Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088180 | XP_024635521.1 | 95.443 | 395 | 14 | 2 | 1 | 391 | 1 | 395 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088180 | A0A396IUB9 | 95.443 | 395 | 14 | 2 | 1 | 391 | 1 | 395 | 0.0 | 754 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0691980 | Msa1088180 | 0.802567 | 5.277258e-49 | -8.615850e-47 |
| Msa0371110 | Msa1088180 | 0.926154 | 6.920786e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088180 | MtrunA17_Chr3g0121521 | 95.443 | 395 | 14 | 2 | 1 | 391 | 1 | 395 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088180 | AT3G23910.1 | 40.759 | 395 | 213 | 5 | 6 | 379 | 14 | 408 | 3.95e-87 | 270 |
| Msa1088180 | AT3G24255.2 | 38.257 | 413 | 227 | 7 | 6 | 390 | 14 | 426 | 3.41e-79 | 250 |
| Msa1088180 | AT3G24255.1 | 41.791 | 335 | 179 | 3 | 63 | 381 | 401 | 735 | 1.89e-72 | 241 |
| Msa1088180 | AT3G24255.7 | 40.988 | 344 | 187 | 3 | 63 | 390 | 483 | 826 | 1.18e-71 | 240 |
| Msa1088180 | AT3G23910.2 | 45.276 | 254 | 123 | 3 | 142 | 379 | 50 | 303 | 5.96e-71 | 225 |
| Msa1088180 | AT3G24255.8 | 43.019 | 265 | 135 | 3 | 142 | 390 | 50 | 314 | 4.34e-68 | 218 |
| Msa1088180 | AT3G24255.6 | 36.294 | 394 | 219 | 8 | 6 | 373 | 14 | 401 | 1.73e-65 | 214 |
Find 89 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATTCACATTTGAAATT+TGG | 0.100664 | 7_3:-1194483 | Msa1088180:five_prime_UTR |
| AACTTCAAACATACAGATTT+TGG | 0.181040 | 7_3:+1189886 | None:intergenic |
| CCCAACCTCGTTGCTCATTA+TGG | 0.220572 | 7_3:-1189915 | Msa1088180:three_prime_UTR |
| GCAATTGGAACTTGGGAATA+AGG | 0.235791 | 7_3:-1192988 | Msa1088180:CDS |
| CATGAATCTAGGCGAAAATT+TGG | 0.266114 | 7_3:-1193209 | Msa1088180:CDS |
| TATGACGTTAAAGGATATTC+AGG | 0.272206 | 7_3:-1192639 | Msa1088180:intron |
| TCTCATGGTTGGCCAATATT+TGG | 0.273858 | 7_3:-1190884 | Msa1088180:CDS |
| TGAATTGAATTACCGAAATC+TGG | 0.279388 | 7_3:+1194077 | None:intergenic |
| TTTCTTCCGTTGATTGATAA+TGG | 0.295499 | 7_3:-1194454 | Msa1088180:exon |
| TCATACTCGGCAAAATATAC+TGG | 0.307505 | 7_3:-1190024 | Msa1088180:CDS |
| TATCAATCAACGGAAGAAAA+TGG | 0.321391 | 7_3:+1194458 | None:intergenic |
| TGAGACCATTGTAGCTCATT+TGG | 0.323304 | 7_3:-1190936 | Msa1088180:CDS |
| TCTTTACAAAATCCAGATTT+CGG | 0.332313 | 7_3:-1194089 | Msa1088180:intron |
| CCTAGAGCCGGTGATGGTTC+TGG | 0.353151 | 7_3:-1189951 | Msa1088180:CDS |
| AGATGCTTACATAGAGCATT+TGG | 0.354127 | 7_3:-1193989 | Msa1088180:CDS |
| TCATCCACGTATATATCATT+TGG | 0.371803 | 7_3:+1191327 | None:intergenic |
| CACATTCGTGGAGTAAATCT+TGG | 0.374860 | 7_3:+1194260 | None:intergenic |
| AGAAGAGAGATCAGAGAATT+CGG | 0.378958 | 7_3:+1194109 | None:intergenic |
| GGAGGGGACTATGACGTTAA+AGG | 0.382729 | 7_3:-1192648 | Msa1088180:CDS |
| CAATCAATAACTCATGATTC+AGG | 0.388820 | 7_3:+1192678 | None:intergenic |
| TAGATATTCTCTTGAATACT+TGG | 0.402244 | 7_3:-1190966 | Msa1088180:CDS |
| ATTGTAGCTCATTTGGTTAG+AGG | 0.418807 | 7_3:-1190929 | Msa1088180:CDS |
| TATGTAACATTCAAGTTGTC+AGG | 0.423398 | 7_3:-1189776 | Msa1088180:three_prime_UTR |
| TTCAACGGAGAACCAAATAT+TGG | 0.430959 | 7_3:+1190872 | None:intergenic |
| TTCAATCTCTTTAGCTACAT+TGG | 0.435257 | 7_3:+1193933 | None:intergenic |
| AGGAAACTGACATGCTGAAC+TGG | 0.439381 | 7_3:-1189801 | Msa1088180:three_prime_UTR |
| TGAGTTATTGATTGAAGTGT+TGG | 0.448149 | 7_3:-1192669 | Msa1088180:CDS |
| ACTTAGGTGTCTTGTGGTAA+AGG | 0.448895 | 7_3:-1191096 | Msa1088180:CDS |
| CCATAATGAGCAACGAGGTT+GGG | 0.456774 | 7_3:+1189915 | None:intergenic |
| GGAGGCTAAACTTGAAGAGT+TGG | 0.457166 | 7_3:-1193774 | Msa1088180:CDS |
| GTTGAAGCTAATATCAATCA+AGG | 0.459869 | 7_3:-1190855 | Msa1088180:CDS |
| GCCCTCTACCGTTGGCATAT+AGG | 0.460761 | 7_3:+1192745 | None:intergenic |
| GCCGGTGATGGTTCTGGCTA+AGG | 0.462788 | 7_3:-1189945 | Msa1088180:exon |
| TTGACAGGTCTAAAAGTGAT+TGG | 0.465270 | 7_3:-1192803 | Msa1088180:CDS |
| TTGATACTGCAAAGTCTGTC+AGG | 0.467306 | 7_3:-1191299 | Msa1088180:intron |
| GACCTATATGCCAACGGTAG+AGG | 0.482139 | 7_3:-1192747 | Msa1088180:CDS |
| TTGATTGATATTAGCTTCAA+CGG | 0.489420 | 7_3:+1190857 | None:intergenic |
| TTACATAGAGCATTTGGAAA+AGG | 0.489688 | 7_3:-1193983 | Msa1088180:CDS |
| TCCATAATGAGCAACGAGGT+TGG | 0.494291 | 7_3:+1189914 | None:intergenic |
| GTAGACACCGACATGAATCT+AGG | 0.497575 | 7_3:-1193220 | Msa1088180:CDS |
| GATAAATGCTGAGGCTAATG+AGG | 0.501176 | 7_3:-1193260 | Msa1088180:CDS |
| TGAGGGAATTTCTTCAATGC+TGG | 0.506990 | 7_3:-1193242 | Msa1088180:CDS |
| ACATTAAGTTGTCTCATGGT+TGG | 0.513504 | 7_3:-1190895 | Msa1088180:CDS |
| TAAAGGATGCTAACAAATCA+AGG | 0.518759 | 7_3:-1191079 | Msa1088180:intron |
| ACATTCGTGGAGTAAATCTT+GGG | 0.522932 | 7_3:+1194261 | None:intergenic |
| AATCTCTTTAGCTACATTGG+TGG | 0.527069 | 7_3:+1193936 | None:intergenic |
