AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1084990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1084990 MtrunA17_Chr1g0203051 47.690 606 314 1 35 640 19 621 0.0 598
Msa1084990 MtrunA17_Chr2g0287651 35.027 748 452 8 47 775 12 744 1.81e-151 465
Msa1084990 MtrunA17_Chr2g0308841 75.221 226 56 0 427 652 1 226 2.03e-126 379
Msa1084990 MtrunA17_Chr5g0448761 31.070 589 392 7 103 678 65 652 2.08e-101 331
Msa1084990 MtrunA17_Chr1g0202341 31.272 566 373 7 103 660 56 613 3.74e-98 320
Msa1084990 MtrunA17_Chr8g0363841 30.526 570 377 7 106 663 25 587 1.43e-85 286
Msa1084990 MtrunA17_Chr1g0198761 29.760 793 479 24 32 790 1 749 1.75e-85 288
Msa1084990 MtrunA17_Chr2g0324011 29.590 561 376 9 104 653 16 568 3.71e-83 277
Msa1084990 MtrunA17_Chr5g0441581 28.966 580 369 13 104 662 38 595 6.92e-74 254
Msa1084990 MtrunA17_Chr5g0440451 27.856 639 406 12 70 678 16 629 1.83e-73 258
Msa1084990 MtrunA17_Chr2g0296781 27.803 651 434 18 113 744 12 645 3.14e-71 248
Msa1084990 MtrunA17_Chr6g0458391 27.402 562 369 10 104 653 231 765 5.95e-71 248
Msa1084990 MtrunA17_Chr6g0458391 35.294 119 66 4 103 217 96 207 2.33e-11 67.8
Msa1084990 MtrunA17_Chr1g0203721 28.799 566 376 12 104 653 69 623 1.54e-70 249
Msa1084990 MtrunA17_Chr2g0287061 30.245 572 322 14 103 654 188 702 5.23e-70 246
Msa1084990 MtrunA17_Chr1g0207551 28.690 603 398 16 70 658 8 592 1.05e-66 237
Msa1084990 MtrunA17_Chr5g0448511 29.211 380 263 2 279 653 19 397 3.75e-66 230
Msa1084990 MtrunA17_Chr3g0118611 29.594 419 287 3 265 678 111 526 4.78e-66 234
Msa1084990 MtrunA17_Chr6g0477261 28.835 541 354 14 224 744 5 534 2.49e-65 230
Msa1084990 MtrunA17_Chr5g0431001 33.095 420 254 8 104 502 67 480 9.10e-64 222
Msa1084990 MtrunA17_Chr2g0276841 28.846 572 365 15 104 652 76 628 3.21e-63 225
Msa1084990 MtrunA17_Chr2g0290391 27.247 712 446 16 68 752 25 691 3.97e-63 225
Msa1084990 MtrunA17_Chr1g0196541 26.889 569 382 12 104 653 3 556 8.74e-61 219
Msa1084990 MtrunA17_Chr3g0082121 26.773 564 379 10 103 653 48 590 3.97e-60 216
Msa1084990 MtrunA17_Chr3g0080351 27.700 574 361 14 103 653 81 623 4.79e-59 216
Msa1084990 MtrunA17_Chr2g0291591 27.723 505 340 11 103 595 69 560 3.77e-57 205
Msa1084990 MtrunA17_Chr2g0329031 25.718 696 454 20 91 754 7 671 7.94e-56 205
Msa1084990 MtrunA17_Chr2g0291581 24.409 635 439 18 103 720 76 686 3.41e-55 202
Msa1084990 MtrunA17_Chr2g0294841 28.546 564 373 12 104 648 51 603 8.99e-54 199
Msa1084990 MtrunA17_Chr1g0164591 27.451 306 206 4 187 485 11 307 4.26e-36 139
Msa1084990 MtrunA17_Chr7g0258861 28.028 289 198 5 104 386 16 300 2.77e-31 124
Msa1084990 MtrunA17_Chr1g0171741 33.607 244 133 4 6 221 13 255 3.28e-30 120
Msa1084990 MtrunA17_Chr8g0389811 37.736 159 93 2 52 209 42 195 5.61e-29 115
Msa1084990 MtrunA17_Chr2g0331371 38.690 168 101 1 42 209 1 166 1.37e-27 111
Msa1084990 MtrunA17_Chr8g0340801 39.048 105 64 0 209 313 1 105 1.38e-22 93.2
Msa1084990 MtrunA17_Chr6g0473421 45.055 91 50 0 83 173 40 130 6.02e-21 90.1
Msa1084990 MtrunA17_Chr1g0172931 42.609 115 59 3 70 180 47 158 4.60e-19 85.1
Msa1084990 MtrunA17_Chr2g0277171 60.241 83 29 2 1 83 1 79 1.36e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1084990 AT4G38180.1 32.218 568 370 9 98 653 70 634 1.41e-96 319
Msa1084990 AT3G06250.2 31.720 558 326 13 103 653 195 704 3.30e-80 274
Msa1084990 AT3G06250.1 31.720 558 326 13 103 653 195 704 3.30e-80 274
Msa1084990 AT3G06250.3 31.720 558 326 13 103 653 195 704 3.30e-80 274
Msa1084990 AT5G18960.2 30.935 556 336 14 103 653 216 728 6.48e-76 263
Msa1084990 AT5G18960.1 30.935 556 336 14 103 653 216 728 6.48e-76 263
Msa1084990 AT4G15090.1 26.923 598 395 11 82 653 28 609 1.36e-69 246
Msa1084990 AT4G15090.5 26.923 598 395 11 82 653 28 609 1.36e-69 246
Msa1084990 AT4G15090.3 26.923 598 395 11 82 653 28 609 1.36e-69 246
Msa1084990 AT4G15090.2 26.923 598 395 11 82 653 28 609 1.36e-69 246
Msa1084990 AT4G15090.4 26.923 598 395 11 82 653 28 609 1.36e-69 246
Msa1084990 AT2G27110.2 26.916 561 371 10 103 656 54 582 5.25e-68 242
Msa1084990 AT2G27110.1 26.916 561 371 10 103 656 54 582 5.25e-68 242
Msa1084990 AT1G10240.2 29.912 565 368 14 104 652 54 606 4.44e-65 230
Msa1084990 AT1G10240.1 29.912 565 368 14 104 652 54 606 4.44e-65 230
Msa1084990 AT2G27110.3 28.535 396 275 3 266 656 45 437 8.39e-65 230
Msa1084990 AT3G22170.2 26.387 595 380 14 84 653 57 618 2.16e-62 226
Msa1084990 AT3G22170.1 26.387 595 380 14 84 653 57 618 2.16e-62 226
Msa1084990 AT1G80010.1 29.082 588 378 15 103 665 100 673 8.65e-62 222
Msa1084990 AT1G76320.3 28.342 561 376 10 103 654 2 545 4.77e-61 219
Msa1084990 AT1G76320.2 28.342 561 376 10 103 654 2 545 6.30e-61 220
Msa1084990 AT1G52520.1 26.087 667 456 15 70 720 57 702 7.31e-61 219
Msa1084990 AT1G76320.1 28.342 561 376 10 103 654 2 545 7.96e-61 219
Msa1084990 AT1G76320.4 28.342 561 376 10 103 654 2 545 7.96e-61 219
Msa1084990 AT2G32250.5 25.766 555 358 9 103 650 43 550 1.47e-58 214
Msa1084990 AT2G32250.8 25.766 555 358 9 103 650 2 509 1.55e-58 213
Msa1084990 AT2G32250.7 25.766 555 358 9 103 650 2 509 1.91e-58 213
Msa1084990 AT2G32250.6 25.766 555 358 9 103 650 43 550 2.02e-58 214
Msa1084990 AT2G32250.1 25.766 555 358 9 103 650 43 550 2.02e-58 214
Msa1084990 AT2G32250.3 25.766 555 358 9 103 650 43 550 2.02e-58 214
