AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1431490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1431490 MtrunA17_Chr7g0272811 75.111 450 74 5 4 419 2 447 0.0 666
Msa1431490 MtrunA17_Chr2g0288091 66.385 473 107 7 1 421 32 504 0.0 614
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1431490 AT4G21770.1 52.511 438 122 7 46 420 58 472 1.33e-158 456
Msa1431490 AT4G21770.2 53.846 416 108 6 66 420 1 393 9.24e-155 443

Find 128 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTCAACAAGCATGAATT+TGG 0.218911 tig0026841:-23027 Msa1431490:CDS
AAGAAACGGCTGTAATAAAT+TGG 0.246669 tig0026841:-18891 Msa1431490:CDS
ACATTCATATATGAATTCTT+TGG 0.275373 tig0026841:+18226 None:intergenic
GTTGCAGATCTGATTCAATT+TGG 0.281393 tig0026841:-22722 Msa1431490:CDS
TCTGCAGTCAATAAATTTAC+AGG 0.294359 tig0026841:+20382 None:intergenic
ACAACTAAGTGTTCAATTCT+TGG 0.294603 tig0026841:+22904 None:intergenic
TGCTCTGCAGAGTTGCTAAA+AGG 0.301140 tig0026841:-20439 Msa1431490:intron
CTGTCGTAGCCTCGGCGTTC+CGG 0.315206 tig0026841:-23085 Msa1431490:CDS
TTCAAGCTTGTCAAATTTCA+TGG 0.315468 tig0026841:-18828 Msa1431490:CDS
TGTAAAATCAACCTTCTTAC+TGG 0.321032 tig0026841:-20226 Msa1431490:CDS
TACATAGTATCACCAATTAT+TGG 0.340825 tig0026841:+19000 None:intergenic
ACTTGATCTTGGTCTATTAG+AGG 0.347209 tig0026841:-18413 Msa1431490:three_prime_UTR
CAACAATGAGGTGAGAATTA+TGG 0.352096 tig0026841:+18308 None:intergenic
CATTCATATATGAATTCTTT+GGG 0.352728 tig0026841:+18227 None:intergenic
ACAATACATCTGTAAAGCTT+TGG 0.353276 tig0026841:-22860 Msa1431490:CDS
TTTACTCCTTCACGTTGAGC+TGG 0.355157 tig0026841:+23156 None:intergenic
GAGGTGTTTGTTAAGTGATA+TGG 0.358711 tig0026841:+23044 None:intergenic
GCTTGCAAGGCACCAATAAT+TGG 0.358878 tig0026841:-19012 Msa1431490:CDS
AATCCTGGACTTAATCCATT+TGG 0.359578 tig0026841:-18949 Msa1431490:CDS
GGGGAGTCCATAGTGTTAAA+AGG 0.359708 tig0026841:+18503 None:intergenic
ACAGAGCTGGTTTGCCTTGG+TGG 0.361729 tig0026841:-18786 Msa1431490:CDS
ATTGTATCTATACTTGATCT+TGG 0.368993 tig0026841:-18424 Msa1431490:three_prime_UTR
GTAGCGGTTGGAGGAGGTTC+CGG 0.372880 tig0026841:+22674 None:intergenic
ATGAAATTTGACAAGCTTGA+AGG 0.384279 tig0026841:+18830 None:intergenic
TTACAGATGTATTGTAAAAC+AGG 0.388608 tig0026841:+22868 None:intergenic
ATTTAGTCCAACAGCACATC+TGG 0.397876 tig0026841:+18722 None:intergenic
GCAGCTTCTCCTTTACCAAT+TGG 0.403389 tig0026841:-21202 Msa1431490:CDS
CAGCTGCCGCGGAACAAGAT+TGG 0.406189 tig0026841:+23105 None:intergenic
GAAAATGAAGAGTGTGTACC+TGG 0.406289 tig0026841:+18482 None:intergenic
CAACTGTCATGGGTGGATAT+AGG 0.416224 tig0026841:+18194 None:intergenic
CTGATAAGTGTCTTATATTG+TGG 0.425243 tig0026841:-20412 Msa1431490:CDS
TGCACTCGCAGGTAAGTTCC+TGG 0.426326 tig0026841:+22518 None:intergenic
CGGCGTCATGCTTGTGATCA+AGG 0.427502 tig0026841:-18566 Msa1431490:three_prime_UTR
CAAAGAAGCAACTGAACCAT+TGG 0.428367 tig0026841:-22630 Msa1431490:CDS
ATTTACCTAGGATAACGCTT+GGG 0.431357 tig0026841:+22488 None:intergenic
CACAATATAAGACACTTATC+AGG 0.431409 tig0026841:+20413 None:intergenic
AGTCGAGGAGCCGTGTTAGT+AGG 0.435108 tig0026841:+21157 None:intergenic
TGAAGGAGTAAAAGATAAGA+TGG 0.435507 tig0026841:-23145 Msa1431490:exon
TTGAACAACAATAGCTGGCC+AGG 0.441571 tig0026841:+20303 None:intergenic
AGGTGTTTGTTAAGTGATAT+GGG 0.442132 tig0026841:+23045 None:intergenic
ATGAATTTGGTTGGTGTTGT+CGG 0.448484 tig0026841:-23014 Msa1431490:CDS
GAAGCAATCGATCATACTTC+GGG 0.456347 tig0026841:+22950 None:intergenic
CGCGGCAGCTGTCGTAGCCT+CGG 0.459951 tig0026841:-23093 Msa1431490:CDS
GCTTCGAGAAATCTGACAAA+TGG 0.460197 tig0026841:-18361 Msa1431490:three_prime_UTR
TTTACAGAGCTGGTTTGCCT+TGG 0.460289 tig0026841:-18789 Msa1431490:CDS
AATATTGTGTTGAAGATTGT+GGG 0.461791 tig0026841:-20276 Msa1431490:CDS
TAGCCTCGGCGTTCCGGATG+CGG 0.465407 tig0026841:-23079 Msa1431490:CDS
AGCTCAATTTGCTGCTTGCA+AGG 0.465415 tig0026841:-19025 Msa1431490:CDS
TTAGGTGCTATGAGATTGAC+TGG 0.466195 tig0026841:-22382 Msa1431490:intron
TCTTACTGGTCGAACTCATC+AGG 0.474622 tig0026841:-20212 Msa1431490:intron
GGAACCGCACTCGCCGCATC+CGG 0.475158 tig0026841:+23066 None:intergenic
ATTTGCTCTGCAGTAGCGGT+TGG 0.475754 tig0026841:+22662 None:intergenic
TTACTCCTTCACGTTGAGCT+GGG 0.475952 tig0026841:+23157 None:intergenic
TGCTCTGCAGTAGCGGTTGG+AGG 0.479465 tig0026841:+22665 None:intergenic
AATAGCAGATTGCATAAAAG+AGG 0.480696 tig0026841:+18460 None:intergenic
AAAGAGCCTAGTGTTGCAAT+TGG 0.490916 tig0026841:-18853 Msa1431490:CDS
ATTGACTGCAGATGGTATCA+AGG 0.491296 tig0026841:-20371 Msa1431490:CDS
GATGAATACATTTACAGAGC+TGG 0.491345 tig0026841:-18799 Msa1431490:CDS
ATGAGATTGACTGGAGATCA+AGG 0.491460 tig0026841:-22373 Msa1431490:CDS
TTTCCAAATGGATTAAGTCC+AGG 0.503496 tig0026841:+18946 None:intergenic
TAGTGCTTAATGATTCCAAT+TGG 0.508620 tig0026841:+21187 None:intergenic
TCATCTTGAACAACAATAGC+TGG 0.509716 tig0026841:+20298 None:intergenic
TGGAATGCAGAAAGATTCCC+TGG 0.510667 tig0026841:-20321 Msa1431490:CDS
