AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1087580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087580 MtrunA17_Chr1g0192741 98.742 159 2 0 1 159 1 159 3.89e-110 314
Msa1087580 MtrunA17_Chr4g0057021 41.121 107 63 0 6 112 13 119 7.79e-20 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087580 AT1G56420.1 77.703 148 27 2 1 142 1 148 1.03e-72 219
Msa1087580 AT1G12530.1 38.393 112 69 0 1 112 2 113 4.42e-19 82.0

Find 148 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTATTTCCACTTCTAAA+TGG 0.197156 7_3:+371127 Msa1087580:CDS
AAGCTTCAGTGAAACAAATT+TGG 0.204215 7_3:+371251 Msa1087580:CDS
AACAAACAGACCAATATTAT+TGG 0.244096 7_3:+372011 Msa1087580:three_prime_UTR
ATGTATGTCACATGAATTTA+AGG 0.250211 7_3:+372359 Msa1087580:three_prime_UTR
TCTGCTGTCGGCCTCCTTAT+CGG 0.250465 7_3:-371161 None:intergenic
TTCTTCGAAGGCACACATTC+AGG 0.271305 7_3:+372304 Msa1087580:three_prime_UTR
AGGCAAAATATGGAAGAATT+TGG 0.277793 7_3:-367010 None:intergenic
GGATATGAAAACGCAATAAT+TGG 0.282027 7_3:-366952 None:intergenic
ACAATCTTTGGTTTGCTTCA+TGG 0.285059 7_3:+371806 Msa1087580:three_prime_UTR
CTTCATGGTAAATATGCTTC+CGG 0.291844 7_3:+371821 Msa1087580:three_prime_UTR
ATTGCATTGATGACAATCTT+TGG 0.297658 7_3:+371794 Msa1087580:three_prime_UTR
TGAGCACACATGTATTATTA+TGG 0.308830 7_3:+372984 Msa1087580:three_prime_UTR
TTTCGCGAGAAGGCAAAATA+TGG 0.308901 7_3:-367020 None:intergenic
ACAAACAGACCAATATTATT+GGG 0.309963 7_3:+372012 Msa1087580:three_prime_UTR
TCAATTGATTGAGCAACATT+TGG 0.312130 7_3:+372662 Msa1087580:three_prime_UTR
TTTGAACATAATTATTGTTT+GGG 0.314079 7_3:+371660 Msa1087580:three_prime_UTR
AGAAAGCATCAAAATCAGTT+TGG 0.321915 7_3:+371017 Msa1087580:CDS
TTATGACACTTCACTTTCAA+TGG 0.327535 7_3:-372849 Msa1087590:CDS
CGCATCAAATAGCTCTCTTT+TGG 0.330709 7_3:-367791 None:intergenic
AATGACAAATTCTGTGTTAA+GGG 0.342757 7_3:+372265 Msa1087580:three_prime_UTR
TTTGCTCTCCCCAATAATAT+TGG 0.344387 7_3:-372021 None:intergenic
AAATGACAAATTCTGTGTTA+AGG 0.348423 7_3:+372264 Msa1087580:three_prime_UTR
AAATATATTGTTGAACTTGT+AGG 0.350165 7_3:+371433 Msa1087580:CDS
GAAAGCATCAAAATCAGTTT+GGG 0.368981 7_3:+371018 Msa1087580:CDS
CTGCTGTCGGCCTCCTTATC+GGG 0.370227 7_3:-371160 None:intergenic
AAGGCACACATTCAGGGTCT+TGG 0.371784 7_3:+372311 Msa1087580:three_prime_UTR
CAAGTCTTTGAAATTGATAA+AGG 0.372042 7_3:-371363 None:intergenic
ACGGTGACTGCTATTGCTTA+TGG 0.375941 7_3:+367057 Msa1087580:exon
ACGGCACAATTGATGCTCTT+AGG 0.378868 7_3:+367131 Msa1087580:CDS
TTGGTCTGTTTCTCAGCACC+AGG 0.378931 7_3:-367772 None:intergenic
CAATTGATTGAGCAACATTT+GGG 0.379679 7_3:+372663 Msa1087580:three_prime_UTR
ATTGCTTATGGCTTCTTCTT+CGG 0.385395 7_3:+367069 Msa1087580:exon
AATTATAACAACCCAACTTC+AGG 0.388515 7_3:-373036 Msa1087590:intron
CCATTTAGAAGTGGAAATAA+AGG 0.396205 7_3:-371127 None:intergenic
GCCGACAGCAGAAAAGAAAA+AGG 0.398061 7_3:+371172 Msa1087580:CDS
CAGCGACTCTAATACATCTT+CGG 0.400938 7_3:-367101 None:intergenic
ACCTACTCTAAGTGCGTGTT+TGG 0.414426 7_3:+372127 Msa1087580:three_prime_UTR
GGCATAATACACAGCTTTGA+TGG 0.416631 7_3:-371487 None:intergenic
AAAATCCATCCTTGATTAGC+TGG 0.422726 7_3:+371898 Msa1087580:three_prime_UTR
TGATGTGCCCCACACTCTAT+AGG 0.429285 7_3:-366788 None:intergenic
ACAGCTTCTCTTAATTTATG+TGG 0.431718 7_3:+372528 Msa1087580:intron
TTCATGGTAAATATGCTTCC+GGG 0.436336 7_3:+371822 Msa1087580:three_prime_UTR
TAGGTGAAGTTGAATTCAAA+TGG 0.442427 7_3:-372109 None:intergenic
GCAGCAATATCAGAAGGTTC+TGG 0.447110 7_3:+371333 Msa1087580:CDS
ATACAAGCACACAGTTTGAT+TGG 0.447333 7_3:-372616 Msa1087590:CDS
CAAACTCTTATTTATATGAA+AGG 0.450263 7_3:-371526 None:intergenic
ATCCGATGATGTCTTCCTCT+TGG 0.452740 7_3:-372886 Msa1087590:CDS
GTGGAAATAAAGGAGGTTCC+TGG 0.453242 7_3:-371117 None:intergenic
GAGTTCAACAAGTTTCTGTA+AGG 0.458707 7_3:+371392 Msa1087580:CDS
GAGGTTCCTGGCCACTCAAT+CGG 0.460623 7_3:-371105 None:intergenic
AGCGACTCTAATACATCTTC+GGG 0.462062 7_3:-367100 None:intergenic
ATAATTGGAGGTCGTATTGA+TGG 0.462824 7_3:-366937 None:intergenic
CTGTGACTTACTCAAGCTCT+TGG 0.467413 7_3:-367819 None:intergenic
TCTTCGAAGGCACACATTCA+GGG 0.469273 7_3:+372305 Msa1087580:three_prime_UTR
TTATGGAATACTATAATCAA+TGG 0.470104 7_3:+373001 Msa1087580:three_prime_UTR
GTAAGGGAAGTGATCACATC+TGG 0.474897 7_3:+371409 Msa1087580:CDS
TGAAAGCTTACCTCTATGCT+TGG 0.477472 7_3:-371986 None:intergenic
ATGTCTTCCTCTTGGAGTCA+AGG 0.477708 7_3:-372878 Msa1087590:CDS
TCGGCCTCCTTATCGGGTTG+TGG 0.478473 7_3:-371154 None:intergenic
TGCAAGTCGCCTGACATCCT+TGG 0.479408 7_3:+372076 Msa1087580:three_prime_UTR
CAATGTCATGGTTCATGCTA+GGG 0.482802 7_3:+371618 Msa1087580:three_prime_UTR
GGATCAGAGGACCTGGTGGC+GGG 0.484671 7_3:-371309 None:intergenic
AAAGATGGCTGAACAGAGTA+AGG 0.486628 7_3:+367738 Msa1087580:CDS
TTTGGTAAATCTTGAATTCA+CGG 0.487208 7_3:+372145 Msa1087580:three_prime_UTR
GACTATTCGATTTCGCGAGA+AGG 0.496360 7_3:-367030 None:intergenic
TGGAGAACCACAACCCGATA+AGG 0.500687 7_3:+371147 Msa1087580:CDS
AGGATCAGAGGACCTGGTGG+CGG 0.500929 7_3:-371310 None:intergenic
AGATCTATCAAACACACATC+TGG 0.501769 7_3:-366820 None:intergenic
GGTCTTGGATTGAATAAAAG+TGG 0.502506 7_3:+372326 Msa1087580:three_prime_UTR
TCAATTTCAAAGACTTGACC+AGG 0.505935 7_3:+371369 Msa1087580:CDS
GCTCAAACTCCAAGGATGTC+AGG 0.509547 7_3:-372085 None:intergenic
TTTAACCAATCTGGTCCACT+TGG 0.513737 7_3:+372791 Msa1087580:three_prime_UTR
TAATACACAGCTTTGATGGC+TGG 0.513965 7_3:-371483 None:intergenic
CAAGAGTACTACTATAAAGA+TGG 0.515439 7_3:+367723 Msa1087580:CDS
TCAATGTCATGGTTCATGCT+AGG 0.517405 7_3:+371617 Msa1087580:three_prime_UTR
TGGATATTGATTTGTATCGA+TGG 0.517555 7_3:-366990 None:intergenic
TGGGTGCCGTGTTAGTTTCG+AGG 0.518042 7_3:-366917 None:intergenic