Msa1084990 AT2G32250.2 25.766 555 358 9 103 650 43 550 2.13e-58 214
Msa1084990 AT2G32250.4 25.766 555 358 9 103 650 43 550 2.13e-58 214
Msa1084990 AT4G38170.1 27.621 391 270 6 270 653 15 399 1.35e-54 198
Msa1084990 AT5G28530.3 27.417 569 376 11 104 650 61 614 2.13e-54 200
Msa1084990 AT5G28530.2 27.417 569 376 11 104 650 61 614 2.13e-54 200
Msa1084990 AT5G28530.1 27.592 569 379 11 104 650 61 618 2.25e-54 200
Msa1084990 AT4G19990.5 25.429 641 414 15 98 716 22 620 3.02e-51 192
Msa1084990 AT4G19990.3 25.429 641 414 15 98 716 22 620 3.23e-51 192
Msa1084990 AT4G19990.4 25.429 641 414 15 98 716 22 620 3.23e-51 192
Msa1084990 AT4G19990.7 25.429 641 414 15 98 716 36 634 3.49e-51 192
Msa1084990 AT4G19990.6 25.429 641 414 15 98 716 22 620 3.91e-51 192
Msa1084990 AT4G19990.2 25.429 641 414 15 98 716 22 620 3.91e-51 192
Msa1084990 AT4G19990.1 24.917 602 390 13 136 716 3 563 3.11e-48 182
Msa1084990 AT5G28530.5 24.910 558 341 13 104 650 61 551 2.02e-35 143
Msa1084990 AT5G28530.4 25.090 558 344 13 104 650 61 555 2.15e-35 143

Find 181 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTTCTGGGTGCATCTTTA+AGG 0.099129 7_2:+85366683 Msa1084990:CDS
TTCTTAAACAAGAACATTTA+AGG 0.185418 7_2:-85366767 None:intergenic
GAACACCAATATTTAAATTT+AGG 0.214051 7_2:-85367271 None:intergenic
TGCATGCGTCTGCGCCTGCC+TGG 0.226208 7_2:-85367197 None:intergenic
TGTTGGTTTGCTAGAATGTC+TGG 0.244371 7_2:+85365283 Msa1084990:CDS
CCACGCCTAAATTTAAATAT+TGG 0.252621 7_2:+85367266 Msa1084990:CDS
AGCAATTGTGTTCAACGATA+TGG 0.256143 7_2:+85365168 Msa1084990:CDS
CTATGCTAAGGAGTCATTTC+TGG 0.258823 7_2:+85367506 Msa1084990:three_prime_UTR
TCATTTACCGTCTGCAAAAC+TGG 0.293721 7_2:-85367107 None:intergenic
TTAATGTGTTTGAAAGGTTA+TGG 0.298423 7_2:+85366259 Msa1084990:CDS
CTCTTCAGATTCGGTAGTTT+CGG 0.299776 7_2:-85365101 None:intergenic
GTGGACAACATCGTTTATTA+TGG 0.307273 7_2:-85367247 None:intergenic
GAATGTCAAGAAATGTCTTC+TGG 0.313620 7_2:+85366669 Msa1084990:CDS
CGAATGAACTACGAGATATT+TGG 0.314403 7_2:+85365877 Msa1084990:CDS
TGATGAGCTTCCCAATTGTT+TGG 0.327105 7_2:+85366848 Msa1084990:CDS
TGATATAATGAAGTTTGATA+TGG 0.333774 7_2:+85365192 Msa1084990:CDS
CATTACGTGGCTCACGCTTT+CGG 0.334984 7_2:-85365420 None:intergenic
TGCAGCATTTGTGGTGTAAT+AGG 0.340181 7_2:+85367224 Msa1084990:CDS
CATAGTCGGTGATGCGCATT+GGG 0.340887 7_2:-85366144 None:intergenic
TTAAGATAAGACATAACTTC+TGG 0.343770 7_2:-85366210 None:intergenic
CTGTACTATACCGGAATATC+TGG 0.344012 7_2:-85366958 None:intergenic
GCTGAGATGGTTCAGAAGTT+TGG 0.352261 7_2:+85366282 Msa1084990:CDS
TACGTAAGGGTCAAATGATT+AGG 0.360442 7_2:+85365314 Msa1084990:CDS
AAAAGCTTGAGAGATTGTTT+TGG 0.360617 7_2:+85365839 Msa1084990:CDS
TTGCCTACATGTTCTATTGT+TGG 0.362832 7_2:+85365266 Msa1084990:CDS
CAATCTGCAGCCAGATATTC+CGG 0.371485 7_2:+85366948 Msa1084990:CDS
TGGTGTTCAGTCACTTTCTC+CGG 0.372522 7_2:+85367286 Msa1084990:CDS
TTGGTTTAGAAGACAACAAT+TGG 0.378277 7_2:+85366301 Msa1084990:CDS
TAAATGTTCTTGTTTAAGAA+TGG 0.382832 7_2:+85366770 Msa1084990:CDS
CCTAGGCAAAACCAAACAAT+TGG 0.383097 7_2:-85366859 None:intergenic
GTAATAGGATGCTTGTGATT+TGG 0.390458 7_2:+85367751 Msa1084990:three_prime_UTR
GCATGCGTCTGCGCCTGCCT+GGG 0.395995 7_2:-85367196 None:intergenic
ACAAAAGGTTGTGGTTCAAT+TGG 0.406384 7_2:+85367164 Msa1084990:CDS
GTGAAACCCGCCTGCTGCAT+TGG 0.415584 7_2:-85365665 None:intergenic
ATTGTAGTGGTTCTGTGTAC+TGG 0.418264 7_2:+85366919 Msa1084990:CDS
GTCATTTCTGGAATGTTTCA+AGG 0.422882 7_2:+85367518 Msa1084990:three_prime_UTR
TGTGGGCCACTGCTCACATC+AGG 0.426152 7_2:+85366352 Msa1084990:CDS
AATGTTTCAAGGGTGGTCTT+AGG 0.426325 7_2:+85367529 Msa1084990:three_prime_UTR
ACGTAAGGGTCAAATGATTA+GGG 0.438100 7_2:+85365315 Msa1084990:CDS
ATAATAACTCACCGTCTGAC+TGG 0.438965 7_2:-85367357 None:intergenic
CCTGATATAGTTAGAACAAA+AGG 0.440652 7_2:+85367149 Msa1084990:CDS
TAATGTGTTTGAAAGGTTAT+GGG 0.443792 7_2:+85366260 Msa1084990:CDS
CAAGAACATTTAAGGTCAAT+CGG 0.446659 7_2:-85366759 None:intergenic
TGGCCATGGTACCATACATC+TGG 0.449552 7_2:-85365645 None:intergenic
CAACCATACATATGTCTCTT+CGG 0.455896 7_2:-85366025 None:intergenic
CGAAATACTGCGGTGATGGT+AGG 0.457326 7_2:+85366709 Msa1084990:CDS
CTCACGCTTTCGGTTCTCCC+TGG 0.457913 7_2:-85365410 None:intergenic
GTCAATCGGTTCTTCGCAAA+AGG 0.459105 7_2:-85366745 None:intergenic
ATTTGCCTCCTCTTCAGATT+CGG 0.459174 7_2:-85365110 None:intergenic
GCAATTGTGTTCAACGATAT+GGG 0.462867 7_2:+85365169 Msa1084990:CDS
ATGCAAACTTGCAGCATTTG+TGG 0.464177 7_2:+85367215 Msa1084990:CDS
TCTAGTAATGCAATCGTCTC+TGG 0.474124 7_2:+85365049 Msa1084990:CDS
TTCTAACTATATCAGGATCA+AGG 0.475647 7_2:-85367142 None:intergenic
CAGTCACTTTCTCCGGGGAA+TGG 0.477886 7_2:+85367293 Msa1084990:CDS
TATATTGTATTATAGGATGT+TGG 0.479289 7_2:+85367459 Msa1084990:intron
TCACTCATCTTTCTGTATGC+AGG 0.481214 7_2:-85365571 None:intergenic
TGAAACAAGATGTGGATGTA+AGG 0.482330 7_2:+85365441 Msa1084990:CDS
AGAGACATATGTATGGTTGT+TGG 0.487097 7_2:+85366029 Msa1084990:CDS
CAGATGTGCAAAGTTGTTGC+TGG 0.487488 7_2:+85366978 Msa1084990:CDS
AGAGCCTCAAACAAAAGATC+TGG 0.487748 7_2:-85364518 None:intergenic
ACATAGTCGGTGATGCGCAT+TGG 0.489812 7_2:-85366145 None:intergenic
TTGTTGGGTGGGACTTTGTG+TGG 0.489818 7_2:+85365541 Msa1084990:CDS
TGAAGGGTTTAGAGAGGATA+GGG 0.494161 7_2:+85365381 Msa1084990:CDS