GCGTGCGACATTTGCCACTT+CGG 0.510997 tig0026841:-18586 Msa1431490:three_prime_UTR
TATTTGTCATCTTGAGGTCA+TGG 0.513587 tig0026841:-20341 Msa1431490:CDS
TAAGATGGGTTCGGTGGCGG+TGG 0.514367 tig0026841:-23130 Msa1431490:exon
ATCATCTCTGCAATTGCAGC+AGG 0.520543 tig0026841:+18973 None:intergenic
CACTGCAATGGTAATGTTGA+GGG 0.525656 tig0026841:-18541 Msa1431490:three_prime_UTR
AGTAAAAGATAAGATGGGTT+CGG 0.528067 tig0026841:-23139 Msa1431490:exon
TCAAGCTTGTCAAATTTCAT+GGG 0.528140 tig0026841:-18827 Msa1431490:CDS
CTTGGCGGAGATTTGTGTGT+AGG 0.530094 tig0026841:+22922 None:intergenic
TGAACTTATCTATTGTGTTG+CGG 0.531789 tig0026841:-18623 Msa1431490:three_prime_UTR
TTAATGATTCCAATTGGTAA+AGG 0.533290 tig0026841:+21193 None:intergenic
GGAAGCAATCGATCATACTT+CGG 0.533740 tig0026841:+22949 None:intergenic
CAATAGATAAGTTCAATTGA+AGG 0.536839 tig0026841:+18631 None:intergenic
ATTGCAGAGATGATTAATCC+TGG 0.537124 tig0026841:-18964 Msa1431490:CDS
TCTGCAGTAGCGGTTGGAGG+AGG 0.537831 tig0026841:+22668 None:intergenic
GTAAATTTATTGACTGCAGA+TGG 0.538147 tig0026841:-20379 Msa1431490:CDS
TGGTGGAGGTGTTAAAATGC+TGG 0.538363 tig0026841:-18769 Msa1431490:exon
GAGCTGGTTTGCCTTGGTGG+AGG 0.539193 tig0026841:-18783 Msa1431490:CDS
GTAGCTTACTGTTTCACTGA+TGG 0.541763 tig0026841:+22972 None:intergenic
GAATATTGTGTTGAAGATTG+TGG 0.542188 tig0026841:-20277 Msa1431490:CDS
TCTAATTTGCTCTGCAGTAG+CGG 0.543133 tig0026841:+22658 None:intergenic
AGATAAGATGGGTTCGGTGG+CGG 0.545265 tig0026841:-23133 Msa1431490:exon
GAATTTGGCACTTACAAATG+AGG 0.550102 tig0026841:+22832 None:intergenic
AATTTACCTAGGATAACGCT+TGG 0.552883 tig0026841:+22487 None:intergenic
CGAGGCTACGACAGCTGCCG+CGG 0.558845 tig0026841:+23094 None:intergenic
CTGGAATTGTTCTTGAGTTG+AGG 0.559302 tig0026841:-18750 Msa1431490:three_prime_UTR
CGTTCCGGATGCGGCGAGTG+CGG 0.562174 tig0026841:-23070 Msa1431490:CDS
CACTTAGTTGTTTCACGAGG+AGG 0.563811 tig0026841:-22892 Msa1431490:CDS
ACTAAGTGTTCAATTCTTGG+CGG 0.566453 tig0026841:+22907 None:intergenic
TGAAGGCCAATTGCAACACT+AGG 0.568515 tig0026841:+18847 None:intergenic
AACCAAATTCATGCTTGTTG+AGG 0.571349 tig0026841:+23025 None:intergenic
ATGGCATATTTGTCATCTTG+AGG 0.572439 tig0026841:-20347 Msa1431490:CDS
TCAACAAGCATGAATTTGGT+TGG 0.576730 tig0026841:-23023 Msa1431490:CDS
TTGACTGCAGATGGTATCAA+GGG 0.577829 tig0026841:-20370 Msa1431490:CDS
GATGAGTTCGACCAGTAAGA+AGG 0.590412 tig0026841:+20215 None:intergenic
TTACATACAGAAGTACCAGC+AGG 0.592818 tig0026841:+22311 None:intergenic
GAAGGAGTAAAAGATAAGAT+GGG 0.595662 tig0026841:-23144 Msa1431490:exon
ACACTGCAATGGTAATGTTG+AGG 0.596965 tig0026841:-18542 Msa1431490:three_prime_UTR
GTGAATCAGTTTGTTGAACC+AGG 0.597573 tig0026841:-22536 Msa1431490:CDS
GCTCCTCGACTTATTTCTGA+AGG 0.598052 tig0026841:-21145 Msa1431490:intron
CTGCAGATGGTATCAAGGGA+TGG 0.598332 tig0026841:-20366 Msa1431490:CDS
GGATATGCCAGATGTGCTGT+TGG 0.602891 tig0026841:-18729 Msa1431490:three_prime_UTR
CTGCAGTCAATAAATTTACA+GGG 0.604165 tig0026841:+20383 None:intergenic
TGCACCCCAAGCGTTATCCT+AGG 0.608599 tig0026841:-22493 Msa1431490:intron
CTATATGCGTCCTACTAACA+CGG 0.608861 tig0026841:-21167 Msa1431490:CDS
TTTAACACTATGGACTCCCC+AGG 0.613220 tig0026841:-18500 Msa1431490:three_prime_UTR
GAAGCTTTGACACAAACTGA+AGG 0.614896 tig0026841:+18379 None:intergenic
TCACAAGCATGACGCCGAAG+TGG 0.619797 tig0026841:+18572 None:intergenic
GTGATCAAGGAACACTGCAA+TGG 0.620949 tig0026841:-18553 Msa1431490:three_prime_UTR
ACATGCTAGAAGAACAAATG+AGG 0.624695 tig0026841:+18283 None:intergenic
TGAACAACAATAGCTGGCCA+GGG 0.627097 tig0026841:+20304 None:intergenic
CAAAACCCAGCTCAACGTGA+AGG 0.628480 tig0026841:-23162 Msa1431490:five_prime_UTR
GTGGCGCCAATCTTGTTCCG+CGG 0.631844 tig0026841:-23111 Msa1431490:CDS
AAAATGAAGAGTGTGTACCT+GGG 0.632836 tig0026841:+18483 None:intergenic
TTTACCTAGGATAACGCTTG+GGG 0.635968 tig0026841:+22489 None:intergenic
ACAAATGAGGTGCAACAATG+AGG 0.638510 tig0026841:+18296 None:intergenic
GAGATCAAGGATCATAGCTG+TGG 0.639469 tig0026841:-22360 Msa1431490:CDS
ATCAAGGATCATAGCTGTGG+AGG 0.645787 tig0026841:-22357 Msa1431490:CDS
AAAAGATAAGATGGGTTCGG+TGG 0.652380 tig0026841:-23136 Msa1431490:exon
AAATGAAGAGTGTGTACCTG+GGG 0.659481 tig0026841:+18484 None:intergenic
ACTGATTCACATCAGTTACA+CGG 0.683807 tig0026841:+22549 None:intergenic
GGAGATTTGTGTGTAGGACA+TGG 0.688633 tig0026841:+22928 None:intergenic
ATAAATTGGATTGCACAACA+CGG 0.689490 tig0026841:-18877 Msa1431490:CDS
TTACCTTCAGAAATAAGTCG+AGG 0.695194 tig0026841:+21142 None:intergenic
ATTGTGTTGAAGATTGTGGG+TGG 0.705277 tig0026841:-20273 Msa1431490:CDS
GAACACTTAGTTGTTTCACG+AGG 0.728290 tig0026841:-22895 Msa1431490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTAAATAAAATTTGAAT+AGG - tig0026841:20830-20849 Msa1431490:intron 10.0%
!!! AATGTATTCTTTTCTATATT+TGG - tig0026841:19528-19547 Msa1431490:intron 15.0%
!!! CACTTAATTATTTTTTTTTC+AGG - tig0026841:20124-20143 Msa1431490:intron 15.0%
