AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1089540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089540 MtrunA17_Chr2g0291741 97.963 589 10 1 1 587 1 589 0.0 1181
Msa1089540 MtrunA17_Chr5g0442661 59.206 554 214 4 21 567 23 571 0.0 667
Msa1089540 MtrunA17_Chr2g0299621 44.112 569 280 12 9 564 15 558 1.32e-141 422
Msa1089540 MtrunA17_Chr7g0256321 34.545 385 223 10 42 401 6 386 1.33e-46 171
Msa1089540 MtrunA17_Chr1g0171771 32.812 384 230 9 42 401 6 385 1.69e-44 165
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089540 AT5G45110.1 62.039 569 195 7 1 559 1 558 0.0 676
Msa1089540 AT4G19660.1 60.611 589 197 11 2 578 3 568 0.0 645
Msa1089540 AT4G19660.2 57.955 616 197 12 2 578 3 595 0.0 631
Msa1089540 AT5G45110.2 60.762 525 186 7 1 519 1 511 0.0 605
Msa1089540 AT1G64280.1 40.602 532 298 7 39 562 42 563 8.43e-126 382
Msa1089540 AT4G26120.2 40.700 543 300 10 39 573 45 573 1.45e-123 377
Msa1089540 AT4G26120.1 40.700 543 300 10 39 573 44 572 2.44e-123 376
Msa1089540 AT3G57130.1 33.858 381 227 8 42 401 8 384 3.68e-50 180
Msa1089540 AT2G41370.1 33.756 394 227 10 37 401 3 391 4.08e-47 172
Msa1089540 AT3G57130.2 30.769 156 98 3 42 188 8 162 1.90e-16 78.2

Find 164 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGACTCTTTGCTCTTCT+TGG 0.133695 7_3:+3132914 None:intergenic
TGCAATGTCCATGGCTAATT+TGG 0.171363 7_3:+3133435 None:intergenic
GAACAAGCTGAGTTCTAATT+TGG 0.195265 7_3:-3136812 Msa1089540:CDS
ATTGATTCTGATTATGATTA+TGG 0.207555 7_3:-3136778 Msa1089540:CDS
TATAACTTTACACTATAAAT+TGG 0.243166 7_3:+3132602 None:intergenic
AAAACAAGAGACTTATTTCT+AGG 0.255152 7_3:-3133315 Msa1089540:CDS
TACCCCTCTTAAATATTTCA+TGG 0.278681 7_3:+3136680 None:intergenic
AAGGTTGTTTCTGAAGTTCT+TGG 0.286176 7_3:-3135234 Msa1089540:CDS
GAAAGCAAAAGTGTGAAATT+TGG 0.294295 7_3:+3137583 None:intergenic
GACCCGTGATTCTCTCTCTC+TGG 0.299382 7_3:-3137663 Msa1089540:five_prime_UTR
GTATAAGAAGATTATGTTAT+AGG 0.303050 7_3:-3136984 Msa1089540:five_prime_UTR
ATCCGAGTTTGCTGGTCTTT+CGG 0.306284 7_3:-3133398 Msa1089540:CDS
TGTAATATACAGGCTCTCTA+AGG 0.310203 7_3:+3132788 None:intergenic
CTTGACTCTTTGCTCTTCTT+GGG 0.320433 7_3:+3132915 None:intergenic
TCGAGCACTTCCGAGCAATT+AGG 0.321539 7_3:+3132988 None:intergenic
TCTCAAAATAATGGCTAATT+CGG 0.322919 7_3:-3136950 Msa1089540:exon
TTTAAGAGGGGTAAAGATAA+AGG 0.330980 7_3:-3136670 Msa1089540:CDS
TGAAGTTCTTGGATTGGGTT+TGG 0.339158 7_3:-3135223 Msa1089540:CDS
TTTCTAGCCTTGTAATATAC+AGG 0.346826 7_3:+3132778 None:intergenic
AGACGTCTTCTTAACTTTGT+AGG 0.350294 7_3:-3135615 Msa1089540:CDS
GACTGTACGCGCGTAATAGA+TGG 0.351699 7_3:+3137880 None:intergenic
GTTTCTGAAGTTCTTGGATT+GGG 0.355904 7_3:-3135228 Msa1089540:CDS
CATATAGATTCTCAAAATAA+TGG 0.357360 7_3:-3136959 Msa1089540:exon
AAAATTCATCGGTGCATTCT+AGG 0.360553 7_3:-3136721 Msa1089540:CDS
CGAGCATGATCGGAGCCATT+AGG 0.362185 7_3:+3136856 None:intergenic
GTTTAGAGATTCTATATAAG+AGG 0.362602 7_3:-3137040 Msa1089540:five_prime_UTR
GTTATTAAGCAACTTTGGTT+TGG 0.364289 7_3:-3137288 Msa1089540:five_prime_UTR
AGGGCATATGTTGTGACTAA+TGG 0.365492 7_3:+3136876 None:intergenic
ATCGGTGCATTCTAGGTTCT+AGG 0.371950 7_3:-3136714 Msa1089540:CDS
TTGGTTTGATTATGCTGCTT+TGG 0.376289 7_3:-3137472 Msa1089540:five_prime_UTR
TTATGCTGCTTTGGTGGCTC+TGG 0.378132 7_3:-3137463 Msa1089540:five_prime_UTR
TATCATTGTGGAGGGAATTC+CGG 0.388694 7_3:-3136746 Msa1089540:CDS
GATCCATGGAAATTACAAAA+AGG 0.395572 7_3:+3137612 None:intergenic
AAAGCTGAGTTTAGTCGCTC+TGG 0.402143 7_3:-3132838 Msa1089540:CDS
ACCCGTGATTCTCTCTCTCT+GGG 0.403225 7_3:-3137662 Msa1089540:five_prime_UTR
TGTTTCTGAAGTTCTTGGAT+TGG 0.410365 7_3:-3135229 Msa1089540:CDS
AATTCCCTCCACAATGATAT+CGG 0.420705 7_3:+3136750 None:intergenic
AGTTTCTGAAGGGAAAGAAA+TGG 0.423976 7_3:+3137720 None:intergenic
TACAAGTTATTAAGCAACTT+TGG 0.427786 7_3:-3137293 Msa1089540:five_prime_UTR
GTTTCTGAAGGGAAAGAAAT+GGG 0.430834 7_3:+3137721 None:intergenic
TCCACAGCAAAATTAATTGC+AGG 0.431240 7_3:+3136469 None:intergenic
TTTATCATATCTCACAATAG+AGG 0.435222 7_3:-3137062 Msa1089540:five_prime_UTR
TTCTCAAGGTAAAACAAATC+AGG 0.437786 7_3:+3132943 None:intergenic
TTGAGCGATTTGTTGCCTTA+TGG 0.438180 7_3:-3136613 Msa1089540:CDS
AGTCACAACATATGCCCTAA+TGG 0.443721 7_3:-3136871 Msa1089540:CDS
GCTCCGCCGCGACCTTCATC+AGG 0.443936 7_3:-3135430 Msa1089540:CDS
ATGGAGGCCCTGATGAAAAC+AGG 0.445853 7_3:-3133292 Msa1089540:intron
GCTCTTTCTCAATTGAGATC+TGG 0.446362 7_3:+3135484 None:intergenic
GGAAGTGCTCGACAAGTTCA+TGG 0.446634 7_3:-3132977 Msa1089540:CDS
TAGTATCGCTTCTTACGAAA+GGG 0.448428 7_3:-3135125 Msa1089540:CDS
TCATCTTCGCACTTGTCAAA+TGG 0.450698 7_3:-3136901 Msa1089540:CDS
GTGGTGGGTGTCAGTCGAGA+TGG 0.451143 7_3:-3133025 Msa1089540:intron
AGAGTGCTGTTAGTATTTGT+AGG 0.451754 7_3:-3135071 Msa1089540:CDS
GACGTCTTCTTAACTTTGTA+GGG 0.452305 7_3:-3135614 Msa1089540:CDS
GAGACAACATCCGAGTTTGC+TGG 0.452844 7_3:-3133406 Msa1089540:CDS
AGAACTTCAGAAACAACCTT+AGG 0.452990 7_3:+3135237 None:intergenic
TCATAACCAACTTTGCCATA+AGG 0.458550 7_3:+3136598 None:intergenic
GCTGGTCTTTCGGCATCAAA+AGG 0.459478 7_3:-3133388 Msa1089540:CDS
AGAAGCGATACTATAATTGA+AGG 0.460936 7_3:+3135135 None:intergenic
CTCGAGGTTACGAGCATGAT+CGG 0.461902 7_3:+3136846 None:intergenic
GAGCATGATCGGAGCCATTA+GGG 0.467051 7_3:+3136857 None:intergenic
TGGTGGGTGTCAGTCGAGAT+GGG 0.469353 7_3:-3133024 Msa1089540:intron
GTTTGGCTAATGTCAATCTT+CGG 0.472297 7_3:-3135206 Msa1089540:CDS