ATAAGACCATTCCAGATGTA+TGG 0.497294 7_2:+85365634 Msa1084990:CDS
GATATAATGAAGTTTGATAT+GGG 0.498214 7_2:+85365193 Msa1084990:CDS
CCCGCCTGCTGCATTGGCCA+TGG 0.498998 7_2:-85365659 None:intergenic
TTGCCTTTGATGCAACCTAC+AGG 0.499410 7_2:+85365908 Msa1084990:CDS
GCAGGCGGGTTTCACAAGGT+TGG 0.500449 7_2:+85365673 Msa1084990:CDS
GGTGTTCAGTCACTTTCTCC+GGG 0.500522 7_2:+85367287 Msa1084990:CDS
CATGCGTCTGCGCCTGCCTG+GGG 0.501531 7_2:-85367195 None:intergenic
AATGTCAAGAAATGTCTTCT+GGG 0.501660 7_2:+85366670 Msa1084990:CDS
ACACCGGAGAAAATAACAAA+TGG 0.501771 7_2:-85365949 None:intergenic
GGTACCATGGCCAATGCAGC+AGG 0.502246 7_2:+85365655 Msa1084990:CDS
TTTCCTGTAGGTTGCATCAA+AGG 0.502863 7_2:-85365911 None:intergenic
TGATCATAACCATGAGTTGT+TGG 0.502949 7_2:+85365525 Msa1084990:CDS
CGTTTGTATGTTCATGTGAA+GGG 0.506489 7_2:+85365365 Msa1084990:CDS
AAGGATTTGTATAACCAAGT+TGG 0.513872 7_2:+85365706 Msa1084990:CDS
GATCATAACCATGAGTTGTT+GGG 0.514350 7_2:+85365526 Msa1084990:CDS
TAATAACTCACCGTCTGACT+GGG 0.525259 7_2:-85367356 None:intergenic
GTTGGTTTGCTAGAATGTCT+GGG 0.525952 7_2:+85365284 Msa1084990:CDS
TTCGGTAGTTTCGGCAGGCA+GGG 0.527195 7_2:-85365092 None:intergenic
ATTGAACGCAATAGAAAAGC+AGG 0.527313 7_2:+85365610 Msa1084990:CDS
TTTGCACATCTGTACTATAC+CGG 0.527550 7_2:-85366967 None:intergenic
CTTTGCGCTTGATTTACTCT+CGG 0.527629 7_2:-85364580 None:intergenic
ACGTTTGTATGTTCATGTGA+AGG 0.528222 7_2:+85365364 Msa1084990:CDS
GTTTCGAAATACTGCGGTGA+TGG 0.529413 7_2:+85366705 Msa1084990:CDS
GAAATACTGCGGTGATGGTA+GGG 0.530285 7_2:+85366710 Msa1084990:CDS
TAATAGCATTTCTCATTGCA+AGG 0.535165 7_2:-85366110 None:intergenic
CCATCGGTAATTACAGATAA+CGG 0.535350 7_2:-85366084 None:intergenic
ATTTCCTCTTCACCATTCCC+CGG 0.536043 7_2:-85367305 None:intergenic
CAAAATGTCCCATGTGGCTG+TGG 0.539256 7_2:-85366422 None:intergenic
AACTTCTGGAATGCCAATGT+TGG 0.540850 7_2:-85366196 None:intergenic
TTGTAGTGGTTCTGTGTACT+GGG 0.541523 7_2:+85366920 Msa1084990:CDS
CCACATCTTGTTTCATTACG+TGG 0.542170 7_2:-85365433 None:intergenic
TCGAGGTTAATGTGTTTGAA+AGG 0.542340 7_2:+85366253 Msa1084990:CDS
CGTAGACTGGTTTGTAACAC+AGG 0.543004 7_2:-85366552 None:intergenic
TCAGATTCGGTAGTTTCGGC+AGG 0.543494 7_2:-85365097 None:intergenic
AAACTTATTTCTGATGCAAG+TGG 0.544035 7_2:+85365742 Msa1084990:CDS
GTGTGTGACACAAACATAAG+TGG 0.545921 7_2:-85365802 None:intergenic
CCATGGCCAATGCAGCAGGC+GGG 0.549082 7_2:+85365659 Msa1084990:CDS
TAATACGACATTGCAGCGAA+TGG 0.549266 7_2:-85367577 None:intergenic
TAGACATTGTGTCGAAGCGT+TGG 0.549624 7_2:+85365482 Msa1084990:CDS
TCAATTGGTATCAGTACCCC+AGG 0.551710 7_2:+85367179 Msa1084990:CDS
TGAAAGGTTATGGGCTGAGA+TGG 0.552089 7_2:+85366269 Msa1084990:CDS
ACTTTGTTCAACAATTCCAC+AGG 0.555098 7_2:+85366469 Msa1084990:CDS
AGACCGAAGAGACATATGTA+TGG 0.558869 7_2:+85366022 Msa1084990:CDS
ACCATGGCCAATGCAGCAGG+CGG 0.562388 7_2:+85365658 Msa1084990:CDS
CACACAAGATTGAATGCAGC+GGG 0.562481 7_2:+85367482 Msa1084990:exon
TCATTTCTGGAATGTTTCAA+GGG 0.564420 7_2:+85367519 Msa1084990:three_prime_UTR
TTTCTGGAATGTTTCAAGGG+TGG 0.564566 7_2:+85367522 Msa1084990:three_prime_UTR
CTAGGCAAAACCAAACAATT+GGG 0.566282 7_2:-85366858 None:intergenic
GTGGGCCACTGCTCACATCA+GGG 0.566297 7_2:+85366353 Msa1084990:CDS
AAATGATTAGGGATCGTCAA+GGG 0.566337 7_2:+85365326 Msa1084990:CDS
CCGTTATCTGTAATTACCGA+TGG 0.566643 7_2:+85366084 Msa1084990:CDS
TGTTAGTGTGTTGCAATGTA+CGG 0.569919 7_2:+85367783 Msa1084990:three_prime_UTR
GAAGGAGAACATGGTTCAGA+AGG 0.570317 7_2:+85365142 Msa1084990:CDS
AAGTCCCACCCAACAACTCA+TGG 0.571261 7_2:-85365534 None:intergenic
TTGGTATCAGTACCCCAGGC+AGG 0.572307 7_2:+85367183 Msa1084990:CDS
AACCACTACAATATTTCTCA+CGG 0.574719 7_2:-85366908 None:intergenic
AAACAATCGTCTGGTTATGG+TGG 0.579159 7_2:-85365975 None:intergenic
GTGAAGGGTTTAGAGAGGAT+AGG 0.583533 7_2:+85365380 Msa1084990:CDS
TCTCATTGCAAGGTCTCCAT+CGG 0.585177 7_2:-85366100 None:intergenic
ATTTGTATAACCAAGTTGGT+AGG 0.585819 7_2:+85365710 Msa1084990:CDS
TTCATGTGAAGGGTTTAGAG+AGG 0.585894 7_2:+85365375 Msa1084990:CDS
TGCAGCAGGCGGGTTTCACA+AGG 0.587440 7_2:+85365669 Msa1084990:CDS
CGAAACTACCGAATCTGAAG+AGG 0.587554 7_2:+85365102 Msa1084990:CDS
TGTTTAAGAATGGAGTCACT+CGG 0.588048 7_2:+85366780 Msa1084990:CDS
TCTCTCAATAGAGCGTAGAC+TGG 0.590244 7_2:-85366565 None:intergenic
ATAGTTAGAACAAAAGGTTG+TGG 0.592906 7_2:+85367155 Msa1084990:CDS
ATGGTACCATACATCTGGAA+TGG 0.593554 7_2:-85365640 None:intergenic
AGTTATGGATCGTAGATCAG+AGG 0.597822 7_2:+85364831 Msa1084990:exon
ATCCGTGAGAAATATTGTAG+TGG 0.598126 7_2:+85366906 Msa1084990:CDS
AACTACCGAATCTGAAGAGG+AGG 0.598164 7_2:+85365105 Msa1084990:CDS
CGAAACGCATCGTCCAACAT+TGG 0.602477 7_2:+85366183 Msa1084990:CDS
CCAATATTTAAATTTAGGCG+TGG 0.603258 7_2:-85367266 None:intergenic
CTGGTTATGGTGGTTAACAC+CGG 0.604355 7_2:-85365965 None:intergenic
CGCATCACCGACTATGTGCG+TGG 0.607731 7_2:+85366151 Msa1084990:CDS
AATGCAGCGGGACTATGCTA+AGG 0.609893 7_2:+85367494 Msa1084990:exon
AAACCAACAATAGAACATGT+AGG 0.609954 7_2:-85365269 None:intergenic
TGAGGCGCTCCACAGCCACA+TGG 0.610207 7_2:+85366413 Msa1084990:CDS
ACTGCGGTGATGGTAGGGAA+TGG 0.612310 7_2:+85366715 Msa1084990:CDS
TTCTCCGGGGAATGGTGAAG+AGG 0.618817 7_2:+85367301 Msa1084990:CDS
GAGGCGCTCCACAGCCACAT+GGG 0.620737 7_2:+85366414 Msa1084990:CDS
GAAGGGTTTAGAGAGGATAG+GGG 0.622672 7_2:+85365382 Msa1084990:CDS