| TATTGATTGAAGTGTTGGAG+GGG | 0.531809 | 7_3:-1192664 | Msa1088180:CDS |
| GTGTTGCAGCAATTGGAACT+TGG | 0.533115 | 7_3:-1192996 | Msa1088180:intron |
| CCAGAACCATCACCGGCTCT+AGG | 0.534271 | 7_3:+1189951 | None:intergenic |
| CAGATTGACAATGCATTGAC+AGG | 0.537752 | 7_3:-1192818 | Msa1088180:CDS |
| GTTATTGATTGAAGTGTTGG+AGG | 0.538382 | 7_3:-1192666 | Msa1088180:CDS |
| ACCTATATGCCAACGGTAGA+GGG | 0.544751 | 7_3:-1192746 | Msa1088180:CDS |
| CATACTCGGCAAAATATACT+GGG | 0.547411 | 7_3:-1190023 | Msa1088180:CDS |
| TTCTTTGAATCATATTACAT+CGG | 0.556460 | 7_3:-1193747 | Msa1088180:CDS |
| TGGTATCTTCAACTCGCTGT+AGG | 0.556765 | 7_3:+1192714 | None:intergenic |
| GAACATGAAGAGCACATTCG+TGG | 0.557107 | 7_3:+1194248 | None:intergenic |
| TCCTTAGCCAGAACCATCAC+CGG | 0.568413 | 7_3:+1189944 | None:intergenic |
| TTTGAATCATATTACATCGG+AGG | 0.568500 | 7_3:-1193744 | Msa1088180:intron |
| CATGAAATGCCCTCTACCGT+TGG | 0.570086 | 7_3:+1192737 | None:intergenic |
| ATTCAGGATAGATGCATCCA+TGG | 0.576247 | 7_3:+1192694 | None:intergenic |
| GAATCTAGGCGAAAATTTGG+AGG | 0.576882 | 7_3:-1193206 | Msa1088180:intron |
| GTAAATCTTGGGAATCTGAA+GGG | 0.577091 | 7_3:+1194272 | None:intergenic |
| CTTGATCCTAGAGCCGGTGA+TGG | 0.581110 | 7_3:-1189957 | Msa1088180:CDS |
| AGTATGAGTATCTAATGAGT+TGG | 0.582228 | 7_3:+1190040 | None:intergenic |
| AGTAAATCTTGGGAATCTGA+AGG | 0.582351 | 7_3:+1194271 | None:intergenic |
| TTGCAGCTTGATCCTAGAGC+CGG | 0.582505 | 7_3:-1189963 | Msa1088180:CDS |
| TCTAACCAAATGAGCTACAA+TGG | 0.590969 | 7_3:+1190931 | None:intergenic |
| CAGAAGCAAGTGAACTCCGC+AGG | 0.591758 | 7_3:-1194431 | Msa1088180:intron |
| GAATTATACTAAGCACACTT+AGG | 0.592429 | 7_3:-1191112 | Msa1088180:CDS |
| CTTCTGCCATTATCAATCAA+CGG | 0.595703 | 7_3:+1194448 | None:intergenic |
| AAGATAATTAAGTGAATGTG+AGG | 0.596019 | 7_3:+1189852 | None:intergenic |
| TTGTATTAACCATTGCAATG+AGG | 0.596339 | 7_3:+1191148 | None:intergenic |
| GAAGTCGATTCTGAAGGCCA+TGG | 0.604104 | 7_3:-1192955 | Msa1088180:CDS |
| GCATACATTAAGTTGTCTCA+TGG | 0.605441 | 7_3:-1190899 | Msa1088180:CDS |
| TGTTGCAGCAATTGGAACTT+GGG | 0.607267 | 7_3:-1192995 | Msa1088180:intron |
| TTGAAGCTAATATCAATCAA+GGG | 0.620980 | 7_3:-1190854 | Msa1088180:CDS |
| GCAGCAAGTCCTCATTGCAA+TGG | 0.623103 | 7_3:-1191157 | Msa1088180:intron |
| CTTACAATGAAAAGACTCCA+TGG | 0.625561 | 7_3:+1192938 | None:intergenic |
| ATAAATGCTGAGGCTAATGA+GGG | 0.636629 | 7_3:-1193259 | Msa1088180:CDS |
| TGAAATGAAGTCGATTCTGA+AGG | 0.636722 | 7_3:-1192961 | Msa1088180:CDS |
| TTATTGATTGAAGTGTTGGA+GGG | 0.637105 | 7_3:-1192665 | Msa1088180:CDS |
| AAGCACACTTAGGTGTCTTG+TGG | 0.641823 | 7_3:-1191102 | Msa1088180:CDS |
| CTCGCGAAAACTCGTAACGA+TGG | 0.646362 | 7_3:-1193907 | Msa1088180:intron |
| ACTCATTAGATACTCATACT+CGG | 0.649710 | 7_3:-1190037 | Msa1088180:CDS |
| ACAGCGAGTTGAAGATACCA+TGG | 0.659448 | 7_3:-1192711 | Msa1088180:CDS |
| ATAGGAGCAGATAAATGCTG+AGG | 0.674029 | 7_3:-1193269 | Msa1088180:intron |
| TTTGCAGACCTATATGCCAA+CGG | 0.681871 | 7_3:-1192753 | Msa1088180:CDS |
| TCATTCTTAACAGAACACAG+TGG | 0.739164 | 7_3:-1194144 | Msa1088180:intron |
| GGTATCCATAATGAGCAACG+AGG | 0.806237 | 7_3:+1189910 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTAAAATAAAATAAA+TGG | - | chr7_3:1193952-1193971 | Msa1088180:CDS | 0.0% |
| !!! | ATTTTTAAAATAAAATAAAT+GGG | - | chr7_3:1193953-1193972 | Msa1088180:CDS | 0.0% |
| !! | ATTGAATAACAAAAACAAAA+CGG | + | chr7_3:1190124-1190143 | None:intergenic | 15.0% |
| !! | AAGAATTAAGAAAATTGATA+TGG | - | chr7_3:1190566-1190585 | Msa1088180:intron | 15.0% |
| !! | ATAAATACTTATTGTTAACT+TGG | + | chr7_3:1190620-1190639 | None:intergenic | 15.0% |
| !! | AGTATTTATATCATATCTAT+TGG | - | chr7_3:1190631-1190650 | Msa1088180:intron | 15.0% |
| !!! | TAACTTAATGTTTTTATATG+TGG | + | chr7_3:1192735-1192754 | None:intergenic | 15.0% |
| !!! | GTTAACTTTAATTCTTTTAA+GGG | - | chr7_3:1194031-1194050 | Msa1088180:intron | 15.0% |
| !! | TTTGTTTCACATAATAACTA+TGG | - | chr7_3:1190305-1190324 | Msa1088180:intron | 20.0% |
| !!! | TTTTTCAGATTCTATTCTTT+TGG | - | chr7_3:1190372-1190391 | Msa1088180:intron | 20.0% |
| !! | TTCTTTGAATCATATTACAT+CGG | - | chr7_3:1190420-1190439 | Msa1088180:intron | 20.0% |
| !! | AAAAACGTGTTAAATACTTA+GGG | - | chr7_3:1190660-1190679 | Msa1088180:intron | 20.0% |
| !!! | TCTTTTACAGAAAATCATTT+TGG | - | chr7_3:1191090-1191109 | Msa1088180:CDS | 20.0% |
| !! | ATTCATTCTGATATTCTATT+TGG | - | chr7_3:1191859-1191878 | Msa1088180:intron | 20.0% |
| !! | GAAAGGGTAATTATAATATT+AGG | - | chr7_3:1192553-1192572 | Msa1088180:intron | 20.0% |
| !!! | TGATGATTTGTTAACTTTTT+TGG | - | chr7_3:1192798-1192817 | Msa1088180:CDS | 20.0% |
| !!! | CTTTTTTGGTTTTGTTATTT+AGG | - | chr7_3:1192812-1192831 | Msa1088180:CDS | 20.0% |
