1:exon:22265;Parent=Msa1083600-mRNA-1
chr7_2 exon 83938300 83938538 83938300 ID=Msa1083600-mRNA-1:exon:22264;Parent=Msa1083600-mRNA-1
chr7_2 exon 83939224 83939335 83939224 ID=Msa1083600-mRNA-1:exon:22263;Parent=Msa1083600-mRNA-1
chr7_2 exon 83940398 83940479 83940398 ID=Msa1083600-mRNA-1:exon:22262;Parent=Msa1083600-mRNA-1
chr7_2 exon 83940573 83940827 83940573 ID=Msa1083600-mRNA-1:exon:22261;Parent=Msa1083600-mRNA-1
chr7_2 exon 83940926 83941276 83940926 ID=Msa1083600-mRNA-1:exon:22260;Parent=Msa1083600-mRNA-1
chr7_2 five_prime_UTR 83941228 83941276 83941228 ID=Msa1083600-mRNA-1:five_prime_utr;Parent=Msa1083600-mRNA-1
chr7_2 CDS 83940926 83941227 83940926 ID=Msa1083600-mRNA-1:cds;Parent=Msa1083600-mRNA-1
chr7_2 CDS 83940573 83940827 83940573 ID=Msa1083600-mRNA-1:cds;Parent=Msa1083600-mRNA-1
chr7_2 CDS 83940398 83940479 83940398 ID=Msa1083600-mRNA-1:cds;Parent=Msa1083600-mRNA-1
chr7_2 CDS 83939224 83939335 83939224 ID=Msa1083600-mRNA-1:cds;Parent=Msa1083600-mRNA-1
chr7_2 CDS 83938300 83938538 83938300 ID=Msa1083600-mRNA-1:cds;Parent=Msa1083600-mRNA-1
chr7_2 CDS 83936855 83937130 83936855 ID=Msa1083600-mRNA-1:cds;Parent=Msa1083600-mRNA-1
chr7_2 three_prime_UTR 83936283 83936854 83936283 ID=Msa1083600-mRNA-1:three_prime_utr;Parent=Msa1083600-mRNA-1
Gene Sequence

>Msa1083600

ATGGGTTCGGTGGCGGTGGCGCCAATCTTGTTCCGCGGCAGCTGTCGTAGCCTCGGCGTTCCGGATGCGGCGAGTGCGGTTCCCATATCACTTAACAAACACCTCAACAAGCATGAATTTGGTTGGTGTTGTCGGAATTCAAATAACAGTGACGCCATCAGCGAAACAGTAAGCTACCCGAAGTATGATCGATTGCTTCCATGTCCTACACACAAATCTCCGCCAAGAATTGAACACTTAGTTGTTTCACGAGGAGGACCTGTTTTACAATACATCTGTAAAGATTTGGATCTTCCTCATTTGTTTGTTGCAGATCTGATTCAATTTGGAGCTGTGTATTTTGCTCTTGTTTCTCCGGAACCTCCTCCAACCGCTACTGCAGAGCAAATTAGAATTTTCAAAGAAGCAACTGAACCATTGGTTCTGCAAAAAAGAGCGTCCCTCAAAGGAAAAACTATAAAGGAAGCTCAAAAAACTTTCCGTGTAACTGATGTGAATCAGTTTGTTGAACCAGGAACTTACCTGCGAGTGCACGTGCACCCCAAGCGTTATCCTAGGTGCTATGAGATTGACTGGAGATCAAGGATCATAGCTGTGGAGGAATCGTATGTAGTTTTAGATAAACCTGCTGGTACTTCTGAGAAAAAAGTGAAGAAGATTTATCTTGCTCTCGCAGCTTCTCCTTTACCAATTGGAATCATTAAGCACTATATGCGTCCTACTAACACGGCTCCTCGACTTATTTCTGAAGAGTTGCTAAAAGGCTTCCTGATAAGTGTCTTATATTGTGGATTCAACCCTGTAAATTTATTGACTGCAGATGGTATCAAGGGATGGCATATTTGTCAACTTGAGGTCATGGAATGCAGAAAGATTCCCTGGCCAGCTATTGTTGTTCAAGATGAATATTGTGTTGAAGATTGTGGGTGGCTCTCTCAAGATTACGCGTACGAGTGTAAAATCAACCTTCTTACTGGTCGAACTCATCAGATTCGAGCTCAATTTGCTGCTTGCAAGGCACCAATAATTGGTGATACTATGTATATGCCTGCTGCAATTGCAGAGATGATTAATCCTGGACTTAATCCATTTGGAAAATACAATAAAGATTTCAGCAGTGAGAGTGAAAAAGAAACGGCTGTAATAAATTGGATTGCACAACACGGAAAAGAGCCTAGTGTTGCAATTGGCCTTCAAGCTTGTCAAATTTCATGGGACGATGATGAATACATTTACAGAGCTGGTTTGCCTTGGTGGAGGTGTTAA
Protein sequence

>Msa1083600

MGSVAVAPILFRGSCRSLGVPDAASAVPISLNKHLNKHEFGWCCRNSNNSDAISETVSYPKYDRLLPCPTHKSPPRIEHLVVSRGGPVLQYICKDLDLPHLFVADLIQFGAVYFALVSPEPPPTATAEQIRIFKEATEPLVLQKRASLKGKTIKEAQKTFRVTDVNQFVEPGTYLRVHVHPKRYPRCYEIDWRSRIIAVEESYVVLDKPAGTSEKKVKKIYLALAASPLPIGIIKHYMRPTNTAPRLISEELLKGFLISVLYCGFNPVNLLTADGIKGWHICQLEVMECRKIPWPAIVVQDEYCVEDCGWLSQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAAIAEMINPGLNPFGKYNKDFSSESEKETAVINWIAQHGKEPSVAIGLQACQISWDDDEYIYRAGLPWWRC*