Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371110 | XP_024635521.1 | 95.443 | 395 | 13 | 3 | 1 | 390 | 1 | 395 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371110 | A0A396IUB9 | 95.443 | 395 | 13 | 3 | 1 | 390 | 1 | 395 | 0.0 | 749 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094120 | Msa0371110 | 0.808225 | 3.437949e-50 | -8.615850e-47 |
| Msa0225740 | Msa0371110 | 0.814677 | 1.364091e-51 | -8.615850e-47 |
| Msa0371110 | Msa0467300 | 0.803792 | 2.944062e-49 | -8.615850e-47 |
| Msa0371110 | Msa0616220 | 0.828770 | 7.474109e-55 | -8.615850e-47 |
| Msa0371110 | Msa0691980 | 0.813576 | 2.386466e-51 | -8.615850e-47 |
| Msa0371110 | Msa0699550 | 0.821709 | 3.495198e-53 | -8.615850e-47 |
| Msa0371110 | Msa1088180 | 0.926154 | 6.920786e-91 | -8.615850e-47 |
| Msa0371110 | Msa1370010 | 0.812463 | 4.185871e-51 | -8.615850e-47 |
| Msa0371110 | Msa1459380 | 0.802243 | 6.152741e-49 | -8.615850e-47 |
| Msa0260610 | Msa0371110 | 0.801072 | 1.069882e-48 | -8.615850e-47 |
| Msa0292400 | Msa0371110 | 0.823003 | 1.750383e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371110 | MtrunA17_Chr3g0121521 | 95.443 | 395 | 13 | 3 | 1 | 390 | 1 | 395 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0371110 | AT3G23910.1 | 40.759 | 395 | 212 | 6 | 6 | 378 | 14 | 408 | 1.69e-86 | 269 |
| Msa0371110 | AT3G24255.2 | 38.257 | 413 | 226 | 8 | 6 | 389 | 14 | 426 | 1.73e-78 | 248 |
| Msa0371110 | AT3G24255.1 | 40.988 | 344 | 187 | 3 | 62 | 389 | 401 | 744 | 1.52e-72 | 241 |
| Msa0371110 | AT3G24255.7 | 40.988 | 344 | 187 | 3 | 62 | 389 | 483 | 826 | 1.14e-71 | 240 |
| Msa0371110 | AT3G23910.2 | 45.276 | 254 | 123 | 3 | 141 | 378 | 50 | 303 | 6.04e-71 | 225 |
| Msa0371110 | AT3G24255.8 | 43.019 | 265 | 135 | 3 | 141 | 389 | 50 | 314 | 3.51e-68 | 218 |
| Msa0371110 | AT3G24255.6 | 36.294 | 394 | 218 | 9 | 6 | 372 | 14 | 401 | 8.40e-65 | 212 |
Find 90 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATTCACATTTGAAATT+TGG | 0.100664 | 3_1:-69031182 | Msa0371110:five_prime_UTR |
| AACTTCAAACATACAGATTT+TGG | 0.181040 | 3_1:+69026587 | None:intergenic |
| AAGGGTTTGATTCTTCTTCT+TGG | 0.207084 | 3_1:+69030992 | None:intergenic |
| CCCAACCTCGTTGCTCATTA+TGG | 0.220572 | 3_1:-69026616 | Msa0371110:three_prime_UTR |
| GCAATTGGAACTTGGGAATA+AGG | 0.235791 | 3_1:-69029690 | Msa0371110:CDS |
| CATGAATCTAGGCGAAAATT+TGG | 0.266114 | 3_1:-69029911 | Msa0371110:CDS |
| TATGACGTTAAAGGATATTC+AGG | 0.272206 | 3_1:-69029341 | Msa0371110:intron |
| TCTCATGGTTGGCCAATATT+TGG | 0.273858 | 3_1:-69027585 | Msa0371110:CDS |
| TGAATTGAATTACCGAAATC+TGG | 0.279388 | 3_1:+69030779 | None:intergenic |
| TCATACTCGGCAAAATATAC+TGG | 0.307505 | 3_1:-69026725 | Msa0371110:CDS |
| TATGAATCAACGGAAGAAAA+TGG | 0.321391 | 3_1:+69031157 | None:intergenic |
| TGAGACCATTGTAGCTCATT+TGG | 0.323304 | 3_1:-69027637 | Msa0371110:CDS |
| TCTTTACAAAATCCAGATTT+CGG | 0.332313 | 3_1:-69030791 | Msa0371110:intron |
| CCTAGAGCCGGTGATGGTTC+TGG | 0.353151 | 3_1:-69026652 | Msa0371110:CDS |
| AGATGCTTACATAGAGCATT+TGG | 0.354127 | 3_1:-69030691 | Msa0371110:CDS |
| TTTCTTCCGTTGATTCATAA+TGG | 0.359789 | 3_1:-69031153 | Msa0371110:exon |
| TCATCCACGTATATATCATT+TGG | 0.371803 | 3_1:+69028028 | None:intergenic |
| CACATTCGTGGAGTAAATCT+TGG | 0.374860 | 3_1:+69030962 | None:intergenic |
| AGAAGAGAGATCAGAGAATT+CGG | 0.378958 | 3_1:+69030811 | None:intergenic |
| GGAGGGGACTATGACGTTAA+AGG | 0.382729 | 3_1:-69029350 | Msa0371110:CDS |
| CAATCAATAACTCATGATTC+AGG | 0.388820 | 3_1:+69029380 | None:intergenic |
| TAGATATTCTCTTGAATACT+TGG | 0.402244 | 3_1:-69027667 | Msa0371110:CDS |
| ATTGTAGCTCATTTGGTTAG+AGG | 0.418807 | 3_1:-69027630 | Msa0371110:CDS |
| TATGTAACATTCAAGTTGTC+AGG | 0.423398 | 3_1:-69026477 | Msa0371110:three_prime_UTR |
| TTCAACGGAGAACCAAATAT+TGG | 0.430959 | 3_1:+69027573 | None:intergenic |
| TTCAATCTCTTTAGCTACAT+TGG | 0.435257 | 3_1:+69030635 | None:intergenic |
| AGGAAACTGACATGCTGAAC+TGG | 0.439381 | 3_1:-69026502 | Msa0371110:three_prime_UTR |
| TGAGTTATTGATTGAAGTGT+TGG | 0.448149 | 3_1:-69029371 | Msa0371110:CDS |
| ACTTAGGTGTCTTGTGGTAA+AGG | 0.448895 | 3_1:-69027797 | Msa0371110:CDS |
| CCATAATGAGCAACGAGGTT+GGG | 0.456774 | 3_1:+69026616 | None:intergenic |
| GGAGGCTAAACTTGAAGAGT+TGG | 0.457166 | 3_1:-69030476 | Msa0371110:CDS |
| GTTGAAGCTAATATCAATCA+AGG | 0.459869 | 3_1:-69027556 | Msa0371110:CDS |
| GCCCTCTACCGTTGGCATAT+AGG | 0.460761 | 3_1:+69029447 | None:intergenic |
| GCCGGTGATGGTTCTGGCTA+AGG | 0.462788 | 3_1:-69026646 | Msa0371110:exon |
| TTGACAGGTCTAAAAGTGAT+TGG | 0.465270 | 3_1:-69029505 | Msa0371110:CDS |
| TTGATACTGCAAAGTCTGTC+AGG | 0.467306 | 3_1:-69028000 | Msa0371110:intron |
| GACCTATATGCCAACGGTAG+AGG | 0.482139 | 3_1:-69029449 | Msa0371110:CDS |
| TTGATTGATATTAGCTTCAA+CGG | 0.489420 | 3_1:+69027558 | None:intergenic |
| TTACATAGAGCATTTGGAAA+AGG | 0.489688 | 3_1:-69030685 | Msa0371110:CDS |