| !! | GGGTTTAATGTTATTAAATT+TGG | - | chr7_3:1193139-1193158 | Msa1088180:intron | 20.0% |
| !!! | TCATTTCTTTTGATAATAAC+TGG | - | chr7_3:1193546-1193565 | Msa1088180:intron | 20.0% |
| !!! | GGTTAACTTTAATTCTTTTA+AGG | - | chr7_3:1194030-1194049 | Msa1088180:intron | 20.0% |
| !! | CATTATAAATAATGCAGTAT+TGG | - | chr7_3:1194054-1194073 | Msa1088180:intron | 20.0% |
| !! | CACAATTCACATTTGAAATT+TGG | - | chr7_3:1189684-1189703 | Msa1088180:three_prime_UTR | 25.0% |
| ! | TCTTTACAAAATCCAGATTT+CGG | - | chr7_3:1190078-1190097 | Msa1088180:intron | 25.0% |
| !!! | AATTGATATGGTGTTATGTT+CGG | - | chr7_3:1190578-1190597 | Msa1088180:intron | 25.0% |
| ! | GAAAAACGTGTTAAATACTT+AGG | - | chr7_3:1190659-1190678 | Msa1088180:intron | 25.0% |
| ! | AAAACGTGTTAAATACTTAG+GGG | - | chr7_3:1190661-1190680 | Msa1088180:intron | 25.0% |
| !!! | TTAAATACTTAGGGGTATTT+TGG | - | chr7_3:1190669-1190688 | Msa1088180:intron | 25.0% |
| ! | ATGTAGTTGAAAATTTCTCA+AGG | - | chr7_3:1190706-1190725 | Msa1088180:intron | 25.0% |
| ! | TGTAGTTGAAAATTTCTCAA+GGG | - | chr7_3:1190707-1190726 | Msa1088180:intron | 25.0% |
| !!! | TTCTCAAGGGTTTTATATAT+AGG | - | chr7_3:1190720-1190739 | Msa1088180:intron | 25.0% |
| !!! | TCTCAAGGGTTTTATATATA+GGG | - | chr7_3:1190721-1190740 | Msa1088180:intron | 25.0% |
| !!! | CAGTCGTTTTTGATAATTAT+AGG | - | chr7_3:1190880-1190899 | Msa1088180:CDS | 25.0% |
| !! | GAATTAGTTTCAAACAAATG+TGG | - | chr7_3:1191040-1191059 | Msa1088180:intron | 25.0% |
| !! | TTTACAGAAAATCATTTTGG+TGG | - | chr7_3:1191093-1191112 | Msa1088180:CDS | 25.0% |
| !! | CTTTTCATTGTAAGTTCAAA+TGG | - | chr7_3:1191238-1191257 | Msa1088180:intron | 25.0% |
| ! | TCAGATAATCATCTATTCTA+TGG | - | chr7_3:1191284-1191303 | Msa1088180:intron | 25.0% |
| ! | AAACAAGTCAAAGAATGAAA+CGG | + | chr7_3:1191569-1191588 | None:intergenic | 25.0% |
| ! | TTGTCAAATCTAATGAACAA+TGG | + | chr7_3:1191599-1191618 | None:intergenic | 25.0% |
| !!! | TGCTTATTCTGCATTTTTTT+TGG | - | chr7_3:1191951-1191970 | Msa1088180:intron | 25.0% |
| !!! | GCTTATTCTGCATTTTTTTT+GGG | - | chr7_3:1191952-1191971 | Msa1088180:intron | 25.0% |
| !! | TTTTACGCATCATTACATAT+TGG | + | chr7_3:1192417-1192436 | None:intergenic | 25.0% |
| ! | AACAGCAAAATATGATGTTA+AGG | + | chr7_3:1192505-1192524 | None:intergenic | 25.0% |
| ! | TCATGTAGAAAACTTATGAA+AGG | - | chr7_3:1192536-1192555 | Msa1088180:intron | 25.0% |
| ! | CATGTAGAAAACTTATGAAA+GGG | - | chr7_3:1192537-1192556 | Msa1088180:intron | 25.0% |
| ! | ATTATAATATTAGGTGACGA+AGG | - | chr7_3:1192562-1192581 | Msa1088180:intron | 25.0% |
| !! | TTTTCCAAATGATATATACG+TGG | - | chr7_3:1192836-1192855 | Msa1088180:CDS | 25.0% |
| !!! | TTTCCTTTTTCTCTTTGTTT+AGG | - | chr7_3:1192898-1192917 | Msa1088180:intron | 25.0% |
| ! | AAACCTAAACAAAGAGAAAA+AGG | + | chr7_3:1192904-1192923 | None:intergenic | 25.0% |
| ! | GCTTAGTTCATAATGAATTT+GGG | + | chr7_3:1192946-1192965 | None:intergenic | 25.0% |
| ! | TGCTTAGTTCATAATGAATT+TGG | + | chr7_3:1192947-1192966 | None:intergenic | 25.0% |
| ! | TAGATATTCTCTTGAATACT+TGG | - | chr7_3:1193201-1193220 | Msa1088180:intron | 25.0% |
| !! | TTGATTGATATTAGCTTCAA+CGG | + | chr7_3:1193313-1193332 | None:intergenic | 25.0% |
| ! | TTGAAGCTAATATCAATCAA+GGG | - | chr7_3:1193313-1193332 | Msa1088180:intron | 25.0% |
| !!! | ATTTTTTATAGCCAACACAT+TGG | + | chr7_3:1193396-1193415 | None:intergenic | 25.0% |
| ! | GTGTTAAAAAATTTCTCATG+TGG | - | chr7_3:1193449-1193468 | Msa1088180:intron | 25.0% |
| ! | AATTTAAGTAAGACAGTTTG+AGG | + | chr7_3:1193488-1193507 | None:intergenic | 25.0% |
| ! | AAATCATGTCTCATATGTTT+CGG | - | chr7_3:1194008-1194027 | Msa1088180:intron | 25.0% |
| !! | AACTTCAAACATACAGATTT+TGG | + | chr7_3:1194284-1194303 | None:intergenic | 25.0% |
| ! | AAGATAATTAAGTGAATGTG+AGG | + | chr7_3:1194318-1194337 | None:intergenic | 25.0% |
| !! | GATTTACTGCAATTTTAGAT+AGG | - | chr7_3:1194346-1194365 | Msa1088180:intron | 25.0% |
| TATCAATCAACGGAAGAAAA+TGG | + | chr7_3:1189712-1189731 | None:intergenic | 30.0% | |
| ! | TTTCTTCCGTTGATTGATAA+TGG | - | chr7_3:1189713-1189732 | Msa1088180:three_prime_UTR | 30.0% |
| TGAATTGAATTACCGAAATC+TGG | + | chr7_3:1190093-1190112 | None:intergenic | 30.0% | |
| ! | TTACATAGAGCATTTGGAAA+AGG | - | chr7_3:1190184-1190203 | Msa1088180:intron | 30.0% |
| TTCAATCTCTTTAGCTACAT+TGG | + | chr7_3:1190237-1190256 | None:intergenic | 30.0% | |
| ! | TTCAGATTCTATTCTTTTGG+AGG | - | chr7_3:1190375-1190394 | Msa1088180:intron | 30.0% |
| TTTGAATCATATTACATCGG+AGG | - | chr7_3:1190423-1190442 | Msa1088180:intron | 30.0% | |
| TTCTTGTGATTTAGTCATCT+GGG | + | chr7_3:1190551-1190570 | None:intergenic | 30.0% | |
| ATTCTTGTGATTTAGTCATC+TGG | + | chr7_3:1190552-1190571 | None:intergenic | 30.0% | |