!!! TCAAATATTATAAGTTGATT+AGG + tig0026841:20813-20832 None:intergenic 15.0%
!!! TTTAAAGTTTAACTTTACAA+TGG + tig0026841:20913-20932 None:intergenic 15.0%
!!! TGGTATTTTTAATGAAAAAT+AGG - tig0026841:21586-21605 Msa1431490:intron 15.0%
!! ATAATCAGATAAAAGAAATA+AGG + tig0026841:22291-22310 None:intergenic 15.0%
!!! GGCATTCTTAATATATTTTT+AGG - tig0026841:18981-19000 Msa1431490:CDS 20.0%
!!! ATTCTTTTCTATATTTGGTT+AGG - tig0026841:19533-19552 Msa1431490:intron 20.0%
!!! TATTTCATTTTAAGGTTCTT+GGG + tig0026841:20296-20315 None:intergenic 20.0%
!!! TACTTCACTATTTCATTTTA+AGG + tig0026841:20304-20323 None:intergenic 20.0%
!! TACAACTAACTTAACTATAA+TGG + tig0026841:20516-20535 None:intergenic 20.0%
!!! TTTAGTTTTATACTACATGA+AGG - tig0026841:20717-20736 Msa1431490:intron 20.0%
!! TTTAACCATATGATTTAGTT+AGG - tig0026841:20760-20779 Msa1431490:intron 20.0%
!! AAATTCAAACAGTACATAAA+AGG + tig0026841:21207-21226 None:intergenic 20.0%
!!! TGATTGATAATTCTTATCTT+CGG - tig0026841:21298-21317 Msa1431490:intron 20.0%
!!! AAATATAGCTCAATTTTAGA+TGG + tig0026841:21488-21507 None:intergenic 20.0%
!!! CATAATGTTTTGAAATTTGT+GGG + tig0026841:21721-21740 None:intergenic 20.0%
!!! TAAAAGGGTATTAGAAAAAA+GGG + tig0026841:21960-21979 None:intergenic 20.0%
!! AGCATTTACATGATATATAT+AGG - tig0026841:22120-22139 Msa1431490:intron 20.0%
!! ATATATAGGAGATACTATAT+AGG - tig0026841:22134-22153 Msa1431490:intron 20.0%
!! CTTATCATATCATGTAAATA+GGG + tig0026841:22201-22220 None:intergenic 20.0%
!! TATATTTACAACAGTTTCAA+AGG - tig0026841:22237-22256 Msa1431490:intron 20.0%
!! TTTAAGTCACTATATCAATA+GGG + tig0026841:22320-22339 None:intergenic 20.0%
!! ATTTAAGTCACTATATCAAT+AGG + tig0026841:22321-22340 None:intergenic 20.0%
!!! TCTTTATTGTATTTTCCAAA+TGG + tig0026841:22450-22469 None:intergenic 20.0%
!! CATTCATATATGAATTCTTT+GGG + tig0026841:23157-23176 None:intergenic 20.0%
!! ACATTCATATATGAATTCTT+TGG + tig0026841:23158-23177 None:intergenic 20.0%
! TTACAGATGTATTGTAAAAC+AGG + tig0026841:18516-18535 None:intergenic 25.0%
!! TAAAATTCTAGCTAGGAATT+TGG + tig0026841:18567-18586 None:intergenic 25.0%
! TGATAAAAATTGATTACGAG+TGG + tig0026841:18595-18614 None:intergenic 25.0%
!! CTTTATAGTTTTTCCTTTGA+GGG + tig0026841:18795-18814 None:intergenic 25.0%
! ACTAACATTCTAATTTACCT+AGG + tig0026841:18908-18927 None:intergenic 25.0%
! AGGTAAATTAGAATGTTAGT+TGG - tig0026841:18908-18927 Msa1431490:CDS 25.0%
! TTAGAATGTTAGTTGGAAAT+TGG - tig0026841:18915-18934 Msa1431490:CDS 25.0%
!! TTTTTCTGAGTTCATATAGT+GGG + tig0026841:19101-19120 None:intergenic 25.0%
! AAAGTTATTTATCCCTGTAT+AGG - tig0026841:19118-19137 Msa1431490:intron 25.0%
! TTCTATAAGAATCCTATACA+GGG + tig0026841:19133-19152 None:intergenic 25.0%
! ATTCTATAAGAATCCTATAC+AGG + tig0026841:19134-19153 None:intergenic 25.0%
! AAAAACCATTATGCTTGATA+AGG + tig0026841:19269-19288 None:intergenic 25.0%
! ATAGAAAAGAATACATTGCA+CGG + tig0026841:19525-19544 None:intergenic 25.0%
!! TTTTCTATATTTGGTTAGGT+AGG - tig0026841:19537-19556 Msa1431490:intron 25.0%
! TTTCTATATTTGGTTAGGTA+GGG - tig0026841:19538-19557 Msa1431490:intron 25.0%
! TAACAGTATAAGCTATGAAA+TGG + tig0026841:19811-19830 None:intergenic 25.0%
! TTAATGATTCCAATTGGTAA+AGG + tig0026841:20191-20210 None:intergenic 25.0%
!!! CTATTTCATTTTAAGGTTCT+TGG + tig0026841:20297-20316 None:intergenic 25.0%
! ATGTATTATAAGCAACTTCT+AGG - tig0026841:20348-20367 Msa1431490:CDS 25.0%
! TGTATTATAAGCAACTTCTA+GGG - tig0026841:20349-20368 Msa1431490:CDS 25.0%
! TCAAGAAGTGGAATATTTAA+AGG + tig0026841:20631-20650 None:intergenic 25.0%
!!! CTTTTATTCTTTTCAAGAAG+TGG + tig0026841:20643-20662 None:intergenic 25.0%
! CACTTCTTGAAAAGAATAAA+AGG - tig0026841:20641-20660 Msa1431490:intron 25.0%
! AATATTGTGTTGAAGATTGT+GGG - tig0026841:21105-21124 Msa1431490:intron 25.0%
!! GATTGATAATTCTTATCTTC+GGG - tig0026841:21299-21318 Msa1431490:intron 25.0%
!!! AATAGAGTTTGTTAGTACAA+CGG + tig0026841:21450-21469 None:intergenic 25.0%
!! CATGAAATTAAAACCCATTT+TGG - tig0026841:21642-21661 Msa1431490:intron 25.0%
! ATTTGTGGGATAAATATTCT+CGG + tig0026841:21707-21726 None:intergenic 25.0%
!!! GCATAATGTTTTGAAATTTG+TGG + tig0026841:21722-21741 None:intergenic 25.0%
!!! GTAAAAGGGTATTAGAAAAA+AGG + tig0026841:21961-21980 None:intergenic 25.0%
! GCTTATCATATCATGTAAAT+AGG + tig0026841:22202-22221 None:intergenic 25.0%
! TACATAGTATCACCAATTAT+TGG + tig0026841:22384-22403 None:intergenic 25.0%
! CAATAGATAAGTTCAATTGA+AGG + tig0026841:22753-22772 None:intergenic 25.0%
! ATTGTATCTATACTTGATCT+TGG - tig0026841:22957-22976 Msa1431490:CDS 25.0%
! GTTTAGTTACATGAAAAATC+TGG + tig0026841:23135-23154 None:intergenic 25.0%
TGAAGGAGTAAAAGATAAGA+TGG - tig0026841:18236-18255 Msa1431490:three_prime_UTR 30.0%
GAAGGAGTAAAAGATAAGAT+GGG - tig0026841:18237-18256 Msa1431490:three_prime_UTR 30.0%
! AGTAAAAGATAAGATGGGTT+CGG - tig0026841:18242-18261 Msa1431490:three_prime_UTR 30.0%