GAACCTTCTGATATTGCTGC+AGG 0.521199 7_3:-371330 None:intergenic
CGATGGATATAGACCAATGT+TGG 0.523008 7_3:-366973 None:intergenic
ATCAAACTGTGTGCTTGTAT+TGG 0.523069 7_3:+372619 Msa1087580:three_prime_UTR
TCATTGAATTTGCGAAGGCT+AGG 0.523598 7_3:+371575 Msa1087580:three_prime_UTR
ATTTATATGAAAGGCATACA+AGG 0.528076 7_3:-371517 None:intergenic
CAGAAACTTGTTGAACTCCC+TGG 0.528464 7_3:-371387 None:intergenic
TGCACATATGCTTGATGAGT+AGG 0.528989 7_3:+371859 Msa1087580:three_prime_UTR
TGGTCTGTTTCTCAGCACCA+GGG 0.531608 7_3:-367771 None:intergenic
CTTCCACATTCACATTGATG+TGG 0.532084 7_3:-372229 None:intergenic
GGTCTTCTGATCCCGCCACC+AGG 0.538253 7_3:+371298 Msa1087580:CDS
AGACAACAATGGCCTGGGAA+AGG 0.538377 7_3:+371051 Msa1087580:CDS
TGATGAGGGAAGGAGGAAGG+AGG 0.538633 7_3:-366865 None:intergenic
AACATTTGGGCAAACTACAC+TGG 0.542754 7_3:+372676 Msa1087580:three_prime_UTR
AGTCGCCATCCAGCTAATCA+AGG 0.545300 7_3:-371907 None:intergenic
CACAACCAAGTGGACCAGAT+TGG 0.548380 7_3:-372796 Msa1087590:CDS
TATGAAAACGCAATAATTGG+AGG 0.553735 7_3:-366949 None:intergenic
GCTTGTATGCAACTTGCATG+TGG 0.558794 7_3:+372818 Msa1087580:three_prime_UTR
TGGTTAAAATATGAACTGCC+TGG 0.567031 7_3:-372776 Msa1087590:CDS
ATCTTTAGAAGAGACCACTT+TGG 0.570156 7_3:-372054 None:intergenic
TGCTTGGTCTTCAGATAGCA+TGG 0.570332 7_3:-371970 None:intergenic
TTGGGAAAATTCTAGAGTGT+AGG 0.570862 7_3:+371678 Msa1087580:three_prime_UTR
CACATTAATAACATGTTGCT+AGG 0.570999 7_3:-372752 Msa1087590:CDS
TAATTGGAGGTCGTATTGAT+GGG 0.571726 7_3:-366936 None:intergenic
TCCATCCTTGATTAGCTGGA+TGG 0.573541 7_3:+371902 Msa1087580:three_prime_UTR
TGCTGCAGGATCAGAGGACC+TGG 0.574759 7_3:-371316 None:intergenic
CAATTTCCTCGAAACTAACA+CGG 0.576374 7_3:+366911 Msa1087580:five_prime_UTR
TCTCACTTATCTCCTTTCCC+AGG 0.576762 7_3:-371063 None:intergenic
GGAAAATTCTAGAGTGTAGG+TGG 0.576870 7_3:+371681 Msa1087580:three_prime_UTR
GAACAAAGCGACTTCTTCGA+AGG 0.577525 7_3:+372292 Msa1087580:three_prime_UTR
TGTGGTTCTCCATTTAGAAG+TGG 0.580837 7_3:-371136 None:intergenic
AGTTCAACAAGTTTCTGTAA+GGG 0.581346 7_3:+371393 Msa1087580:CDS
TTCAGTGAAACAAATTTGGA+CGG 0.583723 7_3:+371255 Msa1087580:CDS
GCCATCCAGCTAATCAAGGA+TGG 0.589120 7_3:-371903 None:intergenic
TGATATTGCTGCAGGATCAG+AGG 0.591438 7_3:-371322 None:intergenic
ATGAAAGCCTTGACTCCAAG+AGG 0.593005 7_3:+372871 Msa1087580:three_prime_UTR
TTTAGAAGTGGAAATAAAGG+AGG 0.594824 7_3:-371124 None:intergenic
TGTCACATGAATTTAAGGAC+AGG 0.595514 7_3:+372364 Msa1087580:three_prime_UTR
TTTCATCATTGAATTTGCGA+AGG 0.596558 7_3:+371570 Msa1087580:three_prime_UTR
ATTAATAACATGTTGCTAGG+AGG 0.596689 7_3:-372749 Msa1087590:CDS
CAAATGGAGCTCAAACTCCA+AGG 0.600713 7_3:-372093 None:intergenic
GGATTATGAACTCAATGTCA+TGG 0.600830 7_3:+371606 Msa1087580:three_prime_UTR
AGTAAGGTTCTGAACACCCC+TGG 0.607738 7_3:+367754 Msa1087580:CDS
GTGCAGATGAAACTGCCACC+AGG 0.614656 7_3:+371277 Msa1087580:CDS
GGTCTGTTTCTCAGCACCAG+GGG 0.615244 7_3:-367770 None:intergenic
AAAGGCATACAAGGTGTCTG+AGG 0.617913 7_3:-371508 None:intergenic
GGTGGCGGGATCAGAAGACC+TGG 0.619059 7_3:-371295 None:intergenic
GCTCCACATCAATGTGAATG+TGG 0.623832 7_3:+372226 Msa1087580:three_prime_UTR
CTCCAAGAGGAAGACATCAT+CGG 0.624470 7_3:+372884 Msa1087580:three_prime_UTR
AAAAGAACCTATAGAGTGTG+GGG 0.626012 7_3:+366781 None:intergenic
GATCCTGCAGCAATATCAGA+AGG 0.627968 7_3:+371327 Msa1087580:CDS
GAATTCACGGTAACAAGCCA+CGG 0.628081 7_3:+372158 Msa1087580:three_prime_UTR
CTTCAGATAGCATGGCAAAG+AGG 0.633240 7_3:-371962 None:intergenic
TATCTGAAGACCAAGCATAG+AGG 0.633798 7_3:+371976 Msa1087580:three_prime_UTR
TGCATACAAGCACAACCAAG+TGG 0.636072 7_3:-372806 Msa1087590:CDS
CTTGTATGCAACTTGCATGT+GGG 0.636807 7_3:+372819 Msa1087580:three_prime_UTR
AATGTCATGGTTCATGCTAG+GGG 0.637434 7_3:+371619 Msa1087580:three_prime_UTR
CGAAATCGAATAGTCTTCGA+CGG 0.642676 7_3:+367038 Msa1087580:five_prime_UTR
TGCGAAGGCTAGGAGATGTG+AGG 0.646138 7_3:+371585 Msa1087580:three_prime_UTR
CAAACAGACCAATATTATTG+GGG 0.646193 7_3:+372013 Msa1087580:three_prime_UTR
AACATGTTATTAATGTGACC+AGG 0.650975 7_3:+372758 Msa1087580:three_prime_UTR
TCACGGTAACAAGCCACGGT+GGG 0.655246 7_3:+372162 Msa1087580:three_prime_UTR
TGCAGGATCAGAGGACCTGG+TGG 0.661839 7_3:-371313 None:intergenic
AGAACCACAACCCGATAAGG+AGG 0.663173 7_3:+371150 Msa1087580:CDS
ACCAAACACGCACTTAGAGT+AGG 0.665339 7_3:-372128 None:intergenic
CAATTTCAAAGACTTGACCA+GGG 0.668086 7_3:+371370 Msa1087580:CDS
TGTGGAGCTGAACACACAGT+TGG 0.671228 7_3:-372211 None:intergenic
GGCGGGATCAGAAGACCTGG+TGG 0.679171 7_3:-371292 None:intergenic
ACTGTGTGCTTGTATTGGTG+TGG 0.682297 7_3:+372624 Msa1087580:three_prime_UTR
TTCACGGTAACAAGCCACGG+TGG 0.685464 7_3:+372161 Msa1087580:three_prime_UTR
TTAGAGTCGCTGATGAACGA+CGG 0.717153 7_3:+367112 Msa1087580:CDS
GCATAGCTTCTGTCCCACCG+TGG 0.760738 7_3:-372175 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTTGTATATTATAAT+AGG + chr7_3:367238-367257 Msa1087580:intron 10.0%
!!! ATAAATAATTTACACATTTT+GGG - chr7_3:368413-368432 None:intergenic 10.0%
!!! ATTTTATACATGTATTATTA+GGG - chr7_3:368872-368891 None:intergenic 10.0%
!! AAAATTCAAAATAAAAGAAA+GGG - chr7_3:370086-370105 None:intergenic 10.0%
!! AAAAATTCAAAATAAAAGAA+AGG - chr7_3:370087-370106 None:intergenic 10.0%
!! GAAAAATAAAATTGGAAAAA+AGG - chr7_3:367201-367220 None:intergenic 15.0%
!! TAGAACTAGAAAAATAAAAT+TGG - chr7_3:367209-367228 None:intergenic 15.0%
!!! ATTTTGAATTTTGGTATAAT+TGG + chr7_3:367627-367646 Msa1087580:intron 15.0%
!!! GATTTGCTTATATTTATTAT+TGG + chr7_3:367841-367860 Msa1087580:intron 15.0%
!!! GATAAATAATTTACACATTT+TGG - chr7_3:368414-368433 None:intergenic 15.0%
!!! ACCAAATACAAATATTATTT+TGG - chr7_3:368835-368854 None:intergenic 15.0%