| !! | AAGGGTTTTATATATAGGGA+AGG | - | chr7_3:1190725-1190744 | Msa1088180:intron | 30.0% |
| GTCAAAACATGATTACTGAA+TGG | + | chr7_3:1190861-1190880 | None:intergenic | 30.0% | |
| AAAAGAAGCAGAAAATGTTC+AGG | + | chr7_3:1191076-1191095 | None:intergenic | 30.0% | |
| CAATCAATAACTCATGATTC+AGG | + | chr7_3:1191492-1191511 | None:intergenic | 30.0% | |
| ! | TGAGTTATTGATTGAAGTGT+TGG | - | chr7_3:1191498-1191517 | Msa1088180:intron | 30.0% |
| !! | TTATTGATTGAAGTGTTGGA+GGG | - | chr7_3:1191502-1191521 | Msa1088180:intron | 30.0% |
| TATGACGTTAAAGGATATTC+AGG | - | chr7_3:1191528-1191547 | Msa1088180:intron | 30.0% | |
| ! | AATTACGTTTTGCAATGATG+TGG | - | chr7_3:1191617-1191636 | Msa1088180:intron | 30.0% |
| ! | CTTTTTCCTAACAGATTTGA+TGG | + | chr7_3:1191660-1191679 | None:intergenic | 30.0% |
| AGTTATAGTGTTAGCCATTT+AGG | - | chr7_3:1191684-1191703 | Msa1088180:intron | 30.0% | |
| !! | TTTCTTGTGGTATTTTGAAG+TGG | - | chr7_3:1191767-1191786 | Msa1088180:intron | 30.0% |
| !!! | CTCAATTGCTTTTAGTTTGA+TGG | - | chr7_3:1191832-1191851 | Msa1088180:intron | 30.0% |
| !!! | ATTCTGCATTTTTTTTGGGA+TGG | - | chr7_3:1191956-1191975 | Msa1088180:intron | 30.0% |
| !!! | TTCTGCATTTTTTTTGGGAT+GGG | - | chr7_3:1191957-1191976 | Msa1088180:intron | 30.0% |
| !! | AATTTGCTGGATATATCATG+TGG | - | chr7_3:1191995-1192014 | Msa1088180:intron | 30.0% |
| TGATTTATGGTCTGTATTCT+AGG | - | chr7_3:1192039-1192058 | Msa1088180:intron | 30.0% | |
| !! | AGTTTTAGTACCTTTGTTGT+AGG | - | chr7_3:1192279-1192298 | Msa1088180:intron | 30.0% |
| GTATTAATCACCTACAACAA+AGG | + | chr7_3:1192292-1192311 | None:intergenic | 30.0% | |
| ! | AATGTTTGGGGTAATGAAAT+TGG | + | chr7_3:1192470-1192489 | None:intergenic | 30.0% |
| ATTCCATCTAGAAATGTTTG+GGG | + | chr7_3:1192482-1192501 | None:intergenic | 30.0% | |
| GATTCCATCTAGAAATGTTT+GGG | + | chr7_3:1192483-1192502 | None:intergenic | 30.0% | |
| TCATCCACGTATATATCATT+TGG | + | chr7_3:1192843-1192862 | None:intergenic | 30.0% | |
| TAGTTCATAATGAATTTGGG+AGG | + | chr7_3:1192943-1192962 | None:intergenic | 30.0% | |
| TTGTATTAACCATTGCAATG+AGG | + | chr7_3:1193022-1193041 | None:intergenic | 30.0% | |
| GAATTATACTAAGCACACTT+AGG | - | chr7_3:1193055-1193074 | Msa1088180:intron | 30.0% | |
| TAAAGGATGCTAACAAATCA+AGG | - | chr7_3:1193088-1193107 | Msa1088180:intron | 30.0% | |
| GTTGAAGCTAATATCAATCA+AGG | - | chr7_3:1193312-1193331 | Msa1088180:intron | 30.0% | |
| AAACTACTACACAATTTCAG+TGG | + | chr7_3:1193522-1193541 | None:intergenic | 30.0% | |
| TAAAAAACAGCATACAGACT+AGG | + | chr7_3:1193600-1193619 | None:intergenic | 30.0% | |
| ! | CTATGATATAGACACTTTTG+AGG | + | chr7_3:1193625-1193644 | None:intergenic | 30.0% |
| TTACTATTACTAGAGTGACT+CGG | - | chr7_3:1193672-1193691 | Msa1088180:intron | 30.0% | |
| !!! | ACATGTTTTGAAGTCACATT+TGG | - | chr7_3:1193779-1193798 | Msa1088180:CDS | 30.0% |
| GTTCTATAGGGTAAAGTAAT+TGG | - | chr7_3:1193810-1193829 | Msa1088180:intron | 30.0% | |
| ! | TCTTTTAGACACGTGTAAAT+AGG | - | chr7_3:1193848-1193867 | Msa1088180:intron | 30.0% |
| AACTAACAGCAAAACATCAA+GGG | + | chr7_3:1193922-1193941 | None:intergenic | 30.0% | |
| AAACTAACAGCAAAACATCA+AGG | + | chr7_3:1193923-1193942 | None:intergenic | 30.0% | |
| AATCATGTCTCATATGTTTC+GGG | - | chr7_3:1194009-1194028 | Msa1088180:intron | 30.0% | |
| AGTATGAGTATCTAATGAGT+TGG | + | chr7_3:1194130-1194149 | None:intergenic | 30.0% | |
| ACTCATTAGATACTCATACT+CGG | - | chr7_3:1194130-1194149 | Msa1088180:CDS | 30.0% | |
| ! | TTCAAACATACAGATTTTGG+CGG | + | chr7_3:1194281-1194300 | None:intergenic | 30.0% |
| !! | TATGTAACATTCAAGTTGTC+AGG | - | chr7_3:1194391-1194410 | Msa1088180:intron | 30.0% |
| CTTCTGCCATTATCAATCAA+CGG | + | chr7_3:1189722-1189741 | None:intergenic | 35.0% | |
| AAGTGAGAGAGTAACGAAAA+CGG | + | chr7_3:1189788-1189807 | None:intergenic | 35.0% | |
| AGGTTTGGAGAATGTGATAA+CGG | + | chr7_3:1189817-1189836 | None:intergenic | 35.0% | |
| TGAAATTCGACTGAAAGGAA+AGG | + | chr7_3:1189837-1189856 | None:intergenic | 35.0% | |
| ATCTGTGAAATTCGACTGAA+AGG | + | chr7_3:1189842-1189861 | None:intergenic | 35.0% | |
| GTAAATCTTGGGAATCTGAA+GGG | + | chr7_3:1189898-1189917 | None:intergenic | 35.0% | |
| AGTAAATCTTGGGAATCTGA+AGG | + | chr7_3:1189899-1189918 | None:intergenic | 35.0% | |
| ACATTCGTGGAGTAAATCTT+GGG | + | chr7_3:1189909-1189928 | None:intergenic | 35.0% | |
| GAAAATTGAAGAATGTGCGT+AGG | + | chr7_3:1189951-1189970 | None:intergenic | 35.0% | |
| TCATTCTTAACAGAACACAG+TGG | - | chr7_3:1190023-1190042 | Msa1088180:CDS | 35.0% | |
| AGAAGAGAGATCAGAGAATT+CGG | + | chr7_3:1190061-1190080 | None:intergenic | 35.0% | |
| ! | AGATGCTTACATAGAGCATT+TGG | - | chr7_3:1190178-1190197 | Msa1088180:intron | 35.0% |
| AATCTCTTTAGCTACATTGG+TGG | + | chr7_3:1190234-1190253 | None:intergenic | 35.0% | |