| TCCATAATGAGCAACGAGGT+TGG | 0.494291 | 3_1:+69026615 | None:intergenic |
| GTAGACACCGACATGAATCT+AGG | 0.497575 | 3_1:-69029922 | Msa0371110:CDS |
| GATAAATGCTGAGGCTAATG+AGG | 0.501176 | 3_1:-69029962 | Msa0371110:CDS |
| TGAGGGAATTTCTTCAATGC+TGG | 0.506990 | 3_1:-69029944 | Msa0371110:CDS |
| TAAAGGATGCTAACAAATCA+AGG | 0.518759 | 3_1:-69027780 | Msa0371110:intron |
| ACATTCGTGGAGTAAATCTT+GGG | 0.522932 | 3_1:+69030963 | None:intergenic |
| AATCTCTTTAGCTACATTGG+TGG | 0.527069 | 3_1:+69030638 | None:intergenic |
| TATTGATTGAAGTGTTGGAG+GGG | 0.531809 | 3_1:-69029366 | Msa0371110:CDS |
| GTGTTGCAGCAATTGGAACT+TGG | 0.533115 | 3_1:-69029698 | Msa0371110:intron |
| CCAGAACCATCACCGGCTCT+AGG | 0.534271 | 3_1:+69026652 | None:intergenic |
| CAGATTGACAATGCATTGAC+AGG | 0.537752 | 3_1:-69029520 | Msa0371110:CDS |
| GTTATTGATTGAAGTGTTGG+AGG | 0.538382 | 3_1:-69029368 | Msa0371110:CDS |
| ACCTATATGCCAACGGTAGA+GGG | 0.544751 | 3_1:-69029448 | Msa0371110:CDS |
| CATACTCGGCAAAATATACT+GGG | 0.547411 | 3_1:-69026724 | Msa0371110:CDS |
| TTCTTTGAATCATATTACAT+CGG | 0.556460 | 3_1:-69030449 | Msa0371110:CDS |
| TGGTATCTTCAACTCGCTGT+AGG | 0.556765 | 3_1:+69029416 | None:intergenic |
| GAACATGAAGAGCACATTCG+TGG | 0.557107 | 3_1:+69030950 | None:intergenic |
| TCCTTAGCCAGAACCATCAC+CGG | 0.568413 | 3_1:+69026645 | None:intergenic |
| TTTGAATCATATTACATCGG+AGG | 0.568500 | 3_1:-69030446 | Msa0371110:intron |
| CATGAAATGCCCTCTACCGT+TGG | 0.570086 | 3_1:+69029439 | None:intergenic |
| ATTCAGGATAGATGCATCCA+TGG | 0.576247 | 3_1:+69029396 | None:intergenic |
| GAATCTAGGCGAAAATTTGG+AGG | 0.576882 | 3_1:-69029908 | Msa0371110:intron |
| GTAAATCTTGGGAATCTGAA+GGG | 0.577091 | 3_1:+69030974 | None:intergenic |
| ACATAAAGTTGTCTCATGGT+TGG | 0.580003 | 3_1:-69027596 | Msa0371110:CDS |
| CTTGATCCTAGAGCCGGTGA+TGG | 0.581110 | 3_1:-69026658 | Msa0371110:CDS |
| AGTATGAGTATCTAATGAGT+TGG | 0.582228 | 3_1:+69026741 | None:intergenic |
| AGTAAATCTTGGGAATCTGA+AGG | 0.582351 | 3_1:+69030973 | None:intergenic |
| TTGCAGCTTGATCCTAGAGC+CGG | 0.582505 | 3_1:-69026664 | Msa0371110:CDS |
| TCTAACCAAATGAGCTACAA+TGG | 0.590969 | 3_1:+69027632 | None:intergenic |
| CAGAAGCAAGTGAACTCCGC+AGG | 0.591758 | 3_1:-69031130 | Msa0371110:intron |
| GAATTATACTAAGCACACTT+AGG | 0.592429 | 3_1:-69027813 | Msa0371110:CDS |
| AAGATAATTAAGTGAATGTG+AGG | 0.596019 | 3_1:+69026553 | None:intergenic |
| TTGTATTAACCATTGCAATG+AGG | 0.596339 | 3_1:+69027849 | None:intergenic |
| CTTCTGCCATTATGAATCAA+CGG | 0.598795 | 3_1:+69031147 | None:intergenic |
| GAAGTCGATTCTGAAGGCCA+TGG | 0.604104 | 3_1:-69029657 | Msa0371110:CDS |
| TGTTGCAGCAATTGGAACTT+GGG | 0.607267 | 3_1:-69029697 | Msa0371110:intron |
| TTGAAGCTAATATCAATCAA+GGG | 0.620980 | 3_1:-69027555 | Msa0371110:CDS |
| GCAGCAAGTCCTCATTGCAA+TGG | 0.623103 | 3_1:-69027858 | Msa0371110:intron |
| CTTACAATGAAAAGACTCCA+TGG | 0.625561 | 3_1:+69029640 | None:intergenic |
| ATAAATGCTGAGGCTAATGA+GGG | 0.636629 | 3_1:-69029961 | Msa0371110:CDS |
| TGAAATGAAGTCGATTCTGA+AGG | 0.636722 | 3_1:-69029663 | Msa0371110:CDS |
| TTATTGATTGAAGTGTTGGA+GGG | 0.637105 | 3_1:-69029367 | Msa0371110:CDS |
| AAGCACACTTAGGTGTCTTG+TGG | 0.641823 | 3_1:-69027803 | Msa0371110:CDS |
| CTCGCGAAAACTCGTAACGA+TGG | 0.646362 | 3_1:-69030609 | Msa0371110:intron |
| ACTCATTAGATACTCATACT+CGG | 0.649710 | 3_1:-69026738 | Msa0371110:CDS |
| GCATACATAAAGTTGTCTCA+TGG | 0.652475 | 3_1:-69027600 | Msa0371110:CDS |
| ACAGCGAGTTGAAGATACCA+TGG | 0.659448 | 3_1:-69029413 | Msa0371110:CDS |
| ATAGGAGCAGATAAATGCTG+AGG | 0.674029 | 3_1:-69029971 | Msa0371110:intron |
| TTTGCAGACCTATATGCCAA+CGG | 0.681871 | 3_1:-69029455 | Msa0371110:CDS |
| TCATTCTTAACAGAACACAG+TGG | 0.739164 | 3_1:-69030846 | Msa0371110:intron |
| GGTATCCATAATGAGCAACG+AGG | 0.806237 | 3_1:+69026611 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTAAAATAAAATAAA+TGG | - | chr3_1:69030651-69030670 | Msa0371110:CDS | 0.0% |
| !!! | ATTTTTAAAATAAAATAAAT+GGG | - | chr3_1:69030652-69030671 | Msa0371110:CDS | 0.0% |
| !! | ATTGAATAACAAAAACAAAA+CGG | + | chr3_1:69026822-69026841 | None:intergenic | 15.0% |
| !! | AAGAATTAAGAAAATTGATA+TGG | - | chr3_1:69027264-69027283 | Msa0371110:intron | 15.0% |
| !!! | TAACTTAATGTTTTTATATG+TGG | + | chr3_1:69029434-69029453 | None:intergenic | 15.0% |
| !!! | GTTAACTTTAATTCTTTTAA+GGG | - | chr3_1:69030730-69030749 | Msa0371110:intron | 15.0% |
| !! | TTTGTTTCACATAATAACTA+TGG | - | chr3_1:69027003-69027022 | Msa0371110:intron | 20.0% |
| !!! | TTTTTCAGATTCTATTCTTT+TGG | - | chr3_1:69027070-69027089 | Msa0371110:intron | 20.0% |
| !! | TTCTTTGAATCATATTACAT+CGG | - | chr3_1:69027118-69027137 | Msa0371110:intron | 20.0% |
| !! | ATAAATACTTACTGTTAACT+TGG | + | chr3_1:69027318-69027337 | None:intergenic | 20.0% |
| !! | AAAAACGTGTTAAATACTTA+GGG | - | chr3_1:69027358-69027377 | Msa0371110:intron | 20.0% |
| !!! | TCTTTTACAGAAAATCATTT+TGG | - | chr3_1:69027788-69027807 | Msa0371110:CDS | 20.0% |