!!! GATTTTATACATGTATTATT+AGG - chr7_3:368873-368892 None:intergenic 15.0%
!! AAAATAGTAAAAGTTAGATT+GGG - chr7_3:369803-369822 None:intergenic 15.0%
!! TAAAATAGTAAAAGTTAGAT+TGG - chr7_3:369804-369823 None:intergenic 15.0%
!! AAATTCAAAATAAAAGAAAG+GGG - chr7_3:370085-370104 None:intergenic 15.0%
!!! AATTAAATGTCAATTTTTGT+AGG + chr7_3:370348-370367 Msa1087580:intron 15.0%
!!! ATTAAATGTCAATTTTTGTA+GGG + chr7_3:370349-370368 Msa1087580:intron 15.0%
!! CGAATGAATTATAATAAAAT+AGG + chr7_3:370626-370645 Msa1087580:intron 15.0%
!!! TTTTGAACATAATTATTGTT+TGG + chr7_3:371659-371678 Msa1087580:three_prime_UTR 15.0%
!! TTTGAACATAATTATTGTTT+GGG + chr7_3:371660-371679 Msa1087580:three_prime_UTR 15.0%
!! ATTAACCATTATTTACATTT+GGG - chr7_3:372465-372484 None:intergenic 15.0%
!! AATTAACCATTATTTACATT+TGG - chr7_3:372466-372485 None:intergenic 15.0%
!! AATAAAATTGGAAAAAAGGA+GGG - chr7_3:367197-367216 None:intergenic 20.0%
!! AAATAAAATTGGAAAAAAGG+AGG - chr7_3:367198-367217 None:intergenic 20.0%
!! TTGTAGATTCAAAAAATTGT+TGG + chr7_3:367327-367346 Msa1087580:intron 20.0%
!! ACAATAACACTATAATTGTA+GGG + chr7_3:367456-367475 Msa1087580:intron 20.0%
!!! GACTAAAAGTATATTTAAGA+GGG + chr7_3:367478-367497 Msa1087580:intron 20.0%
!!! ACTAAAAGTATATTTAAGAG+GGG + chr7_3:367479-367498 Msa1087580:intron 20.0%
!! ATACCAAAATTCAAAATCAA+TGG - chr7_3:367624-367643 None:intergenic 20.0%
!!! TTCACACTATACTTTTATAT+GGG - chr7_3:368341-368360 None:intergenic 20.0%
!! AAATAATTATAACCACTTGA+TGG - chr7_3:368450-368469 None:intergenic 20.0%
!! AAAAAATTTGAATGAAAGAG+AGG + chr7_3:368475-368494 Msa1087580:intron 20.0%
!! AAAAATTTGAATGAAAGAGA+GGG + chr7_3:368476-368495 Msa1087580:intron 20.0%
!! AAAGACAAACTAAAATCAAT+AGG - chr7_3:368710-368729 None:intergenic 20.0%
!! GCCAAAATAATATTTGTATT+TGG + chr7_3:368831-368850 Msa1087580:intron 20.0%
!!! TTTTTGCAGACTTTATAAAA+GGG - chr7_3:368966-368985 None:intergenic 20.0%
!!! TTTTTTGCAGACTTTATAAA+AGG - chr7_3:368967-368986 None:intergenic 20.0%
!!! TTTTTTGCATTTTCATTGTA+CGG - chr7_3:369138-369157 None:intergenic 20.0%
!! GCTGTATAAAAGTTAAAATT+GGG - chr7_3:369729-369748 None:intergenic 20.0%
!! AGCTGTATAAAAGTTAAAAT+TGG - chr7_3:369730-369749 None:intergenic 20.0%
!! TAAAACTATTTCATACAAAG+AGG - chr7_3:370137-370156 None:intergenic 20.0%
!!! CCAAGATTTTCTTAAAAATT+TGG - chr7_3:370416-370435 None:intergenic 20.0%
!!! CCAAATTTTTAAGAAAATCT+TGG + chr7_3:370413-370432 Msa1087580:intron 20.0%
!! TCTTTATTATAGACTGAAAT+AGG + chr7_3:370450-370469 Msa1087580:intron 20.0%
!!! TCAAATTATTTAGTTTTTGC+TGG + chr7_3:370932-370951 Msa1087580:intron 20.0%
!!! GATTTAATTTTAGACAACAA+TGG + chr7_3:371040-371059 Msa1087580:CDS 20.0%
!! AAATATATTGTTGAACTTGT+AGG + chr7_3:371433-371452 Msa1087580:CDS 20.0%
!!! CAAACTCTTATTTATATGAA+AGG - chr7_3:371529-371548 None:intergenic 20.0%
!! CAAATTCAATGATGAAAAAT+TGG - chr7_3:371567-371586 None:intergenic 20.0%
!! TGGAAAAAAAAGACTTTATA+TGG + chr7_3:372548-372567 Msa1087580:three_prime_UTR 20.0%
!! TTATGGAATACTATAATCAA+TGG + chr7_3:373001-373020 Msa1087580:three_prime_UTR 20.0%
!!! AAACCCTAATTTTTTGATGA+GGG - chr7_3:366882-366901 None:intergenic 25.0%
!!! AAAACCCTAATTTTTTGATG+AGG - chr7_3:366883-366902 None:intergenic 25.0%
! AAAAAACGTTATAATTGCAC+AGG - chr7_3:367282-367301 None:intergenic 25.0%
!!! AAATATGCTTTTTTGACATG+TGG - chr7_3:367392-367411 None:intergenic 25.0%
! TTTGTTCAAATTCACAGATT+GGG - chr7_3:367424-367443 None:intergenic 25.0%
!! TTTTGTTCAAATTCACAGAT+TGG - chr7_3:367425-367444 None:intergenic 25.0%
! CACAATAACACTATAATTGT+AGG + chr7_3:367455-367474 Msa1087580:intron 25.0%
!! GGACTAAAAGTATATTTAAG+AGG + chr7_3:367477-367496 Msa1087580:intron 25.0%
!!! CTTCCATTGATTTTGAATTT+TGG + chr7_3:367618-367637 Msa1087580:intron 25.0%
!!! AGACTTTTTTGTTTTAGTGA+AGG - chr7_3:368288-368307 None:intergenic 25.0%
! AAACAAAAAAGTCTCATACT+TGG + chr7_3:368294-368313 Msa1087580:intron 25.0%
! AACAAAAAAGTCTCATACTT+GGG + chr7_3:368295-368314 Msa1087580:intron 25.0%
!! TCACACTATACTTTTATATG+GGG - chr7_3:368340-368359 None:intergenic 25.0%
!! GTTCACACTATACTTTTATA+TGG - chr7_3:368342-368361 None:intergenic 25.0%
! ATGAAAATATTATTGATGGG+AGG - chr7_3:368768-368787 None:intergenic 25.0%
! GGGATGAAAATATTATTGAT+GGG - chr7_3:368771-368790 None:intergenic 25.0%
!! ATTTTCAGCAAGATGATTAA+GGG - chr7_3:368792-368811 None:intergenic 25.0%
!! AATATTTGTATTTGGTTCCT+TGG + chr7_3:368839-368858 Msa1087580:intron 25.0%
!! AACATATTTTGCACATGAAT+TGG + chr7_3:369011-369030 Msa1087580:intron 25.0%
!! ACATTACAAATGTTTTCGTT+GGG - chr7_3:369049-369068 None:intergenic 25.0%
! GAAAACATTTGTAATGTGAA+TGG + chr7_3:369052-369071 Msa1087580:intron 25.0%
! ATAAATATACACAACTGATG+CGG + chr7_3:369089-369108 Msa1087580:intron 25.0%
!! CACATTACAAATGTTTTCAT+TGG - chr7_3:369222-369241 None:intergenic 25.0%
!!! ACTATTACTTTTCCGTTTTT+TGG - chr7_3:369551-369570 None:intergenic 25.0%
!! CTTTAAGAAGTGTATATACA+AGG - chr7_3:370030-370049 None:intergenic 25.0%
! CTTGTATATACACTTCTTAA+AGG + chr7_3:370028-370047 Msa1087580:intron 25.0%
! TTTCATACAAAGAGGTTTAA+TGG - chr7_3:370129-370148 None:intergenic 25.0%
! GACTGGAATATAGTTTAATT+AGG - chr7_3:370209-370228 None:intergenic 25.0%
!! TCTTGGTAATTATACAGATA+CGG + chr7_3:370566-370585 Msa1087580:intron 25.0%
!! TAGACTTACTACATGTATTT+TGG + chr7_3:370673-370692 Msa1087580:intron 25.0%
!! AGACTTACTACATGTATTTT+GGG + chr7_3:370674-370693 Msa1087580:intron 25.0%
!!! CTTGTTTTTTTGTAATCACA+TGG - chr7_3:370756-370775 None:intergenic 25.0%
! AGGCATTAACAAAAAAAAAG+TGG - chr7_3:370812-370831 None:intergenic 25.0%
!!! CAAGTCTTTGAAATTGATAA+AGG - chr7_3:371366-371385 None:intergenic 25.0%
!! ATTTATATGAAAGGCATACA+AGG - chr7_3:371520-371539 None:intergenic 25.0%