| AATATACATAACTCACGCCA+GGG | + | chr7_3:1190793-1190812 | None:intergenic | 35.0% | |
| ATAAATGCTGAGGCTAATGA+GGG | - | chr7_3:1190908-1190927 | Msa1088180:CDS | 35.0% | |
| ! | ATTTTCGCCTAGATTCATGT+CGG | + | chr7_3:1190957-1190976 | None:intergenic | 35.0% |
| CATGAATCTAGGCGAAAATT+TGG | - | chr7_3:1190958-1190977 | Msa1088180:CDS | 35.0% | |
| CAATTGCTGCAACACATAAA+AGG | + | chr7_3:1191166-1191185 | None:intergenic | 35.0% | |
| ! | CTTTTATGTGTTGCAGCAAT+TGG | - | chr7_3:1191164-1191183 | Msa1088180:intron | 35.0% |
| ! | TGAAATGAAGTCGATTCTGA+AGG | - | chr7_3:1191206-1191225 | Msa1088180:intron | 35.0% |
| CTTACAATGAAAAGACTCCA+TGG | + | chr7_3:1191232-1191251 | None:intergenic | 35.0% | |
| ! | TAAAGCATCAAACCTGAAAG+GGG | + | chr7_3:1191326-1191345 | None:intergenic | 35.0% |
| ! | CTAAAGCATCAAACCTGAAA+GGG | + | chr7_3:1191327-1191346 | None:intergenic | 35.0% |
| ! | TCTAAAGCATCAAACCTGAA+AGG | + | chr7_3:1191328-1191347 | None:intergenic | 35.0% |
| TTGACAGGTCTAAAAGTGAT+TGG | - | chr7_3:1191364-1191383 | Msa1088180:intron | 35.0% | |
| !! | GTTATTGATTGAAGTGTTGG+AGG | - | chr7_3:1191501-1191520 | Msa1088180:intron | 35.0% |
| !! | TATTGATTGAAGTGTTGGAG+GGG | - | chr7_3:1191503-1191522 | Msa1088180:intron | 35.0% |
| TACGAACCATCAAATCTGTT+AGG | - | chr7_3:1191651-1191670 | Msa1088180:intron | 35.0% | |
| ATAGTGTTAGCCATTTAGGT+AGG | - | chr7_3:1191688-1191707 | Msa1088180:intron | 35.0% | |
| AAAAGCCTTTCACAGTTCAT+AGG | + | chr7_3:1191716-1191735 | None:intergenic | 35.0% | |
| !! | TGCTTTGAAGTTGTTTCTTG+TGG | - | chr7_3:1191754-1191773 | Msa1088180:intron | 35.0% |
| !!! | TCTGCATTTTTTTTGGGATG+GGG | - | chr7_3:1191958-1191977 | Msa1088180:intron | 35.0% |
| ATATCATGTGGTTACATCAG+TGG | - | chr7_3:1192007-1192026 | Msa1088180:intron | 35.0% | |
| TATCATGTGGTTACATCAGT+GGG | - | chr7_3:1192008-1192027 | Msa1088180:intron | 35.0% | |
| !!! | GTGGGTTTGCTTTTGATTTA+TGG | - | chr7_3:1192026-1192045 | Msa1088180:intron | 35.0% |
| AAAATACCAAAATACCCCCA+TGG | + | chr7_3:1192185-1192204 | None:intergenic | 35.0% | |
| CGCATCATTACATATTGGAT+GGG | + | chr7_3:1192412-1192431 | None:intergenic | 35.0% | |
| ACGCATCATTACATATTGGA+TGG | + | chr7_3:1192413-1192432 | None:intergenic | 35.0% | |
| AATGATCCTTCTACCAAACT+GGG | + | chr7_3:1192445-1192464 | None:intergenic | 35.0% | |
| AAATGATCCTTCTACCAAAC+TGG | + | chr7_3:1192446-1192465 | None:intergenic | 35.0% | |
| ! | TTACCCCAAACATTTCTAGA+TGG | - | chr7_3:1192476-1192495 | Msa1088180:intron | 35.0% |
| GGATTCCATCTAGAAATGTT+TGG | + | chr7_3:1192484-1192503 | None:intergenic | 35.0% | |
| CTAAAGGAAGAGATTAGGAA+CGG | + | chr7_3:1192661-1192680 | None:intergenic | 35.0% | |
| ATAATGAATTTGGGAGGAGA+GGG | + | chr7_3:1192937-1192956 | None:intergenic | 35.0% | |
| TGACTGTAATGTAGTCCTTT+CGG | - | chr7_3:1193113-1193132 | Msa1088180:intron | 35.0% | |
| TAATGTAGTCCTTTCGGTTT+GGG | - | chr7_3:1193119-1193138 | Msa1088180:intron | 35.0% | |
| AACATTAAACCCAAACCGAA+AGG | + | chr7_3:1193131-1193150 | None:intergenic | 35.0% | |
| TCTAACCAAATGAGCTACAA+TGG | + | chr7_3:1193239-1193258 | None:intergenic | 35.0% | |
| ATTGTAGCTCATTTGGTTAG+AGG | - | chr7_3:1193238-1193257 | Msa1088180:CDS | 35.0% | |
| ! | GCATACATTAAGTTGTCTCA+TGG | - | chr7_3:1193268-1193287 | Msa1088180:CDS | 35.0% |
| ! | ACATTAAGTTGTCTCATGGT+TGG | - | chr7_3:1193272-1193291 | Msa1088180:intron | 35.0% |
| TTCAACGGAGAACCAAATAT+TGG | + | chr7_3:1193298-1193317 | None:intergenic | 35.0% | |
| TTATTCTTCCTTGTGCTGTA+CGG | - | chr7_3:1193424-1193443 | Msa1088180:intron | 35.0% | |
| TACTATTACTAGAGTGACTC+GGG | - | chr7_3:1193673-1193692 | Msa1088180:intron | 35.0% | |
| TGGGAGTGAGGATAATTTAA+AGG | - | chr7_3:1193754-1193773 | Msa1088180:CDS | 35.0% | |
| TTAGACACGTGTAAATAGGT+AGG | - | chr7_3:1193852-1193871 | Msa1088180:intron | 35.0% | |
| ACTAACAGCAAAACATCAAG+GGG | + | chr7_3:1193921-1193940 | None:intergenic | 35.0% | |
| CACTACAGATACATGTATGT+AGG | + | chr7_3:1193988-1194007 | None:intergenic | 35.0% | |
| !!! | TTTGTGCGTTGACTTTGTTT+TGG | - | chr7_3:1194081-1194100 | Msa1088180:intron | 35.0% |
| !! | TGGGTTGACTTTTCAGAATT+TGG | - | chr7_3:1194104-1194123 | Msa1088180:CDS | 35.0% |
| TCATACTCGGCAAAATATAC+TGG | - | chr7_3:1194143-1194162 | Msa1088180:intron | 35.0% | |
| CATACTCGGCAAAATATACT+GGG | - | chr7_3:1194144-1194163 | Msa1088180:intron | 35.0% | |
| AGAGTAACGAAAACGGAGAA+AGG | + | chr7_3:1189781-1189800 | None:intergenic | 40.0% | |
| TTCGACTGAAAGGAAAGGTT+TGG | + | chr7_3:1189832-1189851 | None:intergenic | 40.0% | |
| CACATTCGTGGAGTAAATCT+TGG | + | chr7_3:1189910-1189929 | None:intergenic | 40.0% | |
| TATGCCTATGCTCATTGTGA+TGG | - | chr7_3:1190759-1190778 | Msa1088180:intron | 40.0% | |