! AGGTGTTTGTTAAGTGATAT+GGG + tig0026841:18339-18358 None:intergenic 30.0%
ACAACTAAGTGTTCAATTCT+TGG + tig0026841:18480-18499 None:intergenic 30.0%
ACAATACATCTGTAAAGCTT+TGG - tig0026841:18521-18540 Msa1431490:three_prime_UTR 30.0%
! GGAAGAATAAAATTCTAGCT+AGG + tig0026841:18574-18593 None:intergenic 30.0%
! CCTTTATAGTTTTTCCTTTG+AGG + tig0026841:18796-18815 None:intergenic 30.0%
CCTCAAAGGAAAAACTATAA+AGG - tig0026841:18793-18812 Msa1431490:CDS 30.0%
! AGCCATGATATGATAATGTT+TGG - tig0026841:18960-18979 Msa1431490:CDS 30.0%
TGCCAAACATTATCATATCA+TGG + tig0026841:18965-18984 None:intergenic 30.0%
! TTTTCTGAGTTCATATAGTG+GGG + tig0026841:19100-19119 None:intergenic 30.0%
! CTTTTTCTGAGTTCATATAG+TGG + tig0026841:19102-19121 None:intergenic 30.0%
ATCAATGTAGAAATTGCCAT+TGG + tig0026841:19228-19247 None:intergenic 30.0%
ATGGCAATTTCTACATTGAT+AGG - tig0026841:19228-19247 Msa1431490:intron 30.0%
TCTCAAGAATGATTGTTTGT+AGG - tig0026841:19318-19337 Msa1431490:intron 30.0%
ATACATTGCACGGAAAATTT+AGG + tig0026841:19515-19534 None:intergenic 30.0%
TTCTATATTTGGTTAGGTAG+GGG - tig0026841:19539-19558 Msa1431490:intron 30.0%
! TTTGATGGGTAGTTATCAAA+GGG + tig0026841:19629-19648 None:intergenic 30.0%
! ATTTGATGGGTAGTTATCAA+AGG + tig0026841:19630-19649 None:intergenic 30.0%
ATTTATGTGTAGCGTAGTAT+TGG - tig0026841:19729-19748 Msa1431490:intron 30.0%
TAGTGCTTAATGATTCCAAT+TGG + tig0026841:20197-20216 None:intergenic 30.0%
ATTGTCAGAATTCTGAGTAA+GGG + tig0026841:20480-20499 None:intergenic 30.0%
TTACTCAGAATTCTGACAAT+CGG - tig0026841:20480-20499 Msa1431490:intron 30.0%
ATATTTAAAGGAGAGAGGAT+AGG + tig0026841:20619-20638 None:intergenic 30.0%
TTGTTATAGTACAACAGGTT+TGG + tig0026841:20862-20881 None:intergenic 30.0%
TCATGTTGTTATAGTACAAC+AGG + tig0026841:20867-20886 None:intergenic 30.0%
ATAACAACATGATGTGTCAA+TGG - tig0026841:20875-20894 Msa1431490:intron 30.0%
TAACAACATGATGTGTCAAT+GGG - tig0026841:20876-20895 Msa1431490:intron 30.0%
CACAATATAAGACACTTATC+AGG + tig0026841:20971-20990 None:intergenic 30.0%
CTGATAAGTGTCTTATATTG+TGG - tig0026841:20969-20988 Msa1431490:intron 30.0%
CTGCAGTCAATAAATTTACA+GGG + tig0026841:21001-21020 None:intergenic 30.0%
TCTGCAGTCAATAAATTTAC+AGG + tig0026841:21002-21021 None:intergenic 30.0%
! GTAAATTTATTGACTGCAGA+TGG - tig0026841:21002-21021 Msa1431490:intron 30.0%
GAATATTGTGTTGAAGATTG+TGG - tig0026841:21104-21123 Msa1431490:intron 30.0%
TGTAAAATCAACCTTCTTAC+TGG - tig0026841:21155-21174 Msa1431490:CDS 30.0%
ACTAACAAACTCTATTGTTC+TGG - tig0026841:21454-21473 Msa1431490:intron 30.0%
ATAAACTTCCAGAAAACGAA+TGG + tig0026841:21558-21577 None:intergenic 30.0%
! CTGGAAGTTTATTTCTTCTA+TGG - tig0026841:21566-21585 Msa1431490:intron 30.0%
AAGAAACGGCTGTAATAAAT+TGG - tig0026841:22490-22509 Msa1431490:intron 30.0%
ATAAATTGGATTGCACAACA+CGG - tig0026841:22504-22523 Msa1431490:CDS 30.0%
ATGAAATTTGACAAGCTTGA+AGG + tig0026841:22554-22573 None:intergenic 30.0%
TTCAAGCTTGTCAAATTTCA+TGG - tig0026841:22553-22572 Msa1431490:CDS 30.0%
TCAAGCTTGTCAAATTTCAT+GGG - tig0026841:22554-22573 Msa1431490:CDS 30.0%
TGAACTTATCTATTGTGTTG+CGG - tig0026841:22758-22777 Msa1431490:intron 30.0%
! CAGTAATCCTTTTAACACTA+TGG - tig0026841:22871-22890 Msa1431490:CDS 30.0%
AATAGCAGATTGCATAAAAG+AGG + tig0026841:22924-22943 None:intergenic 30.0%
TAGTTACATGAAAAATCTGG+TGG + tig0026841:23132-23151 None:intergenic 30.0%
! GAGGTGTTTGTTAAGTGATA+TGG + tig0026841:18340-18359 None:intergenic 35.0%
! AACCAAATTCATGCTTGTTG+AGG + tig0026841:18359-18378 None:intergenic 35.0%
TCAACAAGCATGAATTTGGT+TGG - tig0026841:18358-18377 Msa1431490:three_prime_UTR 35.0%
!! ATGAATTTGGTTGGTGTTGT+CGG - tig0026841:18367-18386 Msa1431490:three_prime_UTR 35.0%
ACTAAGTGTTCAATTCTTGG+CGG + tig0026841:18477-18496 None:intergenic 35.0%
GAATTTGGCACTTACAAATG+AGG + tig0026841:18552-18571 None:intergenic 35.0%
ATAAGACTTAGTGTGTGTGT+TGG + tig0026841:18626-18645 None:intergenic 35.0%
!! CACTAAGTCTTATTTCGTGA+AGG - tig0026841:18633-18652 Msa1431490:three_prime_UTR 35.0%
GTTGCAGATCTGATTCAATT+TGG - tig0026841:18659-18678 Msa1431490:three_prime_UTR 35.0%
!! GTATTTTGCTCTTGTTTCTC+CGG - tig0026841:18688-18707 Msa1431490:three_prime_UTR 35.0%
! ACTGATTCACATCAGTTACA+CGG + tig0026841:18835-18854 None:intergenic 35.0%
ATTTACCTAGGATAACGCTT+GGG + tig0026841:18896-18915 None:intergenic 35.0%
AATTTACCTAGGATAACGCT+TGG + tig0026841:18897-18916 None:intergenic 35.0%
!!! GTAGTTTTAGATAAACCTGC+TGG - tig0026841:19055-19074 Msa1431490:intron 35.0%
CCATTGGATACAAAAACTAC+AGG + tig0026841:19212-19231 None:intergenic 35.0%
! CCTGTAGTTTTTGTATCCAA+TGG - tig0026841:19209-19228 Msa1431490:intron 35.0%
ATTTCTACATTGATAGGCGT+TGG - tig0026841:19234-19253 Msa1431490:intron 35.0%
TTTCTACATTGATAGGCGTT+GGG - tig0026841:19235-19254 Msa1431490:intron 35.0%
AAGGTCCTTATCAAGCATAA+TGG - tig0026841:19261-19280 Msa1431490:intron 35.0%