| !! | ATTCATTCTGATATTCTATT+TGG | - | chr3_1:69028557-69028576 | Msa0371110:intron | 20.0% |
| !!! | CTTATTCTGCATTTTTTTTT+GGG | - | chr3_1:69028651-69028670 | Msa0371110:intron | 20.0% |
| !! | GAAAGGGTAATTATAATATT+AGG | - | chr3_1:69029252-69029271 | Msa0371110:intron | 20.0% |
| !!! | TGATGATTTGTTAACTTTTT+TGG | - | chr3_1:69029497-69029516 | Msa0371110:CDS | 20.0% |
| !!! | CTTTTTTGGTTTTGTTATTT+AGG | - | chr3_1:69029511-69029530 | Msa0371110:CDS | 20.0% |
| !! | GGGTTTAATGTTATTAAATT+TGG | - | chr3_1:69029838-69029857 | Msa0371110:intron | 20.0% |
| !!! | TCATTTCTTTTGATAATAAC+TGG | - | chr3_1:69030245-69030264 | Msa0371110:intron | 20.0% |
| !!! | GGTTAACTTTAATTCTTTTA+AGG | - | chr3_1:69030729-69030748 | Msa0371110:intron | 20.0% |
| !! | CATTATAAATAATGCAGTAT+TGG | - | chr3_1:69030753-69030772 | Msa0371110:intron | 20.0% |
| !! | CACAATTCACATTTGAAATT+TGG | - | chr3_1:69026385-69026404 | Msa0371110:three_prime_UTR | 25.0% |
| ! | TCTTTACAAAATCCAGATTT+CGG | - | chr3_1:69026776-69026795 | Msa0371110:intron | 25.0% |
| !!! | AATTGATATGGTGTTATGTT+CGG | - | chr3_1:69027276-69027295 | Msa0371110:intron | 25.0% |
| ! | GAAAAACGTGTTAAATACTT+AGG | - | chr3_1:69027357-69027376 | Msa0371110:intron | 25.0% |
| ! | AAAACGTGTTAAATACTTAG+GGG | - | chr3_1:69027359-69027378 | Msa0371110:intron | 25.0% |
| !!! | TTAAATACTTAGGGGTATTT+TGG | - | chr3_1:69027367-69027386 | Msa0371110:intron | 25.0% |
| ! | ATGTAGTTGAAAATTTCTCA+AGG | - | chr3_1:69027404-69027423 | Msa0371110:intron | 25.0% |
| ! | TGTAGTTGAAAATTTCTCAA+GGG | - | chr3_1:69027405-69027424 | Msa0371110:intron | 25.0% |
| !!! | TTCTCAAGGGTTTTATATAT+AGG | - | chr3_1:69027418-69027437 | Msa0371110:intron | 25.0% |
| !!! | TCTCAAGGGTTTTATATATA+GGG | - | chr3_1:69027419-69027438 | Msa0371110:intron | 25.0% |
| !!! | CAGTCGTTTTTGATAATTAT+AGG | - | chr3_1:69027578-69027597 | Msa0371110:CDS | 25.0% |
| !! | GAATTAGTTTCAAACAAATG+TGG | - | chr3_1:69027738-69027757 | Msa0371110:intron | 25.0% |
| !! | TTTACAGAAAATCATTTTGG+TGG | - | chr3_1:69027791-69027810 | Msa0371110:CDS | 25.0% |
| !! | CTTTTCATTGTAAGTTCAAA+TGG | - | chr3_1:69027936-69027955 | Msa0371110:intron | 25.0% |
| ! | TCAGATAATCATCTATTCTA+TGG | - | chr3_1:69027982-69028001 | Msa0371110:intron | 25.0% |
| ! | AAACAAGTCAAAGAATGAAA+CGG | + | chr3_1:69028267-69028286 | None:intergenic | 25.0% |
| ! | TTGTCAAATCTAATGAACAA+TGG | + | chr3_1:69028297-69028316 | None:intergenic | 25.0% |
| !!! | GCTTATTCTGCATTTTTTTT+TGG | - | chr3_1:69028650-69028669 | Msa0371110:intron | 25.0% |
| !! | TTTTACGCATCATTACATAT+TGG | + | chr3_1:69029116-69029135 | None:intergenic | 25.0% |
| ! | AACAGCAAAATATGATGTTA+AGG | + | chr3_1:69029204-69029223 | None:intergenic | 25.0% |
| ! | TCATGTAGAAAACTTATGAA+AGG | - | chr3_1:69029235-69029254 | Msa0371110:intron | 25.0% |
| ! | CATGTAGAAAACTTATGAAA+GGG | - | chr3_1:69029236-69029255 | Msa0371110:intron | 25.0% |
| ! | ATTATAATATTAGGTGACGA+AGG | - | chr3_1:69029261-69029280 | Msa0371110:intron | 25.0% |
| !! | TTTTCCAAATGATATATACG+TGG | - | chr3_1:69029535-69029554 | Msa0371110:CDS | 25.0% |
| !!! | TTTCCTTTTTCTCTTTGTTT+AGG | - | chr3_1:69029597-69029616 | Msa0371110:intron | 25.0% |
| ! | AAACCTAAACAAAGAGAAAA+AGG | + | chr3_1:69029603-69029622 | None:intergenic | 25.0% |
| ! | GCTTAGTTCATAATGAATTT+GGG | + | chr3_1:69029645-69029664 | None:intergenic | 25.0% |
| ! | TGCTTAGTTCATAATGAATT+TGG | + | chr3_1:69029646-69029665 | None:intergenic | 25.0% |
| ! | TAGATATTCTCTTGAATACT+TGG | - | chr3_1:69029900-69029919 | Msa0371110:intron | 25.0% |
| !! | TTGATTGATATTAGCTTCAA+CGG | + | chr3_1:69030012-69030031 | None:intergenic | 25.0% |
| ! | TTGAAGCTAATATCAATCAA+GGG | - | chr3_1:69030012-69030031 | Msa0371110:intron | 25.0% |
| !!! | ATTTTTTATAGCCAACACAT+TGG | + | chr3_1:69030095-69030114 | None:intergenic | 25.0% |
| ! | GTGTTAAAAAATTTCTCATG+TGG | - | chr3_1:69030148-69030167 | Msa0371110:intron | 25.0% |
| ! | AATTTAAGTAAGACAGTTTG+AGG | + | chr3_1:69030187-69030206 | None:intergenic | 25.0% |
| ! | AAATCATGTCTCATATGTTT+CGG | - | chr3_1:69030707-69030726 | Msa0371110:intron | 25.0% |
| !! | AACTTCAAACATACAGATTT+TGG | + | chr3_1:69030983-69031002 | None:intergenic | 25.0% |
| ! | AAGATAATTAAGTGAATGTG+AGG | + | chr3_1:69031017-69031036 | None:intergenic | 25.0% |
| !! | GATTTACTGCAATTTTAGAT+AGG | - | chr3_1:69031045-69031064 | Msa0371110:intron | 25.0% |
| TATGAATCAACGGAAGAAAA+TGG | + | chr3_1:69026413-69026432 | None:intergenic | 30.0% | |
| !! | TTTCTTCCGTTGATTCATAA+TGG | - | chr3_1:69026414-69026433 | Msa0371110:three_prime_UTR | 30.0% |
| TGAATTGAATTACCGAAATC+TGG | + | chr3_1:69026791-69026810 | None:intergenic | 30.0% | |
| ! | TTACATAGAGCATTTGGAAA+AGG | - | chr3_1:69026882-69026901 | Msa0371110:intron | 30.0% |
| TTCAATCTCTTTAGCTACAT+TGG | + | chr3_1:69026935-69026954 | None:intergenic | 30.0% | |
| ! | TTCAGATTCTATTCTTTTGG+AGG | - | chr3_1:69027073-69027092 | Msa0371110:intron | 30.0% |