| CAATATACATAACTCACGCC+AGG | + | chr7_3:1190794-1190813 | None:intergenic | 40.0% | |
| ATCCATCCCTTTGTCTAATG+AGG | - | chr7_3:1190822-1190841 | Msa1088180:CDS | 40.0% | |
| TCCATCCCTTTGTCTAATGA+GGG | - | chr7_3:1190823-1190842 | Msa1088180:CDS | 40.0% | |
| ATAGGAGCAGATAAATGCTG+AGG | - | chr7_3:1190898-1190917 | Msa1088180:CDS | 40.0% | |
| GATAAATGCTGAGGCTAATG+AGG | - | chr7_3:1190907-1190926 | Msa1088180:CDS | 40.0% | |
| TGAGGGAATTTCTTCAATGC+TGG | - | chr7_3:1190925-1190944 | Msa1088180:CDS | 40.0% | |
| GAATCTAGGCGAAAATTTGG+AGG | - | chr7_3:1190961-1190980 | Msa1088180:CDS | 40.0% | |
| !!! | GCGTTGGCTGTTATTCTTTT+CGG | - | chr7_3:1191013-1191032 | Msa1088180:intron | 40.0% |
| TGTTGCAGCAATTGGAACTT+GGG | - | chr7_3:1191172-1191191 | Msa1088180:intron | 40.0% | |
| GCAATTGGAACTTGGGAATA+AGG | - | chr7_3:1191179-1191198 | Msa1088180:intron | 40.0% | |
| ! | AAAGCATCAAACCTGAAAGG+GGG | + | chr7_3:1191325-1191344 | None:intergenic | 40.0% |
| ! | CAGATTGACAATGCATTGAC+AGG | - | chr7_3:1191349-1191368 | Msa1088180:intron | 40.0% |
| TTTGCAGACCTATATGCCAA+CGG | - | chr7_3:1191414-1191433 | Msa1088180:intron | 40.0% | |
| ATTCAGGATAGATGCATCCA+TGG | + | chr7_3:1191476-1191495 | None:intergenic | 40.0% | |
| TTCATAGGAGCCTACCTAAA+TGG | + | chr7_3:1191701-1191720 | None:intergenic | 40.0% | |
| AGACCTTGACCAATAAAGTC+AGG | - | chr7_3:1191809-1191828 | Msa1088180:intron | 40.0% | |
| GCAATTGAGCCTGACTTTAT+TGG | + | chr7_3:1191821-1191840 | None:intergenic | 40.0% | |
| !!! | CTGCATTTTTTTTGGGATGG+GGG | - | chr7_3:1191959-1191978 | Msa1088180:intron | 40.0% |
| !!! | TGCATTTTTTTTGGGATGGG+GGG | - | chr7_3:1191960-1191979 | Msa1088180:intron | 40.0% |
| GTGTGAATCTCAGAATTTGC+TGG | - | chr7_3:1191982-1192001 | Msa1088180:intron | 40.0% | |
| !!! | GGGGTATTTTGGTATATCTG+CGG | + | chr7_3:1192104-1192123 | None:intergenic | 40.0% |
| ATATACCAAAATACCCCCAG+CGG | - | chr7_3:1192107-1192126 | Msa1088180:intron | 40.0% | |
| ! | TTTGGTATTTTCGTGACGTG+TGG | - | chr7_3:1192194-1192213 | Msa1088180:intron | 40.0% |
| ! | TTGGTATTTTCGTGACGTGT+GGG | - | chr7_3:1192195-1192214 | Msa1088180:intron | 40.0% |
| TGTGCTGTACGTGTAGAATT+TGG | - | chr7_3:1192323-1192342 | Msa1088180:intron | 40.0% | |
| GCGTAAAAAAGATCCCAGTT+TGG | - | chr7_3:1192429-1192448 | Msa1088180:intron | 40.0% | |
| AAAGATCCCAGTTTGGTAGA+AGG | - | chr7_3:1192436-1192455 | Msa1088180:intron | 40.0% | |
| CGTTCCTAATCTCTTCCTTT+AGG | - | chr7_3:1192659-1192678 | Msa1088180:CDS | 40.0% | |
| TCCTAATCTCTTCCTTTAGG+AGG | - | chr7_3:1192662-1192681 | Msa1088180:CDS | 40.0% | |
| TCCTCCTAAAGGAAGAGATT+AGG | + | chr7_3:1192666-1192685 | None:intergenic | 40.0% | |
| ! | TAATCTCTTCCTTTAGGAGG+AGG | - | chr7_3:1192665-1192684 | Msa1088180:CDS | 40.0% |
| ATTCAACAACCTCCTCCTAA+AGG | + | chr7_3:1192677-1192696 | None:intergenic | 40.0% | |
| TTGATACTGCAAAGTCTGTC+AGG | - | chr7_3:1192868-1192887 | Msa1088180:intron | 40.0% | |
| CATAATGAATTTGGGAGGAG+AGG | + | chr7_3:1192938-1192957 | None:intergenic | 40.0% | |
| ACTTAGGTGTCTTGTGGTAA+AGG | - | chr7_3:1193071-1193090 | Msa1088180:intron | 40.0% | |
| GTAATGTAGTCCTTTCGGTT+TGG | - | chr7_3:1193118-1193137 | Msa1088180:intron | 40.0% | |
| TGAGACCATTGTAGCTCATT+TGG | - | chr7_3:1193231-1193250 | Msa1088180:CDS | 40.0% | |
| ! | TCTCATGGTTGGCCAATATT+TGG | - | chr7_3:1193283-1193302 | Msa1088180:intron | 40.0% |
| ! | AAGTTTTCTCTGCGAAGTAG+AGG | - | chr7_3:1193360-1193379 | Msa1088180:intron | 40.0% |
| GTGAGACAATTCCAATGTGT+TGG | - | chr7_3:1193382-1193401 | Msa1088180:intron | 40.0% | |
| ! | GACAGTTTGAGGTGAAAACT+TGG | + | chr7_3:1193477-1193496 | None:intergenic | 40.0% |
| ACCACAATATGTATCACACG+TGG | + | chr7_3:1193735-1193754 | None:intergenic | 40.0% | |
| ACGTGTGATACATATTGTGG+TGG | - | chr7_3:1193734-1193753 | Msa1088180:intron | 40.0% | |
| CGTGTGATACATATTGTGGT+GGG | - | chr7_3:1193735-1193754 | Msa1088180:intron | 40.0% | |
| !! | TTGAAGTCACATTTGGTGCA+TGG | - | chr7_3:1193786-1193805 | Msa1088180:CDS | 40.0% |
| ! | TTTGGTGCATGGTGTTCTAT+AGG | - | chr7_3:1193797-1193816 | Msa1088180:intron | 40.0% |
| TTGGTGCATGGTGTTCTATA+GGG | - | chr7_3:1193798-1193817 | Msa1088180:intron | 40.0% | |
| TCACCATAAGACATGCTAAC+TGG | + | chr7_3:1193896-1193915 | None:intergenic | 40.0% | |
| !!! | TGCGTTGACTTTGTTTTGGT+GGG | - | chr7_3:1194085-1194104 | Msa1088180:intron | 40.0% |
| !! | AGGAAGGAAGAAAGTACCTG+CGG | + | chr7_3:1189755-1189774 | None:intergenic | 45.0% |
| AAACGGAGAAAGGAGAAGGA+AGG | + | chr7_3:1189771-1189790 | None:intergenic | 45.0% | |
| ACGAAAACGGAGAAAGGAGA+AGG | + | chr7_3:1189775-1189794 | None:intergenic | 45.0% | |
| ! | GAACATGAAGAGCACATTCG+TGG | + | chr7_3:1189922-1189941 | None:intergenic | 45.0% |
| GGAGGCTAAACTTGAAGAGT+TGG | - | chr7_3:1190393-1190412 | Msa1088180:intron | 45.0% | |