ACAACTTTCTTCAATGTTGC+CGG + tig0026841:19571-19590 None:intergenic 35.0%
! TTGATGGGTAGTTATCAAAG+GGG + tig0026841:19628-19647 None:intergenic 35.0%
CGTGCAGTTATCAATTTGAT+GGG + tig0026841:19643-19662 None:intergenic 35.0%
! CCATCAAATTGATAACTGCA+CGG - tig0026841:19641-19660 Msa1431490:intron 35.0%
! CCGAATTTTGCAATGAAAGA+CGG + tig0026841:19776-19795 None:intergenic 35.0%
CCGTCTTTCATTGCAAAATT+CGG - tig0026841:19773-19792 Msa1431490:intron 35.0%
CGTCTTTCATTGCAAAATTC+GGG - tig0026841:19774-19793 Msa1431490:intron 35.0%
TATAAAATCACACTCGCACA+AGG - tig0026841:19984-20003 Msa1431490:intron 35.0%
GTTTGATCTTAGTCGTTAGA+CGG - tig0026841:20015-20034 Msa1431490:intron 35.0%
TTACCTTCAGAAATAAGTCG+AGG + tig0026841:20242-20261 None:intergenic 35.0%
! ATTATAAGCAACTTCTAGGG+AGG - tig0026841:20352-20371 Msa1431490:CDS 35.0%
GATTGTCAGAATTCTGAGTA+AGG + tig0026841:20481-20500 None:intergenic 35.0%
GTGGAATATTTAAAGGAGAG+AGG + tig0026841:20624-20643 None:intergenic 35.0%
ATGCGCCTAACTAAATCATA+TGG + tig0026841:20768-20787 None:intergenic 35.0%
TAGGTAGCTAATTTCCATCT+TGG + tig0026841:20794-20813 None:intergenic 35.0%
ATGGCATATTTGTCATCTTG+AGG - tig0026841:21034-21053 Msa1431490:intron 35.0%
TATTTGTCATCTTGAGGTCA+TGG - tig0026841:21040-21059 Msa1431490:intron 35.0%
TCATCTTGAACAACAATAGC+TGG + tig0026841:21086-21105 None:intergenic 35.0%
GACATTACACACACCAAAAT+GGG + tig0026841:21658-21677 None:intergenic 35.0%
AGACATTACACACACCAAAA+TGG + tig0026841:21659-21678 None:intergenic 35.0%
TGGTGTGTGTAATGTCTATT+CGG - tig0026841:21662-21681 Msa1431490:intron 35.0%
CAAAACATTATGCACTCTAG+TGG - tig0026841:21729-21748 Msa1431490:intron 35.0%
TCTATACCCCTCAACAAAAT+GGG - tig0026841:21775-21794 Msa1431490:intron 35.0%
!! GAGATGTTGATTTGTGTGTT+TGG + tig0026841:21805-21824 None:intergenic 35.0%
TAATGTTCCATCTCGTTCTT+GGG - tig0026841:21857-21876 Msa1431490:intron 35.0%
TTATAAGATAGCACGCTCTT+AGG + tig0026841:21892-21911 None:intergenic 35.0%
AAGCCTATCCAAAATCAATC+CGG + tig0026841:22035-22054 None:intergenic 35.0%
GGAGATACTATATAGGCTAA+AGG - tig0026841:22141-22160 Msa1431490:intron 35.0%
ATTGCAGAGATGATTAATCC+TGG - tig0026841:22417-22436 Msa1431490:intron 35.0%
AATCCTGGACTTAATCCATT+TGG - tig0026841:22432-22451 Msa1431490:intron 35.0%
!! TTTCCAAATGGATTAAGTCC+AGG + tig0026841:22438-22457 None:intergenic 35.0%
CAGTGAGAGTGAAAAAGAAA+CGG - tig0026841:22476-22495 Msa1431490:intron 35.0%
GATGAATACATTTACAGAGC+TGG - tig0026841:22582-22601 Msa1431490:CDS 35.0%
! AAAATGAAGAGTGTGTACCT+GGG + tig0026841:22901-22920 None:intergenic 35.0%
ACTTGATCTTGGTCTATTAG+AGG - tig0026841:22968-22987 Msa1431490:CDS 35.0%
CAACAATGAGGTGAGAATTA+TGG + tig0026841:23076-23095 None:intergenic 35.0%
ACATGCTAGAAGAACAAATG+AGG + tig0026841:23101-23120 None:intergenic 35.0%
! AAAAGATAAGATGGGTTCGG+TGG - tig0026841:18245-18264 Msa1431490:three_prime_UTR 40.0%
CACCTCAACAAGCATGAATT+TGG - tig0026841:18354-18373 Msa1431490:three_prime_UTR 40.0%
GTAGCTTACTGTTTCACTGA+TGG + tig0026841:18412-18431 None:intergenic 40.0%
GAAGCAATCGATCATACTTC+GGG + tig0026841:18434-18453 None:intergenic 40.0%
GGAAGCAATCGATCATACTT+CGG + tig0026841:18435-18454 None:intergenic 40.0%
! GAACACTTAGTTGTTTCACG+AGG - tig0026841:18486-18505 Msa1431490:three_prime_UTR 40.0%
!!! TAGTGTGTGTGTTGGTTTTG+CGG + tig0026841:18618-18637 None:intergenic 40.0%
!! TCTAATTTGCTCTGCAGTAG+CGG + tig0026841:18726-18745 None:intergenic 40.0%
CAAAGAAGCAACTGAACCAT+TGG - tig0026841:18751-18770 Msa1431490:three_prime_UTR 40.0%
!!! GCTCTTTTTTGCAGAACCAA+TGG + tig0026841:18770-18789 None:intergenic 40.0%
!! GTGAATCAGTTTGTTGAACC+AGG - tig0026841:18845-18864 Msa1431490:CDS 40.0%
TTTACCTAGGATAACGCTTG+GGG + tig0026841:18895-18914 None:intergenic 40.0%
! TTAGGTGCTATGAGATTGAC+TGG - tig0026841:18999-19018 Msa1431490:CDS 40.0%
ATGAGATTGACTGGAGATCA+AGG - tig0026841:19008-19027 Msa1431490:CDS 40.0%
!! TTACATACAGAAGTACCAGC+AGG + tig0026841:19073-19092 None:intergenic 40.0%
! TTCTACATTGATAGGCGTTG+GGG - tig0026841:19236-19255 Msa1431490:intron 40.0%
CCGTGCAGTTATCAATTTGA+TGG + tig0026841:19644-19663 None:intergenic 40.0%
! CAAATTGATAACTGCACGGA+AGG - tig0026841:19645-19664 Msa1431490:intron 40.0%
! ATTCTCTCCGGTGTCAATTT+GGG - tig0026841:19929-19948 Msa1431490:intron 40.0%
AAGAACACCCAAATTGACAC+CGG + tig0026841:19939-19958 None:intergenic 40.0%
CTATATGCGTCCTACTAACA+CGG - tig0026841:20214-20233 Msa1431490:CDS 40.0%
CTGAAGGTAACTACGCAAAT+TGG - tig0026841:20252-20271 Msa1431490:CDS 40.0%
TCCATGGTTCATGGTATTAG+TGG - tig0026841:20381-20400 Msa1431490:CDS 40.0%
CAGAATTCTGAGTAAGGGAA+AGG + tig0026841:20475-20494 None:intergenic 40.0%
ATTGACTGCAGATGGTATCA+AGG - tig0026841:21010-21029 Msa1431490:intron 40.0%
TTGACTGCAGATGGTATCAA+GGG - tig0026841:21011-21030 Msa1431490:intron 40.0%
ATTGTGTTGAAGATTGTGGG+TGG - tig0026841:21108-21127 Msa1431490:intron 40.0%
AAACAGGTTACAGCTCATGA+AGG + tig0026841:21380-21399 None:intergenic 40.0%