AAAGGATTGTCGAAGAATGA+AGG 0.474320 7_3:-3136652 Msa1089540:CDS
ATAACACAAATCTGAACAAA+TGG 0.476724 7_3:+3137165 None:intergenic
GTTTGATTATGCTGCTTTGG+TGG 0.482700 7_3:-3137469 Msa1089540:five_prime_UTR
CTTTGTAGGGAAGGCTCTTG+TGG 0.482823 7_3:-3135601 Msa1089540:CDS
TGCCACTCTGTCAACACATT+GGG 0.488312 7_3:+3135521 None:intergenic
CAAGAGACTTATTTCTAGGA+TGG 0.490241 7_3:-3133311 Msa1089540:CDS
AGTAATCAGAGTGAGAAAAG+AGG 0.492268 7_3:+3137784 None:intergenic
CTTCTTGGGTGCCCTTCTCA+AGG 0.494673 7_3:+3132929 None:intergenic
GACATTACTTTAGATGAAGC+TGG 0.496309 7_3:-3135291 Msa1089540:CDS
AGGTTCAAACGGAAACTTAA+GGG 0.497387 7_3:-3133368 Msa1089540:CDS
TTTCCATGAAATATTTAAGA+GGG 0.500978 7_3:-3136683 Msa1089540:CDS
TTGTTGCCTTATGGCAAAGT+TGG 0.501023 7_3:-3136604 Msa1089540:CDS
AAGGTTCAAACGGAAACTTA+AGG 0.501661 7_3:-3133369 Msa1089540:CDS
AGGGACAAAGTGTCCACTAC+AGG 0.502128 7_3:+3135390 None:intergenic
AGAAATGCGAAGGAATCCTT+TGG 0.503336 7_3:-3134959 Msa1089540:CDS
TTCTTGAGCTATGCATATAG+TGG 0.505104 7_3:-3136562 Msa1089540:CDS
TACGAAAGGGGCTTGTGCAT+CGG 0.506556 7_3:-3135112 Msa1089540:CDS
CAAGAACATCAATGCATATC+CGG 0.508900 7_3:+3134986 None:intergenic
TCGGCATCAAAAGGTTCAAA+CGG 0.510189 7_3:-3133379 Msa1089540:CDS
GCATCGGATTTGACTTTCGA+TGG 0.514017 7_3:-3135096 Msa1089540:CDS
GACAACGAAAACGAAGAGAT+AGG 0.515174 7_3:+3132624 None:intergenic
ATAGTATCGCTTCTTACGAA+AGG 0.524638 7_3:-3135126 Msa1089540:CDS
AAGCTGAGTTTAGTCGCTCT+GGG 0.526051 7_3:-3132837 Msa1089540:CDS
TGCCGAAAGACCAGCAAACT+CGG 0.526961 7_3:+3133396 None:intergenic
CACTAGAATTCACAAGGCAT+TGG 0.529760 7_3:-3135358 Msa1089540:CDS
ATGGCTAATTTGGCTTCCAA+AGG 0.534107 7_3:+3133445 None:intergenic
GCGCTACTTTCCTAATTGCT+CGG 0.534492 7_3:-3132998 Msa1089540:CDS
CTCTGCACGTGCAATGTCCA+TGG 0.539317 7_3:+3133426 None:intergenic
TGGCTAATTTGGCTTCCAAA+GGG 0.539806 7_3:+3133446 None:intergenic
TCACATTGCTGCCATGCGTA+AGG 0.540227 7_3:-3135160 Msa1089540:CDS
CACAGTGGGCTACTGCATAG+TGG 0.545838 7_3:+3135262 None:intergenic
TCTTCTTAACTTTGTAGGGA+AGG 0.546009 7_3:-3135610 Msa1089540:CDS
CATCATCCTGATGAAGGTCG+CGG 0.548121 7_3:+3135424 None:intergenic
ACACATGTAGACACCTCCAT+TGG 0.548193 7_3:+3136523 None:intergenic
AGTAGCCCACTGTGACCCTA+AGG 0.552063 7_3:-3135253 Msa1089540:CDS
AGATGTCATTTCAATCCTCA+TGG 0.554111 7_3:-3135577 Msa1089540:CDS
GGAAAGAAACAAATAAAGAC+CGG 0.554242 7_3:-3135005 Msa1089540:CDS
GAACTTCAGAAACAACCTTA+GGG 0.555444 7_3:+3135238 None:intergenic
ACCCAGAGAGAGAGAATCAC+GGG 0.560087 7_3:+3137661 None:intergenic
GTCAATCTTCGGAATTCTCG+AGG 0.563292 7_3:-3135195 Msa1089540:CDS
GATGTATTATTGCTCAAAGA+GGG 0.566332 7_3:+3136922 None:intergenic
GTGCCACTCTGTCAACACAT+TGG 0.567094 7_3:+3135520 None:intergenic
GGGTGTCAGTCGAGATGGGG+CGG 0.570433 7_3:-3133020 Msa1089540:intron
TCACCATACCTCTGTTCTCA+AGG 0.571825 7_3:+3134875 None:intergenic
TTTAGAGATTCTATATAAGA+GGG 0.573036 7_3:-3137039 Msa1089540:five_prime_UTR
TAGAGAGCCTGTATATTACA+AGG 0.574111 7_3:-3132785 Msa1089540:CDS
AAGGATTGTCGAAGAATGAA+GGG 0.575680 7_3:-3136651 Msa1089540:CDS
TGTTGACAGAGTGGCACGAT+CGG 0.578105 7_3:-3135514 Msa1089540:CDS
GTGCTGTTAGTATTTGTAGG+AGG 0.578982 7_3:-3135068 Msa1089540:CDS
TTTGGAAGCCAAATTAGCCA+TGG 0.582434 7_3:-3133443 Msa1089540:CDS
CGAGTTGATTCAGTTGACAA+TGG 0.584484 7_3:+3135547 None:intergenic
TAGGAGGTTGACGAGGCCAA+AGG 0.585498 7_3:-3135052 Msa1089540:CDS
TTCCATGAAATATTTAAGAG+GGG 0.588302 7_3:-3136682 Msa1089540:CDS
AAGAAGAGCAAAGAGTCAAG+AGG 0.588632 7_3:-3132912 Msa1089540:CDS
GTAATATACAGGCTCTCTAA+GGG 0.591902 7_3:+3132789 None:intergenic
TAAACTTAAACCCTCTCCAA+TGG 0.595072 7_3:-3136539 Msa1089540:CDS
TGATGTATTATTGCTCAAAG+AGG 0.595361 7_3:+3136921 None:intergenic
GGTGGGTGTCAGTCGAGATG+GGG 0.597335 7_3:-3133023 Msa1089540:intron
AGGCTCTCTAAGGGATGAAG+AGG 0.600248 7_3:+3132798 None:intergenic
GAGACTTATTTCTAGGATGG+AGG 0.602102 7_3:-3133308 Msa1089540:CDS
AGTATCGCTTCTTACGAAAG+GGG 0.605200 7_3:-3135124 Msa1089540:CDS
TGGAAAAGTGATACCAACTC+TGG 0.609116 7_3:+3136415 None:intergenic
AACCCAGAGAGAGAGAATCA+CGG 0.611755 7_3:+3137660 None:intergenic
GTTTGTGCTCATGATGCTTG+CGG 0.612341 7_3:-3136493 Msa1089540:CDS
TTCTTGAAAGAGAAATGCGA+AGG 0.612843 7_3:-3134969 Msa1089540:CDS
GAATTCCGGTGAAAATTCAT+CGG 0.614156 7_3:-3136732 Msa1089540:CDS
CTGAGACATTCAACATATCG+TGG 0.614995 7_3:+3137812 None:intergenic
TCTCAATTGAGATCTGGTCA+AGG 0.616130 7_3:+3135490 None:intergenic
CAAGGTACAAAAGCTTCATG+TGG 0.618221 7_3:+3134893 None:intergenic
AAATTTGGTAATGAGATCCA+TGG 0.621511 7_3:+3137598 None:intergenic
CTCTGTGTCTTCCCACACAG+TGG 0.626716 7_3:-3134926 Msa1089540:CDS
CAAGGTAAAACAAATCAGGT+AGG 0.633426 7_3:+3132947 None:intergenic
AATTGAAGGCTCCTTACGCA+TGG 0.634465 7_3:+3135149 None:intergenic
GTAGACACCTCCATTGGAGA+GGG 0.634552 7_3:+3136529 None:intergenic
TGAAAACGATGCTCCTGTAG+TGG 0.635923 7_3:-3135403 Msa1089540:CDS
ACTTAAACCCTCTCCAATGG+AGG 0.636356 7_3:-3136536 Msa1089540:CDS
ATGGTAGCTGCAAAACCTCA+CGG 0.640058 7_3:+3137184 None:intergenic
TGTTCAAACTTATAACCTCG+AGG 0.641337 7_3:+3136830 None:intergenic
ACAGAGGGATCTGTAGCCAA+AGG 0.651194 7_3:+3134943 None:intergenic
AACAACCTTAGGGTCACAGT+GGG 0.652928 7_3:+3135248 None:intergenic
TCAATCTTCGGAATTCTCGA+GGG 0.655049 7_3:-3135194 Msa1089540:CDS
GCTTAAAGATGATGTCAACA+AGG 0.657265 7_3:-3132875 Msa1089540:CDS
ACGAATCACTAGAATTCACA+AGG 0.672729 7_3:-3135364 Msa1089540:CDS