| GGTTCCATCACAATGAGCAT+AGG | + | chr7_3:1190766-1190785 | None:intergenic | 45.0% | |
| CCATCCCTTTGTCTAATGAG+GGG | - | chr7_3:1190824-1190843 | Msa1088180:CDS | 45.0% | |
| CCTTCCCCTCATTAGACAAA+GGG | + | chr7_3:1190831-1190850 | None:intergenic | 45.0% | |
| CCTTTGTCTAATGAGGGGAA+GGG | - | chr7_3:1190829-1190848 | Msa1088180:CDS | 45.0% | |
| CTTTGTCTAATGAGGGGAAG+GGG | - | chr7_3:1190830-1190849 | Msa1088180:CDS | 45.0% | |
| GTAGACACCGACATGAATCT+AGG | - | chr7_3:1190947-1190966 | Msa1088180:CDS | 45.0% | |
| GTGTTGCAGCAATTGGAACT+TGG | - | chr7_3:1191171-1191190 | Msa1088180:intron | 45.0% | |
| ACCTATATGCCAACGGTAGA+GGG | - | chr7_3:1191421-1191440 | Msa1088180:intron | 45.0% | |
| TGGTATCTTCAACTCGCTGT+AGG | + | chr7_3:1191456-1191475 | None:intergenic | 45.0% | |
| ! | ACAGCGAGTTGAAGATACCA+TGG | - | chr7_3:1191456-1191475 | Msa1088180:intron | 45.0% |
| AGGCTCCTATGAACTGTGAA+AGG | - | chr7_3:1191708-1191727 | Msa1088180:intron | 45.0% | |
| GAGCCTGACTTTATTGGTCA+AGG | + | chr7_3:1191815-1191834 | None:intergenic | 45.0% | |
| !!! | TAACTGCCATGGGGGTATTT+TGG | - | chr7_3:1192176-1192195 | Msa1088180:intron | 45.0% |
| TAACGCTTCACATGTGATCC+TGG | - | chr7_3:1192608-1192627 | Msa1088180:intron | 45.0% | |
| ATATGTTGCTGTGCTTTGCC+AGG | + | chr7_3:1192629-1192648 | None:intergenic | 45.0% | |
| AAGCACACTTAGGTGTCTTG+TGG | - | chr7_3:1193065-1193084 | Msa1088180:intron | 45.0% | |
| TAACACATCCGTACAGCACA+AGG | + | chr7_3:1193435-1193454 | None:intergenic | 45.0% | |
| ! | ATTACTAGAGTGACTCGGGT+TGG | - | chr7_3:1193677-1193696 | Msa1088180:intron | 45.0% |
| ! | TTACTAGAGTGACTCGGGTT+GGG | - | chr7_3:1193678-1193697 | Msa1088180:intron | 45.0% |
| GCCACGTGTGATACATATTG+TGG | - | chr7_3:1193731-1193750 | Msa1088180:intron | 45.0% | |
| ! | TACATATTGTGGTGGGAGTG+AGG | - | chr7_3:1193742-1193761 | Msa1088180:intron | 45.0% |
| CAGCCAGTTAGCATGTCTTA+TGG | - | chr7_3:1193890-1193909 | Msa1088180:intron | 45.0% | |
| !!! | GTGCGTTGACTTTGTTTTGG+TGG | - | chr7_3:1194084-1194103 | Msa1088180:intron | 45.0% |
| CCATAATGAGCAACGAGGTT+GGG | + | chr7_3:1194255-1194274 | None:intergenic | 45.0% | |
| TCCATAATGAGCAACGAGGT+TGG | + | chr7_3:1194256-1194275 | None:intergenic | 45.0% | |
| GGTATCCATAATGAGCAACG+AGG | + | chr7_3:1194260-1194279 | None:intergenic | 45.0% | |
| AGGAAACTGACATGCTGAAC+TGG | - | chr7_3:1194366-1194385 | Msa1088180:intron | 45.0% | |
| CTCGCGAAAACTCGTAACGA+TGG | - | chr7_3:1190260-1190279 | Msa1088180:intron | 50.0% | |
| ! | TGCTCATTGTGATGGAACCC+TGG | - | chr7_3:1190767-1190786 | Msa1088180:intron | 50.0% |
| CCCCTCATTAGACAAAGGGA+TGG | + | chr7_3:1190827-1190846 | None:intergenic | 50.0% | |
| CCCTTTGTCTAATGAGGGGA+AGG | - | chr7_3:1190828-1190847 | Msa1088180:CDS | 50.0% | |
| CCCTTCCCCTCATTAGACAA+AGG | + | chr7_3:1190832-1190851 | None:intergenic | 50.0% | |
| AATGACTTCGCCGCACTACT+TGG | - | chr7_3:1190991-1191010 | Msa1088180:intron | 50.0% | |
| ! | GAAGTCGATTCTGAAGGCCA+TGG | - | chr7_3:1191212-1191231 | Msa1088180:intron | 50.0% |
| CTCATCTTGTTCCCCCTTTC+AGG | - | chr7_3:1191311-1191330 | Msa1088180:CDS | 50.0% | |
| GACCTATATGCCAACGGTAG+AGG | - | chr7_3:1191420-1191439 | Msa1088180:intron | 50.0% | |
| CATGAAATGCCCTCTACCGT+TGG | + | chr7_3:1191433-1191452 | None:intergenic | 50.0% | |
| GGAGGGGACTATGACGTTAA+AGG | - | chr7_3:1191519-1191538 | Msa1088180:intron | 50.0% | |
| AAATGATGTTGGGGAGCGAG+CGG | + | chr7_3:1192143-1192162 | None:intergenic | 50.0% | |
| CCGTTCGGCAAATGATGTTG+GGG | + | chr7_3:1192152-1192171 | None:intergenic | 50.0% | |
| CCCCAACATCATTTGCCGAA+CGG | - | chr7_3:1192149-1192168 | Msa1088180:intron | 50.0% | |
| GCCGTTCGGCAAATGATGTT+GGG | + | chr7_3:1192153-1192172 | None:intergenic | 50.0% | |
| TGCCGTTCGGCAAATGATGT+TGG | + | chr7_3:1192154-1192173 | None:intergenic | 50.0% | |
| CATGGCAGTTAACTGCCGTT+CGG | + | chr7_3:1192167-1192186 | None:intergenic | 50.0% | |
| GAACGGCAGTTAACTGCCAT+GGG | - | chr7_3:1192166-1192185 | Msa1088180:intron | 50.0% | |
| AACGGCAGTTAACTGCCATG+GGG | - | chr7_3:1192167-1192186 | Msa1088180:intron | 50.0% | |
| GTGACGTGTGGGAGCAAAAA+TGG | - | chr7_3:1192206-1192225 | Msa1088180:intron | 50.0% | |
| !! | TGCAATGAGGACTTGCTGCA+TGG | + | chr7_3:1193009-1193028 | None:intergenic | 50.0% |
| GCAGCAAGTCCTCATTGCAA+TGG | - | chr7_3:1193010-1193029 | Msa1088180:intron | 50.0% | |
| ! | TACAGACTAGGACGTTGGCT+TGG | + | chr7_3:1193588-1193607 | None:intergenic | 50.0% |
| CAGCATACAGACTAGGACGT+TGG | + | chr7_3:1193593-1193612 | None:intergenic | 50.0% | |
| TTGCAGCTTGATCCTAGAGC+CGG | - | chr7_3:1194204-1194223 | Msa1088180:intron | 50.0% | |
| TCCTTAGCCAGAACCATCAC+CGG | + | chr7_3:1194226-1194245 | None:intergenic | 50.0% | |