ACTGATTGCTTCACTAGCAA+AGG + tig0026841:21411-21430 None:intergenic 40.0%
ACTTCCAGAAAACGAATGGA+GGG + tig0026841:21554-21573 None:intergenic 40.0%
AACTTCCAGAAAACGAATGG+AGG + tig0026841:21555-21574 None:intergenic 40.0%
GTCTATACCCCTCAACAAAA+TGG - tig0026841:21774-21793 Msa1431490:intron 40.0%
CTATACCCCTCAACAAAATG+GGG - tig0026841:21776-21795 Msa1431490:intron 40.0%
ATGAAGGAGAAGAGTCTATG+TGG + tig0026841:21835-21854 None:intergenic 40.0%
ACATAGACTCTTCTCCTTCA+TGG - tig0026841:21834-21853 Msa1431490:intron 40.0%
GAGATGGAACATTACCATGA+AGG + tig0026841:21851-21870 None:intergenic 40.0%
GTAATGTTCCATCTCGTTCT+TGG - tig0026841:21856-21875 Msa1431490:intron 40.0%
! TTGTTTTCGCTCTTTCAACG+CGG + tig0026841:22063-22082 None:intergenic 40.0%
AAAGAGCCTAGTGTTGCAAT+TGG - tig0026841:22528-22547 Msa1431490:CDS 40.0%
! CTGGAATTGTTCTTGAGTTG+AGG - tig0026841:22631-22650 Msa1431490:CDS 40.0%
ATTTAGTCCAACAGCACATC+TGG + tig0026841:22662-22681 None:intergenic 40.0%
! ACACTGCAATGGTAATGTTG+AGG - tig0026841:22839-22858 Msa1431490:intron 40.0%
! CACTGCAATGGTAATGTTGA+GGG - tig0026841:22840-22859 Msa1431490:intron 40.0%
! AAATGAAGAGTGTGTACCTG+GGG + tig0026841:22900-22919 None:intergenic 40.0%
! GAAAATGAAGAGTGTGTACC+TGG + tig0026841:22902-22921 None:intergenic 40.0%
! GAAGCTTTGACACAAACTGA+AGG + tig0026841:23005-23024 None:intergenic 40.0%
GCTTCGAGAAATCTGACAAA+TGG - tig0026841:23020-23039 Msa1431490:CDS 40.0%
ACAAATGAGGTGCAACAATG+AGG + tig0026841:23088-23107 None:intergenic 40.0%
TTACTCCTTCACGTTGAGCT+GGG + tig0026841:18227-18246 None:intergenic 45.0%
TTTACTCCTTCACGTTGAGC+TGG + tig0026841:18228-18247 None:intergenic 45.0%
GGAGATTTGTGTGTAGGACA+TGG + tig0026841:18456-18475 None:intergenic 45.0%
! CACTTAGTTGTTTCACGAGG+AGG - tig0026841:18489-18508 Msa1431490:three_prime_UTR 45.0%
!! CAAAAAAGAGCGTCCCTCAA+AGG - tig0026841:18779-18798 Msa1431490:CDS 45.0%
GAGATCAAGGATCATAGCTG+TGG - tig0026841:19021-19040 Msa1431490:CDS 45.0%
ATCAAGGATCATAGCTGTGG+AGG - tig0026841:19024-19043 Msa1431490:CDS 45.0%
CTACAGGACTTAGCAATGCT+AGG + tig0026841:19196-19215 None:intergenic 45.0%
TTGTAGGCTTGATGCTCAGT+AGG - tig0026841:19334-19353 Msa1431490:intron 45.0%
!! TGTGTAGCGTAGTATTGGCT+AGG - tig0026841:19734-19753 Msa1431490:intron 45.0%
! GATTCTCTCCGGTGTCAATT+TGG - tig0026841:19928-19947 Msa1431490:intron 45.0%
GCAGCTTCTCCTTTACCAAT+TGG - tig0026841:20179-20198 Msa1431490:intron 45.0%
!! GCTCCTCGACTTATTTCTGA+AGG - tig0026841:20236-20255 Msa1431490:CDS 45.0%
GCCACTAATACCATGAACCA+TGG + tig0026841:20385-20404 None:intergenic 45.0%
TCTTGCCTTGTACTGAGAGT+TGG - tig0026841:20431-20450 Msa1431490:CDS 45.0%
CTTGCCTTGTACTGAGAGTT+GGG - tig0026841:20432-20451 Msa1431490:CDS 45.0%
AAAGCCCAACTCTCAGTACA+AGG + tig0026841:20439-20458 None:intergenic 45.0%
TTGTACTGAGAGTTGGGCTT+TGG - tig0026841:20438-20457 Msa1431490:intron 45.0%
GTAAGGGAAAGGAGAGGATT+GGG + tig0026841:20464-20483 None:intergenic 45.0%
AGTAAGGGAAAGGAGAGGAT+TGG + tig0026841:20465-20484 None:intergenic 45.0%
TTCTGAGTAAGGGAAAGGAG+AGG + tig0026841:20470-20489 None:intergenic 45.0%
AGAAGACAGAGTGACACGTT+TGG - tig0026841:20686-20705 Msa1431490:intron 45.0%
GAAGACAGAGTGACACGTTT+GGG - tig0026841:20687-20706 Msa1431490:intron 45.0%
TGCTCTGCAGAGTTGCTAAA+AGG - tig0026841:20942-20961 Msa1431490:intron 45.0%
TGGAATGCAGAAAGATTCCC+TGG - tig0026841:21060-21079 Msa1431490:intron 45.0%
TGAACAACAATAGCTGGCCA+GGG + tig0026841:21080-21099 None:intergenic 45.0%
TTGAACAACAATAGCTGGCC+AGG + tig0026841:21081-21100 None:intergenic 45.0%
GATGAGTTCGACCAGTAAGA+AGG + tig0026841:21169-21188 None:intergenic 45.0%
TCTTACTGGTCGAACTCATC+AGG - tig0026841:21169-21188 Msa1431490:CDS 45.0%
TTCCAGAAAACGAATGGAGG+GGG + tig0026841:21552-21571 None:intergenic 45.0%
CTTCCAGAAAACGAATGGAG+GGG + tig0026841:21553-21572 None:intergenic 45.0%
GGGTATAGACACAACACGTT+TGG + tig0026841:21764-21783 None:intergenic 45.0%
! TGGCTACCCCATTTTGTTGA+GGG + tig0026841:21785-21804 None:intergenic 45.0%
! TTGGCTACCCCATTTTGTTG+AGG + tig0026841:21786-21805 None:intergenic 45.0%
AACATGACCCAAGAACGAGA+TGG + tig0026841:21867-21886 None:intergenic 45.0%
CTCATTCTCTCCTTTGTCCT+TGG - tig0026841:21914-21933 Msa1431490:intron 45.0%
ATTCTCTCCTTTGTCCTTGG+CGG - tig0026841:21917-21936 Msa1431490:intron 45.0%
TAGAAAAAAGGGCCGAGTGA+TGG + tig0026841:21949-21968 None:intergenic 45.0%
! TGAACATCAGAAGCGTGTTC+CGG - tig0026841:21990-22009 Msa1431490:intron 45.0%
!! TGGCCGGATTGATTTTGGAT+AGG - tig0026841:22029-22048 Msa1431490:intron 45.0%
!! AGCTCAATTTGCTGCTTGCA+AGG - tig0026841:22356-22375 Msa1431490:CDS 45.0%
! GCTTGCAAGGCACCAATAAT+TGG - tig0026841:22369-22388 Msa1431490:CDS 45.0%
ATCATCTCTGCAATTGCAGC+AGG + tig0026841:22411-22430 None:intergenic 45.0%
TGAAGGCCAATTGCAACACT+AGG + tig0026841:22537-22556 None:intergenic 45.0%
!! TTTACAGAGCTGGTTTGCCT+TGG - tig0026841:22592-22611 Msa1431490:CDS 45.0%