! AACAAACAGACCAATATTAT+TGG + chr7_3:372011-372030 Msa1087580:three_prime_UTR 25.0%
! ACAAACAGACCAATATTATT+GGG + chr7_3:372012-372031 Msa1087580:three_prime_UTR 25.0%
! TTTGGTAAATCTTGAATTCA+CGG + chr7_3:372145-372164 Msa1087580:three_prime_UTR 25.0%
! AAATGACAAATTCTGTGTTA+AGG + chr7_3:372264-372283 Msa1087580:three_prime_UTR 25.0%
! AATGACAAATTCTGTGTTAA+GGG + chr7_3:372265-372284 Msa1087580:three_prime_UTR 25.0%
! ATGTATGTCACATGAATTTA+AGG + chr7_3:372359-372378 Msa1087580:three_prime_UTR 25.0%
! AAAAAAGACTTTATATGGCA+CGG + chr7_3:372553-372572 Msa1087580:three_prime_UTR 25.0%
!! TTGTGTTGAATTCATTTTCT+GGG + chr7_3:372717-372736 Msa1087580:three_prime_UTR 25.0%
!!! AGTTCATATTTTAACCAATC+TGG + chr7_3:372782-372801 Msa1087580:three_prime_UTR 25.0%
CTTCCCTCATCAAAAAATTA+GGG + chr7_3:366876-366895 Msa1087580:five_prime_UTR 30.0%
TATGAAAACGCAATAATTGG+AGG - chr7_3:366952-366971 None:intergenic 30.0%
GGATATGAAAACGCAATAAT+TGG - chr7_3:366955-366974 None:intergenic 30.0%
!! TGGATATTGATTTGTATCGA+TGG - chr7_3:366993-367012 None:intergenic 30.0%
AGGCAAAATATGGAAGAATT+TGG - chr7_3:367013-367032 None:intergenic 30.0%
! ACATGTGTCGTGATTTTATT+GGG - chr7_3:367369-367388 None:intergenic 30.0%
AAGTATATTTAAGAGGGGTT+TGG + chr7_3:367484-367503 Msa1087580:intron 30.0%
!! TATTGTGATAAGTTTTGTGC+TGG + chr7_3:367678-367697 Msa1087580:intron 30.0%
!! CAAGAGTACTACTATAAAGA+TGG + chr7_3:367723-367742 Msa1087580:CDS 30.0%
!! TGTTTAGTTTGGCATTGTAT+AGG + chr7_3:367959-367978 Msa1087580:intron 30.0%
TTTCATACGATGTGATTGAA+TGG - chr7_3:368079-368098 None:intergenic 30.0%
AATCACAACTTTCTAACTTG+AGG + chr7_3:368132-368151 Msa1087580:intron 30.0%
CATAGAGAACATTTCTACTA+CGG - chr7_3:368542-368561 None:intergenic 30.0%
GATCAAACATGGAAAATTAG+TGG - chr7_3:368566-368585 None:intergenic 30.0%
TAGATGATTTCTTGGTTGAT+CGG + chr7_3:368608-368627 Msa1087580:intron 30.0%
GGGGATGAAAATATTATTGA+TGG - chr7_3:368772-368791 None:intergenic 30.0%
! TTTTCAGCAAGATGATTAAG+GGG - chr7_3:368791-368810 None:intergenic 30.0%
! GATTTTCAGCAAGATGATTA+AGG - chr7_3:368793-368812 None:intergenic 30.0%
ATAGGCGCTCAATATTATTA+GGG - chr7_3:368942-368961 None:intergenic 30.0%
TTCATGTGCAAAATATGTTG+CGG - chr7_3:369010-369029 None:intergenic 30.0%
! CATTACAAATGTTTTCGTTG+GGG - chr7_3:369048-369067 None:intergenic 30.0%
! CACATTACAAATGTTTTCGT+TGG - chr7_3:369050-369069 None:intergenic 30.0%
! TACATGTTTTGCACATGAAT+TGG + chr7_3:369183-369202 Msa1087580:intron 30.0%
TAGTGAAATTTATGCAAGAG+TGG - chr7_3:369372-369391 None:intergenic 30.0%
! TTTTCAACCCAATAATCTGA+GGG - chr7_3:369477-369496 None:intergenic 30.0%
! GTATTGGATTGGATACATAT+CGG - chr7_3:369576-369595 None:intergenic 30.0%
! TCCAATAAGTATGCTTGTTT+TGG + chr7_3:369617-369636 Msa1087580:intron 30.0%
ACCAAAACAAGCATACTTAT+TGG - chr7_3:369621-369640 None:intergenic 30.0%
!! GCTTTATTTAAGACGTATCA+GGG - chr7_3:369648-369667 None:intergenic 30.0%
!! AGCTTTATTTAAGACGTATC+AGG - chr7_3:369649-369668 None:intergenic 30.0%
! TTCACTCTATTTTCCATTTG+CGG + chr7_3:369951-369970 Msa1087580:intron 30.0%
!! CAACTTTTCAAGCATTCTTT+AGG - chr7_3:370058-370077 None:intergenic 30.0%
CAAATCAAATCCTGTGAAAT+AGG + chr7_3:370177-370196 Msa1087580:intron 30.0%
TCATGATGATAGCAATAACT+TGG - chr7_3:370281-370300 None:intergenic 30.0%
CCACATGCAAAACTAATATA+AGG - chr7_3:370496-370515 None:intergenic 30.0%
!!! CCTTATATTAGTTTTGCATG+TGG + chr7_3:370493-370512 Msa1087580:intron 30.0%
CTTATACTACTATACTAGAC+AGG + chr7_3:370704-370723 Msa1087580:intron 30.0%
TGTGAAGCTAAAATCTAATC+AGG - chr7_3:370908-370927 None:intergenic 30.0%
!!! TTTAGTTTTTGCTGGAATTC+TGG + chr7_3:370940-370959 Msa1087580:intron 30.0%
!! AGAAAGCATCAAAATCAGTT+TGG + chr7_3:371017-371036 Msa1087580:CDS 30.0%
!! GAAAGCATCAAAATCAGTTT+GGG + chr7_3:371018-371037 Msa1087580:CDS 30.0%
TTTAGAAGTGGAAATAAAGG+AGG - chr7_3:371127-371146 None:intergenic 30.0%
CCATTTAGAAGTGGAAATAA+AGG - chr7_3:371130-371149 None:intergenic 30.0%
! CCTTTATTTCCACTTCTAAA+TGG + chr7_3:371127-371146 Msa1087580:CDS 30.0%
AGCAGAAAAGAAAAAGGTAA+AGG + chr7_3:371178-371197 Msa1087580:CDS 30.0%
!!! ACTGAAGCTTCTTTTTTTGA+TGG - chr7_3:371241-371260 None:intergenic 30.0%
AAGCTTCAGTGAAACAAATT+TGG + chr7_3:371251-371270 Msa1087580:CDS 30.0%
TTCAGTGAAACAAATTTGGA+CGG + chr7_3:371255-371274 Msa1087580:CDS 30.0%
AGTTCAACAAGTTTCTGTAA+GGG + chr7_3:371393-371412 Msa1087580:CDS 30.0%
TTTCATCATTGAATTTGCGA+AGG + chr7_3:371570-371589 Msa1087580:three_prime_UTR 30.0%
! TTAAAGAGACGTCAGTTTTA+AGG - chr7_3:371775-371794 None:intergenic 30.0%
! ATTGCATTGATGACAATCTT+TGG + chr7_3:371794-371813 Msa1087580:three_prime_UTR 30.0%
!!! AGAGGTTTTAGAATAAGTTG+TGG - chr7_3:371947-371966 None:intergenic 30.0%
CAAACAGACCAATATTATTG+GGG + chr7_3:372013-372032 Msa1087580:three_prime_UTR 30.0%
CAAAAATAAATGCTCCAAAG+TGG + chr7_3:372040-372059 Msa1087580:three_prime_UTR 30.0%
TAGGTGAAGTTGAATTCAAA+TGG - chr7_3:372112-372131 None:intergenic 30.0%
! ATCTTGATGATAGTGATATG+TGG - chr7_3:372424-372443 None:intergenic 30.0%
CATATCACTATCATCAAGAT+AGG + chr7_3:372424-372443 Msa1087580:intron 30.0%
TTACATTTGGGCTGTTAAAA+TGG - chr7_3:372453-372472 None:intergenic 30.0%
AACAGCCCAAATGTAAATAA+TGG + chr7_3:372457-372476 Msa1087580:intron 30.0%
ACAGCTTCTCTTAATTTATG+TGG + chr7_3:372528-372547 Msa1087580:intron 30.0%
TCAATTGATTGAGCAACATT+TGG + chr7_3:372662-372681 Msa1087580:three_prime_UTR 30.0%
CAATTGATTGAGCAACATTT+GGG + chr7_3:372663-372682 Msa1087580:three_prime_UTR 30.0%
! GTTGTGTTGAATTCATTTTC+TGG + chr7_3:372716-372735 Msa1087580:three_prime_UTR 30.0%
!!! TGAATTCATTTTCTGGGATA+TGG + chr7_3:372723-372742 Msa1087580:three_prime_UTR 30.0%