ATCAAGCGCAAAGATTTCCA+AGG 0.623234 7_2:+85364590 Msa1084990:five_prime_UTR
ATTCCAGATGTATGGTACCA+TGG 0.623771 7_2:+85365642 Msa1084990:CDS
AAGGGTTTAGAGAGGATAGG+GGG 0.623970 7_2:+85365383 Msa1084990:CDS
AGATGTGCAAAGTTGTTGCT+GGG 0.628468 7_2:+85366979 Msa1084990:CDS
TCGAACGACCTCTCGTTGTG+AGG 0.629998 7_2:+85366395 Msa1084990:CDS
GCATACAGAAAGATGAGTGA+AGG 0.633024 7_2:+85365574 Msa1084990:CDS
TGTAGGTTGCATCAAAGGCA+AGG 0.633101 7_2:-85365906 None:intergenic
AGCAGCAAAGTTGTTGACGA+AGG 0.633585 7_2:+85366590 Msa1084990:CDS
TGTCTCACTGAGTCTAGTAG+TGG 0.634231 7_2:-85367674 None:intergenic
GAAAATAAGTTAGACACCTG+TGG 0.639120 7_2:-85366485 None:intergenic
CTACAACTTCCCCAGTCAGA+CGG 0.639517 7_2:+85367346 Msa1084990:CDS
TTTGTGTGGATGATGTTGGA+AGG 0.640334 7_2:+85365221 Msa1084990:CDS
CATAACCATGAGTTGTTGGG+TGG 0.647455 7_2:+85365529 Msa1084990:CDS
GTTATGGATCGTAGATCAGA+GGG 0.651862 7_2:+85364832 Msa1084990:exon
TGTGTGACACAAACATAAGT+GGG 0.652228 7_2:-85365801 None:intergenic
ACAAGTGCCACGCACATAGT+CGG 0.652480 7_2:-85366158 None:intergenic
TTTAAGGTTTCGAAATACTG+CGG 0.652628 7_2:+85366699 Msa1084990:CDS
TATTTCTGATGCAAGTGGTG+CGG 0.653017 7_2:+85365747 Msa1084990:CDS
TGGGCCACTGCTCACATCAG+GGG 0.653776 7_2:+85366354 Msa1084990:CDS
ACTTCCCCTGATGTGAGCAG+TGG 0.655038 7_2:-85366358 None:intergenic
GTGGAGCGCCTCACAACGAG+AGG 0.655392 7_2:-85366403 None:intergenic
CAATTCTTAAGTGCTATGAA+AGG 0.655915 7_2:+85366054 Msa1084990:CDS
TGTAGTAATATGTCAAGTGG+TGG 0.659670 7_2:+85365025 Msa1084990:CDS
TTTGCGAATTTCGACCACCT+AGG 0.664866 7_2:-85366876 None:intergenic
AATGATTAGGGATCGTCAAG+GGG 0.667751 7_2:+85365327 Msa1084990:CDS
ATAACCATGAGTTGTTGGGT+GGG 0.671128 7_2:+85365530 Msa1084990:CDS
GCACACAAGATTGAATGCAG+CGG 0.681885 7_2:+85367481 Msa1084990:exon
CAAATGATTAGGGATCGTCA+AGG 0.687921 7_2:+85365325 Msa1084990:CDS
AATAACTCACCGTCTGACTG+GGG 0.696426 7_2:-85367355 None:intergenic
GATTGTAGTAATATGTCAAG+TGG 0.697996 7_2:+85365022 Msa1084990:CDS
GTGTTCAGTCACTTTCTCCG+GGG 0.698911 7_2:+85367288 Msa1084990:CDS
CCACGTAATGAAACAAGATG+TGG 0.700849 7_2:+85365433 Msa1084990:CDS
TTTCAAACACATTAACCTCG+AGG 0.704126 7_2:-85366251 None:intergenic
ACAGATATGATATGATCACA+TGG 0.719879 7_2:-85366807 None:intergenic
ATGGATCGTAGATCAGAGGG+TGG 0.722528 7_2:+85364835 Msa1084990:CDS
ATAGTCGGTGATGCGCATTG+GGG 0.752339 7_2:-85366143 None:intergenic
AATGCACAAAATGTCCCATG+TGG 0.793030 7_2:-85366428 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGTTTTTAAAATAATGA+AGG + chr7_2:85364731-85364750 Msa1084990:intron 10.0%
!! AATGAATTATATTGTATTAT+AGG + chr7_2:85367452-85367471 Msa1084990:intron 10.0%
!! AACAATAAATAAATAAGCTT+CGG - chr7_2:85364718-85364737 None:intergenic 15.0%
!!! GATTTAATTTGTATGTAAAA+TGG + chr7_2:85364951-85364970 Msa1084990:intron 15.0%
!! AATGATTAATCTAAACAGAT+CGG - chr7_2:85364657-85364676 None:intergenic 20.0%
!! TGATATAATGAAGTTTGATA+TGG + chr7_2:85365192-85365211 Msa1084990:CDS 20.0%
!! GATATAATGAAGTTTGATAT+GGG + chr7_2:85365193-85365212 Msa1084990:CDS 20.0%
!!! AAGCTTTTTATTACTATCAA+GGG - chr7_2:85365827-85365846 None:intergenic 20.0%
!! TTATCTTAAAAAATGCATGT+TGG + chr7_2:85366224-85366243 Msa1084990:CDS 20.0%
!! TATCTTAAAAAATGCATGTT+GGG + chr7_2:85366225-85366244 Msa1084990:CDS 20.0%
!! TTCTTAAACAAGAACATTTA+AGG - chr7_2:85366770-85366789 None:intergenic 20.0%
!!! TAAATGTTCTTGTTTAAGAA+TGG + chr7_2:85366770-85366789 Msa1084990:CDS 20.0%
!!! TGTTCTTTAATTTTAATCTC+TGG - chr7_2:85367064-85367083 None:intergenic 20.0%
!! GAACACCAATATTTAAATTT+AGG - chr7_2:85367274-85367293 None:intergenic 20.0%
!! TATATTGTATTATAGGATGT+TGG + chr7_2:85367459-85367478 Msa1084990:intron 20.0%
!!! TATGTATCATGTTTTGTAAT+AGG + chr7_2:85367736-85367755 Msa1084990:three_prime_UTR 20.0%
! GGAAGAATAAAATGCAATAT+GGG - chr7_2:85364620-85364639 None:intergenic 25.0%
! AGGAAGAATAAAATGCAATA+TGG - chr7_2:85364621-85364640 None:intergenic 25.0%
! ATGATTAATCTAAACAGATC+GGG - chr7_2:85364656-85364675 None:intergenic 25.0%
! GATGAAATTTGATGTTCTTT+AGG + chr7_2:85364803-85364822 Msa1084990:intron 25.0%
! CAATTCAAATCATGTCAAAT+TGG - chr7_2:85364932-85364951 None:intergenic 25.0%
!! AAGGTATGATTTTGTTAGTT+TGG + chr7_2:85365240-85365259 Msa1084990:CDS 25.0%
!! CAAGCTTTTTATTACTATCA+AGG - chr7_2:85365828-85365847 None:intergenic 25.0%
!!! GTTATATTTGTTTTTCCTGT+AGG - chr7_2:85365926-85365945 None:intergenic 25.0%
! TTAAGATAAGACATAACTTC+TGG - chr7_2:85366213-85366232 None:intergenic 25.0%
! ATCTTAAAAAATGCATGTTG+GGG + chr7_2:85366226-85366245 Msa1084990:CDS 25.0%
! TTAATGTGTTTGAAAGGTTA+TGG + chr7_2:85366259-85366278 Msa1084990:CDS 25.0%
! TAATGTGTTTGAAAGGTTAT+GGG + chr7_2:85366260-85366279 Msa1084990:CDS 25.0%
! TGTATGAGAAAAAAAACATG+TGG + chr7_2:85366334-85366353 Msa1084990:CDS 25.0%
! GTATGAGAAAAAAAACATGT+GGG + chr7_2:85366335-85366354 Msa1084990:CDS 25.0%
!! TCTGATTTTCAATCAAACTA+TGG + chr7_2:85366525-85366544 Msa1084990:CDS 25.0%
!! AAAACCAGATCTTTTGTTTG+AGG + chr7_2:85364514-85364533 Msa1084990:five_prime_UTR 30.0%
!!! GTTCTTTAGGTTTTGAGTTA+TGG + chr7_2:85364816-85364835 Msa1084990:intron 30.0%
GATTGTAGTAATATGTCAAG+TGG + chr7_2:85365022-85365041 Msa1084990:CDS 30.0%
AAACCAACAATAGAACATGT+AGG - chr7_2:85365272-85365291 None:intergenic 30.0%
