AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0278630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278630 MtrunA17_Chr2g0291741 92.903 620 11 2 1 618 1 589 0.0 1164
Msa0278630 MtrunA17_Chr5g0442661 55.897 585 215 5 21 598 23 571 0.0 649
Msa0278630 MtrunA17_Chr2g0299621 41.500 600 282 13 9 595 15 558 2.54e-134 405
Msa0278630 MtrunA17_Chr7g0256321 34.545 385 223 10 42 401 6 386 2.08e-46 171
Msa0278630 MtrunA17_Chr1g0171771 32.812 384 230 9 42 401 6 385 1.98e-44 165
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278630 AT5G45110.1 58.500 600 197 8 1 590 1 558 0.0 659
Msa0278630 AT4G19660.1 57.074 622 201 12 2 611 3 570 0.0 629
Msa0278630 AT4G19660.2 54.700 649 201 13 2 611 3 597 0.0 614
Msa0278630 AT5G45110.2 57.014 556 188 8 1 550 1 511 0.0 587
Msa0278630 AT1G64280.1 38.366 563 298 8 39 593 42 563 1.17e-118 365
Msa0278630 AT4G26120.2 38.502 574 300 11 39 604 45 573 1.90e-116 360
Msa0278630 AT4G26120.1 38.502 574 300 11 39 604 44 572 1.97e-116 360
Msa0278630 AT3G57130.1 33.858 381 227 8 42 401 8 384 4.38e-50 181
Msa0278630 AT2G41370.1 33.756 394 227 10 37 401 3 391 9.01e-47 172
Msa0278630 AT3G57130.2 30.769 156 98 3 42 188 8 162 2.01e-16 78.2

Find 167 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGACTCTTTGCTCTTCT+TGG 0.133695 2_3:+11681845 None:intergenic
TGCAATGTCCATGGCTAATT+TGG 0.171363 2_3:+11682366 None:intergenic
GAACAAGCTGAGTTCTAATT+TGG 0.195265 2_3:-11685748 Msa0278630:CDS
ATTGATTCTGATTATGATTA+TGG 0.207555 2_3:-11685714 Msa0278630:CDS
TATAACTTTACACTATAAAT+TGG 0.243166 2_3:+11681533 None:intergenic
GAAGAAGTTCTTGATGCTTT+TGG 0.243832 2_3:-11682812 Msa0278630:CDS
AAAACAAGAGACTTATTTCT+AGG 0.255152 2_3:-11682246 Msa0278630:CDS
TGTAATATACAGACTCTCTA+AGG 0.263790 2_3:+11681719 None:intergenic
TACCCCTCTTAAATATTTCA+TGG 0.278681 2_3:+11685616 None:intergenic
AAGGTTGTTTCTGAAGTTCT+TGG 0.286176 2_3:-11684170 Msa0278630:CDS
GAAAGCAAAAGTGTGAAATT+TGG 0.294295 2_3:+11686519 None:intergenic
GACCCGTGATTCTCTCTGTC+TGG 0.300772 2_3:-11686599 Msa0278630:five_prime_UTR
GTATAAGAAGATTATGTTAT+AGG 0.303050 2_3:-11685920 Msa0278630:five_prime_UTR
ATCCGAGTTTGCTGGTCTTT+CGG 0.306284 2_3:-11682329 Msa0278630:CDS
CTTGACTCTTTGCTCTTCTT+GGG 0.320433 2_3:+11681846 None:intergenic
TCGAGCACTTCCGAGCAATT+AGG 0.321539 2_3:+11681919 None:intergenic