ATTAATAACATGTTGCTAGG+AGG - chr7_3:372752-372771 Msa1087590:CDS 30.0%
CACATTAATAACATGTTGCT+AGG - chr7_3:372755-372774 Msa1087590:CDS 30.0%
AACATGTTATTAATGTGACC+AGG + chr7_3:372758-372777 Msa1087580:three_prime_UTR 30.0%
TTATGACACTTCACTTTCAA+TGG - chr7_3:372852-372871 Msa1087590:CDS 30.0%
TGAGCACACATGTATTATTA+TGG + chr7_3:372984-373003 Msa1087580:three_prime_UTR 30.0%
! AAATTTTTGCTACCTGAAGT+TGG + chr7_3:373024-373043 Msa1087580:three_prime_UTR 30.0%
! AATTTTTGCTACCTGAAGTT+GGG + chr7_3:373025-373044 Msa1087580:three_prime_UTR 30.0%
AATTATAACAACCCAACTTC+AGG - chr7_3:373039-373058 Msa1087590:CDS 30.0%
AGATCTATCAAACACACATC+TGG - chr7_3:366823-366842 None:intergenic 35.0%
!!! AATTTTTTGATGAGGGAAGG+AGG - chr7_3:366875-366894 None:intergenic 35.0%
!!! CCTAATTTTTTGATGAGGGA+AGG - chr7_3:366878-366897 None:intergenic 35.0%
CCTTCCCTCATCAAAAAATT+AGG + chr7_3:366875-366894 Msa1087580:five_prime_UTR 35.0%
CAATTTCCTCGAAACTAACA+CGG + chr7_3:366911-366930 Msa1087580:five_prime_UTR 35.0%
! TAATTGGAGGTCGTATTGAT+GGG - chr7_3:366939-366958 None:intergenic 35.0%
ATAATTGGAGGTCGTATTGA+TGG - chr7_3:366940-366959 None:intergenic 35.0%
! TGCGTTTTCATATCCAACAT+TGG + chr7_3:366960-366979 Msa1087580:five_prime_UTR 35.0%
ATTGCTTATGGCTTCTTCTT+CGG + chr7_3:367069-367088 Msa1087580:exon 35.0%
! GACATGTGTCGTGATTTTAT+TGG - chr7_3:367370-367389 None:intergenic 35.0%
!!! TGTGCTGGTTTGTTTTTTGT+AGG + chr7_3:367693-367712 Msa1087580:intron 35.0%
CAAATGTTGATCCCTTTGTT+GGG + chr7_3:367866-367885 Msa1087580:intron 35.0%
ATTACAACTGTTCGTAGCAT+GGG - chr7_3:368238-368257 None:intergenic 35.0%
AATTACAACTGTTCGTAGCA+TGG - chr7_3:368239-368258 None:intergenic 35.0%
AAAAGTCTCATACTTGGGTT+TGG + chr7_3:368300-368319 Msa1087580:intron 35.0%
CCAAGAAATCATCTAGTTAG+AGG - chr7_3:368603-368622 None:intergenic 35.0%
CCTCTAACTAGATGATTTCT+TGG + chr7_3:368600-368619 Msa1087580:intron 35.0%
! AAAATCCGAAGAGTACATGT+GGG + chr7_3:368807-368826 Msa1087580:intron 35.0%
! TTGTATTTGGTTCCTTGGAT+TGG + chr7_3:368844-368863 Msa1087580:intron 35.0%
! ATTATTAGGGTACCAATCCA+AGG - chr7_3:368859-368878 None:intergenic 35.0%
AAGGAACCGTACAATACAAA+AGG - chr7_3:368910-368929 None:intergenic 35.0%
! TTTTGTATTGTACGGTTCCT+TGG + chr7_3:368909-368928 Msa1087580:intron 35.0%
CATAGGCGCTCAATATTATT+AGG - chr7_3:368943-368962 None:intergenic 35.0%
! CAGACTTTATAAAAGGGCAT+AGG - chr7_3:368960-368979 None:intergenic 35.0%
TCATGTGCAAAATATGTTGC+GGG - chr7_3:369009-369028 None:intergenic 35.0%
! AAATGTTTTCATTGGCACAG+TGG - chr7_3:369214-369233 None:intergenic 35.0%
TCTGATTTCCAAATAGATGC+AGG + chr7_3:369424-369443 Msa1087580:intron 35.0%
! CTTTTCAACCCAATAATCTG+AGG - chr7_3:369478-369497 None:intergenic 35.0%
ATTGACACGTGTATCAGTAT+TGG - chr7_3:369592-369611 None:intergenic 35.0%
CAATTTAGCAACCAAAGACA+TGG + chr7_3:369675-369694 Msa1087580:intron 35.0%
AAAATTGGGTGTGTCGTATT+CGG - chr7_3:369715-369734 None:intergenic 35.0%
TAGTTTAGCAACCAAAGACA+TGG + chr7_3:369756-369775 Msa1087580:intron 35.0%
AAGTTGAGAGGGTAAAAGTA+AGG - chr7_3:369833-369852 None:intergenic 35.0%
CTCTTTCTGTTGACATATCT+AGG + chr7_3:369988-370007 Msa1087580:intron 35.0%
TAGGATTTAGCCTATTTCAC+AGG - chr7_3:370190-370209 None:intergenic 35.0%
TGATGATAGCAATAACTTGG+TGG - chr7_3:370278-370297 None:intergenic 35.0%
CATAATTCCATGCACAAACA+CGG + chr7_3:370317-370336 Msa1087580:intron 35.0%
ATAATTCCATGCACAAACAC+GGG + chr7_3:370318-370337 Msa1087580:intron 35.0%
!! ATGTCACTTTCTTTGATCGA+GGG + chr7_3:370381-370400 Msa1087580:intron 35.0%
GCATTTAACAGATCCAAACA+AGG - chr7_3:370531-370550 None:intergenic 35.0%
CTGTTAAATGCCCTATAAAC+AGG + chr7_3:370540-370559 Msa1087580:intron 35.0%
!!! GTAGTGCGTCTTAGTTTTTT+GGG + chr7_3:370588-370607 Msa1087580:intron 35.0%
ACAGGTCTGAATTGTTAGTT+TGG + chr7_3:370722-370741 Msa1087580:intron 35.0%
TTTGTAATCACATGGCCAAT+GGG - chr7_3:370748-370767 None:intergenic 35.0%
! TTTTGTAATCACATGGCCAA+TGG - chr7_3:370749-370768 None:intergenic 35.0%
TTCGTACTAGATGCTTTATG+TGG + chr7_3:370844-370863 Msa1087580:intron 35.0%
TCGTACTAGATGCTTTATGT+GGG + chr7_3:370845-370864 Msa1087580:intron 35.0%
! AATTTTAGACAACAATGGCC+TGG + chr7_3:371045-371064 Msa1087580:CDS 35.0%
! ATTTTAGACAACAATGGCCT+GGG + chr7_3:371046-371065 Msa1087580:CDS 35.0%
! ACCTTTTTCTTTTCTGCTGT+CGG - chr7_3:371176-371195 None:intergenic 35.0%
TCAATTTCAAAGACTTGACC+AGG + chr7_3:371369-371388 Msa1087580:CDS 35.0%
CAATTTCAAAGACTTGACCA+GGG + chr7_3:371370-371389 Msa1087580:CDS 35.0%
GAGTTCAACAAGTTTCTGTA+AGG + chr7_3:371392-371411 Msa1087580:CDS 35.0%
GGATTATGAACTCAATGTCA+TGG + chr7_3:371606-371625 Msa1087580:three_prime_UTR 35.0%
!! TTGGGAAAATTCTAGAGTGT+AGG + chr7_3:371678-371697 Msa1087580:three_prime_UTR 35.0%
!! ACAATCTTTGGTTTGCTTCA+TGG + chr7_3:371806-371825 Msa1087580:three_prime_UTR 35.0%
CTTCATGGTAAATATGCTTC+CGG + chr7_3:371821-371840 Msa1087580:three_prime_UTR 35.0%
TTCATGGTAAATATGCTTCC+GGG + chr7_3:371822-371841 Msa1087580:three_prime_UTR 35.0%
! TGCAGATTTTTCTATTCACC+CGG - chr7_3:371843-371862 None:intergenic 35.0%
AAAATCCATCCTTGATTAGC+TGG + chr7_3:371898-371917 Msa1087580:three_prime_UTR 35.0%
!!! GGTTTTAGAATAAGTTGTGG+TGG - chr7_3:371944-371963 None:intergenic 35.0%
TTTGCTCTCCCCAATAATAT+TGG - chr7_3:372024-372043 None:intergenic 35.0%
! ATCTTTAGAAGAGACCACTT+TGG - chr7_3:372057-372076 None:intergenic 35.0%
GGTCTTGGATTGAATAAAAG+TGG + chr7_3:372326-372345 Msa1087580:three_prime_UTR 35.0%
TGTCACATGAATTTAAGGAC+AGG + chr7_3:372364-372383 Msa1087580:three_prime_UTR 35.0%
ATACAAGCACACAGTTTGAT+TGG - chr7_3:372619-372638 Msa1087590:CDS 35.0%
ATCAAACTGTGTGCTTGTAT+TGG + chr7_3:372619-372638 Msa1087580:three_prime_UTR 35.0%
TGGTTAAAATATGAACTGCC+TGG - chr7_3:372779-372798 Msa1087590:CDS 35.0%