CACTGTGTGGGAAGACACAG+AGG 0.675475 7_3:+3134927 None:intergenic
TGTAGACACCTCCATTGGAG+AGG 0.677893 7_3:+3136528 None:intergenic
TGCCCAATGTGTTGACAGAG+TGG 0.682710 7_3:-3135523 Msa1089540:CDS
TTCAAACGGAAACTTAAGGG+AGG 0.682937 7_3:-3133365 Msa1089540:CDS
GTATTTGTAGGAGGTTGACG+AGG 0.688711 7_3:-3135059 Msa1089540:CDS
TGATGCCGATATCATTGTGG+AGG 0.689812 7_3:-3136755 Msa1089540:CDS
GTACGCGCGTAATAGATGGA+TGG 0.690424 7_3:+3137884 None:intergenic
GAGATCATCAGCCACTGTGT+GGG 0.692384 7_3:+3134915 None:intergenic
CGATCATGCTCGTAACCTCG+AGG 0.695662 7_3:-3136845 Msa1089540:CDS
GACAATGGAAAGCAACCATG+AGG 0.699033 7_3:+3135562 None:intergenic
GGAGATCATCAGCCACTGTG+TGG 0.705139 7_3:+3134914 None:intergenic
TGGTGATGCCGATATCATTG+TGG 0.710168 7_3:-3136758 Msa1089540:CDS
GATGCCGATATCATTGTGGA+GGG 0.714650 7_3:-3136754 Msa1089540:CDS
AAACAACCTTAGGGTCACAG+TGG 0.718165 7_3:+3135247 None:intergenic
ATCATGTGTTATGTGCCGTG+AGG 0.734049 7_3:-3137199 Msa1089540:five_prime_UTR
ACTGTGTGGGAAGACACAGA+GGG 0.734076 7_3:+3134928 None:intergenic
CATCCTGATGAAGGTCGCGG+CGG 0.747920 7_3:+3135427 None:intergenic
AGTGCTCGACAAGTTCATGG+AGG 0.770013 7_3:-3132974 Msa1089540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAAAAAAAAAAAA+AGG + chr7_3:3136817-3136836 None:intergenic 0.0%
!! ATAAAAAAGATTAATTGATA+AGG + chr7_3:3133047-3133066 None:intergenic 10.0%
!!! ATTTTGTTTTCTTCAATTTT+GGG - chr7_3:3132973-3132992 Msa1089540:CDS 15.0%
!!! TATTATTATCAGATACTTTT+TGG - chr7_3:3134274-3134293 Msa1089540:intron 15.0%
!!! TCTTTTATTTTTGAAGTATT+TGG - chr7_3:3134353-3134372 Msa1089540:intron 15.0%
!!! CTTTTATTTTTGAAGTATTT+GGG - chr7_3:3134354-3134373 Msa1089540:intron 15.0%
!!! ATTTTTAAATTTTCTGTTTC+AGG - chr7_3:3136830-3136849 Msa1089540:CDS 15.0%
!!! TTTATAGTGCAAATTTTAAA+AGG - chr7_3:3137761-3137780 Msa1089540:five_prime_UTR 15.0%
!!! TTATAGTGCAAATTTTAAAA+GGG - chr7_3:3137762-3137781 Msa1089540:five_prime_UTR 15.0%
!! TATAACTTTACACTATAAAT+TGG + chr7_3:3137870-3137889 None:intergenic 15.0%
!!! GATTTTGTTTTCTTCAATTT+TGG - chr7_3:3132972-3132991 Msa1089540:CDS 20.0%
!!! TGTTATTAAGGAACTTTTTT+TGG - chr7_3:3133152-3133171 Msa1089540:intron 20.0%
!! TTTAGAGATTCTATATAAGA+GGG - chr7_3:3133430-3133449 Msa1089540:CDS 20.0%
!! GTATAAGAAGATTATGTTAT+AGG - chr7_3:3133485-3133504 Msa1089540:intron 20.0%
!! CATATAGATTCTCAAAATAA+TGG - chr7_3:3133510-3133529 Msa1089540:intron 20.0%
!!! ATTGATTCTGATTATGATTA+TGG - chr7_3:3133691-3133710 Msa1089540:intron 20.0%
!!! TTTTCCATGAAATATTTAAG+AGG - chr7_3:3133785-3133804 Msa1089540:intron 20.0%
!! TTTCCATGAAATATTTAAGA+GGG - chr7_3:3133786-3133805 Msa1089540:intron 20.0%
!! ATATAGAAAAATGTTCAAGT+GGG + chr7_3:3134401-3134420 None:intergenic 20.0%
!! ATAATATAGAGAAAACAGAA+AGG + chr7_3:3134426-3134445 None:intergenic 20.0%
!!! ATGAAATTTAGTTCAAGTTT+AGG - chr7_3:3134444-3134463 Msa1089540:intron 20.0%
!! GGAATAATTAATTATCTGTT+AGG - chr7_3:3134465-3134484 Msa1089540:intron 20.0%
!!! TAAGAAATTTGTTTTGGAAA+AGG + chr7_3:3134597-3134616 None:intergenic 20.0%
!!! GTATAGTAAGAAATTTGTTT+TGG + chr7_3:3134603-3134622 None:intergenic 20.0%
!!! TTTACTTTTGTTGATTTTGA+AGG - chr7_3:3134650-3134669 Msa1089540:intron 20.0%
!!! TTACTTTTGTTGATTTTGAA+GGG - chr7_3:3134651-3134670 Msa1089540:intron 20.0%
!! AAACAAAAAAACTCCAAAAT+GGG + chr7_3:3135804-3135823 None:intergenic 20.0%
!! AAGAACCACTTAAAATTTAT+GGG - chr7_3:3135842-3135861 Msa1089540:intron 20.0%
!! AGTTCAAAATTACATTAAGT+TGG + chr7_3:3135966-3135985 None:intergenic 20.0%
!! TATTTAATAGTATCCTCTTA+TGG - chr7_3:3137217-3137236 Msa1089540:five_prime_UTR 20.0%
!! AGAAAAATGTGACAAAAAAA+AGG - chr7_3:3137709-3137728 Msa1089540:five_prime_UTR 20.0%
!!! TTTTACAATTTTACATGAGT+TGG + chr7_3:3137800-3137819 None:intergenic 20.0%
! AAAAAGAAGAAGTTTCTGAA+GGG + chr7_3:3132762-3132781 None:intergenic 25.0%
! AAAAAAGAAGAAGTTTCTGA+AGG + chr7_3:3132763-3132782 None:intergenic 25.0%
!!! GAACAAATTAAGCACTTTTT+TGG - chr7_3:3133129-3133148 Msa1089540:intron 25.0%
! TACAAGTTATTAAGCAACTT+TGG - chr7_3:3133176-3133195 Msa1089540:intron 25.0%
! ATAACACAAATCTGAACAAA+TGG + chr7_3:3133307-3133326 None:intergenic 25.0%
! TTTATCATATCTCACAATAG+AGG - chr7_3:3133407-3133426 Msa1089540:CDS 25.0%
! GTTTAGAGATTCTATATAAG+AGG - chr7_3:3133429-3133448 Msa1089540:CDS 25.0%
!!! TGTATAAAGTTTGAGTTTTG+TGG - chr7_3:3133463-3133482 Msa1089540:CDS 25.0%
! TCTCAAAATAATGGCTAATT+CGG - chr7_3:3133519-3133538 Msa1089540:intron 25.0%
! TTCCATGAAATATTTAAGAG+GGG - chr7_3:3133787-3133806 Msa1089540:intron 25.0%
! TCATAGATATAATGTTTACC+TGG + chr7_3:3134077-3134096 None:intergenic 25.0%
!! AAGATGTATTTGAGAAGTAT+TGG - chr7_3:3134222-3134241 Msa1089540:intron 25.0%
! TATAGAAAAATGTTCAAGTG+GGG + chr7_3:3134400-3134419 None:intergenic 25.0%
! CATATAGAAAAATGTTCAAG+TGG + chr7_3:3134402-3134421 None:intergenic 25.0%
! AATCATCATACAAAACATCT+TGG + chr7_3:3134509-3134528 None:intergenic 25.0%
!! AATTCTAGTGATTCGTTTTA+GGG + chr7_3:3135101-3135120 None:intergenic 25.0%
!! AAACAAAATGACTCAGTTTT+GGG + chr7_3:3135719-3135738 None:intergenic 25.0%
!! AAAACAAAATGACTCAGTTT+TGG + chr7_3:3135720-3135739 None:intergenic 25.0%
! CAAACAAAAAAACTCCAAAA+TGG + chr7_3:3135805-3135824 None:intergenic 25.0%
! GAAGAACCACTTAAAATTTA+TGG - chr7_3:3135841-3135860 Msa1089540:intron 25.0%
! ATTTAGCTACAAATGAAACA+AGG + chr7_3:3136653-3136672 None:intergenic 25.0%
!! AAAACAAGAGACTTATTTCT+AGG - chr7_3:3137154-3137173 Msa1089540:five_prime_UTR 25.0%