| TTTGAATCATATTACATCGG+AGG | - | chr3_1:69027121-69027140 | Msa0371110:intron | 30.0% | |
| TTCTTGTGATTTAGTCATCT+GGG | + | chr3_1:69027249-69027268 | None:intergenic | 30.0% | |
| ATTCTTGTGATTTAGTCATC+TGG | + | chr3_1:69027250-69027269 | None:intergenic | 30.0% | |
| !! | AAGGGTTTTATATATAGGGA+AGG | - | chr3_1:69027423-69027442 | Msa0371110:intron | 30.0% |
| GTCAAAACATGATTACTGAA+TGG | + | chr3_1:69027559-69027578 | None:intergenic | 30.0% | |
| AAAAGAAGCAGAAAATGTTC+AGG | + | chr3_1:69027774-69027793 | None:intergenic | 30.0% | |
| CAATCAATAACTCATGATTC+AGG | + | chr3_1:69028190-69028209 | None:intergenic | 30.0% | |
| ! | TGAGTTATTGATTGAAGTGT+TGG | - | chr3_1:69028196-69028215 | Msa0371110:intron | 30.0% |
| !! | TTATTGATTGAAGTGTTGGA+GGG | - | chr3_1:69028200-69028219 | Msa0371110:intron | 30.0% |
| TATGACGTTAAAGGATATTC+AGG | - | chr3_1:69028226-69028245 | Msa0371110:intron | 30.0% | |
| AATTACGTTTAGCAATGATG+TGG | - | chr3_1:69028315-69028334 | Msa0371110:intron | 30.0% | |
| ! | CTTTTTCCTAACAGATTTGA+TGG | + | chr3_1:69028358-69028377 | None:intergenic | 30.0% |
| AGTTATAGTGTTAGCCATTT+AGG | - | chr3_1:69028382-69028401 | Msa0371110:intron | 30.0% | |
| !! | TTTCTTGTGGTATTTTGAAG+TGG | - | chr3_1:69028465-69028484 | Msa0371110:intron | 30.0% |
| !!! | CTCAATTGCTTTTAGTTTGA+TGG | - | chr3_1:69028530-69028549 | Msa0371110:intron | 30.0% |
| !!! | TTCTGCATTTTTTTTTGGGA+TGG | - | chr3_1:69028655-69028674 | Msa0371110:intron | 30.0% |
| !!! | TCTGCATTTTTTTTTGGGAT+GGG | - | chr3_1:69028656-69028675 | Msa0371110:intron | 30.0% |
| !! | AATTTGCTGGATATATCATG+TGG | - | chr3_1:69028694-69028713 | Msa0371110:intron | 30.0% |
| TGATTTATGGTCTGTATTCT+AGG | - | chr3_1:69028738-69028757 | Msa0371110:intron | 30.0% | |
| !! | AGTTTTAGTACCTTTGTTGT+AGG | - | chr3_1:69028978-69028997 | Msa0371110:intron | 30.0% |
| GTATTAATCACCTACAACAA+AGG | + | chr3_1:69028991-69029010 | None:intergenic | 30.0% | |
| ! | AATGTTTGGGGTAATGAAAT+TGG | + | chr3_1:69029169-69029188 | None:intergenic | 30.0% |
| ATTCCATCTAGAAATGTTTG+GGG | + | chr3_1:69029181-69029200 | None:intergenic | 30.0% | |
| GATTCCATCTAGAAATGTTT+GGG | + | chr3_1:69029182-69029201 | None:intergenic | 30.0% | |
| TCATCCACGTATATATCATT+TGG | + | chr3_1:69029542-69029561 | None:intergenic | 30.0% | |
| TAGTTCATAATGAATTTGGG+AGG | + | chr3_1:69029642-69029661 | None:intergenic | 30.0% | |
| TTGTATTAACCATTGCAATG+AGG | + | chr3_1:69029721-69029740 | None:intergenic | 30.0% | |
| GAATTATACTAAGCACACTT+AGG | - | chr3_1:69029754-69029773 | Msa0371110:intron | 30.0% | |
| TAAAGGATGCTAACAAATCA+AGG | - | chr3_1:69029787-69029806 | Msa0371110:intron | 30.0% | |
| GTTGAAGCTAATATCAATCA+AGG | - | chr3_1:69030011-69030030 | Msa0371110:intron | 30.0% | |
| AAACTACTACACAATTTCAG+TGG | + | chr3_1:69030221-69030240 | None:intergenic | 30.0% | |
| TAAAAAACAGCATACAGACT+AGG | + | chr3_1:69030299-69030318 | None:intergenic | 30.0% | |
| ! | CTATGATATAGACACTTTTG+AGG | + | chr3_1:69030324-69030343 | None:intergenic | 30.0% |
| TTACTATTACTAGAGTGACT+CGG | - | chr3_1:69030371-69030390 | Msa0371110:intron | 30.0% | |
| !!! | ACATGTTTTGAAGTCACATT+TGG | - | chr3_1:69030478-69030497 | Msa0371110:CDS | 30.0% |
| GTTCTATAGGGTAAAGTAAT+TGG | - | chr3_1:69030509-69030528 | Msa0371110:intron | 30.0% | |
| ! | TCTTTTAGACACGTGTAAAT+AGG | - | chr3_1:69030547-69030566 | Msa0371110:intron | 30.0% |
| AACTAACAGCAAAACATCAA+GGG | + | chr3_1:69030621-69030640 | None:intergenic | 30.0% | |
| AAACTAACAGCAAAACATCA+AGG | + | chr3_1:69030622-69030641 | None:intergenic | 30.0% | |
| AATCATGTCTCATATGTTTC+GGG | - | chr3_1:69030708-69030727 | Msa0371110:intron | 30.0% | |
| AGTATGAGTATCTAATGAGT+TGG | + | chr3_1:69030829-69030848 | None:intergenic | 30.0% | |
| ACTCATTAGATACTCATACT+CGG | - | chr3_1:69030829-69030848 | Msa0371110:CDS | 30.0% | |
| ! | TTCAAACATACAGATTTTGG+CGG | + | chr3_1:69030980-69030999 | None:intergenic | 30.0% |
| !! | TATGTAACATTCAAGTTGTC+AGG | - | chr3_1:69031090-69031109 | Msa0371110:intron | 30.0% |
| CTTCTGCCATTATGAATCAA+CGG | + | chr3_1:69026423-69026442 | None:intergenic | 35.0% | |
| AAGTGAGAGAGTAACGAAAA+CGG | + | chr3_1:69026489-69026508 | None:intergenic | 35.0% | |
| AGGTTTGGAGAATGTGATAA+CGG | + | chr3_1:69026518-69026537 | None:intergenic | 35.0% | |
| TGAAATTCGACTGAAAGGAA+AGG | + | chr3_1:69026538-69026557 | None:intergenic | 35.0% | |
| ATCTGTGAAATTCGACTGAA+AGG | + | chr3_1:69026543-69026562 | None:intergenic | 35.0% | |
| AAGGGTTTGATTCTTCTTCT+TGG | + | chr3_1:69026578-69026597 | None:intergenic | 35.0% | |
| GTAAATCTTGGGAATCTGAA+GGG | + | chr3_1:69026596-69026615 | None:intergenic | 35.0% | |
| AGTAAATCTTGGGAATCTGA+AGG | + | chr3_1:69026597-69026616 | None:intergenic | 35.0% | |
| ACATTCGTGGAGTAAATCTT+GGG | + | chr3_1:69026607-69026626 | None:intergenic | 35.0% | |
| GAAAATTGAAGAATGTGCGT+AGG | + | chr3_1:69026649-69026668 | None:intergenic | 35.0% | |