TCTCAAAATAATGGCTAATT+CGG 0.322919 2_3:-11685886 Msa0278630:exon
TTTAAGAGGGGTAAAGATAA+AGG 0.330980 2_3:-11685606 Msa0278630:CDS
TATCGTTGTGGAGGGAATTC+CGG 0.338868 2_3:-11685682 Msa0278630:CDS
CTTGCTCCAGCTCTCAGATT+AGG 0.339104 2_3:-11682854 Msa0278630:intron
TGAAGTTCTTGGATTGGGTT+TGG 0.339158 2_3:-11684159 Msa0278630:CDS
AGACGTCTTCTTAACTTTGT+AGG 0.350294 2_3:-11684551 Msa0278630:CDS
GTTTCTGAAGTTCTTGGATT+GGG 0.355904 2_3:-11684164 Msa0278630:CDS
CATATAGATTCTCAAAATAA+TGG 0.357360 2_3:-11685895 Msa0278630:exon
AAAATTCATCGGTGCATTCT+AGG 0.360553 2_3:-11685657 Msa0278630:CDS
CGAGCATGATCGGAGCCATT+AGG 0.362185 2_3:+11685792 None:intergenic
GTTTAGAGATTCTATATAAG+AGG 0.362602 2_3:-11685976 Msa0278630:five_prime_UTR
GTTATTAAGCAACTTTGGTT+TGG 0.364289 2_3:-11686224 Msa0278630:five_prime_UTR
AGGGCATATGTTGTGACTAA+TGG 0.365492 2_3:+11685812 None:intergenic
ATCGGTGCATTCTAGGTTCT+AGG 0.371950 2_3:-11685650 Msa0278630:CDS
AATTCCCTCCACAACGATAT+CGG 0.375308 2_3:+11685686 None:intergenic
TTGGTTTGATTATGCTGCTT+TGG 0.376289 2_3:-11686408 Msa0278630:five_prime_UTR
TTATGCTGCTTTGGTGGCTC+TGG 0.378132 2_3:-11686399 Msa0278630:five_prime_UTR
GATCCATGGAAATTACAAAA+AGG 0.395572 2_3:+11686548 None:intergenic
AAAGCTGAGTTTAGTCGCTC+TGG 0.402143 2_3:-11681769 Msa0278630:CDS
ACCCGTGATTCTCTCTGTCT+GGG 0.407181 2_3:-11686598 Msa0278630:five_prime_UTR
TGTTTCTGAAGTTCTTGGAT+TGG 0.410365 2_3:-11684165 Msa0278630:CDS
AGTTTCTGAAGGGAAAGAAA+TGG 0.423976 2_3:+11686656 None:intergenic
TACAAGTTATTAAGCAACTT+TGG 0.427786 2_3:-11686229 Msa0278630:five_prime_UTR
GTTTCTGAAGGGAAAGAAAT+GGG 0.430834 2_3:+11686657 None:intergenic
TCCACAGCAAAATTAATTGC+AGG 0.431240 2_3:+11685405 None:intergenic
TTTATCATATCTCACAATAG+AGG 0.435222 2_3:-11685998 Msa0278630:five_prime_UTR
TTCTCAAGGTAAAACAAATC+AGG 0.437786 2_3:+11681874 None:intergenic
TTGAGCGATTTGTTGCCTTA+TGG 0.438180 2_3:-11685549 Msa0278630:CDS
AGTCACAACATATGCCCTAA+TGG 0.443721 2_3:-11685807 Msa0278630:CDS
GCTCCGCCGCGACCTTCATC+AGG 0.443936 2_3:-11684366 Msa0278630:CDS
ATGGAGGCCCTGATGAAAAC+AGG 0.445853 2_3:-11682223 Msa0278630:intron
GCTCTTTCTCAATTGAGATC+TGG 0.446362 2_3:+11684420 None:intergenic
GGAAGTGCTCGACAAGTTCA+TGG 0.446634 2_3:-11681908 Msa0278630:CDS
TAGTATCGCTTCTTACGAAA+GGG 0.448428 2_3:-11684061 Msa0278630:CDS