CGATGGATATAGACCAATGT+TGG - chr7_3:366976-366995 None:intergenic 40.0%
TTTCGCGAGAAGGCAAAATA+TGG - chr7_3:367023-367042 None:intergenic 40.0%
CGAAATCGAATAGTCTTCGA+CGG + chr7_3:367038-367057 Msa1087580:five_prime_UTR 40.0%
AGCGACTCTAATACATCTTC+GGG - chr7_3:367103-367122 None:intergenic 40.0%
CAGCGACTCTAATACATCTT+CGG - chr7_3:367104-367123 None:intergenic 40.0%
AAGGAGGGTAGAAACTACAT+TGG - chr7_3:367182-367201 None:intergenic 40.0%
TGTTTGTGCTAGTGCTTCTT+AGG + chr7_3:367574-367593 Msa1087580:intron 40.0%
!!! GCTGGTTTGTTTTTTGTAGG+AGG + chr7_3:367696-367715 Msa1087580:intron 40.0%
AAAGATGGCTGAACAGAGTA+AGG + chr7_3:367738-367757 Msa1087580:CDS 40.0%
! CGCATCAAATAGCTCTCTTT+TGG - chr7_3:367794-367813 None:intergenic 40.0%
CCAACAAAGGGATCAACATT+TGG - chr7_3:367868-367887 None:intergenic 40.0%
CCAAATGTTGATCCCTTTGT+TGG + chr7_3:367865-367884 Msa1087580:intron 40.0%
!!! CTTTTCGAGTTCCCAACAAA+GGG - chr7_3:367880-367899 None:intergenic 40.0%
!!! ACTTTTCGAGTTCCCAACAA+AGG - chr7_3:367881-367900 None:intergenic 40.0%
CTATTTCGCGCTGTTTAGTT+TGG + chr7_3:367948-367967 Msa1087580:intron 40.0%
!! CACATTTTGGGAAGCAAGTT+GGG - chr7_3:368401-368420 None:intergenic 40.0%
!! ACACATTTTGGGAAGCAAGT+TGG - chr7_3:368402-368421 None:intergenic 40.0%
!! TTATAACCACTTGATGGTGC+AGG - chr7_3:368444-368463 None:intergenic 40.0%
ATGTCATGCAGGATCAAACA+TGG - chr7_3:368577-368596 None:intergenic 40.0%
GTTAGAGGAATATGTCATGC+AGG - chr7_3:368588-368607 None:intergenic 40.0%
TTTCTTGGTTGATCGGATCA+AGG + chr7_3:368615-368634 Msa1087580:intron 40.0%
TTCTGCACTACGTCATAGAA+TGG + chr7_3:368728-368747 Msa1087580:intron 40.0%
! GAAAATCCGAAGAGTACATG+TGG + chr7_3:368806-368825 Msa1087580:intron 40.0%
! AAATCCGAAGAGTACATGTG+GGG + chr7_3:368808-368827 Msa1087580:intron 40.0%
! CCTACGCCTTTTGTATTGTA+CGG + chr7_3:368901-368920 Msa1087580:intron 40.0%
TATTGTACGGTTCCTTGGAT+CGG + chr7_3:368914-368933 Msa1087580:intron 40.0%
!! ATTATTAGGGTACCGATCCA+AGG - chr7_3:368929-368948 None:intergenic 40.0%
! AAATGTTTTCGTTGGGGTAG+GGG - chr7_3:369042-369061 None:intergenic 40.0%
! CAAATGTTTTCGTTGGGGTA+GGG - chr7_3:369043-369062 None:intergenic 40.0%
! ACAAATGTTTTCGTTGGGGT+AGG - chr7_3:369044-369063 None:intergenic 40.0%
ATTGTACGGCTGTTAATGTC+AGG - chr7_3:369124-369143 None:intergenic 40.0%
TGCAAAACATGTAGCGAGAT+CGG - chr7_3:369176-369195 None:intergenic 40.0%
!! ATATCAAGTTGGACCTTACG+GGG - chr7_3:369349-369368 None:intergenic 40.0%
!! GATATCAAGTTGGACCTTAC+GGG - chr7_3:369350-369369 None:intergenic 40.0%
!! GGATATCAAGTTGGACCTTA+CGG - chr7_3:369351-369370 None:intergenic 40.0%
TGCAAGAGTGGATATCAAGT+TGG - chr7_3:369360-369379 None:intergenic 40.0%
CAAATAGATGCAGGATAGCA+GGG + chr7_3:369433-369452 Msa1087580:intron 40.0%
! AAAGCCAATATCTGAAACCC+TGG + chr7_3:369521-369540 Msa1087580:intron 40.0%
AGAACCAGGGTTTCAGATAT+TGG - chr7_3:369528-369547 None:intergenic 40.0%
! AACCCTGGTTCTCCAAAAAA+CGG + chr7_3:369536-369555 Msa1087580:intron 40.0%
!!! TTCCGTTTTTTGGAGAACCA+GGG - chr7_3:369541-369560 None:intergenic 40.0%
!!! TTTCCGTTTTTTGGAGAACC+AGG - chr7_3:369542-369561 None:intergenic 40.0%
! CACGTGTATCAGTATTGGAT+TGG - chr7_3:369587-369606 None:intergenic 40.0%
AAATTGGGTGTGTCGTATTC+GGG - chr7_3:369714-369733 None:intergenic 40.0%
TAGATTGGGTGTGTCGTATT+CGG - chr7_3:369789-369808 None:intergenic 40.0%
GGAATGAGAAGAAGTTGAGA+GGG - chr7_3:369844-369863 None:intergenic 40.0%
TGGAATGAGAAGAAGTTGAG+AGG - chr7_3:369845-369864 None:intergenic 40.0%
TTCCAAAATGCAAATCCACC+TGG + chr7_3:369860-369879 Msa1087580:intron 40.0%
TCTGTTGACATATCTAGGCT+TGG + chr7_3:369993-370012 Msa1087580:intron 40.0%
TCCAGTCCTCCAAAGATATA+CGG + chr7_3:370222-370241 Msa1087580:intron 40.0%
!! AGTATCGACCCGTATATCTT+TGG - chr7_3:370234-370253 None:intergenic 40.0%
AGATATACGGGTCGATACTT+TGG + chr7_3:370235-370254 Msa1087580:intron 40.0%
!! CATGTCACTTTCTTTGATCG+AGG + chr7_3:370380-370399 Msa1087580:intron 40.0%
GAAAGTAGAAGCTCCTTGTT+TGG + chr7_3:370515-370534 Msa1087580:intron 40.0%
ACCAAGACAGCCTGTTTATA+GGG - chr7_3:370553-370572 None:intergenic 40.0%
TACCAAGACAGCCTGTTTAT+AGG - chr7_3:370554-370573 None:intergenic 40.0%
!!! GGTAGTGCGTCTTAGTTTTT+TGG + chr7_3:370587-370606 Msa1087580:intron 40.0%
TAAAATAGGCGTGCACAGAA+AGG + chr7_3:370640-370659 Msa1087580:intron 40.0%
! GAATTGTTAGTTTGGCCCAT+TGG + chr7_3:370730-370749 Msa1087580:intron 40.0%
AGTACGAAATACAGCGGAAT+AGG - chr7_3:370832-370851 None:intergenic 40.0%
GCATCTAGTACGAAATACAG+CGG - chr7_3:370838-370857 None:intergenic 40.0%
TAGATGCTTTATGTGGGTCT+AGG + chr7_3:370851-370870 Msa1087580:intron 40.0%
!! TTGCTGGAATTCTGGTTTAC+TGG + chr7_3:370948-370967 Msa1087580:intron 40.0%
ACAGAAGCTCTGCATGAAAT+AGG - chr7_3:370992-371011 None:intergenic 40.0%
TGTGGTTCTCCATTTAGAAG+TGG - chr7_3:371139-371158 None:intergenic 40.0%
! TAATACACAGCTTTGATGGC+TGG - chr7_3:371486-371505 None:intergenic 40.0%
! GGCATAATACACAGCTTTGA+TGG - chr7_3:371490-371509 None:intergenic 40.0%
TCATTGAATTTGCGAAGGCT+AGG + chr7_3:371575-371594 Msa1087580:three_prime_UTR 40.0%
TCAATGTCATGGTTCATGCT+AGG + chr7_3:371617-371636 Msa1087580:three_prime_UTR 40.0%
CAATGTCATGGTTCATGCTA+GGG + chr7_3:371618-371637 Msa1087580:three_prime_UTR 40.0%
AATGTCATGGTTCATGCTAG+GGG + chr7_3:371619-371638 Msa1087580:three_prime_UTR 40.0%
!! GGAAAATTCTAGAGTGTAGG+TGG + chr7_3:371681-371700 Msa1087580:three_prime_UTR 40.0%
TGCACATATGCTTGATGAGT+AGG + chr7_3:371859-371878 Msa1087580:three_prime_UTR 40.0%
TATCTGAAGACCAAGCATAG+AGG + chr7_3:371976-371995 Msa1087580:three_prime_UTR 40.0%
TGAAAGCTTACCTCTATGCT+TGG - chr7_3:371989-372008 None:intergenic 40.0%
CTTCCACATTCACATTGATG+TGG - chr7_3:372232-372251 None:intergenic 40.0%