| TCATTCTTAACAGAACACAG+TGG | - | chr3_1:69026721-69026740 | Msa0371110:CDS | 35.0% | |
| AGAAGAGAGATCAGAGAATT+CGG | + | chr3_1:69026759-69026778 | None:intergenic | 35.0% | |
| ! | AGATGCTTACATAGAGCATT+TGG | - | chr3_1:69026876-69026895 | Msa0371110:intron | 35.0% |
| AATCTCTTTAGCTACATTGG+TGG | + | chr3_1:69026932-69026951 | None:intergenic | 35.0% | |
| AATATACATAACTCACGCCA+GGG | + | chr3_1:69027491-69027510 | None:intergenic | 35.0% | |
| ATAAATGCTGAGGCTAATGA+GGG | - | chr3_1:69027606-69027625 | Msa0371110:CDS | 35.0% | |
| ! | ATTTTCGCCTAGATTCATGT+CGG | + | chr3_1:69027655-69027674 | None:intergenic | 35.0% |
| CATGAATCTAGGCGAAAATT+TGG | - | chr3_1:69027656-69027675 | Msa0371110:CDS | 35.0% | |
| CAATTGCTGCAACACATAAA+AGG | + | chr3_1:69027864-69027883 | None:intergenic | 35.0% | |
| ! | CTTTTATGTGTTGCAGCAAT+TGG | - | chr3_1:69027862-69027881 | Msa0371110:intron | 35.0% |
| ! | TGAAATGAAGTCGATTCTGA+AGG | - | chr3_1:69027904-69027923 | Msa0371110:intron | 35.0% |
| CTTACAATGAAAAGACTCCA+TGG | + | chr3_1:69027930-69027949 | None:intergenic | 35.0% | |
| ! | TAAAGCATCAAACCTGAAAG+GGG | + | chr3_1:69028024-69028043 | None:intergenic | 35.0% |
| ! | CTAAAGCATCAAACCTGAAA+GGG | + | chr3_1:69028025-69028044 | None:intergenic | 35.0% |
| ! | TCTAAAGCATCAAACCTGAA+AGG | + | chr3_1:69028026-69028045 | None:intergenic | 35.0% |
| TTGACAGGTCTAAAAGTGAT+TGG | - | chr3_1:69028062-69028081 | Msa0371110:intron | 35.0% | |
| !! | GTTATTGATTGAAGTGTTGG+AGG | - | chr3_1:69028199-69028218 | Msa0371110:intron | 35.0% |
| !! | TATTGATTGAAGTGTTGGAG+GGG | - | chr3_1:69028201-69028220 | Msa0371110:intron | 35.0% |
| TACGAACCATCAAATCTGTT+AGG | - | chr3_1:69028349-69028368 | Msa0371110:intron | 35.0% | |
| ATAGTGTTAGCCATTTAGGT+AGG | - | chr3_1:69028386-69028405 | Msa0371110:intron | 35.0% | |
| AAAAGCCTTTCACAGTTCAT+AGG | + | chr3_1:69028414-69028433 | None:intergenic | 35.0% | |
| !! | TGCTTTGAAGTTGTTTCTTG+TGG | - | chr3_1:69028452-69028471 | Msa0371110:intron | 35.0% |
| !!! | CTGCATTTTTTTTTGGGATG+GGG | - | chr3_1:69028657-69028676 | Msa0371110:intron | 35.0% |
| !!! | TGCATTTTTTTTTGGGATGG+GGG | - | chr3_1:69028658-69028677 | Msa0371110:intron | 35.0% |
| ATATCATGTGGTTACATCAG+TGG | - | chr3_1:69028706-69028725 | Msa0371110:intron | 35.0% | |
| TATCATGTGGTTACATCAGT+GGG | - | chr3_1:69028707-69028726 | Msa0371110:intron | 35.0% | |
| !!! | GTGGGTTTGCTTTTGATTTA+TGG | - | chr3_1:69028725-69028744 | Msa0371110:intron | 35.0% |
| AAAATACCAAAATACCCCCA+TGG | + | chr3_1:69028884-69028903 | None:intergenic | 35.0% | |
| CGCATCATTACATATTGGAT+GGG | + | chr3_1:69029111-69029130 | None:intergenic | 35.0% | |
| ACGCATCATTACATATTGGA+TGG | + | chr3_1:69029112-69029131 | None:intergenic | 35.0% | |
| AATGATCCTTCTACCAAACT+GGG | + | chr3_1:69029144-69029163 | None:intergenic | 35.0% | |
| AAATGATCCTTCTACCAAAC+TGG | + | chr3_1:69029145-69029164 | None:intergenic | 35.0% | |
| ! | TTACCCCAAACATTTCTAGA+TGG | - | chr3_1:69029175-69029194 | Msa0371110:intron | 35.0% |
| GGATTCCATCTAGAAATGTT+TGG | + | chr3_1:69029183-69029202 | None:intergenic | 35.0% | |
| CTAAAGGAAGAGATTAGGAA+CGG | + | chr3_1:69029360-69029379 | None:intergenic | 35.0% | |
| ATAATGAATTTGGGAGGAGA+GGG | + | chr3_1:69029636-69029655 | None:intergenic | 35.0% | |
| TGACTGTAATGTAGTCCTTT+CGG | - | chr3_1:69029812-69029831 | Msa0371110:intron | 35.0% | |
| TAATGTAGTCCTTTCGGTTT+GGG | - | chr3_1:69029818-69029837 | Msa0371110:intron | 35.0% | |
| AACATTAAACCCAAACCGAA+AGG | + | chr3_1:69029830-69029849 | None:intergenic | 35.0% | |
| TCTAACCAAATGAGCTACAA+TGG | + | chr3_1:69029938-69029957 | None:intergenic | 35.0% | |
| ATTGTAGCTCATTTGGTTAG+AGG | - | chr3_1:69029937-69029956 | Msa0371110:CDS | 35.0% | |
| GCATACATAAAGTTGTCTCA+TGG | - | chr3_1:69029967-69029986 | Msa0371110:CDS | 35.0% | |
| ACATAAAGTTGTCTCATGGT+TGG | - | chr3_1:69029971-69029990 | Msa0371110:intron | 35.0% | |
| TTCAACGGAGAACCAAATAT+TGG | + | chr3_1:69029997-69030016 | None:intergenic | 35.0% | |
| TTATTCTTCCTTGTGCTGTA+CGG | - | chr3_1:69030123-69030142 | Msa0371110:intron | 35.0% | |
| TACTATTACTAGAGTGACTC+GGG | - | chr3_1:69030372-69030391 | Msa0371110:intron | 35.0% | |
| TGGGAGTGAGGATAATTTAA+AGG | - | chr3_1:69030453-69030472 | Msa0371110:CDS | 35.0% | |
| TTAGACACGTGTAAATAGGT+AGG | - | chr3_1:69030551-69030570 | Msa0371110:intron | 35.0% | |
| ACTAACAGCAAAACATCAAG+GGG | + | chr3_1:69030620-69030639 | None:intergenic | 35.0% | |
| !!! | TTTGTGCGTTGACTTTGTTT+TGG | - | chr3_1:69030780-69030799 | Msa0371110:intron | 35.0% |
| !! | TGGGTTGACTTTTCAGAATT+TGG | - | chr3_1:69030803-69030822 | Msa0371110:CDS | 35.0% |
| TCATACTCGGCAAAATATAC+TGG | - | chr3_1:69030842-69030861 | Msa0371110:intron | 35.0% | |
| CATACTCGGCAAAATATACT+GGG | - | chr3_1:69030843-69030862 | Msa0371110:intron | 35.0% | |
| AGAGTAACGAAAACGGAGAA+AGG | + | chr3_1:69026482-69026501 | None:intergenic | 40.0% | |