TCATCTTCGCACTTGTCAAA+TGG 0.450698 2_3:-11685837 Msa0278630:CDS
GTGGTGGGTGTCAGTCGAGA+TGG 0.451143 2_3:-11681956 Msa0278630:intron
AGAGTGCTGTTAGTATTTGT+AGG 0.451754 2_3:-11684007 Msa0278630:CDS
GACGTCTTCTTAACTTTGTA+GGG 0.452305 2_3:-11684550 Msa0278630:CDS
GAGACAACATCCGAGTTTGC+TGG 0.452844 2_3:-11682337 Msa0278630:CDS
AGAACTTCAGAAACAACCTT+AGG 0.452990 2_3:+11684173 None:intergenic
TCATAACCAACTTTGCCATA+AGG 0.458550 2_3:+11685534 None:intergenic
GCTGGTCTTTCGGCATCAAA+AGG 0.459478 2_3:-11682319 Msa0278630:CDS
AGAAGCGATACTATAATTGA+AGG 0.460936 2_3:+11684071 None:intergenic
CTCGAGGTTACGAGCATGAT+CGG 0.461902 2_3:+11685782 None:intergenic
GAGCATGATCGGAGCCATTA+GGG 0.467051 2_3:+11685793 None:intergenic
TGGTGGGTGTCAGTCGAGAT+GGG 0.469353 2_3:-11681955 Msa0278630:intron
GTTTGGCTAATGTCAATCTT+CGG 0.472297 2_3:-11684142 Msa0278630:CDS
AAAGGATTGTCGAAGAATGA+AGG 0.474320 2_3:-11685588 Msa0278630:CDS
ATAACACAAATCTGAACAAA+TGG 0.476724 2_3:+11686101 None:intergenic
GTTTGATTATGCTGCTTTGG+TGG 0.482700 2_3:-11686405 Msa0278630:five_prime_UTR
CTTTGTAGGGAAGGCTCTTG+TGG 0.482823 2_3:-11684537 Msa0278630:CDS
TGCCACTCTGTCAACACATT+GGG 0.488312 2_3:+11684457 None:intergenic
CAAGAGACTTATTTCTAGGA+TGG 0.490241 2_3:-11682242 Msa0278630:CDS
AGTAATCAGAGTGAGAAAAG+AGG 0.492268 2_3:+11686726 None:intergenic
CTTCTTGGGTGCCCTTCTCA+AGG 0.494673 2_3:+11681860 None:intergenic
GACATTACTTTAGATGAAGC+TGG 0.496309 2_3:-11684227 Msa0278630:CDS
AGGTTCAAACGGAAACTTAA+GGG 0.497387 2_3:-11682299 Msa0278630:CDS
TTTCCATGAAATATTTAAGA+GGG 0.500978 2_3:-11685619 Msa0278630:CDS
TTGTTGCCTTATGGCAAAGT+TGG 0.501023 2_3:-11685540 Msa0278630:CDS
AAGGTTCAAACGGAAACTTA+AGG 0.501661 2_3:-11682300 Msa0278630:CDS
AGGGACAAAGTGTCCACTAC+AGG 0.502128 2_3:+11684326 None:intergenic
AGAAATGCGAAGGAATCCTT+TGG 0.503336 2_3:-11683895 Msa0278630:CDS
TTCTTGAGCTATGCATATAG+TGG 0.505104 2_3:-11685498 Msa0278630:CDS
TACGAAAGGGGCTTGTGCAT+CGG 0.506556 2_3:-11684048 Msa0278630:CDS
CAAGAACATCAATGCATATC+CGG 0.508900 2_3:+11683922 None:intergenic
TCGGCATCAAAAGGTTCAAA+CGG 0.510189 2_3:-11682310 Msa0278630:CDS
GCATCGGATTTGACTTTCGA+TGG 0.514017 2_3:-11684032 Msa0278630:CDS
ATAGTATCGCTTCTTACGAA+AGG 0.524638 2_3:-11684062 Msa0278630:CDS
AAGCTGAGTTTAGTCGCTCT+GGG 0.526051 2_3:-11681768 Msa0278630:CDS
TGCCGAAAGACCAGCAAACT+CGG 0.526961 2_3:+11682327 None:intergenic
