AlfalfaGEDB | Msa1088180

M. sativa cultivar zhongmu-4 / Msa1088180

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088180	XP_024635521.1	95.443	395	14	2	1	391	1	395	0.0	754

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088180	A0A396IUB9	95.443	395	14	2	1	391	1	395	0.0	754

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0371110	Msa1088180	0.926154	6.920786e-91	-8.615850e-47
Msa0691980	Msa1088180	0.802567	5.277258e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088180	MtrunA17_Chr3g0121521	95.443	395	14	2	1	391	1	395	0.0	754

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1088180	AT3G23910.1	40.759	395	213	5	6	379	14	408	3.95e-87	270
Msa1088180	AT3G24255.2	38.257	413	227	7	6	390	14	426	3.41e-79	250
Msa1088180	AT3G24255.1	41.791	335	179	3	63	381	401	735	1.89e-72	241
Msa1088180	AT3G24255.7	40.988	344	187	3	63	390	483	826	1.18e-71	240
Msa1088180	AT3G23910.2	45.276	254	123	3	142	379	50	303	5.96e-71	225
Msa1088180	AT3G24255.8	43.019	265	135	3	142	390	50	314	4.34e-68	218
Msa1088180	AT3G24255.6	36.294	394	219	8	6	373	14	401	1.73e-65	214

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Find 89 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTCAAACATACAGATTT+TGG	0.181040	7_3:+1189886	None:intergenic
AAGATAATTAAGTGAATGTG+AGG	0.596019	7_3:+1189852	None:intergenic
AAGCACACTTAGGTGTCTTG+TGG	0.641823	7_3:-1191102	Msa1088180:CDS
AATCTCTTTAGCTACATTGG+TGG	0.527069	7_3:+1193936	None:intergenic
ACAGCGAGTTGAAGATACCA+TGG	0.659448	7_3:-1192711	Msa1088180:CDS
ACATTAAGTTGTCTCATGGT+TGG	0.513504	7_3:-1190895	Msa1088180:CDS
ACATTCGTGGAGTAAATCTT+GGG	0.522932	7_3:+1194261	None:intergenic
ACCTATATGCCAACGGTAGA+GGG	0.544751	7_3:-1192746	Msa1088180:CDS
ACTCATTAGATACTCATACT+CGG	0.649710	7_3:-1190037	Msa1088180:CDS
ACTTAGGTGTCTTGTGGTAA+AGG	0.448895	7_3:-1191096	Msa1088180:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCAATCAACGGAAGAAAA+TGG	+	chr7_3:1189712-1189731	None:intergenic	30.0%
TGAATTGAATTACCGAAATC+TGG	+	chr7_3:1190093-1190112	None:intergenic	30.0%
TTCAATCTCTTTAGCTACAT+TGG	+	chr7_3:1190237-1190256	None:intergenic	30.0%
TTTGAATCATATTACATCGG+AGG	-	chr7_3:1190423-1190442	Msa1088180:intron	30.0%
TTCTTGTGATTTAGTCATCT+GGG	+	chr7_3:1190551-1190570	None:intergenic	30.0%
ATTCTTGTGATTTAGTCATC+TGG	+	chr7_3:1190552-1190571	None:intergenic	30.0%
GTCAAAACATGATTACTGAA+TGG	+	chr7_3:1190861-1190880	None:intergenic	30.0%
AAAAGAAGCAGAAAATGTTC+AGG	+	chr7_3:1191076-1191095	None:intergenic	30.0%
CAATCAATAACTCATGATTC+AGG	+	chr7_3:1191492-1191511	None:intergenic	30.0%
TATGACGTTAAAGGATATTC+AGG	-	chr7_3:1191528-1191547	Msa1088180:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	1189668	1194521	1189668	ID=Msa1088180;Name=Msa1088180
chr7_3	mRNA	1189668	1194521	1189668	ID=Msa1088180-mRNA-1;Parent=Msa1088180;Name=Msa1088180-mRNA-1;_AED=0.06;_eAED=0.06;_QI=64\|0.90\|0.91\|1\|0.81\|0.83\|12\|279\|391
chr7_3	exon	1189668	1190069	1189668	ID=Msa1088180-mRNA-1:exon:503;Parent=Msa1088180-mRNA-1
chr7_3	exon	1190808	1190985	1190808	ID=Msa1088180-mRNA-1:exon:502;Parent=Msa1088180-mRNA-1
chr7_3	exon	1191080	1191175	1191080	ID=Msa1088180-mRNA-1:exon:501;Parent=Msa1088180-mRNA-1
chr7_3	exon	1191300	1191355	1191300	ID=Msa1088180-mRNA-1:exon:500;Parent=Msa1088180-mRNA-1
chr7_3	exon	1192640	1192856	1192640	ID=Msa1088180-mRNA-1:exon:499;Parent=Msa1088180-mRNA-1
chr7_3	exon	1192939	1193009	1192939	ID=Msa1088180-mRNA-1:exon:498;Parent=Msa1088180-mRNA-1
chr7_3	exon	1193207	1193287	1193207	ID=Msa1088180-mRNA-1:exon:497;Parent=Msa1088180-mRNA-1
chr7_3	exon	1193745	1193809	1193745	ID=Msa1088180-mRNA-1:exon:496;Parent=Msa1088180-mRNA-1
chr7_3	exon	1193908	1194009	1193908	ID=Msa1088180-mRNA-1:exon:495;Parent=Msa1088180-mRNA-1
chr7_3	exon	1194090	1194153	1194090	ID=Msa1088180-mRNA-1:exon:494;Parent=Msa1088180-mRNA-1
chr7_3	exon	1194246	1194342	1194246	ID=Msa1088180-mRNA-1:exon:493;Parent=Msa1088180-mRNA-1
chr7_3	exon	1194432	1194521	1194432	ID=Msa1088180-mRNA-1:exon:492;Parent=Msa1088180-mRNA-1
chr7_3	five_prime_UTR	1194458	1194521	1194458	ID=Msa1088180-mRNA-1:five_prime_utr;Parent=Msa1088180-mRNA-1
chr7_3	CDS	1194432	1194457	1194432	ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1
chr7_3	CDS	1194246	1194342	1194246	ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1
chr7_3	CDS	1194090	1194153	1194090	ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1
chr7_3	CDS	1193908	1194009	1193908	ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1
chr7_3	CDS	1193745	1193809	1193745	ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1
chr7_3	CDS	1193207	1193287	1193207	ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1
chr7_3	CDS	1192939	1193009	1192939	ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1
chr7_3	CDS	1192640	1192856	1192640	ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1
chr7_3	CDS	1191300	1191355	1191300	ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1
chr7_3	CDS	1191080	1191175	1191080	ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1
chr7_3	CDS	1190808	1190985	1190808	ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1
chr7_3	CDS	1189947	1190069	1189947	ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1
chr7_3	three_prime_UTR	1189668	1189946	1189668	ID=Msa1088180-mRNA-1:three_prime_utr;Parent=Msa1088180-mRNA-1