| TTCGACTGAAAGGAAAGGTT+TGG | + | chr3_1:69026533-69026552 | None:intergenic | 40.0% | |
| CACATTCGTGGAGTAAATCT+TGG | + | chr3_1:69026608-69026627 | None:intergenic | 40.0% | |
| TATGCCTATGCTCATTGTGA+TGG | - | chr3_1:69027457-69027476 | Msa0371110:intron | 40.0% | |
| CAATATACATAACTCACGCC+AGG | + | chr3_1:69027492-69027511 | None:intergenic | 40.0% | |
| ATCCATCCCTTTGTCTAATG+AGG | - | chr3_1:69027520-69027539 | Msa0371110:CDS | 40.0% | |
| TCCATCCCTTTGTCTAATGA+GGG | - | chr3_1:69027521-69027540 | Msa0371110:CDS | 40.0% | |
| ATAGGAGCAGATAAATGCTG+AGG | - | chr3_1:69027596-69027615 | Msa0371110:CDS | 40.0% | |
| GATAAATGCTGAGGCTAATG+AGG | - | chr3_1:69027605-69027624 | Msa0371110:CDS | 40.0% | |
| TGAGGGAATTTCTTCAATGC+TGG | - | chr3_1:69027623-69027642 | Msa0371110:CDS | 40.0% | |
| GAATCTAGGCGAAAATTTGG+AGG | - | chr3_1:69027659-69027678 | Msa0371110:CDS | 40.0% | |
| !!! | GCGTTGGCTGTTATTCTTTT+CGG | - | chr3_1:69027711-69027730 | Msa0371110:intron | 40.0% |
| TGTTGCAGCAATTGGAACTT+GGG | - | chr3_1:69027870-69027889 | Msa0371110:intron | 40.0% | |
| GCAATTGGAACTTGGGAATA+AGG | - | chr3_1:69027877-69027896 | Msa0371110:intron | 40.0% | |
| ! | AAAGCATCAAACCTGAAAGG+GGG | + | chr3_1:69028023-69028042 | None:intergenic | 40.0% |
| ! | CAGATTGACAATGCATTGAC+AGG | - | chr3_1:69028047-69028066 | Msa0371110:intron | 40.0% |
| TTTGCAGACCTATATGCCAA+CGG | - | chr3_1:69028112-69028131 | Msa0371110:intron | 40.0% | |
| ATTCAGGATAGATGCATCCA+TGG | + | chr3_1:69028174-69028193 | None:intergenic | 40.0% | |
| TTCATAGGAGCCTACCTAAA+TGG | + | chr3_1:69028399-69028418 | None:intergenic | 40.0% | |
| AGACCTTGACCAATAAAGTC+AGG | - | chr3_1:69028507-69028526 | Msa0371110:intron | 40.0% | |
| GCAATTGAGCCTGACTTTAT+TGG | + | chr3_1:69028519-69028538 | None:intergenic | 40.0% | |
| !!! | GCATTTTTTTTTGGGATGGG+GGG | - | chr3_1:69028659-69028678 | Msa0371110:intron | 40.0% |
| GTGTGAATCTCAGAATTTGC+TGG | - | chr3_1:69028681-69028700 | Msa0371110:intron | 40.0% | |
| !!! | GGGGTATTTTGGTATATCTG+CGG | + | chr3_1:69028803-69028822 | None:intergenic | 40.0% |
| ATATACCAAAATACCCCCAG+CGG | - | chr3_1:69028806-69028825 | Msa0371110:intron | 40.0% | |
| ! | TTTGGTATTTTCGTGACGTG+TGG | - | chr3_1:69028893-69028912 | Msa0371110:intron | 40.0% |
| ! | TTGGTATTTTCGTGACGTGT+GGG | - | chr3_1:69028894-69028913 | Msa0371110:intron | 40.0% |
| TGTGCTGTACGTGTAGAATT+TGG | - | chr3_1:69029022-69029041 | Msa0371110:intron | 40.0% | |
| GCGTAAAAAAGATCCCAGTT+TGG | - | chr3_1:69029128-69029147 | Msa0371110:intron | 40.0% | |
| AAAGATCCCAGTTTGGTAGA+AGG | - | chr3_1:69029135-69029154 | Msa0371110:intron | 40.0% | |
| CGTTCCTAATCTCTTCCTTT+AGG | - | chr3_1:69029358-69029377 | Msa0371110:CDS | 40.0% | |
| TCCTAATCTCTTCCTTTAGG+AGG | - | chr3_1:69029361-69029380 | Msa0371110:CDS | 40.0% | |
| TCCTCCTAAAGGAAGAGATT+AGG | + | chr3_1:69029365-69029384 | None:intergenic | 40.0% | |
| ! | TAATCTCTTCCTTTAGGAGG+AGG | - | chr3_1:69029364-69029383 | Msa0371110:CDS | 40.0% |
| ATTCAACAACCTCCTCCTAA+AGG | + | chr3_1:69029376-69029395 | None:intergenic | 40.0% | |
| TTGATACTGCAAAGTCTGTC+AGG | - | chr3_1:69029567-69029586 | Msa0371110:intron | 40.0% | |
| CATAATGAATTTGGGAGGAG+AGG | + | chr3_1:69029637-69029656 | None:intergenic | 40.0% | |
| ACTTAGGTGTCTTGTGGTAA+AGG | - | chr3_1:69029770-69029789 | Msa0371110:intron | 40.0% | |
| GTAATGTAGTCCTTTCGGTT+TGG | - | chr3_1:69029817-69029836 | Msa0371110:intron | 40.0% | |
| TGAGACCATTGTAGCTCATT+TGG | - | chr3_1:69029930-69029949 | Msa0371110:CDS | 40.0% | |
| ! | TCTCATGGTTGGCCAATATT+TGG | - | chr3_1:69029982-69030001 | Msa0371110:intron | 40.0% |
| ! | AAGTTTTCTCTGCGAAGTAG+AGG | - | chr3_1:69030059-69030078 | Msa0371110:intron | 40.0% |
| GTGAGACAATTCCAATGTGT+TGG | - | chr3_1:69030081-69030100 | Msa0371110:intron | 40.0% | |
| ! | GACAGTTTGAGGTGAAAACT+TGG | + | chr3_1:69030176-69030195 | None:intergenic | 40.0% |
| ACCACAATATGTATCACACG+TGG | + | chr3_1:69030434-69030453 | None:intergenic | 40.0% | |
| ACGTGTGATACATATTGTGG+TGG | - | chr3_1:69030433-69030452 | Msa0371110:intron | 40.0% | |
| CGTGTGATACATATTGTGGT+GGG | - | chr3_1:69030434-69030453 | Msa0371110:intron | 40.0% | |
| !! | TTGAAGTCACATTTGGTGCA+TGG | - | chr3_1:69030485-69030504 | Msa0371110:CDS | 40.0% |
| ! | TTTGGTGCATGGTGTTCTAT+AGG | - | chr3_1:69030496-69030515 | Msa0371110:intron | 40.0% |
| TTGGTGCATGGTGTTCTATA+GGG | - | chr3_1:69030497-69030516 | Msa0371110:intron | 40.0% | |
| TCACCATAAGACATGCTAAC+TGG | + | chr3_1:69030595-69030614 | None:intergenic | 40.0% | |
| CGCTACAGATACATGTATGT+AGG | + | chr3_1:69030687-69030706 | None:intergenic | 40.0% | |
| !!! | TGCGTTGACTTTGTTTTGGT+GGG | - | chr3_1:69030784-69030803 | Msa0371110:intron | 40.0% |
| !! | AGGAAGGAAGAAAGTACCTG+CGG | + | chr3_1:69026456-69026475 | None:intergenic | 45.0% |
| AAACGGAGAAAGGAGAAGGA+AGG | + | chr3_1:69026472-69026491 | None:intergenic | 45.0% | |