AAGGATTTGTATAACCAAGT+TGG + chr7_2:85365706-85365725 Msa1084990:CDS 30.0%
!! ATTTGTATAACCAAGTTGGT+AGG + chr7_2:85365710-85365729 Msa1084990:CDS 30.0%
!! AAACTTATTTCTGATGCAAG+TGG + chr7_2:85365742-85365761 Msa1084990:CDS 30.0%
! AAAAGCTTGAGAGATTGTTT+TGG + chr7_2:85365839-85365858 Msa1084990:CDS 30.0%
!!! TGTCCATTTGTTATTTTCTC+CGG + chr7_2:85365946-85365965 Msa1084990:CDS 30.0%
CAATTCTTAAGTGCTATGAA+AGG + chr7_2:85366054-85366073 Msa1084990:CDS 30.0%
TAATAGCATTTCTCATTGCA+AGG - chr7_2:85366113-85366132 None:intergenic 30.0%
TCTTAAAAAATGCATGTTGG+GGG + chr7_2:85366227-85366246 Msa1084990:CDS 30.0%
TTGGTTTAGAAGACAACAAT+TGG + chr7_2:85366301-85366320 Msa1084990:CDS 30.0%
!! TCTAACTTATTTTCGCTTCA+GGG + chr7_2:85366494-85366513 Msa1084990:CDS 30.0%
! AGGAAATCTTTTTCTTGTTC+AGG + chr7_2:85366610-85366629 Msa1084990:CDS 30.0%
! AATCTTTTTCTTGTTCAGGT+CGG + chr7_2:85366614-85366633 Msa1084990:CDS 30.0%
AATGTCAAGAAATGTCTTCT+GGG + chr7_2:85366670-85366689 Msa1084990:CDS 30.0%
! TTTAAGGTTTCGAAATACTG+CGG + chr7_2:85366699-85366718 Msa1084990:CDS 30.0%
! CAAGAACATTTAAGGTCAAT+CGG - chr7_2:85366762-85366781 None:intergenic 30.0%
ACAGATATGATATGATCACA+TGG - chr7_2:85366810-85366829 None:intergenic 30.0%
AACCACTACAATATTTCTCA+CGG - chr7_2:85366911-85366930 None:intergenic 30.0%
TTCTAACTATATCAGGATCA+AGG - chr7_2:85367145-85367164 None:intergenic 30.0%
! CCTTTTGTTCTAACTATATC+AGG - chr7_2:85367152-85367171 None:intergenic 30.0%
CCTGATATAGTTAGAACAAA+AGG + chr7_2:85367149-85367168 Msa1084990:CDS 30.0%
ATAGTTAGAACAAAAGGTTG+TGG + chr7_2:85367155-85367174 Msa1084990:CDS 30.0%
CCAATATTTAAATTTAGGCG+TGG - chr7_2:85367269-85367288 None:intergenic 30.0%
CCACGCCTAAATTTAAATAT+TGG + chr7_2:85367266-85367285 Msa1084990:CDS 30.0%
!! TCATTTCTGGAATGTTTCAA+GGG + chr7_2:85367519-85367538 Msa1084990:three_prime_UTR 30.0%
AATGCAATATGGGATTACCT+TGG - chr7_2:85364610-85364629 None:intergenic 35.0%
!! AGATCGGGTTGATTTATTAC+AGG - chr7_2:85364641-85364660 None:intergenic 35.0%
TCAACAGATTTCAGAGTAGT+TGG - chr7_2:85364688-85364707 None:intergenic 35.0%
!!! AATCAGTTGTTTTTGGATGC+AGG + chr7_2:85364859-85364878 Msa1084990:CDS 35.0%
ATCATGTCAAATTGGAAAGC+CGG - chr7_2:85364924-85364943 None:intergenic 35.0%
! TACAGCTTGCATACTTTTAC+AGG + chr7_2:85364982-85365001 Msa1084990:intron 35.0%
TGTAGTAATATGTCAAGTGG+TGG + chr7_2:85365025-85365044 Msa1084990:CDS 35.0%
AGCAATTGTGTTCAACGATA+TGG + chr7_2:85365168-85365187 Msa1084990:CDS 35.0%
GCAATTGTGTTCAACGATAT+GGG + chr7_2:85365169-85365188 Msa1084990:CDS 35.0%
! TGATATGGGAAACTTTTGTG+TGG + chr7_2:85365207-85365226 Msa1084990:CDS 35.0%
! AACTTTTGTGTGGATGATGT+TGG + chr7_2:85365217-85365236 Msa1084990:CDS 35.0%
TTGCCTACATGTTCTATTGT+TGG + chr7_2:85365266-85365285 Msa1084990:CDS 35.0%
TACGTAAGGGTCAAATGATT+AGG + chr7_2:85365314-85365333 Msa1084990:CDS 35.0%
ACGTAAGGGTCAAATGATTA+GGG + chr7_2:85365315-85365334 Msa1084990:CDS 35.0%
AAATGATTAGGGATCGTCAA+GGG + chr7_2:85365326-85365345 Msa1084990:CDS 35.0%
ACGTTTGTATGTTCATGTGA+AGG + chr7_2:85365364-85365383 Msa1084990:CDS 35.0%
CGTTTGTATGTTCATGTGAA+GGG + chr7_2:85365365-85365384 Msa1084990:CDS 35.0%
TGAAACAAGATGTGGATGTA+AGG + chr7_2:85365441-85365460 Msa1084990:CDS 35.0%
TGATCATAACCATGAGTTGT+TGG + chr7_2:85365525-85365544 Msa1084990:CDS 35.0%
GATCATAACCATGAGTTGTT+GGG + chr7_2:85365526-85365545 Msa1084990:CDS 35.0%
ATTGAACGCAATAGAAAAGC+AGG + chr7_2:85365610-85365629 Msa1084990:CDS 35.0%
ATAAGACCATTCCAGATGTA+TGG + chr7_2:85365634-85365653 Msa1084990:CDS 35.0%
CAAGGTTGGATTTGCAAAAA+AGG + chr7_2:85365687-85365706 Msa1084990:CDS 35.0%
TGTGTGACACAAACATAAGT+GGG - chr7_2:85365804-85365823 None:intergenic 35.0%
!!! AGAGATTGTTTTGGAGTGAT+GGG + chr7_2:85365848-85365867 Msa1084990:CDS 35.0%
CGAATGAACTACGAGATATT+TGG + chr7_2:85365877-85365896 Msa1084990:CDS 35.0%
ACACCGGAGAAAATAACAAA+TGG - chr7_2:85365952-85365971 None:intergenic 35.0%
CAAAAACAATCGTCTGGTTA+TGG - chr7_2:85365981-85366000 None:intergenic 35.0%
! CATAACCAGACGATTGTTTT+TGG + chr7_2:85365979-85365998 Msa1084990:CDS 35.0%
CAACCATACATATGTCTCTT+CGG - chr7_2:85366028-85366047 None:intergenic 35.0%
AGAGACATATGTATGGTTGT+TGG + chr7_2:85366029-85366048 Msa1084990:CDS 35.0%
CCATCGGTAATTACAGATAA+CGG - chr7_2:85366087-85366106 None:intergenic 35.0%
TTTCAAACACATTAACCTCG+AGG - chr7_2:85366254-85366273 None:intergenic 35.0%
TCGAGGTTAATGTGTTTGAA+AGG + chr7_2:85366253-85366272 Msa1084990:CDS 35.0%
ACTTTGTTCAACAATTCCAC+AGG + chr7_2:85366469-85366488 Msa1084990:CDS 35.0%
GAAAATAAGTTAGACACCTG+TGG - chr7_2:85366488-85366507 None:intergenic 35.0%
!! GTCTAACTTATTTTCGCTTC+AGG + chr7_2:85366493-85366512 Msa1084990:CDS 35.0%
GAATGTCAAGAAATGTCTTC+TGG + chr7_2:85366669-85366688 Msa1084990:CDS 35.0%
TGTTTAAGAATGGAGTCACT+CGG + chr7_2:85366780-85366799 Msa1084990:CDS 35.0%
CTAGGCAAAACCAAACAATT+GGG - chr7_2:85366861-85366880 None:intergenic 35.0%
ATCCGTGAGAAATATTGTAG+TGG + chr7_2:85366906-85366925 Msa1084990:CDS 35.0%
TTTGCACATCTGTACTATAC+CGG - chr7_2:85366970-85366989 None:intergenic 35.0%
! ATTATCTCCAGTTTTGCAGA+CGG + chr7_2:85367100-85367119 Msa1084990:CDS 35.0%
ACAAAAGGTTGTGGTTCAAT+TGG + chr7_2:85367164-85367183 Msa1084990:CDS 35.0%
GTGGACAACATCGTTTATTA+TGG - chr7_2:85367250-85367269 None:intergenic 35.0%
!! GTCATTTCTGGAATGTTTCA+AGG + chr7_2:85367518-85367537 Msa1084990:three_prime_UTR 35.0%