AACATTTGGGCAAACTACAC+TGG + chr7_3:372676-372695 Msa1087580:three_prime_UTR 40.0%
TTTAACCAATCTGGTCCACT+TGG + chr7_3:372791-372810 Msa1087580:three_prime_UTR 40.0%
CTTGTATGCAACTTGCATGT+GGG + chr7_3:372819-372838 Msa1087580:three_prime_UTR 40.0%
! TTTTGATGAGGGAAGGAGGA+AGG - chr7_3:366871-366890 None:intergenic 45.0%
GACTATTCGATTTCGCGAGA+AGG - chr7_3:367033-367052 None:intergenic 45.0%
ACGGTGACTGCTATTGCTTA+TGG + chr7_3:367057-367076 Msa1087580:exon 45.0%
TTAGAGTCGCTGATGAACGA+CGG + chr7_3:367112-367131 Msa1087580:CDS 45.0%
ACGGCACAATTGATGCTCTT+AGG + chr7_3:367131-367150 Msa1087580:CDS 45.0%
CTGTGACTTACTCAAGCTCT+TGG - chr7_3:367822-367841 None:intergenic 45.0%
TTTCTGTGTCTGTTGCATGC+TGG + chr7_3:367911-367930 Msa1087580:intron 45.0%
TTCTGTGTCTGTTGCATGCT+GGG + chr7_3:367912-367931 Msa1087580:intron 45.0%
CAAATGTAGCACTGTCACTG+GGG - chr7_3:368204-368223 None:intergenic 45.0%
GCAAATGTAGCACTGTCACT+GGG - chr7_3:368205-368224 None:intergenic 45.0%
TGCAAATGTAGCACTGTCAC+TGG - chr7_3:368206-368225 None:intergenic 45.0%
AAACGTGCGCAAAACATAGG+TGG - chr7_3:368264-368283 None:intergenic 45.0%
GGAAAACGTGCGCAAAACAT+AGG - chr7_3:368267-368286 None:intergenic 45.0%
!! ACTTGATGGTGCAGGAAGAA+TGG - chr7_3:368436-368455 None:intergenic 45.0%
ATTCTTCCTGCACCATCAAG+TGG + chr7_3:368435-368454 Msa1087580:intron 45.0%
! AATCCGAAGAGTACATGTGG+GGG + chr7_3:368809-368828 Msa1087580:intron 45.0%
! CCGTACAATACAAAAGGCGT+AGG - chr7_3:368904-368923 None:intergenic 45.0%
! TAAGTTGGAATCTCCCCGTA+AGG + chr7_3:369333-369352 Msa1087580:intron 45.0%
CTAGCATTACTGCTAATGCG+TGG + chr7_3:369389-369408 Msa1087580:intron 45.0%
CCTGCTATCCTGCATCTATT+TGG - chr7_3:369435-369454 None:intergenic 45.0%
CCAAATAGATGCAGGATAGC+AGG + chr7_3:369432-369451 Msa1087580:intron 45.0%
CAGGGTCTAGGAATATACTG+TGG + chr7_3:369451-369470 Msa1087580:intron 45.0%
TACTGTGGCCCTCAGATTAT+TGG + chr7_3:369466-369485 Msa1087580:intron 45.0%
ACTGTGGCCCTCAGATTATT+GGG + chr7_3:369467-369486 Msa1087580:intron 45.0%
AGATTGGGTGTGTCGTATTC+GGG - chr7_3:369788-369807 None:intergenic 45.0%
!! TGCCAGGTGGATTTGCATTT+TGG - chr7_3:369865-369884 None:intergenic 45.0%
!! TGGAGAAGAGGGGTCTTATT+TGG - chr7_3:369890-369909 None:intergenic 45.0%
ACATGATTACAAGCAAGCCC+TGG - chr7_3:369914-369933 None:intergenic 45.0%
AAAGAGAGCAACTCCGCAAA+TGG - chr7_3:369967-369986 None:intergenic 45.0%
TGACATATCTAGGCTTGGAC+TGG + chr7_3:369998-370017 Msa1087580:intron 45.0%
GACATATCTAGGCTTGGACT+GGG + chr7_3:369999-370018 Msa1087580:intron 45.0%
CCAGTCCTCCAAAGATATAC+GGG + chr7_3:370223-370242 Msa1087580:intron 45.0%
ATCGACCCGTATATCTTTGG+AGG - chr7_3:370231-370250 None:intergenic 45.0%
TTCAATCCCGTGTTTGTGCA+TGG - chr7_3:370327-370346 None:intergenic 45.0%
AGCTCTGCATGAAATAGGCA+TGG - chr7_3:370987-371006 None:intergenic 45.0%
TCTCACTTATCTCCTTTCCC+AGG - chr7_3:371066-371085 None:intergenic 45.0%
!! AGAGTGTTTTGCCGATTGAG+TGG + chr7_3:371094-371113 Msa1087580:CDS 45.0%
GTGGAAATAAAGGAGGTTCC+TGG - chr7_3:371120-371139 None:intergenic 45.0%
GCCGACAGCAGAAAAGAAAA+AGG + chr7_3:371172-371191 Msa1087580:CDS 45.0%
TGATATTGCTGCAGGATCAG+AGG - chr7_3:371325-371344 None:intergenic 45.0%
GATCCTGCAGCAATATCAGA+AGG + chr7_3:371327-371346 Msa1087580:CDS 45.0%
GAACCTTCTGATATTGCTGC+AGG - chr7_3:371333-371352 None:intergenic 45.0%
GCAGCAATATCAGAAGGTTC+TGG + chr7_3:371333-371352 Msa1087580:CDS 45.0%
!! CAGAAACTTGTTGAACTCCC+TGG - chr7_3:371390-371409 None:intergenic 45.0%
GTAAGGGAAGTGATCACATC+TGG + chr7_3:371409-371428 Msa1087580:CDS 45.0%
! AAAGGCATACAAGGTGTCTG+AGG - chr7_3:371511-371530 None:intergenic 45.0%
! TCCATCCTTGATTAGCTGGA+TGG + chr7_3:371902-371921 Msa1087580:three_prime_UTR 45.0%
CTTCAGATAGCATGGCAAAG+AGG - chr7_3:371965-371984 None:intergenic 45.0%
! TGCTTGGTCTTCAGATAGCA+TGG - chr7_3:371973-371992 None:intergenic 45.0%
CAAATGGAGCTCAAACTCCA+AGG - chr7_3:372096-372115 None:intergenic 45.0%
ACCTACTCTAAGTGCGTGTT+TGG + chr7_3:372127-372146 Msa1087580:three_prime_UTR 45.0%
ACCAAACACGCACTTAGAGT+AGG - chr7_3:372131-372150 None:intergenic 45.0%
GAATTCACGGTAACAAGCCA+CGG + chr7_3:372158-372177 Msa1087580:three_prime_UTR 45.0%
GCTCCACATCAATGTGAATG+TGG + chr7_3:372226-372245 Msa1087580:three_prime_UTR 45.0%
GAACAAAGCGACTTCTTCGA+AGG + chr7_3:372292-372311 Msa1087580:three_prime_UTR 45.0%
! TTCTTCGAAGGCACACATTC+AGG + chr7_3:372304-372323 Msa1087580:three_prime_UTR 45.0%
! TCTTCGAAGGCACACATTCA+GGG + chr7_3:372305-372324 Msa1087580:three_prime_UTR 45.0%
! ACTGTGTGCTTGTATTGGTG+TGG + chr7_3:372624-372643 Msa1087580:three_prime_UTR 45.0%
TGCATACAAGCACAACCAAG+TGG - chr7_3:372809-372828 Msa1087590:CDS 45.0%
GCTTGTATGCAACTTGCATG+TGG + chr7_3:372818-372837 Msa1087580:three_prime_UTR 45.0%
ATGAAAGCCTTGACTCCAAG+AGG + chr7_3:372871-372890 Msa1087580:three_prime_UTR 45.0%
ATGTCTTCCTCTTGGAGTCA+AGG - chr7_3:372881-372900 Msa1087590:CDS 45.0%
CTCCAAGAGGAAGACATCAT+CGG + chr7_3:372884-372903 Msa1087580:three_prime_UTR 45.0%
ATCCGATGATGTCTTCCTCT+TGG - chr7_3:372889-372908 Msa1087590:CDS 45.0%
!! ATATATATATATATATAAGT+TGG + chr7_3:369318-369337 Msa1087580:intron 5.0%
TGATGTGCCCCACACTCTAT+AGG - chr7_3:366791-366810 None:intergenic 50.0%
!! AGTAAGGTTCTGAACACCCC+TGG + chr7_3:367754-367773 Msa1087580:CDS 50.0%
! TGGTCTGTTTCTCAGCACCA+GGG - chr7_3:367774-367793 None:intergenic 50.0%
! TTGGTCTGTTTCTCAGCACC+AGG - chr7_3:367775-367794 None:intergenic 50.0%
! TTGGGAAGCAAGTTGGGAGT+TGG - chr7_3:368395-368414 None:intergenic 50.0%
!! GTCTTATTTGGTGTGCCAGG+TGG - chr7_3:369878-369897 None:intergenic 50.0%
! CCCGTATATCTTTGGAGGAC+TGG - chr7_3:370226-370245 None:intergenic 50.0%
!! CGGGTCGATACTTTGGTTCT+TGG + chr7_3:370242-370261 Msa1087580:intron 50.0%