Gene Sequence

>Msa1088180

ATGGCAGAAGCAAGTGAACTCCGCAGTCGAATTTCACAGATTCACAAATTCATCGAAGAAGAAGAAGAATCAAACCCTTCAGATTCCCAAGATTTACTCCACGAATGTGCTCTTCATGTTCAAAACACAGTGGAACAAATTGTTTCCGAATTCTCTGATCTCTCTTCTTTACAAAATCCAGATTTCGATGCTTACATAGAGCATTTGGAAAAGGAACTTAACAATGTACAAGTTGAATCCACCAATGTAGCTAAAGAGATTGAAAATCTCGCGAAAACTCGTAACGATGATTCTATTCTTTTGGAGGCTAAACTTGAAGAGTTGGAATGTTCTTTGAATCATATTACATCGGAGGAGCAGATAAATGCTGAGGCTAATGAGGGAATTTCTTCAATGCTGGTAGACACCGACATGAATCTAGGCGAAAATTTGGAGCAATTGGAACTTGGGAATAAGGTTGATGAAATGAAGTCGATTCTGAAGGCCATGGAGTCTTTTCATTGTAAGTTTGATGCTTTAGAGCAGATTGACAATGCATTGACAGGTCTAAAAGTGATTGGAATTGATAAGAATTGCATTAAGCTGTCTTTGCAGACCTATATGCCAACGGTAGAGGGCATTTCATGCCTACAGCGAGTTGAAGATACCATGGATGCATCTATCCTGAATCATGAGTTATTGATTGAAGTGTTGGAGGGGACTATGACGTTAAAGGATATTCAGGTTTTTCCAAATGATATATACGTGGATGACATTGTTGATACTGCAAAGTCTGTCAGCAAGTCCTCATTGCAATGGTTAATACAAAAACTGCAAGATAGAATTATACTAAGCACACTTAGGTGTCTTGTGGTAAAGGATGCTAACAAATCAAGATATTCTCTTGAATACTTGGACAAAGATGAGACCATTGTAGCTCATTTGGTTAGAGGAATTGATGCATACATTAAGTTGTCTCATGGTTGGCCAATATTTGGTTCTCCGTTGAAGCTAATATCAATCAAGGGATCAGATATTTTGAAGAAAAGTTCAAGTTTTCTCTGCGAAGTAGAGAATTTGGCCAACTCATTAGATACTCATACTCGGCAAAATATACTGGGCTTCGTTGATGCTGTTGAAAAAGTTCTTATAGAGCAGTTGCAGCTTGATCCTAGAGCCGGTGATGGTTCTGGCTAA

Protein sequence

>Msa1088180

MAEASELRSRISQIHKFIEEEEESNPSDSQDLLHECALHVQNTVEQIVSEFSDLSSLQNPDFDAYIEHLEKELNNVQVESTNVAKEIENLAKTRNDDSILLEAKLEELECSLNHITSEEQINAEANEGISSMLVDTDMNLGENLEQLELGNKVDEMKSILKAMESFHCKFDALEQIDNALTGLKVIGIDKNCIKLSLQTYMPTVEGISCLQRVEDTMDASILNHELLIEVLEGTMTLKDIQVFPNDIYVDDIVDTAKSVSKSSLQWLIQKLQDRIILSTLRCLVVKDANKSRYSLEYLDKDETIVAHLVRGIDAYIKLSHGWPIFGSPLKLISIKGSDILKKSSSFLCEVENLANSLDTHTRQNILGFVDAVEKVLIEQLQLDPRAGDGSG*