! TAGAATTGTACATAGAAACA+TGG + chr7_3:3137398-3137417 None:intergenic 25.0%
TCAAGAGAGAAAAAGTCAAA+GGG + chr7_3:3132788-3132807 None:intergenic 30.0%
CATGGAAATTACAAAAAGGT+TGG + chr7_3:3132856-3132875 None:intergenic 30.0%
! CAACCTTTTTGTAATTTCCA+TGG - chr7_3:3132854-3132873 Msa1089540:CDS 30.0%
GATCCATGGAAATTACAAAA+AGG + chr7_3:3132860-3132879 None:intergenic 30.0%
!! AAATTTGGTAATGAGATCCA+TGG + chr7_3:3132874-3132893 None:intergenic 30.0%
! GAAAGCAAAAGTGTGAAATT+TGG + chr7_3:3132889-3132908 None:intergenic 30.0%
! AATTTCACACTTTTGCTTTC+TGG - chr7_3:3132889-3132908 Msa1089540:CDS 30.0%
! ATTTCACACTTTTGCTTTCT+GGG - chr7_3:3132890-3132909 Msa1089540:CDS 30.0%
!!! GTTTTCTTCAATTTTGGGTT+TGG - chr7_3:3132978-3132997 Msa1089540:CDS 30.0%
!!! GCACTTTTTTGGTGTTATTA+AGG - chr7_3:3133140-3133159 Msa1089540:intron 30.0%
GTTATTAAGCAACTTTGGTT+TGG - chr7_3:3133181-3133200 Msa1089540:intron 30.0%
GATGTATTATTGCTCAAAGA+GGG + chr7_3:3133550-3133569 None:intergenic 30.0%
TGATGTATTATTGCTCAAAG+AGG + chr7_3:3133551-3133570 None:intergenic 30.0%
TACCCCTCTTAAATATTTCA+TGG + chr7_3:3133792-3133811 None:intergenic 30.0%
TTTAAGAGGGGTAAAGATAA+AGG - chr7_3:3133799-3133818 Msa1089540:intron 30.0%
TGGTATTTGAAAAATGGAAG+AGG + chr7_3:3134037-3134056 None:intergenic 30.0%
CAACTCTGGTATTTGAAAAA+TGG + chr7_3:3134043-3134062 None:intergenic 30.0%
!! CATTTTTCAAATACCAGAGT+TGG - chr7_3:3134041-3134060 Msa1089540:intron 30.0%
TCTATTGTTAGTTAGACGTA+CGG - chr7_3:3134138-3134157 Msa1089540:intron 30.0%
ATAGAAAAATGTTCAAGTGG+GGG + chr7_3:3134399-3134418 None:intergenic 30.0%
TTGTATGATGATTCAGAACA+TGG - chr7_3:3134516-3134535 Msa1089540:intron 30.0%
TGTATGATGATTCAGAACAT+GGG - chr7_3:3134517-3134536 Msa1089540:intron 30.0%
CCTAAAGAAAGCAAGATATA+TGG + chr7_3:3134706-3134725 None:intergenic 30.0%
CCATATATCTTGCTTTCTTT+AGG - chr7_3:3134703-3134722 Msa1089540:intron 30.0%
TTGCTTTCTTTAGGCATAAT+TGG - chr7_3:3134712-3134731 Msa1089540:intron 30.0%
CATAATTGGCATCTTATGTT+GGG - chr7_3:3134726-3134745 Msa1089540:intron 30.0%
AGTCATATTGTATCTGATCA+AGG - chr7_3:3134791-3134810 Msa1089540:intron 30.0%
ATTGTATCTGATCAAGGTTA+AGG - chr7_3:3134797-3134816 Msa1089540:intron 30.0%
! GAATTCTAGTGATTCGTTTT+AGG + chr7_3:3135102-3135121 None:intergenic 30.0%
AGAAGCGATACTATAATTGA+AGG + chr7_3:3135337-3135356 None:intergenic 30.0%
! GTTTTTGTGTGATAATCCTT+TGG + chr7_3:3135436-3135455 None:intergenic 30.0%
TTATCACACAAAAACAGAAC+AGG - chr7_3:3135441-3135460 Msa1089540:CDS 30.0%
TATCACACAAAAACAGAACA+GGG - chr7_3:3135442-3135461 Msa1089540:CDS 30.0%
GGAAAGAAACAAATAAAGAC+CGG - chr7_3:3135464-3135483 Msa1089540:CDS 30.0%
TTTGGGAAATTTCCATTCAA+AGG + chr7_3:3135702-3135721 None:intergenic 30.0%
! CGAAACCCATAAATTTTAAG+TGG + chr7_3:3135850-3135869 None:intergenic 30.0%
TCAGAGAATTTAGATAGTTC+TGG - chr7_3:3135985-3136004 Msa1089540:intron 30.0%
!! TAGATAGTTCTGGAAATGTA+AGG - chr7_3:3135995-3136014 Msa1089540:intron 30.0%
ATTCACAAGTTACTGCATTA+GGG - chr7_3:3136039-3136058 Msa1089540:intron 30.0%
TAAAACCTTCAGCAGAAAAT+TGG + chr7_3:3136118-3136137 None:intergenic 30.0%
CAATCTTACCTTGCAATTAA+AGG + chr7_3:3136214-3136233 None:intergenic 30.0%
AATATAGCTTAGAGCATGAA+AGG - chr7_3:3136406-3136425 Msa1089540:intron 30.0%
ATATAGCTTAGAGCATGAAA+GGG - chr7_3:3136407-3136426 Msa1089540:intron 30.0%
!! TGAATTTTTCAGCCATATGA+AGG + chr7_3:3136775-3136794 None:intergenic 30.0%
TTCATATGGCTGAAAAATTC+AGG - chr7_3:3136774-3136793 Msa1089540:CDS 30.0%
CTGATTTACTATGTTTGTGT+TGG - chr7_3:3136928-3136947 Msa1089540:CDS 30.0%
CAGCAATGCTTATTATTTGA+TGG + chr7_3:3136971-3136990 None:intergenic 30.0%
!!! AGTCTCTTGTTTTGCATTAT+GGG + chr7_3:3137147-3137166 None:intergenic 30.0%
!!! AAGTCTCTTGTTTTGCATTA+TGG + chr7_3:3137148-3137167 None:intergenic 30.0%
AAATCAATCAGAGAATCAGA+TGG + chr7_3:3137336-3137355 None:intergenic 30.0%
TTCTCAAGGTAAAACAAATC+AGG + chr7_3:3137529-3137548 None:intergenic 30.0%
!!! TGATTTGTTTTACCTTGAGA+AGG - chr7_3:3137528-3137547 Msa1089540:five_prime_UTR 30.0%
!!! GATTTGTTTTACCTTGAGAA+GGG - chr7_3:3137529-3137548 Msa1089540:five_prime_UTR 30.0%
!! TTTCTAGCCTTGTAATATAC+AGG + chr7_3:3137694-3137713 None:intergenic 30.0%
!!! ACAATTTTACATGAGTTGGT+GGG + chr7_3:3137796-3137815 None:intergenic 30.0%
!! TACAATTTTACATGAGTTGG+TGG + chr7_3:3137797-3137816 None:intergenic 30.0%
AGTAATCAGAGTGAGAAAAG+AGG + chr7_3:3132688-3132707 None:intergenic 35.0%
! GTTTCTGAAGGGAAAGAAAT+GGG + chr7_3:3132751-3132770 None:intergenic 35.0%
! AGTTTCTGAAGGGAAAGAAA+TGG + chr7_3:3132752-3132771 None:intergenic 35.0%
GTCAAGAGAGAAAAAGTCAA+AGG + chr7_3:3132789-3132808 None:intergenic 35.0%
! TTGGTTTGATTATGCTGCTT+TGG - chr7_3:3132997-3133016 Msa1089540:CDS 35.0%
! TGTGTACTCTTGGAATTTTG+TGG - chr7_3:3133234-3133253 Msa1089540:intron 35.0%
TGTTCAAACTTATAACCTCG+AGG + chr7_3:3133642-3133661 None:intergenic 35.0%
! GAACAAGCTGAGTTCTAATT+TGG - chr7_3:3133657-3133676 Msa1089540:intron 35.0%
AATTCCCTCCACAATGATAT+CGG + chr7_3:3133722-3133741 None:intergenic 35.0%
GAATTCCGGTGAAAATTCAT+CGG - chr7_3:3133737-3133756 Msa1089540:intron 35.0%
AAAATTCATCGGTGCATTCT+AGG - chr7_3:3133748-3133767 Msa1089540:intron 35.0%
AAAGGATTGTCGAAGAATGA+AGG - chr7_3:3133817-3133836 Msa1089540:intron 35.0%
AAGGATTGTCGAAGAATGAA+GGG - chr7_3:3133818-3133837 Msa1089540:intron 35.0%
TCATAACCAACTTTGCCATA+AGG + chr7_3:3133874-3133893 None:intergenic 35.0%