GCCCTATAAACAGGCTGTCT+TGG + chr7_3:370549-370568 Msa1087580:intron 50.0%
AGACAACAATGGCCTGGGAA+AGG + chr7_3:371051-371070 Msa1087580:CDS 50.0%
TGGAGAACCACAACCCGATA+AGG + chr7_3:371147-371166 Msa1087580:CDS 50.0%
AGAACCACAACCCGATAAGG+AGG + chr7_3:371150-371169 Msa1087580:CDS 50.0%
GCCATCCAGCTAATCAAGGA+TGG - chr7_3:371906-371925 None:intergenic 50.0%
AGTCGCCATCCAGCTAATCA+AGG - chr7_3:371910-371929 None:intergenic 50.0%
GCTCAAACTCCAAGGATGTC+AGG - chr7_3:372088-372107 None:intergenic 50.0%
TGTGGAGCTGAACACACAGT+TGG - chr7_3:372214-372233 None:intergenic 50.0%
AAGGCACACATTCAGGGTCT+TGG + chr7_3:372311-372330 Msa1087580:three_prime_UTR 50.0%
CACAACCAAGTGGACCAGAT+TGG - chr7_3:372799-372818 Msa1087590:CDS 50.0%
TGATGAGGGAAGGAGGAAGG+AGG - chr7_3:366868-366887 None:intergenic 55.0%
! TGGGTGCCGTGTTAGTTTCG+AGG - chr7_3:366920-366939 None:intergenic 55.0%
! GGTCTGTTTCTCAGCACCAG+GGG - chr7_3:367773-367792 None:intergenic 55.0%
TGGCCCCCACATGTACTCTT+CGG - chr7_3:368815-368834 None:intergenic 55.0%
GATGCAGGATAGCAGGGTCT+AGG + chr7_3:369439-369458 Msa1087580:intron 55.0%
GCAACCAAAGACATGGCCAC+TGG + chr7_3:369682-369701 Msa1087580:intron 55.0%
GGTGTGTCGTATTCGGGTAC+TGG - chr7_3:369708-369727 None:intergenic 55.0%
!! TCGGGTACTGGCCATGTCTT+TGG - chr7_3:369770-369789 None:intergenic 55.0%
GGTGTGTCGTATTCGGGTAC+TGG - chr7_3:369708-369727 None:intergenic 55.0%
!! GGGGTCTTATTTGGTGTGCC+AGG - chr7_3:369881-369900 None:intergenic 55.0%
GATTACAAGCAAGCCCTGGC+TGG - chr7_3:369910-369929 None:intergenic 55.0%
!! GTTTTGCCGATTGAGTGGCC+AGG + chr7_3:371099-371118 Msa1087580:CDS 55.0%
GAGGTTCCTGGCCACTCAAT+CGG - chr7_3:371108-371127 None:intergenic 55.0%
TCTGCTGTCGGCCTCCTTAT+CGG - chr7_3:371164-371183 None:intergenic 55.0%
GTGCAGATGAAACTGCCACC+AGG + chr7_3:371277-371296 Msa1087580:CDS 55.0%
TGCGAAGGCTAGGAGATGTG+AGG + chr7_3:371585-371604 Msa1087580:three_prime_UTR 55.0%
TGCAAGTCGCCTGACATCCT+TGG + chr7_3:372076-372095 Msa1087580:three_prime_UTR 55.0%
TTCACGGTAACAAGCCACGG+TGG + chr7_3:372161-372180 Msa1087580:three_prime_UTR 55.0%
TCACGGTAACAAGCCACGGT+GGG + chr7_3:372162-372181 Msa1087580:three_prime_UTR 55.0%
!! GGGGTTTGGTGTTCGACACG+TGG + chr7_3:367498-367517 Msa1087580:intron 60.0%
CTGGCCAGTGGCCATGTCTT+TGG - chr7_3:369689-369708 None:intergenic 60.0%
!! CGTATTCGGGTACTGGCCAG+TGG - chr7_3:369701-369720 None:intergenic 60.0%
AAGACCCCTCTTCTCCAGCC+AGG + chr7_3:369893-369912 Msa1087580:intron 60.0%
AGACCCCTCTTCTCCAGCCA+GGG + chr7_3:369894-369913 Msa1087580:intron 60.0%
AAGCCCTGGCTGGAGAAGAG+GGG - chr7_3:369900-369919 None:intergenic 60.0%
CAAGCCCTGGCTGGAGAAGA+GGG - chr7_3:369901-369920 None:intergenic 60.0%
! TCGGCCTCCTTATCGGGTTG+TGG - chr7_3:371157-371176 None:intergenic 60.0%
CTGCTGTCGGCCTCCTTATC+GGG - chr7_3:371163-371182 None:intergenic 60.0%
AGGATCAGAGGACCTGGTGG+CGG - chr7_3:371313-371332 None:intergenic 60.0%
TGCAGGATCAGAGGACCTGG+TGG - chr7_3:371316-371335 None:intergenic 60.0%
TGCTGCAGGATCAGAGGACC+TGG - chr7_3:371319-371338 None:intergenic 60.0%
GCATAGCTTCTGTCCCACCG+TGG - chr7_3:372178-372197 None:intergenic 60.0%
GCAAGCCCTGGCTGGAGAAG+AGG - chr7_3:369902-369921 None:intergenic 65.0%
GGCGGGATCAGAAGACCTGG+TGG - chr7_3:371295-371314 None:intergenic 65.0%
!! GGTGGCGGGATCAGAAGACC+TGG - chr7_3:371298-371317 None:intergenic 65.0%
GGTCTTCTGATCCCGCCACC+AGG + chr7_3:371298-371317 Msa1087580:CDS 65.0%
GGATCAGAGGACCTGGTGGC+GGG - chr7_3:371312-371331 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 366782 373059 366782 ID=Msa1087580;Name=Msa1087580
chr7_3 mRNA 366782 373059 366782 ID=Msa1087580-mRNA-1;Parent=Msa1087580;Name=Msa1087580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=294|1|1|1|0.66|0.5|4|1448|228
chr7_3 exon 366782 367183 366782 ID=Msa1087580-mRNA-1:exon:132;Parent=Msa1087580-mRNA-1
chr7_3 exon 367715 367830 367715 ID=Msa1087580-mRNA-1:exon:133;Parent=Msa1087580-mRNA-1
chr7_3 exon 371003 372385 371003 ID=Msa1087580-mRNA-1:exon:134;Parent=Msa1087580-mRNA-1
chr7_3 exon 372532 373059 372532 ID=Msa1087580-mRNA-1:exon:135;Parent=Msa1087580-mRNA-1
chr7_3 five_prime_UTR 366782 367075 366782 ID=Msa1087580-mRNA-1:five_prime_utr;Parent=Msa1087580-mRNA-1
chr7_3 CDS 367076 367183 367076 ID=Msa1087580-mRNA-1:cds;Parent=Msa1087580-mRNA-1
chr7_3 CDS 367715 367830 367715 ID=Msa1087580-mRNA-1:cds;Parent=Msa1087580-mRNA-1
chr7_3 CDS 371003 371465 371003 ID=Msa1087580-mRNA-1:cds;Parent=Msa1087580-mRNA-1
chr7_3 three_prime_UTR 371466 372385 371466 ID=Msa1087580-mRNA-1:three_prime_utr;Parent=Msa1087580-mRNA-1
chr7_3 three_prime_UTR 372532 373059 372532 ID=Msa1087580-mRNA-1:three_prime_utr;Parent=Msa1087580-mRNA-1
Gene Sequence

>Msa1087580

ATGGCTTCTTCTTCGGTGATCACTCCCGAAGATGTATTAGAGTCGCTGATGAACGACGGCACAATTGATGCTCTTAGGTTGAAGATCATCAATCAGCTCAAAGCCAATGAGGAACTCAAGAGTACTACTATAAAGATGGCTGAACAGAGTAAGGTTCTGAACACCCCTGGTGCTGAGAAACAGACCAAAAGAGAGCTATTTGATGCGCTTCGCCAAGAGCTTGAAGCTTCTGTTCTTGAGAAAGCATCAAAATCAGTTTGGGATTTAATTTTAGACAACAATGGCCTGGGAAAGGAGATAAGTGAGACTGTTGAAAGAGTGTTTTGCCGATTGAGTGGCCAGGAACCTCCTTTATTTCCACTTCTAAATGGAGAACCACAACCCGATAAGGAGGCCGACAGCAGAAAAGAAAAAGGTAAAGGAAAGCTGAAAGAAAATGAAAATACGAGTTTGATCACTCCATCAAAAAAAGAAGCTTCAGTGAAACAAATTTGGACGGTGCAGATGAAACTGCCACCAGGTCTTCTGATCCCGCCACCAGGTCCTCTGATCCTGCAGCAATATCAGAAGGTTCTGGCAAGTCACCTTTATCAATTTCAAAGACTTGACCAGGGAGTTCAACAAGTTTCTGTAAGGGAAGTGATCACATCTGGTAAATATATTGTTGAACTTGTAGGACTTCACTAG
Protein sequence

>Msa1087580

MASSSVITPEDVLESLMNDGTIDALRLKIINQLKANEELKSTTIKMAEQSKVLNTPGAEKQTKRELFDALRQELEASVLEKASKSVWDLILDNNGLGKEISETVERVFCRLSGQEPPLFPLLNGEPQPDKEADSRKEKGKGKLKENENTSLITPSKKEASVKQIWTVQMKLPPGLLIPPPGPLILQQYQKVLASHLYQFQRLDQGVQQVSVREVITSGKYIVELVGLH*