GTAATAGGATGCTTGTGATT+TGG + chr7_2:85367751-85367770 Msa1084990:three_prime_UTR 35.0%
TGTTAGTGTGTTGCAATGTA+CGG + chr7_2:85367783-85367802 Msa1084990:three_prime_UTR 35.0%
AGAGCCTCAAACAAAAGATC+TGG - chr7_2:85364521-85364540 None:intergenic 40.0%
!! TCTTTTGTTTGAGGCTCTTG+TGG + chr7_2:85364523-85364542 Msa1084990:five_prime_UTR 40.0%
!! CTTTTGTTTGAGGCTCTTGT+GGG + chr7_2:85364524-85364543 Msa1084990:five_prime_UTR 40.0%
CTTTGCGCTTGATTTACTCT+CGG - chr7_2:85364583-85364602 None:intergenic 40.0%
ATCAAGCGCAAAGATTTCCA+AGG + chr7_2:85364590-85364609 Msa1084990:five_prime_UTR 40.0%
AGTTATGGATCGTAGATCAG+AGG + chr7_2:85364831-85364850 Msa1084990:exon 40.0%
GTTATGGATCGTAGATCAGA+GGG + chr7_2:85364832-85364851 Msa1084990:exon 40.0%
!! GGGTGGAAATCAGTTGTTTT+TGG + chr7_2:85364852-85364871 Msa1084990:CDS 40.0%
!!! TTGTTTTTGGATGCAGGTCT+GGG + chr7_2:85364865-85364884 Msa1084990:CDS 40.0%
GCATCTAGTACCATTGAATC+CGG + chr7_2:85364902-85364921 Msa1084990:intron 40.0%
AATTGGAAAGCCGGATTCAA+TGG - chr7_2:85364915-85364934 None:intergenic 40.0%
! CATACTTTTACAGGAGACGA+TGG + chr7_2:85364991-85365010 Msa1084990:intron 40.0%
TCTAGTAATGCAATCGTCTC+TGG + chr7_2:85365049-85365068 Msa1084990:CDS 40.0%
! CTCTTCAGATTCGGTAGTTT+CGG - chr7_2:85365104-85365123 None:intergenic 40.0%
ATTTGCCTCCTCTTCAGATT+CGG - chr7_2:85365113-85365132 None:intergenic 40.0%
! GAGGCAAATTCTTTTGACGA+AGG + chr7_2:85365124-85365143 Msa1084990:CDS 40.0%
! TCTTTTGACGAAGGAGAACA+TGG + chr7_2:85365133-85365152 Msa1084990:CDS 40.0%
TTTGTGTGGATGATGTTGGA+AGG + chr7_2:85365221-85365240 Msa1084990:CDS 40.0%
!! TGTTGGTTTGCTAGAATGTC+TGG + chr7_2:85365283-85365302 Msa1084990:CDS 40.0%
!! GTTGGTTTGCTAGAATGTCT+GGG + chr7_2:85365284-85365303 Msa1084990:CDS 40.0%
! TCTGGGTTTTCTGTACGTAA+GGG + chr7_2:85365301-85365320 Msa1084990:CDS 40.0%
CAAATGATTAGGGATCGTCA+AGG + chr7_2:85365325-85365344 Msa1084990:CDS 40.0%
AATGATTAGGGATCGTCAAG+GGG + chr7_2:85365327-85365346 Msa1084990:CDS 40.0%
TTCATGTGAAGGGTTTAGAG+AGG + chr7_2:85365375-85365394 Msa1084990:CDS 40.0%
TGAAGGGTTTAGAGAGGATA+GGG + chr7_2:85365381-85365400 Msa1084990:CDS 40.0%
! CCACATCTTGTTTCATTACG+TGG - chr7_2:85365436-85365455 None:intergenic 40.0%
CCACGTAATGAAACAAGATG+TGG + chr7_2:85365433-85365452 Msa1084990:CDS 40.0%
ATAACCATGAGTTGTTGGGT+GGG + chr7_2:85365530-85365549 Msa1084990:CDS 40.0%
TCACTCATCTTTCTGTATGC+AGG - chr7_2:85365574-85365593 None:intergenic 40.0%
GCATACAGAAAGATGAGTGA+AGG + chr7_2:85365574-85365593 Msa1084990:CDS 40.0%
ATGGTACCATACATCTGGAA+TGG - chr7_2:85365643-85365662 None:intergenic 40.0%
ATTCCAGATGTATGGTACCA+TGG + chr7_2:85365642-85365661 Msa1084990:CDS 40.0%
! TTTTACGTTGCCTACCAACT+TGG - chr7_2:85365723-85365742 None:intergenic 40.0%
! TATTTCTGATGCAAGTGGTG+CGG + chr7_2:85365747-85365766 Msa1084990:CDS 40.0%
GTGTGTGACACAAACATAAG+TGG - chr7_2:85365805-85365824 None:intergenic 40.0%
!!! GAGAGATTGTTTTGGAGTGA+TGG + chr7_2:85365847-85365866 Msa1084990:CDS 40.0%
!!! GAGATTGTTTTGGAGTGATG+GGG + chr7_2:85365849-85365868 Msa1084990:CDS 40.0%
TTTCCTGTAGGTTGCATCAA+AGG - chr7_2:85365914-85365933 None:intergenic 40.0%
AAACAATCGTCTGGTTATGG+TGG - chr7_2:85365978-85365997 None:intergenic 40.0%
CACTACCAAAAACAATCGTC+TGG - chr7_2:85365987-85366006 None:intergenic 40.0%
!!! CAGACGATTGTTTTTGGTAG+TGG + chr7_2:85365985-85366004 Msa1084990:CDS 40.0%
AGACCGAAGAGACATATGTA+TGG + chr7_2:85366022-85366041 Msa1084990:CDS 40.0%
CCGTTATCTGTAATTACCGA+TGG + chr7_2:85366084-85366103 Msa1084990:CDS 40.0%
!! AACTTCTGGAATGCCAATGT+TGG - chr7_2:85366199-85366218 None:intergenic 40.0%
!!! ATCAGGGGAAGTTTTTTTGC+TGG + chr7_2:85366369-85366388 Msa1084990:CDS 40.0%
AATGCACAAAATGTCCCATG+TGG - chr7_2:85366431-85366450 None:intergenic 40.0%
TGATGAGCTTCCCAATTGTT+TGG + chr7_2:85366848-85366867 Msa1084990:CDS 40.0%
CCTAGGCAAAACCAAACAAT+TGG - chr7_2:85366862-85366881 None:intergenic 40.0%
!!! CCAATTGTTTGGTTTTGCCT+AGG + chr7_2:85366859-85366878 Msa1084990:CDS 40.0%
!!! ATTGTTTGGTTTTGCCTAGG+TGG + chr7_2:85366862-85366881 Msa1084990:CDS 40.0%
! ATTGTAGTGGTTCTGTGTAC+TGG + chr7_2:85366919-85366938 Msa1084990:CDS 40.0%
! TTGTAGTGGTTCTGTGTACT+GGG + chr7_2:85366920-85366939 Msa1084990:CDS 40.0%
CTGTACTATACCGGAATATC+TGG - chr7_2:85366961-85366980 None:intergenic 40.0%
AGATGTGCAAAGTTGTTGCT+GGG + chr7_2:85366979-85366998 Msa1084990:CDS 40.0%
TCATTTACCGTCTGCAAAAC+TGG - chr7_2:85367110-85367129 None:intergenic 40.0%
! AGTTTTGCAGACGGTAAATG+AGG + chr7_2:85367109-85367128 Msa1084990:CDS 40.0%
ATGCAAACTTGCAGCATTTG+TGG + chr7_2:85367215-85367234 Msa1084990:CDS 40.0%
TGCAGCATTTGTGGTGTAAT+AGG + chr7_2:85367224-85367243 Msa1084990:CDS 40.0%
TAATAACTCACCGTCTGACT+GGG - chr7_2:85367359-85367378 None:intergenic 40.0%
ATAATAACTCACCGTCTGAC+TGG - chr7_2:85367360-85367379 None:intergenic 40.0%
CTATGCTAAGGAGTCATTTC+TGG + chr7_2:85367506-85367525 Msa1084990:three_prime_UTR 40.0%
!! TTTCTGGAATGTTTCAAGGG+TGG + chr7_2:85367522-85367541 Msa1084990:three_prime_UTR 40.0%
AATGTTTCAAGGGTGGTCTT+AGG + chr7_2:85367529-85367548 Msa1084990:three_prime_UTR 40.0%
TAATACGACATTGCAGCGAA+TGG - chr7_2:85367580-85367599 None:intergenic 40.0%
!!! GTTGTTTTTGGATGCAGGTC+TGG + chr7_2:85364864-85364883 Msa1084990:CDS 45.0%