TTCTTGAGCTATGCATATAG+TGG - chr7_3:3133907-3133926 Msa1089540:intron 35.0%
TAAACTTAAACCCTCTCCAA+TGG - chr7_3:3133930-3133949 Msa1089540:intron 35.0%
! ACCTGCAATTAATTTTGCTG+TGG - chr7_3:3133999-3134018 Msa1089540:intron 35.0%
TCCACAGCAAAATTAATTGC+AGG + chr7_3:3134003-3134022 None:intergenic 35.0%
!! GATACTTTTTGGACACGTAT+CGG - chr7_3:3134285-3134304 Msa1089540:intron 35.0%
!! ATACTTTTTGGACACGTATC+GGG - chr7_3:3134286-3134305 Msa1089540:intron 35.0%
TATCAGTATCCGATATGTGT+CGG - chr7_3:3134323-3134342 Msa1089540:intron 35.0%
GCATAATTGGCATCTTATGT+TGG - chr7_3:3134725-3134744 Msa1089540:intron 35.0%
CATCTTATGTTGGGCATATT+TGG - chr7_3:3134735-3134754 Msa1089540:intron 35.0%
AGACGTCTTCTTAACTTTGT+AGG - chr7_3:3134854-3134873 Msa1089540:intron 35.0%
GACGTCTTCTTAACTTTGTA+GGG - chr7_3:3134855-3134874 Msa1089540:intron 35.0%
TCTTCTTAACTTTGTAGGGA+AGG - chr7_3:3134859-3134878 Msa1089540:intron 35.0%
! AGATGTCATTTCAATCCTCA+TGG - chr7_3:3134892-3134911 Msa1089540:CDS 35.0%
!! AACTTTTTCTGAGAGCTCAT+GGG + chr7_3:3135014-3135033 None:intergenic 35.0%
!! TAACTTTTTCTGAGAGCTCA+TGG + chr7_3:3135015-3135034 None:intergenic 35.0%
ACGAATCACTAGAATTCACA+AGG - chr7_3:3135105-3135124 Msa1089540:CDS 35.0%
GACATTACTTTAGATGAAGC+TGG - chr7_3:3135178-3135197 Msa1089540:CDS 35.0%
GAACTTCAGAAACAACCTTA+GGG + chr7_3:3135234-3135253 None:intergenic 35.0%
AGAACTTCAGAAACAACCTT+AGG + chr7_3:3135235-3135254 None:intergenic 35.0%
!! AAGGTTGTTTCTGAAGTTCT+TGG - chr7_3:3135235-3135254 Msa1089540:CDS 35.0%
!! TGTTTCTGAAGTTCTTGGAT+TGG - chr7_3:3135240-3135259 Msa1089540:CDS 35.0%
!! GTTTCTGAAGTTCTTGGATT+GGG - chr7_3:3135241-3135260 Msa1089540:CDS 35.0%
GTTTGGCTAATGTCAATCTT+CGG - chr7_3:3135263-3135282 Msa1089540:CDS 35.0%
ATAGTATCGCTTCTTACGAA+AGG - chr7_3:3135343-3135362 Msa1089540:CDS 35.0%
TAGTATCGCTTCTTACGAAA+GGG - chr7_3:3135344-3135363 Msa1089540:CDS 35.0%
!! AGAGTGCTGTTAGTATTTGT+AGG - chr7_3:3135398-3135417 Msa1089540:CDS 35.0%
ATCACACAAAAACAGAACAG+GGG - chr7_3:3135443-3135462 Msa1089540:CDS 35.0%
CAAGAACATCAATGCATATC+CGG + chr7_3:3135486-3135505 None:intergenic 35.0%
TTCTTGAAAGAGAAATGCGA+AGG - chr7_3:3135500-3135519 Msa1089540:CDS 35.0%
GAACATAAGCAAGAAGTTGA+AGG + chr7_3:3135624-3135643 None:intergenic 35.0%
TGTTCCATATATTGTTGTCG+TGG - chr7_3:3135639-3135658 Msa1089540:intron 35.0%
TGATCCACGACAACAATATA+TGG + chr7_3:3135646-3135665 None:intergenic 35.0%
GAAATTTCCATTCAAAGGCA+TGG + chr7_3:3135697-3135716 None:intergenic 35.0%
TGTTTGTGAAAAATGCCACT+CGG - chr7_3:3135819-3135838 Msa1089540:intron 35.0%
AATAAAGCTGGCAAATCCAA+TGG + chr7_3:3135918-3135937 None:intergenic 35.0%
!!! GCCAGCTTTATTGATTTTCA+CGG - chr7_3:3135926-3135945 Msa1089540:intron 35.0%
ACCGTGAAAATCAATAAAGC+TGG + chr7_3:3135930-3135949 None:intergenic 35.0%
GATTCACAAGTTACTGCATT+AGG - chr7_3:3136038-3136057 Msa1089540:intron 35.0%
ATTAGCGTCCTTTAATTGCA+AGG - chr7_3:3136203-3136222 Msa1089540:intron 35.0%
TTACTATAAAGCTCCTTCCA+TGG + chr7_3:3136277-3136296 None:intergenic 35.0%
!!! AGTAACAGGTTGCTGTTTTT+AGG - chr7_3:3136292-3136311 Msa1089540:intron 35.0%
!!! GTAACAGGTTGCTGTTTTTA+GGG - chr7_3:3136293-3136312 Msa1089540:intron 35.0%
TAAGATGAATCCAATGACCA+AGG + chr7_3:3136327-3136346 None:intergenic 35.0%
TTGGTCATTGGATTCATCTT+AGG - chr7_3:3136326-3136345 Msa1089540:intron 35.0%
GAAGAAGTCTTAACTGAGTA+AGG - chr7_3:3136435-3136454 Msa1089540:CDS 35.0%
! GAAGAAGTTCTTGATGCTTT+TGG - chr7_3:3136593-3136612 Msa1089540:CDS 35.0%
AGTCAACATGAAAATCTCTC+TGG + chr7_3:3136677-3136696 None:intergenic 35.0%
!! ATTTTTCAGCCATATGAAGG+TGG + chr7_3:3136772-3136791 None:intergenic 35.0%
AATACCAGCATAAACAAGAC+AGG + chr7_3:3136856-3136875 None:intergenic 35.0%
TTCCAAAGGGAAAAATAGTC+TGG + chr7_3:3137013-3137032 None:intergenic 35.0%
AAGGTTCAAACGGAAACTTA+AGG - chr7_3:3137100-3137119 Msa1089540:five_prime_UTR 35.0%
AGGTTCAAACGGAAACTTAA+GGG - chr7_3:3137101-3137120 Msa1089540:five_prime_UTR 35.0%
!! CAAGAGACTTATTTCTAGGA+TGG - chr7_3:3137158-3137177 Msa1089540:five_prime_UTR 35.0%
! GCAATTACCTGTTTTCATCA+GGG + chr7_3:3137187-3137206 None:intergenic 35.0%
! TGCAATTACCTGTTTTCATC+AGG + chr7_3:3137188-3137207 None:intergenic 35.0%
ATAGTATCCTCTTATGGTCA+CGG - chr7_3:3137223-3137242 Msa1089540:five_prime_UTR 35.0%
TCTCTATAACGATGTGGATT+CGG - chr7_3:3137281-3137300 Msa1089540:five_prime_UTR 35.0%
CTGTCTTCAATGTTCTTATG+TGG - chr7_3:3137425-3137444 Msa1089540:five_prime_UTR 35.0%
TCTTCAATGTTCTTATGTGG+TGG - chr7_3:3137428-3137447 Msa1089540:five_prime_UTR 35.0%
CTTCAATGTTCTTATGTGGT+GGG - chr7_3:3137429-3137448 Msa1089540:five_prime_UTR 35.0%
CAAGGTAAAACAAATCAGGT+AGG + chr7_3:3137525-3137544 None:intergenic 35.0%
GCTTAAAGATGATGTCAACA+AGG - chr7_3:3137594-3137613 Msa1089540:five_prime_UTR 35.0%
GTAATATACAGGCTCTCTAA+GGG + chr7_3:3137683-3137702 None:intergenic 35.0%
TGTAATATACAGGCTCTCTA+AGG + chr7_3:3137684-3137703 None:intergenic 35.0%
TAGAGAGCCTGTATATTACA+AGG - chr7_3:3137684-3137703 Msa1089540:five_prime_UTR 35.0%
CTGAGACATTCAACATATCG+TGG + chr7_3:3132660-3132679 None:intergenic 40.0%
!! GTTTGATTATGCTGCTTTGG+TGG - chr7_3:3133000-3133019 Msa1089540:CDS 40.0%
! ACTTTTGAGCTGTGTACTCT+TGG - chr7_3:3133224-3133243 Msa1089540:intron 40.0%
TCATCTTCGCACTTGTCAAA+TGG - chr7_3:3133568-3133587 Msa1089540:intron 40.0%
AGGGCATATGTTGTGACTAA+TGG + chr7_3:3133596-3133615 None:intergenic 40.0%