!! GCATTTTAACACCTCCACCA+AGG + tig0026841:22612-22631 None:intergenic 45.0%
!! TGGTGGAGGTGTTAAAATGC+TGG - tig0026841:22612-22631 Msa1431490:CDS 45.0%
GTGATCAAGGAACACTGCAA+TGG - tig0026841:22828-22847 Msa1431490:intron 45.0%
GGGGAGTCCATAGTGTTAAA+AGG + tig0026841:22881-22900 None:intergenic 45.0%
TTTAACACTATGGACTCCCC+AGG - tig0026841:22881-22900 Msa1431490:CDS 45.0%
CAAAACCCAGCTCAACGTGA+AGG - tig0026841:18219-18238 Msa1431490:three_prime_UTR 50.0%
!! AGATAAGATGGGTTCGGTGG+CGG - tig0026841:18248-18267 Msa1431490:three_prime_UTR 50.0%
CTTGGCGGAGATTTGTGTGT+AGG + tig0026841:18462-18481 None:intergenic 50.0%
ATTTGCTCTGCAGTAGCGGT+TGG + tig0026841:18722-18741 None:intergenic 50.0%
!! ATTGATAGGCGTTGGGGTCA+AGG - tig0026841:19242-19261 Msa1431490:intron 50.0%
TAGGCTTGATGCTCAGTAGG+TGG - tig0026841:19337-19356 Msa1431490:intron 50.0%
GGTTAGGTAGGGGAAACTAC+CGG - tig0026841:19549-19568 Msa1431490:intron 50.0%
AACCTTTGCAACTCGTGCCT+TGG - tig0026841:19593-19612 Msa1431490:intron 50.0%
ACCTTTGCAACTCGTGCCTT+GGG - tig0026841:19594-19613 Msa1431490:intron 50.0%
CAAAGGGGTTGTCAATCCCA+AGG + tig0026841:19613-19632 None:intergenic 50.0%
! TTGATAACTGCACGGAAGGC+TGG - tig0026841:19649-19668 Msa1431490:intron 50.0%
CTGTTCTAACCCACCTGAGT+TGG - tig0026841:19849-19868 Msa1431490:intron 50.0%
!! GTGGTATTGGCTTGGGTCTT+GGG - tig0026841:19876-19895 Msa1431490:intron 50.0%
GAATCGAACCTGAGACCTTG+CGG + tig0026841:19913-19932 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+CGG - tig0026841:19917-19936 Msa1431490:intron 50.0%
AGGAGCAACTCCATGGTTCA+TGG - tig0026841:20372-20391 Msa1431490:CDS 50.0%
GTTAGGCGCATTAGCCAAGA+TGG - tig0026841:20777-20796 Msa1431490:intron 50.0%
CTGCAGATGGTATCAAGGGA+TGG - tig0026841:21015-21034 Msa1431490:intron 50.0%
AGCAAAGGCAGCTGGTAAAC+AGG + tig0026841:21396-21415 None:intergenic 50.0%
TCCAGAAAACGAATGGAGGG+GGG + tig0026841:21551-21570 None:intergenic 50.0%
! GGCTACCCCATTTTGTTGAG+GGG + tig0026841:21784-21803 None:intergenic 50.0%
GTTCAGGCATGGGCGTAAAA+GGG + tig0026841:21975-21994 None:intergenic 50.0%
TGTTCAGGCATGGGCGTAAA+AGG + tig0026841:21976-21995 None:intergenic 50.0%
CGCTTCTGATGTTCAGGCAT+GGG + tig0026841:21985-22004 None:intergenic 50.0%
ACGCTTCTGATGTTCAGGCA+TGG + tig0026841:21986-22005 None:intergenic 50.0%
GGAACACGCTTCTGATGTTC+AGG + tig0026841:21991-22010 None:intergenic 50.0%
! GAACATCAGAAGCGTGTTCC+GGG - tig0026841:21991-22010 Msa1431490:intron 50.0%
TGTTCCGGGTGGTCCAATAA+CGG - tig0026841:22005-22024 Msa1431490:intron 50.0%
GGATATGCCAGATGTGCTGT+TGG - tig0026841:22652-22671 Msa1431490:CDS 50.0%
TGCACTCGCAGGTAAGTTCC+TGG + tig0026841:18866-18885 None:intergenic 55.0%
TGCACCCCAAGCGTTATCCT+AGG - tig0026841:18888-18907 Msa1431490:CDS 55.0%
TCCCAAGGCACGAGTTGCAA+AGG + tig0026841:19598-19617 None:intergenic 55.0%
CAATACCACCAGGCCAACTC+AGG + tig0026841:19865-19884 None:intergenic 55.0%
! CTGAGTTGGCCTGGTGGTAT+TGG - tig0026841:19863-19882 Msa1431490:intron 55.0%
!! TTGGCCTGGTGGTATTGGCT+TGG - tig0026841:19868-19887 Msa1431490:intron 55.0%
!! TGGCCTGGTGGTATTGGCTT+GGG - tig0026841:19869-19888 Msa1431490:intron 55.0%
AGACCCAAGCCAATACCACC+AGG + tig0026841:19875-19894 None:intergenic 55.0%
!! GGTGGTATTGGCTTGGGTCT+TGG - tig0026841:19875-19894 Msa1431490:intron 55.0%
AGTCGAGGAGCCGTGTTAGT+AGG + tig0026841:20227-20246 None:intergenic 55.0%
TCTAGGGAGGAGCAACTCCA+TGG - tig0026841:20365-20384 Msa1431490:CDS 55.0%
GCTTCACTAGCAAAGGCAGC+TGG + tig0026841:21404-21423 None:intergenic 55.0%
CCAGAAAACGAATGGAGGGG+GGG + tig0026841:21550-21569 None:intergenic 55.0%
!! AAAGGGCCGAGTGATGGACT+TGG + tig0026841:21943-21962 None:intergenic 55.0%
GTTCCGGGTGGTCCAATAAC+GGG - tig0026841:22006-22025 Msa1431490:intron 55.0%
TCAATCCGGCCACCCGTTAT+TGG + tig0026841:22021-22040 None:intergenic 55.0%
!! ACGGGTGGCCGGATTGATTT+TGG - tig0026841:22024-22043 Msa1431490:intron 55.0%
!! ACAGAGCTGGTTTGCCTTGG+TGG - tig0026841:22595-22614 Msa1431490:CDS 55.0%
! GCGTGCGACATTTGCCACTT+CGG - tig0026841:22795-22814 Msa1431490:intron 55.0%
TCACAAGCATGACGCCGAAG+TGG + tig0026841:22812-22831 None:intergenic 55.0%
CGGCGTCATGCTTGTGATCA+AGG - tig0026841:22815-22834 Msa1431490:intron 55.0%
!! TAAGATGGGTTCGGTGGCGG+TGG - tig0026841:18251-18270 Msa1431490:three_prime_UTR 60.0%
GTGGCGCCAATCTTGTTCCG+CGG - tig0026841:18270-18289 Msa1431490:three_prime_UTR 60.0%
CAGCTGCCGCGGAACAAGAT+TGG + tig0026841:18279-18298 None:intergenic 60.0%
GTAGCGGTTGGAGGAGGTTC+CGG + tig0026841:18710-18729 None:intergenic 60.0%
TCTGCAGTAGCGGTTGGAGG+AGG + tig0026841:18716-18735 None:intergenic 60.0%
TGCTCTGCAGTAGCGGTTGG+AGG + tig0026841:18719-18738 None:intergenic 60.0%
! CTAACCCACCTGAGTTGGCC+TGG - tig0026841:19854-19873 Msa1431490:intron 60.0%
ACCACCAGGCCAACTCAGGT+GGG + tig0026841:19861-19880 None:intergenic 60.0%
TACCACCAGGCCAACTCAGG+TGG + tig0026841:19862-19881 None:intergenic 60.0%
TCGAACCTGAGACCTTGCGG+AGG + tig0026841:19910-19929 None:intergenic 60.0%