CGAAACTACCGAATCTGAAG+AGG + chr7_2:85365102-85365121 Msa1084990:CDS 45.0%
AACTACCGAATCTGAAGAGG+AGG + chr7_2:85365105-85365124 Msa1084990:CDS 45.0%
GAAGGAGAACATGGTTCAGA+AGG + chr7_2:85365142-85365161 Msa1084990:CDS 45.0%
! GTCTGGGTTTTCTGTACGTA+AGG + chr7_2:85365300-85365319 Msa1084990:CDS 45.0%
GTGAAGGGTTTAGAGAGGAT+AGG + chr7_2:85365380-85365399 Msa1084990:CDS 45.0%
GAAGGGTTTAGAGAGGATAG+GGG + chr7_2:85365382-85365401 Msa1084990:CDS 45.0%
AAGGGTTTAGAGAGGATAGG+GGG + chr7_2:85365383-85365402 Msa1084990:CDS 45.0%
TAGACATTGTGTCGAAGCGT+TGG + chr7_2:85365482-85365501 Msa1084990:CDS 45.0%
CATAACCATGAGTTGTTGGG+TGG + chr7_2:85365529-85365548 Msa1084990:CDS 45.0%
TGTAGGTTGCATCAAAGGCA+AGG - chr7_2:85365909-85365928 None:intergenic 45.0%
TTGCCTTTGATGCAACCTAC+AGG + chr7_2:85365908-85365927 Msa1084990:CDS 45.0%
CTGGTTATGGTGGTTAACAC+CGG - chr7_2:85365968-85365987 None:intergenic 45.0%
TCTCATTGCAAGGTCTCCAT+CGG - chr7_2:85366103-85366122 None:intergenic 45.0%
! TGAAAGGTTATGGGCTGAGA+TGG + chr7_2:85366269-85366288 Msa1084990:CDS 45.0%
GCTGAGATGGTTCAGAAGTT+TGG + chr7_2:85366282-85366301 Msa1084990:CDS 45.0%
!! CGTAGACTGGTTTGTAACAC+AGG - chr7_2:85366555-85366574 None:intergenic 45.0%
TCTCTCAATAGAGCGTAGAC+TGG - chr7_2:85366568-85366587 None:intergenic 45.0%
AGCAGCAAAGTTGTTGACGA+AGG + chr7_2:85366590-85366609 Msa1084990:CDS 45.0%
GTCTTCTGGGTGCATCTTTA+AGG + chr7_2:85366683-85366702 Msa1084990:CDS 45.0%
GTTTCGAAATACTGCGGTGA+TGG + chr7_2:85366705-85366724 Msa1084990:CDS 45.0%
! GAAATACTGCGGTGATGGTA+GGG + chr7_2:85366710-85366729 Msa1084990:CDS 45.0%
! GTCAATCGGTTCTTCGCAAA+AGG - chr7_2:85366748-85366767 None:intergenic 45.0%
TTTGCGAATTTCGACCACCT+AGG - chr7_2:85366879-85366898 None:intergenic 45.0%
CAATCTGCAGCCAGATATTC+CGG + chr7_2:85366948-85366967 Msa1084990:CDS 45.0%
CAGATGTGCAAAGTTGTTGC+TGG + chr7_2:85366978-85366997 Msa1084990:CDS 45.0%
TCAATTGGTATCAGTACCCC+AGG + chr7_2:85367179-85367198 Msa1084990:CDS 45.0%
! TGGTGTTCAGTCACTTTCTC+CGG + chr7_2:85367286-85367305 Msa1084990:CDS 45.0%
ATTTCCTCTTCACCATTCCC+CGG - chr7_2:85367308-85367327 None:intergenic 45.0%
AATAACTCACCGTCTGACTG+GGG - chr7_2:85367358-85367377 None:intergenic 45.0%
GCACACAAGATTGAATGCAG+CGG + chr7_2:85367481-85367500 Msa1084990:exon 45.0%
CACACAAGATTGAATGCAGC+GGG + chr7_2:85367482-85367501 Msa1084990:exon 45.0%
TGTCTCACTGAGTCTAGTAG+TGG - chr7_2:85367677-85367696 None:intergenic 45.0%
ATGGATCGTAGATCAGAGGG+TGG + chr7_2:85364835-85364854 Msa1084990:CDS 50.0%
! TCAGATTCGGTAGTTTCGGC+AGG - chr7_2:85365100-85365119 None:intergenic 50.0%
CATTACGTGGCTCACGCTTT+CGG - chr7_2:85365423-85365442 None:intergenic 50.0%
AAGTCCCACCCAACAACTCA+TGG - chr7_2:85365537-85365556 None:intergenic 50.0%
TTGTTGGGTGGGACTTTGTG+TGG + chr7_2:85365541-85365560 Msa1084990:CDS 50.0%
TGGCCATGGTACCATACATC+TGG - chr7_2:85365648-85365667 None:intergenic 50.0%
ATAGTCGGTGATGCGCATTG+GGG - chr7_2:85366146-85366165 None:intergenic 50.0%
CATAGTCGGTGATGCGCATT+GGG - chr7_2:85366147-85366166 None:intergenic 50.0%
ACATAGTCGGTGATGCGCAT+TGG - chr7_2:85366148-85366167 None:intergenic 50.0%
ACAAGTGCCACGCACATAGT+CGG - chr7_2:85366161-85366180 None:intergenic 50.0%
CGAAACGCATCGTCCAACAT+TGG + chr7_2:85366183-85366202 Msa1084990:CDS 50.0%
CAAAATGTCCCATGTGGCTG+TGG - chr7_2:85366425-85366444 None:intergenic 50.0%
! CGAAATACTGCGGTGATGGT+AGG + chr7_2:85366709-85366728 Msa1084990:CDS 50.0%
! GGTGTTCAGTCACTTTCTCC+GGG + chr7_2:85367287-85367306 Msa1084990:CDS 50.0%
! GTGTTCAGTCACTTTCTCCG+GGG + chr7_2:85367288-85367307 Msa1084990:CDS 50.0%
CTACAACTTCCCCAGTCAGA+CGG + chr7_2:85367346-85367365 Msa1084990:CDS 50.0%
AATGCAGCGGGACTATGCTA+AGG + chr7_2:85367494-85367513 Msa1084990:exon 50.0%
TTCGGTAGTTTCGGCAGGCA+GGG - chr7_2:85365095-85365114 None:intergenic 55.0%
ATTCGGTAGTTTCGGCAGGC+AGG - chr7_2:85365096-85365115 None:intergenic 55.0%
AGAGGATAGGGGGCTAACCA+GGG + chr7_2:85365393-85365412 Msa1084990:CDS 55.0%
ACTTCCCCTGATGTGAGCAG+TGG - chr7_2:85366361-85366380 None:intergenic 55.0%
TCGAACGACCTCTCGTTGTG+AGG + chr7_2:85366395-85366414 Msa1084990:CDS 55.0%
! ACTGCGGTGATGGTAGGGAA+TGG + chr7_2:85366715-85366734 Msa1084990:CDS 55.0%
TTGGTATCAGTACCCCAGGC+AGG + chr7_2:85367183-85367202 Msa1084990:CDS 55.0%
! CAGTCACTTTCTCCGGGGAA+TGG + chr7_2:85367293-85367312 Msa1084990:CDS 55.0%
TTCTCCGGGGAATGGTGAAG+AGG + chr7_2:85367301-85367320 Msa1084990:CDS 55.0%
GAGAGGATAGGGGGCTAACC+AGG + chr7_2:85365392-85365411 Msa1084990:CDS 60.0%
CTCACGCTTTCGGTTCTCCC+TGG - chr7_2:85365413-85365432 None:intergenic 60.0%
GGTACCATGGCCAATGCAGC+AGG + chr7_2:85365655-85365674 Msa1084990:CDS 60.0%
ACCATGGCCAATGCAGCAGG+CGG + chr7_2:85365658-85365677 Msa1084990:CDS 60.0%
GTGAAACCCGCCTGCTGCAT+TGG - chr7_2:85365668-85365687 None:intergenic 60.0%
! TGCAGCAGGCGGGTTTCACA+AGG + chr7_2:85365669-85365688 Msa1084990:CDS 60.0%
! GCAGGCGGGTTTCACAAGGT+TGG + chr7_2:85365673-85365692 Msa1084990:CDS 60.0%
! CGCATCACCGACTATGTGCG+TGG + chr7_2:85366151-85366170 Msa1084990:CDS 60.0%
ATGCATGTTGGGGGACCTCG+AGG + chr7_2:85366236-85366255 Msa1084990:CDS 60.0%
TGTGGGCCACTGCTCACATC+AGG + chr7_2:85366352-85366371 Msa1084990:CDS 60.0%
GTGGGCCACTGCTCACATCA+GGG + chr7_2:85366353-85366372 Msa1084990:CDS 60.0%
TGGGCCACTGCTCACATCAG+GGG + chr7_2:85366354-85366373 Msa1084990:CDS 60.0%