AGTCACAACATATGCCCTAA+TGG - chr7_3:3133598-3133617 Msa1089540:intron 40.0%
TATCATTGTGGAGGGAATTC+CGG - chr7_3:3133723-3133742 Msa1089540:intron 40.0%
!! ATGCACCGATGAATTTTCAC+CGG + chr7_3:3133745-3133764 None:intergenic 40.0%
!! TTGAGCGATTTGTTGCCTTA+TGG - chr7_3:3133856-3133875 Msa1089540:intron 40.0%
TTGTTGCCTTATGGCAAAGT+TGG - chr7_3:3133865-3133884 Msa1089540:intron 40.0%
TGGAAAAGTGATACCAACTC+TGG + chr7_3:3134057-3134076 None:intergenic 40.0%
!!! AGAGTTGGTATCACTTTTCC+AGG - chr7_3:3134056-3134075 Msa1089540:intron 40.0%
TACGGAACACGTATTGTATC+CGG - chr7_3:3134156-3134175 Msa1089540:intron 40.0%
ATGACAGTTGCGTCTTTAGT+TGG - chr7_3:3134187-3134206 Msa1089540:intron 40.0%
ATGATTCAGAACATGGGAAG+AGG - chr7_3:3134523-3134542 Msa1089540:intron 40.0%
!! CGAGTTGATTCAGTTGACAA+TGG + chr7_3:3134925-3134944 None:intergenic 40.0%
TCTCAATTGAGATCTGGTCA+AGG + chr7_3:3134982-3135001 None:intergenic 40.0%
GCTCTTTCTCAATTGAGATC+TGG + chr7_3:3134988-3135007 None:intergenic 40.0%
!! ACTTTTTCTGAGAGCTCATG+GGG + chr7_3:3135013-3135032 None:intergenic 40.0%
! CGTTTTCATCATCCTGATGA+AGG + chr7_3:3135054-3135073 None:intergenic 40.0%
CACTAGAATTCACAAGGCAT+TGG - chr7_3:3135111-3135130 Msa1089540:CDS 40.0%
! TGAAGTTCTTGGATTGGGTT+TGG - chr7_3:3135246-3135265 Msa1089540:CDS 40.0%
TCAATCTTCGGAATTCTCGA+GGG - chr7_3:3135275-3135294 Msa1089540:CDS 40.0%
AGTATCGCTTCTTACGAAAG+GGG - chr7_3:3135345-3135364 Msa1089540:CDS 40.0%
! GTGCTGTTAGTATTTGTAGG+AGG - chr7_3:3135401-3135420 Msa1089540:CDS 40.0%
AGAAATGCGAAGGAATCCTT+TGG - chr7_3:3135510-3135529 Msa1089540:CDS 40.0%
CAAGGTACAAAAGCTTCATG+TGG + chr7_3:3135579-3135598 None:intergenic 40.0%
! CTTTTGTACCTTGAGAACAG+AGG - chr7_3:3135586-3135605 Msa1089540:CDS 40.0%
TTCGTTTCCATGCCTTTGAA+TGG - chr7_3:3135687-3135706 Msa1089540:intron 40.0%
AAACTCCAAAATGGGAAGCA+AGG + chr7_3:3135796-3135815 None:intergenic 40.0%
!! TTTTAAGTGGTTCTTCCGAG+TGG + chr7_3:3135837-3135856 None:intergenic 40.0%
TCTTTAACTCCTTGTGCAAC+TGG - chr7_3:3135877-3135896 Msa1089540:intron 40.0%
!! TAGTTCTGGAAATGTAAGGC+TGG - chr7_3:3135999-3136018 Msa1089540:intron 40.0%
GGAAATGTAAGGCTGGAATT+TGG - chr7_3:3136006-3136025 Msa1089540:intron 40.0%
TAATTCCCTTGCGAGTGATT+AGG - chr7_3:3136136-3136155 Msa1089540:intron 40.0%
CAAATCCTAATCACTCGCAA+GGG + chr7_3:3136144-3136163 None:intergenic 40.0%
!! TTTGCTGTTGCATTACGAAG+AGG - chr7_3:3136160-3136179 Msa1089540:intron 40.0%
! GGAAGGAGCTTTATAGTAAC+AGG - chr7_3:3136278-3136297 Msa1089540:intron 40.0%
!!! TTTTTAGGGTTCTTGCTCCT+TGG - chr7_3:3136307-3136326 Msa1089540:intron 40.0%
CCTTAATCAGTGAAGACAGA+TGG + chr7_3:3136478-3136497 None:intergenic 40.0%
! CCATCTGTCTTCACTGATTA+AGG - chr7_3:3136475-3136494 Msa1089540:CDS 40.0%
AGCACTCAGTGAAAAGGATT+AGG - chr7_3:3136508-3136527 Msa1089540:CDS 40.0%
AGGAGCAACTGATCTTATAG+AGG - chr7_3:3136571-3136590 Msa1089540:CDS 40.0%
AAACAAGGCAAAATCGATGC+TGG + chr7_3:3136638-3136657 None:intergenic 40.0%
!! TGCCAGACTATTTTTCCCTT+TGG - chr7_3:3137008-3137027 Msa1089540:five_prime_UTR 40.0%
! TGGCTAATTTGGCTTCCAAA+GGG + chr7_3:3137026-3137045 None:intergenic 40.0%
! ATGGCTAATTTGGCTTCCAA+AGG + chr7_3:3137027-3137046 None:intergenic 40.0%
TTTGGAAGCCAAATTAGCCA+TGG - chr7_3:3137026-3137045 Msa1089540:five_prime_UTR 40.0%
TGCAATGTCCATGGCTAATT+TGG + chr7_3:3137037-3137056 None:intergenic 40.0%
TCGGCATCAAAAGGTTCAAA+CGG - chr7_3:3137090-3137109 Msa1089540:five_prime_UTR 40.0%
TTCAAACGGAAACTTAAGGG+AGG - chr7_3:3137104-3137123 Msa1089540:five_prime_UTR 40.0%
!! GAGACTTATTTCTAGGATGG+AGG - chr7_3:3137161-3137180 Msa1089540:five_prime_UTR 40.0%
GTGACTTCTCTATAACGATG+TGG - chr7_3:3137275-3137294 Msa1089540:five_prime_UTR 40.0%
! ATGTGGATTCGGTTAACTCT+GGG - chr7_3:3137292-3137311 Msa1089540:five_prime_UTR 40.0%
CGGTTAACTCTGGGTTTATA+CGG - chr7_3:3137301-3137320 Msa1089540:five_prime_UTR 40.0%
CTTGACTCTTTGCTCTTCTT+GGG + chr7_3:3137557-3137576 None:intergenic 40.0%
TCTTGACTCTTTGCTCTTCT+TGG + chr7_3:3137558-3137577 None:intergenic 40.0%
AAGAAGAGCAAAGAGTCAAG+AGG - chr7_3:3137557-3137576 Msa1089540:five_prime_UTR 40.0%
GACAACGAAAACGAAGAGAT+AGG + chr7_3:3137848-3137867 None:intergenic 40.0%
AACCCAGAGAGAGAGAATCA+CGG + chr7_3:3132812-3132831 None:intergenic 45.0%
ATCATGTGTTATGTGCCGTG+AGG - chr7_3:3133270-3133289 Msa1089540:intron 45.0%
ATGGTAGCTGCAAAACCTCA+CGG + chr7_3:3133288-3133307 None:intergenic 45.0%
! TGGTGATGCCGATATCATTG+TGG - chr7_3:3133711-3133730 Msa1089540:intron 45.0%
TGATGCCGATATCATTGTGG+AGG - chr7_3:3133714-3133733 Msa1089540:intron 45.0%
GATGCCGATATCATTGTGGA+GGG - chr7_3:3133715-3133734 Msa1089540:intron 45.0%
ATCGGTGCATTCTAGGTTCT+AGG - chr7_3:3133755-3133774 Msa1089540:intron 45.0%
ACTTAAACCCTCTCCAATGG+AGG - chr7_3:3133933-3133952 Msa1089540:intron 45.0%
ACACATGTAGACACCTCCAT+TGG + chr7_3:3133949-3133968 None:intergenic 45.0%
GTTTGTGCTCATGATGCTTG+CGG - chr7_3:3133976-3133995 Msa1089540:intron 45.0%
ACGGAACACGTATTGTATCC+GGG - chr7_3:3134157-3134176 Msa1089540:intron 45.0%
TAAAGACGCAACTGTCATCC+GGG + chr7_3:3134185-3134204 None:intergenic 45.0%
CTAAAGACGCAACTGTCATC+CGG + chr7_3:3134186-3134205 None:intergenic 45.0%
! AGTATCCGATATGTGTCGGT+CGG - chr7_3:3134327-3134346 Msa1089540:intron 45.0%
GACAATGGAAAGCAACCATG+AGG + chr7_3:3134910-3134929 None:intergenic 45.0%
TGCCACTCTGTCAACACATT+GGG + chr7_3:3134951-3134970 None:intergenic 45.0%
TGAAAACGATGCTCCTGTAG+TGG - chr7_3:3135066-3135085 Msa1089540:CDS 45.0%