| ACGAAAACGGAGAAAGGAGA+AGG | + | chr3_1:69026476-69026495 | None:intergenic | 45.0% | |
| ! | GAACATGAAGAGCACATTCG+TGG | + | chr3_1:69026620-69026639 | None:intergenic | 45.0% |
| GGAGGCTAAACTTGAAGAGT+TGG | - | chr3_1:69027091-69027110 | Msa0371110:intron | 45.0% | |
| GGTTCCATCACAATGAGCAT+AGG | + | chr3_1:69027464-69027483 | None:intergenic | 45.0% | |
| CCATCCCTTTGTCTAATGAG+GGG | - | chr3_1:69027522-69027541 | Msa0371110:CDS | 45.0% | |
| CCTTCCCCTCATTAGACAAA+GGG | + | chr3_1:69027529-69027548 | None:intergenic | 45.0% | |
| CCTTTGTCTAATGAGGGGAA+GGG | - | chr3_1:69027527-69027546 | Msa0371110:CDS | 45.0% | |
| CTTTGTCTAATGAGGGGAAG+GGG | - | chr3_1:69027528-69027547 | Msa0371110:CDS | 45.0% | |
| GTAGACACCGACATGAATCT+AGG | - | chr3_1:69027645-69027664 | Msa0371110:CDS | 45.0% | |
| AATGACTTCGCTGCACTACT+TGG | - | chr3_1:69027689-69027708 | Msa0371110:intron | 45.0% | |
| GTGTTGCAGCAATTGGAACT+TGG | - | chr3_1:69027869-69027888 | Msa0371110:intron | 45.0% | |
| ACCTATATGCCAACGGTAGA+GGG | - | chr3_1:69028119-69028138 | Msa0371110:intron | 45.0% | |
| TGGTATCTTCAACTCGCTGT+AGG | + | chr3_1:69028154-69028173 | None:intergenic | 45.0% | |
| ! | ACAGCGAGTTGAAGATACCA+TGG | - | chr3_1:69028154-69028173 | Msa0371110:intron | 45.0% |
| AGGCTCCTATGAACTGTGAA+AGG | - | chr3_1:69028406-69028425 | Msa0371110:intron | 45.0% | |
| GAGCCTGACTTTATTGGTCA+AGG | + | chr3_1:69028513-69028532 | None:intergenic | 45.0% | |
| !!! | TAACTGCCATGGGGGTATTT+TGG | - | chr3_1:69028875-69028894 | Msa0371110:intron | 45.0% |
| TAACGCTTCACATGTGATCC+TGG | - | chr3_1:69029307-69029326 | Msa0371110:intron | 45.0% | |
| ATATGTTGCTGTGCTTTGCC+AGG | + | chr3_1:69029328-69029347 | None:intergenic | 45.0% | |
| AAGCACACTTAGGTGTCTTG+TGG | - | chr3_1:69029764-69029783 | Msa0371110:intron | 45.0% | |
| TAACACATCCGTACAGCACA+AGG | + | chr3_1:69030134-69030153 | None:intergenic | 45.0% | |
| ! | ATTACTAGAGTGACTCGGGT+TGG | - | chr3_1:69030376-69030395 | Msa0371110:intron | 45.0% |
| ! | TTACTAGAGTGACTCGGGTT+GGG | - | chr3_1:69030377-69030396 | Msa0371110:intron | 45.0% |
| GCCACGTGTGATACATATTG+TGG | - | chr3_1:69030430-69030449 | Msa0371110:intron | 45.0% | |
| ! | TACATATTGTGGTGGGAGTG+AGG | - | chr3_1:69030441-69030460 | Msa0371110:intron | 45.0% |
| CAGCCAGTTAGCATGTCTTA+TGG | - | chr3_1:69030589-69030608 | Msa0371110:intron | 45.0% | |
| !!! | GTGCGTTGACTTTGTTTTGG+TGG | - | chr3_1:69030783-69030802 | Msa0371110:intron | 45.0% |
| CCATAATGAGCAACGAGGTT+GGG | + | chr3_1:69030954-69030973 | None:intergenic | 45.0% | |
| TCCATAATGAGCAACGAGGT+TGG | + | chr3_1:69030955-69030974 | None:intergenic | 45.0% | |
| GGTATCCATAATGAGCAACG+AGG | + | chr3_1:69030959-69030978 | None:intergenic | 45.0% | |
| AGGAAACTGACATGCTGAAC+TGG | - | chr3_1:69031065-69031084 | Msa0371110:intron | 45.0% | |
| CTCGCGAAAACTCGTAACGA+TGG | - | chr3_1:69026958-69026977 | Msa0371110:intron | 50.0% | |
| ! | TGCTCATTGTGATGGAACCC+TGG | - | chr3_1:69027465-69027484 | Msa0371110:intron | 50.0% |
| CCCCTCATTAGACAAAGGGA+TGG | + | chr3_1:69027525-69027544 | None:intergenic | 50.0% | |
| CCCTTTGTCTAATGAGGGGA+AGG | - | chr3_1:69027526-69027545 | Msa0371110:CDS | 50.0% | |
| CCCTTCCCCTCATTAGACAA+AGG | + | chr3_1:69027530-69027549 | None:intergenic | 50.0% | |
| ! | GAAGTCGATTCTGAAGGCCA+TGG | - | chr3_1:69027910-69027929 | Msa0371110:intron | 50.0% |
| CTCATCTTGTTCCCCCTTTC+AGG | - | chr3_1:69028009-69028028 | Msa0371110:CDS | 50.0% | |
| GACCTATATGCCAACGGTAG+AGG | - | chr3_1:69028118-69028137 | Msa0371110:intron | 50.0% | |
| CATGAAATGCCCTCTACCGT+TGG | + | chr3_1:69028131-69028150 | None:intergenic | 50.0% | |
| GGAGGGGACTATGACGTTAA+AGG | - | chr3_1:69028217-69028236 | Msa0371110:intron | 50.0% | |
| AAATGATGTTGGGGAGCGAG+CGG | + | chr3_1:69028842-69028861 | None:intergenic | 50.0% | |
| CCGTTCGGCAAATGATGTTG+GGG | + | chr3_1:69028851-69028870 | None:intergenic | 50.0% | |
| CCCCAACATCATTTGCCGAA+CGG | - | chr3_1:69028848-69028867 | Msa0371110:intron | 50.0% | |
| GCCGTTCGGCAAATGATGTT+GGG | + | chr3_1:69028852-69028871 | None:intergenic | 50.0% | |
| TGCCGTTCGGCAAATGATGT+TGG | + | chr3_1:69028853-69028872 | None:intergenic | 50.0% | |
| CATGGCAGTTAACTGCCGTT+CGG | + | chr3_1:69028866-69028885 | None:intergenic | 50.0% | |
| GAACGGCAGTTAACTGCCAT+GGG | - | chr3_1:69028865-69028884 | Msa0371110:intron | 50.0% | |
| AACGGCAGTTAACTGCCATG+GGG | - | chr3_1:69028866-69028885 | Msa0371110:intron | 50.0% | |
| GTGACGTGTGGGAGCAAAAA+TGG | - | chr3_1:69028905-69028924 | Msa0371110:intron | 50.0% | |
| !! | TGCAATGAGGACTTGCTGCA+TGG | + | chr3_1:69029708-69029727 | None:intergenic | 50.0% |
| GCAGCAAGTCCTCATTGCAA+TGG | - | chr3_1:69029709-69029728 | Msa0371110:intron | 50.0% | |
| ! | TACAGACTAGGACGTTGGCT+TGG | + | chr3_1:69030287-69030306 | None:intergenic | 50.0% |
| CAGCATACAGACTAGGACGT+TGG | + | chr3_1:69030292-69030311 | None:intergenic | 50.0% | |
| TTGCAGCTTGATCCTAGAGC+CGG | - | chr3_1:69030903-69030922 | Msa0371110:intron | 50.0% | |