CCATGGCCAATGCAGCAGGC+GGG + chr7_2:85365659-85365678 Msa1084990:CDS 65.0%
! GTGGAGCGCCTCACAACGAG+AGG - chr7_2:85366406-85366425 None:intergenic 65.0%
! TGAGGCGCTCCACAGCCACA+TGG + chr7_2:85366413-85366432 Msa1084990:CDS 65.0%
! GAGGCGCTCCACAGCCACAT+GGG + chr7_2:85366414-85366433 Msa1084990:CDS 65.0%
! CCCGCCTGCTGCATTGGCCA+TGG - chr7_2:85365662-85365681 None:intergenic 70.0%
CATGCGTCTGCGCCTGCCTG+GGG - chr7_2:85367198-85367217 None:intergenic 70.0%
GCATGCGTCTGCGCCTGCCT+GGG - chr7_2:85367199-85367218 None:intergenic 70.0%
TGCATGCGTCTGCGCCTGCC+TGG - chr7_2:85367200-85367219 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 85364504 85367831 85364504 ID=Msa1084990;Name=Msa1084990
chr7_2 mRNA 85364504 85367831 85364504 ID=Msa1084990-mRNA-1;Parent=Msa1084990;Name=Msa1084990-mRNA-1;_AED=0.12;_eAED=0.00;_QI=118|1|0.75|1|0.66|0.5|4|337|815
chr7_2 exon 85364504 85364611 85364504 ID=Msa1084990-mRNA-1:exon:23029;Parent=Msa1084990-mRNA-1
chr7_2 exon 85364825 85364897 85364825 ID=Msa1084990-mRNA-1:exon:23030;Parent=Msa1084990-mRNA-1
chr7_2 exon 85365004 85367367 85365004 ID=Msa1084990-mRNA-1:exon:23031;Parent=Msa1084990-mRNA-1
chr7_2 exon 85367474 85367831 85367474 ID=Msa1084990-mRNA-1:exon:23032;Parent=Msa1084990-mRNA-1
chr7_2 five_prime_UTR 85364504 85364611 85364504 ID=Msa1084990-mRNA-1:five_prime_utr;Parent=Msa1084990-mRNA-1
chr7_2 five_prime_UTR 85364825 85364834 85364825 ID=Msa1084990-mRNA-1:five_prime_utr;Parent=Msa1084990-mRNA-1
chr7_2 CDS 85364835 85364897 85364835 ID=Msa1084990-mRNA-1:cds;Parent=Msa1084990-mRNA-1
chr7_2 CDS 85365004 85367367 85365004 ID=Msa1084990-mRNA-1:cds;Parent=Msa1084990-mRNA-1
chr7_2 CDS 85367474 85367494 85367474 ID=Msa1084990-mRNA-1:cds;Parent=Msa1084990-mRNA-1
chr7_2 three_prime_UTR 85367495 85367831 85367495 ID=Msa1084990-mRNA-1:three_prime_utr;Parent=Msa1084990-mRNA-1
Gene Sequence

>Msa1084990

ATGGATCGTAGATCAGAGGGTGGAAATCAGTTGTTTTTGGATGCAGGTCTGGGTATCACAACTGAGACGATGGAAGAAAGTGATTGTAGTAATATGTCAAGTGGTGGATCTAGTAATGCAATCGTCTCTGGTAGTTCAAACTCACAAGTATCCCTGCCTGCCGAAACTACCGAATCTGAAGAGGAGGCAAATTCTTTTGACGAAGGAGAACATGGTTCAGAAGGCGAAGCAATTGTGTTCAACGATATGGGTGATATAATGAAGTTTGATATGGGAAACTTTTGTGTGGATGATGTTGGAAGGTATGATTTTGTTAGTTTGGATGTTGCCTACATGTTCTATTGTTGGTTTGCTAGAATGTCTGGGTTTTCTGTACGTAAGGGTCAAATGATTAGGGATCGTCAAGGGGTAGTTTTGCAGCAAACGTTTGTATGTTCATGTGAAGGGTTTAGAGAGGATAGGGGGCTAACCAGGGAGAACCGAAAGCGTGAGCCACGTAATGAAACAAGATGTGGATGTAAGGCAAAATTTAGAGTGCACGTAGACATTGTGTCGAAGCGTTGGTATGTCACTATGTTTGAAATTGATCATAACCATGAGTTGTTGGGTGGGACTTTGTGTGGATTACTTCCTGCATACAGAAAGATGAGTGAAGGTGATATTGATGAGATTGAACGCAATAGAAAAGCAGGTATAAGACCATTCCAGATGTATGGTACCATGGCCAATGCAGCAGGCGGGTTTCACAAGGTTGGATTTGCAAAAAAGGATTTGTATAACCAAGTTGGTAGGCAACGTAAAAAACTTATTTCTGATGCAAGTGGTGCGGTAAAGTATCTTAGAGATCTGAACTTGAAAGACCCACTTATGTTTGTGTCACACACCCTTGATAGTAATAAAAAGCTTGAGAGATTGTTTTGGAGTGATGGGGAAAGTCGAATGAACTACGAGATATTTGGAGATGTCCTTGCCTTTGATGCAACCTACAGGAAAAACAAATATAACTGTCCATTTGTTATTTTCTCCGGTGTTAACCACCATAACCAGACGATTGTTTTTGGTAGTGGTATTGTAACACGAGAGACCGAAGAGACATATGTATGGTTGTTGGAGCAATTCTTAAGTGCTATGAAAGGCAAGCAGCCGTTATCTGTAATTACCGATGGAGACCTTGCAATGAGAAATGCTATTAAGAAAATATTCCCCAATGCGCATCACCGACTATGTGCGTGGCACTTGTTGCGAAACGCATCGTCCAACATTGGCATTCCAGAAGTTATGTCTTATCTTAAAAAATGCATGTTGGGGGACCTCGAGGTTAATGTGTTTGAAAGGTTATGGGCTGAGATGGTTCAGAAGTTTGGTTTAGAAGACAACAATTGGATCAATGAGATGTATGAGAAAAAAAACATGTGGGCCACTGCTCACATCAGGGGAAGTTTTTTTGCTGGTATTCGAACGACCTCTCGTTGTGAGGCGCTCCACAGCCACATGGGACATTTTGTGCATTCTCGAATAAGCATGACTGACTTTGTTCAACAATTCCACAGGTGTCTAACTTATTTTCGCTTCAGGGAAATTGAATCTGATTTTCAATCAAACTATGGTCAACCTGTGTTACAAACCAGTCTACGCTCTATTGAGAGATCAGCAGCAAAGTTGTTGACGAAGGAAATCTTTTTCTTGTTCAGGTCGGTACTAAAGAAAGCATTGCTTCTCAGAATAAATGAATGTCAAGAAATGTCTTCTGGGTGCATCTTTAAGGTTTCGAAATACTGCGGTGATGGTAGGGAATGGCATGTTTCCTTTTGCGAAGAACCGATTGACCTTAAATGTTCTTGTTTAAGAATGGAGTCACTCGGATTACCATGTGATCATATCATATCTGTGTTGTTGTATCTTGATTTTGATGAGCTTCCCAATTGTTTGGTTTTGCCTAGGTGGTCGAAATTCGCAAAAGATTTAATCCGTGAGAAATATTGTAGTGGTTCTGTGTACTGGGATTCGCAATCTGCAGCCAGATATTCCGGTATAGTACAGATGTGCAAAGTTGTTGCTGGGCTAGTTTACGAAGATCTTGATGAGTATAATCATTTTGTTGAAAGTTTAAGTGCTGAAATCCAGAGATTAAAATTAAAGAACAATGTTGAAGAACGCGAATTATCTCCAGTTTTGCAGACGGTAAATGAGGATGATGAACTCCTTGATCCTGATATAGTTAGAACAAAAGGTTGTGGTTCAATTGGTATCAGTACCCCAGGCAGGCGCAGACGCATGCAAACTTGCAGCATTTGTGGTGTAATAGGCCATAATAAACGATGTTGTCCACGCCTAAATTTAAATATTGGTGTTCAGTCACTTTCTCCGGGGAATGGTGAAGAGGAAATCGAAGAAGACGATGTCAACTACAACTTCCCCAGTCAGACGGATGTTGGCACACAAGATTGA
Protein sequence

>Msa1084990

MDRRSEGGNQLFLDAGLGITTETMEESDCSNMSSGGSSNAIVSGSSNSQVSLPAETTESEEEANSFDEGEHGSEGEAIVFNDMGDIMKFDMGNFCVDDVGRYDFVSLDVAYMFYCWFARMSGFSVRKGQMIRDRQGVVLQQTFVCSCEGFREDRGLTRENRKREPRNETRCGCKAKFRVHVDIVSKRWYVTMFEIDHNHELLGGTLCGLLPAYRKMSEGDIDEIERNRKAGIRPFQMYGTMANAAGGFHKVGFAKKDLYNQVGRQRKKLISDASGAVKYLRDLNLKDPLMFVSHTLDSNKKLERLFWSDGESRMNYEIFGDVLAFDATYRKNKYNCPFVIFSGVNHHNQTIVFGSGIVTRETEETYVWLLEQFLSAMKGKQPLSVITDGDLAMRNAIKKIFPNAHHRLCAWHLLRNASSNIGIPEVMSYLKKCMLGDLEVNVFERLWAEMVQKFGLEDNNWINEMYEKKNMWATAHIRGSFFAGIRTTSRCEALHSHMGHFVHSRISMTDFVQQFHRCLTYFRFREIESDFQSNYGQPVLQTSLRSIERSAAKLLTKEIFFLFRSVLKKALLLRINECQEMSSGCIFKVSKYCGDGREWHVSFCEEPIDLKCSCLRMESLGLPCDHIISVLLYLDFDELPNCLVLPRWSKFAKDLIREKYCSGSVYWDSQSAARYSGIVQMCKVVAGLVYEDLDEYNHFVESLSAEIQRLKLKNNVEERELSPVLQTVNEDDELLDPDIVRTKGCGSIGISTPGRRRRMQTCSICGVIGHNKRCCPRLNLNIGVQSLSPGNGEEEIEEDDVNYNFPSQTDVGTQD*