AACAACCTTAGGGTCACAGT+GGG + chr7_3:3135224-3135243 None:intergenic 45.0%
AAACAACCTTAGGGTCACAG+TGG + chr7_3:3135225-3135244 None:intergenic 45.0%
GTCAATCTTCGGAATTCTCG+AGG - chr7_3:3135274-3135293 Msa1089540:CDS 45.0%
AATTGAAGGCTCCTTACGCA+TGG + chr7_3:3135323-3135342 None:intergenic 45.0%
! GCATCGGATTTGACTTTCGA+TGG - chr7_3:3135373-3135392 Msa1089540:CDS 45.0%
GTATTTGTAGGAGGTTGACG+AGG - chr7_3:3135410-3135429 Msa1089540:CDS 45.0%
GTACCTTGAGAACAGAGGTA+TGG - chr7_3:3135591-3135610 Msa1089540:CDS 45.0%
TCACCATACCTCTGTTCTCA+AGG + chr7_3:3135597-3135616 None:intergenic 45.0%
! GTGATCCTTGCTTCCCATTT+TGG - chr7_3:3135788-3135807 Msa1089540:intron 45.0%
ATCCAATGGTCAGCTTTCTG+AGG + chr7_3:3135904-3135923 None:intergenic 45.0%
GTAAGGCTGGAATTTGGAAG+TGG - chr7_3:3136012-3136031 Msa1089540:intron 45.0%
AGGAATTCAGGCGCAAACAA+AGG - chr7_3:3136091-3136110 Msa1089540:intron 45.0%
GGAATTCAGGCGCAAACAAA+GGG - chr7_3:3136092-3136111 Msa1089540:intron 45.0%
! AAGGGCCAATTTTCTGCTGA+AGG - chr7_3:3136110-3136129 Msa1089540:intron 45.0%
GCAAATCCTAATCACTCGCA+AGG + chr7_3:3136145-3136164 None:intergenic 45.0%
! GAGGTCACACGTTTGAGTTA+TGG - chr7_3:3136179-3136198 Msa1089540:intron 45.0%
TTCCATGGTACATGACGAAG+AGG + chr7_3:3136262-3136281 None:intergenic 45.0%
TCTTCGTCATGTACCATGGA+AGG - chr7_3:3136261-3136280 Msa1089540:intron 45.0%
CTTAGAGCATGAAAGGGAGA+AGG - chr7_3:3136413-3136432 Msa1089540:intron 45.0%
TGAGTGAGCACTCAGTGAAA+AGG - chr7_3:3136502-3136521 Msa1089540:CDS 45.0%
AGCTGGAGCAAGAACAAGTA+TGG + chr7_3:3136543-3136562 None:intergenic 45.0%
!! ATCCGAGTTTGCTGGTCTTT+CGG - chr7_3:3137071-3137090 Msa1089540:five_prime_UTR 45.0%
! GATGTGGATTCGGTTAACTC+TGG - chr7_3:3137291-3137310 Msa1089540:five_prime_UTR 45.0%
! GCGCTACTTTCCTAATTGCT+CGG - chr7_3:3137471-3137490 Msa1089540:five_prime_UTR 45.0%
AAAGCTGAGTTTAGTCGCTC+TGG - chr7_3:3137631-3137650 Msa1089540:five_prime_UTR 45.0%
AAGCTGAGTTTAGTCGCTCT+GGG - chr7_3:3137632-3137651 Msa1089540:five_prime_UTR 45.0%
!!! TATTTTTTTTTAATTAAAAC+TGG + chr7_3:3136717-3136736 None:intergenic 5.0%
GACTGTACGCGCGTAATAGA+TGG + chr7_3:3132592-3132611 None:intergenic 50.0%
ACCCGTGATTCTCTCTCTCT+GGG - chr7_3:3132807-3132826 Msa1089540:CDS 50.0%
ACCCAGAGAGAGAGAATCAC+GGG + chr7_3:3132811-3132830 None:intergenic 50.0%
!! TTATGCTGCTTTGGTGGCTC+TGG - chr7_3:3133006-3133025 Msa1089540:CDS 50.0%
GAGCATGATCGGAGCCATTA+GGG + chr7_3:3133615-3133634 None:intergenic 50.0%
CTCGAGGTTACGAGCATGAT+CGG + chr7_3:3133626-3133645 None:intergenic 50.0%
GTAGACACCTCCATTGGAGA+GGG + chr7_3:3133943-3133962 None:intergenic 50.0%
TGTAGACACCTCCATTGGAG+AGG + chr7_3:3133944-3133963 None:intergenic 50.0%
ACGTATTGTATCCGGGATCC+CGG - chr7_3:3134164-3134183 Msa1089540:intron 50.0%
CTTTGTAGGGAAGGCTCTTG+TGG - chr7_3:3134868-3134887 Msa1089540:intron 50.0%
! TGCCCAATGTGTTGACAGAG+TGG - chr7_3:3134946-3134965 Msa1089540:CDS 50.0%
! GTGCCACTCTGTCAACACAT+TGG + chr7_3:3134952-3134971 None:intergenic 50.0%
TGTTGACAGAGTGGCACGAT+CGG - chr7_3:3134955-3134974 Msa1089540:CDS 50.0%
CATCATCCTGATGAAGGTCG+CGG + chr7_3:3135048-3135067 None:intergenic 50.0%
! AGGGACAAAGTGTCCACTAC+AGG + chr7_3:3135082-3135101 None:intergenic 50.0%
TCACATTGCTGCCATGCGTA+AGG - chr7_3:3135309-3135328 Msa1089540:CDS 50.0%
TACGAAAGGGGCTTGTGCAT+CGG - chr7_3:3135357-3135376 Msa1089540:CDS 50.0%
ACAGAGGGATCTGTAGCCAA+AGG + chr7_3:3135529-3135548 None:intergenic 50.0%
ACTGTGTGGGAAGACACAGA+GGG + chr7_3:3135544-3135563 None:intergenic 50.0%
GAGATCATCAGCCACTGTGT+GGG + chr7_3:3135557-3135576 None:intergenic 50.0%
TTGTCGTGGATCAAGCTTCG+AGG - chr7_3:3135653-3135672 Msa1089540:intron 50.0%
!! TTCTGAGGTCCAGTTGCACA+AGG + chr7_3:3135889-3135908 None:intergenic 50.0%
GACCTCAGAAAGCTGACCAT+TGG - chr7_3:3135899-3135918 Msa1089540:intron 50.0%
GGCTGGAATTTGGAAGTGGT+TGG - chr7_3:3136016-3136035 Msa1089540:intron 50.0%
GACCTCTTCGTCATGTACCA+TGG - chr7_3:3136257-3136276 Msa1089540:intron 50.0%
GGTTCTTGCTCCTTGGTCAT+TGG - chr7_3:3136314-3136333 Msa1089540:intron 50.0%
CTTGCTCCAGCTCTCAGATT+AGG - chr7_3:3136551-3136570 Msa1089540:CDS 50.0%
GTTGCTCCTAATCTGAGAGC+TGG + chr7_3:3136560-3136579 None:intergenic 50.0%
!! CAGGCCTGTCTTGTTTATGC+TGG - chr7_3:3136849-3136868 Msa1089540:CDS 50.0%
GAGACAACATCCGAGTTTGC+TGG - chr7_3:3137063-3137082 Msa1089540:five_prime_UTR 50.0%
TGCCGAAAGACCAGCAAACT+CGG + chr7_3:3137076-3137095 None:intergenic 50.0%
!! GCTGGTCTTTCGGCATCAAA+AGG - chr7_3:3137081-3137100 Msa1089540:five_prime_UTR 50.0%
ATGGAGGCCCTGATGAAAAC+AGG - chr7_3:3137177-3137196 Msa1089540:five_prime_UTR 50.0%
TCGAGCACTTCCGAGCAATT+AGG + chr7_3:3137484-3137503 None:intergenic 50.0%
!! GGAAGTGCTCGACAAGTTCA+TGG - chr7_3:3137492-3137511 Msa1089540:five_prime_UTR 50.0%
AGTGCTCGACAAGTTCATGG+AGG - chr7_3:3137495-3137514 Msa1089540:five_prime_UTR 50.0%
! AGGCTCTCTAAGGGATGAAG+AGG + chr7_3:3137674-3137693 None:intergenic 50.0%
GACCCGTGATTCTCTCTCTC+TGG - chr7_3:3132806-3132825 Msa1089540:CDS 55.0%
CGAGCATGATCGGAGCCATT+AGG + chr7_3:3133616-3133635 None:intergenic 55.0%
CGATCATGCTCGTAACCTCG+AGG - chr7_3:3133624-3133643 Msa1089540:intron 55.0%
!! GAGCACCGACCGACACATAT+CGG + chr7_3:3134335-3134354 None:intergenic 55.0%
!! CACAGTGGGCTACTGCATAG+TGG + chr7_3:3135210-3135229 None:intergenic 55.0%
AGTAGCCCACTGTGACCCTA+AGG - chr7_3:3135216-3135235 Msa1089540:CDS 55.0%
TAGGAGGTTGACGAGGCCAA+AGG - chr7_3:3135417-3135436 Msa1089540:CDS 55.0%