| TCCTTAGCCAGAACCATCAC+CGG | + | chr3_1:69030925-69030944 | None:intergenic | 50.0% | |
| CCCAACCTCGTTGCTCATTA+TGG | - | chr3_1:69030951-69030970 | Msa0371110:CDS | 50.0% | |
| CAGAAGCAAGTGAACTCCGC+AGG | - | chr3_1:69026437-69026456 | Msa0371110:three_prime_UTR | 55.0% | |
| TTCGCTGCACTACTTGGCGT+TGG | - | chr3_1:69027695-69027714 | Msa0371110:intron | 55.0% | |
| GCCCTCTACCGTTGGCATAT+AGG | + | chr3_1:69028123-69028142 | None:intergenic | 55.0% | |
| !!! | AACTGCCGCTGGGGGTATTT+TGG | + | chr3_1:69028814-69028833 | None:intergenic | 55.0% |
| CGAACGGCAGTTAACTGCCA+TGG | - | chr3_1:69028864-69028883 | Msa0371110:intron | 55.0% | |
| ACGGCAGTTAACTGCCATGG+GGG | - | chr3_1:69028867-69028886 | Msa0371110:intron | 55.0% | |
| CTTGATCCTAGAGCCGGTGA+TGG | - | chr3_1:69030909-69030928 | Msa0371110:intron | 55.0% | |
| ! | TTGTGATGGAACCCTGGCCC+TGG | - | chr3_1:69027471-69027490 | Msa0371110:intron | 60.0% |
| CATAACTCACGCCAGGGCCA+GGG | + | chr3_1:69027485-69027504 | None:intergenic | 60.0% | |
| ACATAACTCACGCCAGGGCC+AGG | + | chr3_1:69027486-69027505 | None:intergenic | 60.0% | |
| AGCGGCAGTTAACTGCCGCT+GGG | + | chr3_1:69028824-69028843 | None:intergenic | 60.0% | |
| !! | CCAGAACCATCACCGGCTCT+AGG | + | chr3_1:69030918-69030937 | None:intergenic | 60.0% |
| ! | CCTAGAGCCGGTGATGGTTC+TGG | - | chr3_1:69030915-69030934 | Msa0371110:intron | 60.0% |
| !! | GCCGGTGATGGTTCTGGCTA+AGG | - | chr3_1:69030921-69030940 | Msa0371110:intron | 60.0% |
| CGGCAGTTAACTGCCGCTGG+GGG | + | chr3_1:69028822-69028841 | None:intergenic | 65.0% | |
| GCGGCAGTTAACTGCCGCTG+GGG | + | chr3_1:69028823-69028842 | None:intergenic | 65.0% | |
| GAGCGGCAGTTAACTGCCGC+TGG | + | chr3_1:69028825-69028844 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 69026369 | 69031220 | 69026369 | ID=Msa0371110;Name=Msa0371110 |
| chr3_1 | mRNA | 69026369 | 69031220 | 69026369 | ID=Msa0371110-mRNA-1;Parent=Msa0371110;Name=Msa0371110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=64|0.90|0.91|1|0.81|0.83|12|279|390 |
| chr3_1 | exon | 69026369 | 69026770 | 69026369 | ID=Msa0371110-mRNA-1:exon:14689;Parent=Msa0371110-mRNA-1 |
| chr3_1 | exon | 69027509 | 69027686 | 69027509 | ID=Msa0371110-mRNA-1:exon:14688;Parent=Msa0371110-mRNA-1 |
| chr3_1 | exon | 69027781 | 69027876 | 69027781 | ID=Msa0371110-mRNA-1:exon:14687;Parent=Msa0371110-mRNA-1 |
| chr3_1 | exon | 69028001 | 69028056 | 69028001 | ID=Msa0371110-mRNA-1:exon:14686;Parent=Msa0371110-mRNA-1 |
| chr3_1 | exon | 69029342 | 69029558 | 69029342 | ID=Msa0371110-mRNA-1:exon:14685;Parent=Msa0371110-mRNA-1 |
| chr3_1 | exon | 69029641 | 69029711 | 69029641 | ID=Msa0371110-mRNA-1:exon:14684;Parent=Msa0371110-mRNA-1 |
| chr3_1 | exon | 69029909 | 69029989 | 69029909 | ID=Msa0371110-mRNA-1:exon:14683;Parent=Msa0371110-mRNA-1 |
| chr3_1 | exon | 69030447 | 69030511 | 69030447 | ID=Msa0371110-mRNA-1:exon:14682;Parent=Msa0371110-mRNA-1 |
| chr3_1 | exon | 69030610 | 69030711 | 69030610 | ID=Msa0371110-mRNA-1:exon:14681;Parent=Msa0371110-mRNA-1 |
| chr3_1 | exon | 69030792 | 69030855 | 69030792 | ID=Msa0371110-mRNA-1:exon:14680;Parent=Msa0371110-mRNA-1 |
| chr3_1 | exon | 69030948 | 69031041 | 69030948 | ID=Msa0371110-mRNA-1:exon:14679;Parent=Msa0371110-mRNA-1 |
| chr3_1 | exon | 69031131 | 69031220 | 69031131 | ID=Msa0371110-mRNA-1:exon:14678;Parent=Msa0371110-mRNA-1 |
| chr3_1 | five_prime_UTR | 69031157 | 69031220 | 69031157 | ID=Msa0371110-mRNA-1:five_prime_utr;Parent=Msa0371110-mRNA-1 |
| chr3_1 | CDS | 69031131 | 69031156 | 69031131 | ID=Msa0371110-mRNA-1:cds;Parent=Msa0371110-mRNA-1 |
| chr3_1 | CDS | 69030948 | 69031041 | 69030948 | ID=Msa0371110-mRNA-1:cds;Parent=Msa0371110-mRNA-1 |
| chr3_1 | CDS | 69030792 | 69030855 | 69030792 | ID=Msa0371110-mRNA-1:cds;Parent=Msa0371110-mRNA-1 |
| chr3_1 | CDS | 69030610 | 69030711 | 69030610 | ID=Msa0371110-mRNA-1:cds;Parent=Msa0371110-mRNA-1 |
| chr3_1 | CDS | 69030447 | 69030511 | 69030447 | ID=Msa0371110-mRNA-1:cds;Parent=Msa0371110-mRNA-1 |
| chr3_1 | CDS | 69029909 | 69029989 | 69029909 | ID=Msa0371110-mRNA-1:cds;Parent=Msa0371110-mRNA-1 |
| chr3_1 | CDS | 69029641 | 69029711 | 69029641 | ID=Msa0371110-mRNA-1:cds;Parent=Msa0371110-mRNA-1 |
| chr3_1 | CDS | 69029342 | 69029558 | 69029342 | ID=Msa0371110-mRNA-1:cds;Parent=Msa0371110-mRNA-1 |
| chr3_1 | CDS | 69028001 | 69028056 | 69028001 | ID=Msa0371110-mRNA-1:cds;Parent=Msa0371110-mRNA-1 |
| chr3_1 | CDS | 69027781 | 69027876 | 69027781 | ID=Msa0371110-mRNA-1:cds;Parent=Msa0371110-mRNA-1 |
| chr3_1 | CDS | 69027509 | 69027686 | 69027509 | ID=Msa0371110-mRNA-1:cds;Parent=Msa0371110-mRNA-1 |
| chr3_1 | CDS | 69026648 | 69026770 | 69026648 | ID=Msa0371110-mRNA-1:cds;Parent=Msa0371110-mRNA-1 |
| chr3_1 | three_prime_UTR | 69026369 | 69026647 | 69026369 | ID=Msa0371110-mRNA-1:three_prime_utr;Parent=Msa0371110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