! CCCCCCCTCCATTCGTTTTC+TGG - tig0026841:21547-21566 Msa1431490:intron 60.0%
GACTTGGCCGCCAAGGACAA+AGG + tig0026841:21927-21946 None:intergenic 60.0%
!! AGTGATGGACTTGGCCGCCA+AGG + tig0026841:21934-21953 None:intergenic 60.0%
TGGCGGCCAAGTCCATCACT+CGG - tig0026841:21934-21953 Msa1431490:intron 60.0%
! CATCAGAAGCGTGTTCCGGG+TGG - tig0026841:21994-22013 Msa1431490:intron 60.0%
CCACCCGTTATTGGACCACC+CGG + tig0026841:22012-22031 None:intergenic 60.0%
!! GTGGTCCAATAACGGGTGGC+CGG - tig0026841:22013-22032 Msa1431490:intron 60.0%
!! GAGCTGGTTTGCCTTGGTGG+AGG - tig0026841:22598-22617 Msa1431490:CDS 60.0%
CTGTCGTAGCCTCGGCGTTC+CGG - tig0026841:18296-18315 Msa1431490:three_prime_UTR 65.0%
TAGCCTCGGCGTTCCGGATG+CGG - tig0026841:18302-18321 Msa1431490:three_prime_UTR 65.0%
! ACCCACCTGAGTTGGCCTGG+TGG - tig0026841:19857-19876 Msa1431490:intron 65.0%
! TGGGAGTGTGCTCCTCCGCA+AGG - tig0026841:19895-19914 Msa1431490:intron 65.0%
GTGCTCCTCCGCAAGGTCTC+AGG - tig0026841:19902-19921 Msa1431490:intron 65.0%
! CCGGGTGGTCCAATAACGGG+TGG - tig0026841:22009-22028 Msa1431490:intron 65.0%
CGAGGCTACGACAGCTGCCG+CGG + tig0026841:18290-18309 None:intergenic 70.0%
CGCGGCAGCTGTCGTAGCCT+CGG - tig0026841:18288-18307 Msa1431490:three_prime_UTR 70.0%
CGTTCCGGATGCGGCGAGTG+CGG - tig0026841:18311-18330 Msa1431490:three_prime_UTR 70.0%
GGAACCGCACTCGCCGCATC+CGG + tig0026841:18318-18337 None:intergenic 70.0%
TGGGGTGCACGTGCACTCGC+AGG + tig0026841:18877-18896 None:intergenic 70.0%
TCGCCGCATCCGGAACGCCG+AGG + tig0026841:18308-18327 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0026841 gene 18205 23198 18205 ID=Msa1431490;Name=Msa1431490
tig0026841 mRNA 18205 23198 18205 ID=Msa1431490-mRNA-1;Parent=Msa1431490;Name=Msa1431490-mRNA-1;_AED=0.16;_eAED=0.16;_QI=50|0.6|0.83|1|1|1|6|572|421
tig0026841 exon 18205 19052 18205 ID=Msa1431490-mRNA-1:exon:7638;Parent=Msa1431490-mRNA-1
tig0026841 exon 20213 20451 20213 ID=Msa1431490-mRNA-1:exon:7637;Parent=Msa1431490-mRNA-1
tig0026841 exon 21146 21257 21146 ID=Msa1431490-mRNA-1:exon:7636;Parent=Msa1431490-mRNA-1
tig0026841 exon 22319 22400 22319 ID=Msa1431490-mRNA-1:exon:7635;Parent=Msa1431490-mRNA-1
tig0026841 exon 22494 22748 22494 ID=Msa1431490-mRNA-1:exon:7634;Parent=Msa1431490-mRNA-1
tig0026841 exon 22847 23198 22847 ID=Msa1431490-mRNA-1:exon:7633;Parent=Msa1431490-mRNA-1
tig0026841 five_prime_UTR 23149 23198 23149 ID=Msa1431490-mRNA-1:five_prime_utr;Parent=Msa1431490-mRNA-1
tig0026841 CDS 22847 23148 22847 ID=Msa1431490-mRNA-1:cds;Parent=Msa1431490-mRNA-1
tig0026841 CDS 22494 22748 22494 ID=Msa1431490-mRNA-1:cds;Parent=Msa1431490-mRNA-1
tig0026841 CDS 22319 22400 22319 ID=Msa1431490-mRNA-1:cds;Parent=Msa1431490-mRNA-1
tig0026841 CDS 21146 21257 21146 ID=Msa1431490-mRNA-1:cds;Parent=Msa1431490-mRNA-1
tig0026841 CDS 20213 20451 20213 ID=Msa1431490-mRNA-1:cds;Parent=Msa1431490-mRNA-1
tig0026841 CDS 18777 19052 18777 ID=Msa1431490-mRNA-1:cds;Parent=Msa1431490-mRNA-1
tig0026841 three_prime_UTR 18205 18776 18205 ID=Msa1431490-mRNA-1:three_prime_utr;Parent=Msa1431490-mRNA-1
Gene Sequence

>Msa1431490

ATGGGTTCGGTGGCGGTGGCGCCAATCTTGTTCCGCGGCAGCTGTCGTAGCCTCGGCGTTCCGGATGCGGCGAGTGCGGTTCCCATATCACTTAACAAACACCTCAACAAGCATGAATTTGGTTGGTGTTGTCGGAATTCAAATAACAGTGACGCCATCAGTGAAACAGTAAGCTACCCGAAGTATGATCGATTGCTTCCATGTCCTACACACAAATCTCCGCCAAGAATTGAACACTTAGTTGTTTCACGAGGAGGACCTGTTTTACAATACATCTGTAAAGCTTTGGATCTTCCTCATTTGTTTGTTGCAGATCTGATTCAATTTGGAGCTGTGTATTTTGCTCTTGTTTCTCCGGAACCTCCTCCAACCGCTACTGCAGAGCAAATTAGAATTTTCAAAGAAGCAACTGAACCATTGGTTCTGCAAAAAAGAGCGTCCCTCAAAGGAAAAACTATAAAGGAAGCTCAAAAAACTTTCCGTGTAACTGATGTGAATCAGTTTGTTGAACCAGGAACTTACCTGCGAGTGCACGTGCACCCCAAGCGTTATCCTAGGTGCTATGAGATTGACTGGAGATCAAGGATCATAGCTGTGGAGGAATCGTATGTAGTTTTAGATAAACCTGCTGGTACTTCTGAGAAAAAAGTGAAGAAGATTTATCTTGCTCTCGCAGCTTCTCCTTTACCAATTGGAATCATTAAGCACTATATGCGTCCTACTAACACGGCTCCTCGACTTATTTCTGAAGAGTTGCTAAAAGGCTTCCTGATAAGTGTCTTATATTGTGGATTCAACCCTGTAAATTTATTGACTGCAGATGGTATCAAGGGATGGCATATTTGTCATCTTGAGGTCATGGAATGCAGAAAGATTCCCTGGCCAGCTATTGTTGTTCAAGATGAATATTGTGTTGAAGATTGTGGGTGGCTCTCTCAAGATTACGCGTACGAGTGTAAAATCAACCTTCTTACTGGTCGAACTCATCAGATTCGAGCTCAATTTGCTGCTTGCAAGGCACCAATAATTGGTGATACTATGTATATGCCTGCTGCAATTGCAGAGATGATTAATCCTGGACTTAATCCATTTGGAAAATACAATAAAGATTTCAGCAGTGAGAGTGAAAAAGAAACGGCTGTAATAAATTGGATTGCACAACACGGAAAAGAGCCTAGTGTTGCAATTGGCCTTCAAGCTTGTCAAATTTCATGGGACGATGATGAATACATTTACAGAGCTGGTTTGCCTTGGTGGAGGTGTTAA

Protein sequence

>Msa1431490

MGSVAVAPILFRGSCRSLGVPDAASAVPISLNKHLNKHEFGWCCRNSNNSDAISETVSYPKYDRLLPCPTHKSPPRIEHLVVSRGGPVLQYICKALDLPHLFVADLIQFGAVYFALVSPEPPPTATAEQIRIFKEATEPLVLQKRASLKGKTIKEAQKTFRVTDVNQFVEPGTYLRVHVHPKRYPRCYEIDWRSRIIAVEESYVVLDKPAGTSEKKVKKIYLALAASPLPIGIIKHYMRPTNTAPRLISEELLKGFLISVLYCGFNPVNLLTADGIKGWHICHLEVMECRKIPWPAIVVQDEYCVEDCGWLSQDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAAIAEMINPGLNPFGKYNKDFSSESEKETAVINWIAQHGKEPSVAIGLQACQISWDDDEYIYRAGLPWWRC*