CACTGTGTGGGAAGACACAG+AGG + chr7_3:3135545-3135564 None:intergenic 55.0%
CTCTGTGTCTTCCCACACAG+TGG - chr7_3:3135543-3135562 Msa1089540:CDS 55.0%
GGAGATCATCAGCCACTGTG+TGG + chr7_3:3135558-3135577 None:intergenic 55.0%
GCGCTGAGACCACCTTCATA+TGG - chr7_3:3136760-3136779 Msa1089540:CDS 55.0%
AGCATTGCTGTCTGCTGCAG+TGG - chr7_3:3136981-3137000 Msa1089540:five_prime_UTR 55.0%
CTCTGCACGTGCAATGTCCA+TGG + chr7_3:3137046-3137065 None:intergenic 55.0%
GAAGTCGCCGTGACCATAAG+AGG + chr7_3:3137233-3137252 None:intergenic 55.0%
ATGGTCACGGCGACTTCCAA+TGG - chr7_3:3137236-3137255 Msa1089540:five_prime_UTR 55.0%
GGCGACTTCCAATGGAATCG+CGG - chr7_3:3137244-3137263 Msa1089540:five_prime_UTR 55.0%
GCGACTTCCAATGGAATCGC+GGG - chr7_3:3137245-3137264 Msa1089540:five_prime_UTR 55.0%
CGACTTCCAATGGAATCGCG+GGG - chr7_3:3137246-3137265 Msa1089540:five_prime_UTR 55.0%
! TGGTGGGTGTCAGTCGAGAT+GGG - chr7_3:3137445-3137464 Msa1089540:five_prime_UTR 55.0%
CTTCTTGGGTGCCCTTCTCA+AGG + chr7_3:3137543-3137562 None:intergenic 55.0%
GCAACTGTCATCCGGGATCC+CGG + chr7_3:3134178-3134197 None:intergenic 60.0%
CATCCTGATGAAGGTCGCGG+CGG + chr7_3:3135045-3135064 None:intergenic 60.0%
!! GTGGTGGGTGTCAGTCGAGA+TGG - chr7_3:3137444-3137463 Msa1089540:five_prime_UTR 60.0%
GGTGGGTGTCAGTCGAGATG+GGG - chr7_3:3137446-3137465 Msa1089540:five_prime_UTR 60.0%
CTGCTGCCCCGCGATTCCAT+TGG + chr7_3:3137255-3137274 None:intergenic 65.0%
CAATGGAATCGCGGGGCAGC+AGG - chr7_3:3137253-3137272 Msa1089540:five_prime_UTR 65.0%
GGGTGTCAGTCGAGATGGGG+CGG - chr7_3:3137449-3137468 Msa1089540:five_prime_UTR 65.0%
GCTCCGCCGCGACCTTCATC+AGG - chr7_3:3135039-3135058 Msa1089540:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 3132588 3137903 3132588 ID=Msa1089540;Name=Msa1089540
chr7_3 mRNA 3132588 3137903 3132588 ID=Msa1089540-mRNA-1;Parent=Msa1089540;Name=Msa1089540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=941|1|1|1|1|1|4|183|587
chr7_3 exon 3132588 3133033 3132588 ID=Msa1089540-mRNA-1:exon:1227;Parent=Msa1089540-mRNA-1
chr7_3 exon 3133293 3133490 3133293 ID=Msa1089540-mRNA-1:exon:1226;Parent=Msa1089540-mRNA-1
chr7_3 exon 3134884 3135637 3134884 ID=Msa1089540-mRNA-1:exon:1225;Parent=Msa1089540-mRNA-1
chr7_3 exon 3136414 3137903 3136414 ID=Msa1089540-mRNA-1:exon:1224;Parent=Msa1089540-mRNA-1
chr7_3 five_prime_UTR 3136963 3137903 3136963 ID=Msa1089540-mRNA-1:five_prime_utr;Parent=Msa1089540-mRNA-1
chr7_3 CDS 3136414 3136962 3136414 ID=Msa1089540-mRNA-1:cds;Parent=Msa1089540-mRNA-1
chr7_3 CDS 3134884 3135637 3134884 ID=Msa1089540-mRNA-1:cds;Parent=Msa1089540-mRNA-1
chr7_3 CDS 3133293 3133490 3133293 ID=Msa1089540-mRNA-1:cds;Parent=Msa1089540-mRNA-1
chr7_3 CDS 3132771 3133033 3132771 ID=Msa1089540-mRNA-1:cds;Parent=Msa1089540-mRNA-1
chr7_3 three_prime_UTR 3132588 3132770 3132588 ID=Msa1089540-mRNA-1:three_prime_utr;Parent=Msa1089540-mRNA-1
Gene Sequence

>Msa1089540

ATGGCTAATTCGGCTGAACCCTCTTTGAGCAATAATACATCATCTTCGCACTTGTCAAATGGATCCATTAGTCACAACATATGCCCTAATGGCTCCGATCATGCTCGTAACCTCGAGGTTATAAGTTTGAACAAGCTGAGTTCTAATTTGGAGCAGCTTTTGATTGATTCTGATTATGATTATGGTGATGCCGATATCATTGTGGAGGGAATTCCGGTGAAAATTCATCGGTGCATTCTAGGTTCTAGGAGTAAGTTTTTCCATGAAATATTTAAGAGGGGTAAAGATAAAGGATTGTCGAAGAATGAAGGGAAATTGAAGTATTGTTTGAGCGATTTGTTGCCTTATGGCAAAGTTGGTTATGAAGCTTTTCTTATATTCTTGAGCTATGCATATAGTGGTAAACTTAAACCCTCTCCAATGGAGGTGTCTACATGTGTTGATAATGTTTGTGCTCATGATGCTTGCGGACCTGCAATTAATTTTGCTGTGGAGTTAATGTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTATCACTTTTCCAGAGACGTCTTCTTAACTTTGTAGGGAAGGCTCTTGTGGAAGATGTCATTTCAATCCTCATGGTTGCTTTCCATTGTCAACTGAATCAACTCGTTGCCCAATGTGTTGACAGAGTGGCACGATCGGACCTTGACCAGATCTCAATTGAGAAAGAGCTTCCCCATGAGCTCTCAGAAAAAGTTAAATTGCTCCGCCGCGACCTTCATCAGGATGATGAAAACGATGCTCCTGTAGTGGACACTTTGTCCCTAAAACGAATCACTAGAATTCACAAGGCATTGGACTCAGACGACGTCGAGCTTGTTAAACTTCTTTTAAACGAGTCAGACATTACTTTAGATGAAGCTGGTGCTCTCCACTATGCAGTAGCCCACTGTGACCCTAAGGTTGTTTCTGAAGTTCTTGGATTGGGTTTGGCTAATGTCAATCTTCGGAATTCTCGAGGGTATACAGTGCTTCACATTGCTGCCATGCGTAAGGAGCCTTCAATTATAGTATCGCTTCTTACGAAAGGGGCTTGTGCATCGGATTTGACTTTCGATGGTCAGAGTGCTGTTAGTATTTGTAGGAGGTTGACGAGGCCAAAGGATTATCACACAAAAACAGAACAGGGGAAAGAAACAAATAAAGACCGGATATGCATTGATGTTCTTGAAAGAGAAATGCGAAGGAATCCTTTGGCTACAGATCCCTCTGTGTCTTCCCACACAGTGGCTGATGATCTCCACATGAAGCTTTTGTACCTTGAGAACAGAGTGGCATTTGCCAGACTATTTTTCCCTTTGGAAGCCAAATTAGCCATGGACATTGCACGTGCAGAGACAACATCCGAGTTTGCTGGTCTTTCGGCATCAAAAGGTTCAAACGGAAACTTAAGGGAGGTTGATCTCAATGAAACTCCCATAATGCAAAACAAGAGACTTATTTCTAGGATGGAGGCCCTGATGAAAACAGTCGAGATGGGGCGGCGCTACTTTCCTAATTGCTCGGAAGTGCTCGACAAGTTCATGGAGGATGACCTACCTGATTTGTTTTACCTTGAGAAGGGCACCCAAGAAGAGCAAAGAGTCAAGAGGACGAGATTCGTTGAGCTTAAAGATGATGTCAACAAGGCTTTCAGCAAAGACAAAGCTGAGTTTAGTCGCTCTGGGATTTCATCTTCATCATCCTCTTCATCCCTTAGAGAGCCTGTATATTACAAGGCTAGAAAAATGTGA
Protein sequence

>Msa1089540

MANSAEPSLSNNTSSSHLSNGSISHNICPNGSDHARNLEVISLNKLSSNLEQLLIDSDYDYGDADIIVEGIPVKIHRCILGSRSKFFHEIFKRGKDKGLSKNEGKLKYCLSDLLPYGKVGYEAFLIFLSYAYSGKLKPSPMEVSTCVDNVCAHDACGPAINFAVELMYASSIFQIPELVSLFQRRLLNFVGKALVEDVISILMVAFHCQLNQLVAQCVDRVARSDLDQISIEKELPHELSEKVKLLRRDLHQDDENDAPVVDTLSLKRITRIHKALDSDDVELVKLLLNESDITLDEAGALHYAVAHCDPKVVSEVLGLGLANVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHTKTEQGKETNKDRICIDVLEREMRRNPLATDPSVSSHTVADDLHMKLLYLENRVAFARLFFPLEAKLAMDIARAETTSEFAGLSASKGSNGNLREVDLNETPIMQNKRLISRMEALMKTVEMGRRYFPNCSEVLDKFMEDDLPDLFYLEKGTQEEQRVKRTRFVELKDDVNKAFSKDKAEFSRSGISSSSSSSSLREPVYYKARKM*