| CCCAACCTCGTTGCTCATTA+TGG | - | chr7_3:1194252-1194271 | Msa1088180:CDS | 50.0% | |
| CAGAAGCAAGTGAACTCCGC+AGG | - | chr7_3:1189736-1189755 | Msa1088180:three_prime_UTR | 55.0% | |
| ACAGCCAACGCCAAGTAGTG+CGG | + | chr7_3:1191004-1191023 | None:intergenic | 55.0% | |
| GCCCTCTACCGTTGGCATAT+AGG | + | chr7_3:1191425-1191444 | None:intergenic | 55.0% | |
| !!! | AACTGCCGCTGGGGGTATTT+TGG | + | chr7_3:1192115-1192134 | None:intergenic | 55.0% |
| CGAACGGCAGTTAACTGCCA+TGG | - | chr7_3:1192165-1192184 | Msa1088180:intron | 55.0% | |
| ACGGCAGTTAACTGCCATGG+GGG | - | chr7_3:1192168-1192187 | Msa1088180:intron | 55.0% | |
| CTTGATCCTAGAGCCGGTGA+TGG | - | chr7_3:1194210-1194229 | Msa1088180:intron | 55.0% | |
| ! | TTGTGATGGAACCCTGGCCC+TGG | - | chr7_3:1190773-1190792 | Msa1088180:intron | 60.0% |
| CATAACTCACGCCAGGGCCA+GGG | + | chr7_3:1190787-1190806 | None:intergenic | 60.0% | |
| ACATAACTCACGCCAGGGCC+AGG | + | chr7_3:1190788-1190807 | None:intergenic | 60.0% | |
| TTCGCCGCACTACTTGGCGT+TGG | - | chr7_3:1190997-1191016 | Msa1088180:intron | 60.0% | |
| AGCGGCAGTTAACTGCCGCT+GGG | + | chr7_3:1192125-1192144 | None:intergenic | 60.0% | |
| !! | CCAGAACCATCACCGGCTCT+AGG | + | chr7_3:1194219-1194238 | None:intergenic | 60.0% |
| ! | CCTAGAGCCGGTGATGGTTC+TGG | - | chr7_3:1194216-1194235 | Msa1088180:intron | 60.0% |
| !! | GCCGGTGATGGTTCTGGCTA+AGG | - | chr7_3:1194222-1194241 | Msa1088180:intron | 60.0% |
| CGGCAGTTAACTGCCGCTGG+GGG | + | chr7_3:1192123-1192142 | None:intergenic | 65.0% | |
| GCGGCAGTTAACTGCCGCTG+GGG | + | chr7_3:1192124-1192143 | None:intergenic | 65.0% | |
| GAGCGGCAGTTAACTGCCGC+TGG | + | chr7_3:1192126-1192145 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 1189668 | 1194521 | 1189668 | ID=Msa1088180;Name=Msa1088180 |
| chr7_3 | mRNA | 1189668 | 1194521 | 1189668 | ID=Msa1088180-mRNA-1;Parent=Msa1088180;Name=Msa1088180-mRNA-1;_AED=0.06;_eAED=0.06;_QI=64|0.90|0.91|1|0.81|0.83|12|279|391 |
| chr7_3 | exon | 1189668 | 1190069 | 1189668 | ID=Msa1088180-mRNA-1:exon:503;Parent=Msa1088180-mRNA-1 |
| chr7_3 | exon | 1190808 | 1190985 | 1190808 | ID=Msa1088180-mRNA-1:exon:502;Parent=Msa1088180-mRNA-1 |
| chr7_3 | exon | 1191080 | 1191175 | 1191080 | ID=Msa1088180-mRNA-1:exon:501;Parent=Msa1088180-mRNA-1 |
| chr7_3 | exon | 1191300 | 1191355 | 1191300 | ID=Msa1088180-mRNA-1:exon:500;Parent=Msa1088180-mRNA-1 |
| chr7_3 | exon | 1192640 | 1192856 | 1192640 | ID=Msa1088180-mRNA-1:exon:499;Parent=Msa1088180-mRNA-1 |
| chr7_3 | exon | 1192939 | 1193009 | 1192939 | ID=Msa1088180-mRNA-1:exon:498;Parent=Msa1088180-mRNA-1 |
| chr7_3 | exon | 1193207 | 1193287 | 1193207 | ID=Msa1088180-mRNA-1:exon:497;Parent=Msa1088180-mRNA-1 |
| chr7_3 | exon | 1193745 | 1193809 | 1193745 | ID=Msa1088180-mRNA-1:exon:496;Parent=Msa1088180-mRNA-1 |
| chr7_3 | exon | 1193908 | 1194009 | 1193908 | ID=Msa1088180-mRNA-1:exon:495;Parent=Msa1088180-mRNA-1 |
| chr7_3 | exon | 1194090 | 1194153 | 1194090 | ID=Msa1088180-mRNA-1:exon:494;Parent=Msa1088180-mRNA-1 |
| chr7_3 | exon | 1194246 | 1194342 | 1194246 | ID=Msa1088180-mRNA-1:exon:493;Parent=Msa1088180-mRNA-1 |
| chr7_3 | exon | 1194432 | 1194521 | 1194432 | ID=Msa1088180-mRNA-1:exon:492;Parent=Msa1088180-mRNA-1 |
| chr7_3 | five_prime_UTR | 1194458 | 1194521 | 1194458 | ID=Msa1088180-mRNA-1:five_prime_utr;Parent=Msa1088180-mRNA-1 |
| chr7_3 | CDS | 1194432 | 1194457 | 1194432 | ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1 |
| chr7_3 | CDS | 1194246 | 1194342 | 1194246 | ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1 |
| chr7_3 | CDS | 1194090 | 1194153 | 1194090 | ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1 |
| chr7_3 | CDS | 1193908 | 1194009 | 1193908 | ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1 |
| chr7_3 | CDS | 1193745 | 1193809 | 1193745 | ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1 |
| chr7_3 | CDS | 1193207 | 1193287 | 1193207 | ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1 |
| chr7_3 | CDS | 1192939 | 1193009 | 1192939 | ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1 |
| chr7_3 | CDS | 1192640 | 1192856 | 1192640 | ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1 |
| chr7_3 | CDS | 1191300 | 1191355 | 1191300 | ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1 |
| chr7_3 | CDS | 1191080 | 1191175 | 1191080 | ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1 |
| chr7_3 | CDS | 1190808 | 1190985 | 1190808 | ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1 |
| chr7_3 | CDS | 1189947 | 1190069 | 1189947 | ID=Msa1088180-mRNA-1:cds;Parent=Msa1088180-mRNA-1 |
| chr7_3 | three_prime_UTR | 1189668 | 1189946 | 1189668 | ID=Msa1088180-mRNA-1:three_prime_utr;Parent=Msa1088180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