CACTAGAATTCACAAGGCAT+TGG 0.529760 2_3:-11684294 Msa0278630:CDS
ATGGCTAATTTGGCTTCCAA+AGG 0.534107 2_3:+11682376 None:intergenic
GCGCTACTTTCCTAATTGCT+CGG 0.534492 2_3:-11681929 Msa0278630:CDS
CTCTGCACGTGCAATGTCCA+TGG 0.539317 2_3:+11682357 None:intergenic
TGGCTAATTTGGCTTCCAAA+GGG 0.539806 2_3:+11682377 None:intergenic
TCACATTGCTGCCATGCGTA+AGG 0.540227 2_3:-11684096 Msa0278630:CDS
CGAGTTGATTCAATTGACAA+TGG 0.543054 2_3:+11684483 None:intergenic
CACAGTGGGCTACTGCATAG+TGG 0.545838 2_3:+11684198 None:intergenic
TCTTCTTAACTTTGTAGGGA+AGG 0.546009 2_3:-11684546 Msa0278630:CDS
CATCATCCTGATGAAGGTCG+CGG 0.548121 2_3:+11684360 None:intergenic
ACACATGTAGACACCTCCAT+TGG 0.548193 2_3:+11685459 None:intergenic
AGTAGCCCACTGTGACCCTA+AGG 0.552063 2_3:-11684189 Msa0278630:CDS
AGATGTCATTTCAATCCTCA+TGG 0.554111 2_3:-11684513 Msa0278630:CDS
GGAAAGAAACAAATAAAGAC+CGG 0.554242 2_3:-11683941 Msa0278630:CDS
GAACTTCAGAAACAACCTTA+GGG 0.555444 2_3:+11684174 None:intergenic
AGGAGCAACTGATCTTATAG+AGG 0.560232 2_3:-11682834 Msa0278630:CDS
AATTGGACAACGAAAACGAA+GGG 0.562944 2_3:+11681550 None:intergenic
GTCAATCTTCGGAATTCTCG+AGG 0.563292 2_3:-11684131 Msa0278630:CDS
AAACAAGGCAAAATCGATGC+TGG 0.564958 2_3:+11682770 None:intergenic
GATGTATTATTGCTCAAAGA+GGG 0.566332 2_3:+11685858 None:intergenic
GTGCCACTCTGTCAACACAT+TGG 0.567094 2_3:+11684456 None:intergenic
GGGTGTCAGTCGAGATGGGG+CGG 0.570433 2_3:-11681951 Msa0278630:intron
TCACCATACCTCTGTTCTCA+AGG 0.571825 2_3:+11683811 None:intergenic
TTTAGAGATTCTATATAAGA+GGG 0.573036 2_3:-11685975 Msa0278630:five_prime_UTR
AAGGATTGTCGAAGAATGAA+GGG 0.575680 2_3:-11685587 Msa0278630:CDS
TGTTGACAGAGTGGCACGAT+CGG 0.578105 2_3:-11684450 Msa0278630:CDS
GTGCTGTTAGTATTTGTAGG+AGG 0.578982 2_3:-11684004 Msa0278630:CDS
TTTGGAAGCCAAATTAGCCA+TGG 0.582434 2_3:-11682374 Msa0278630:CDS
TAGGAGGTTGACGAGGCCAA+AGG 0.585498 2_3:-11683988 Msa0278630:CDS
ACCCAGACAGAGAGAATCAC+GGG 0.586591 2_3:+11686597 None:intergenic
TTCCATGAAATATTTAAGAG+GGG 0.588302 2_3:-11685618 Msa0278630:CDS
AAGAAGAGCAAAGAGTCAAG+AGG 0.588632 2_3:-11681843 Msa0278630:CDS
TAGAGAGTCTGTATATTACA+AGG 0.594151 2_3:-11681716 Msa0278630:CDS
TAAACTTAAACCCTCTCCAA+TGG 0.595072 2_3:-11685475 Msa0278630:CDS
TGATGTATTATTGCTCAAAG+AGG 0.595361 2_3:+11685857 None:intergenic
GTAATATACAGACTCTCTAA+GGG 0.597244 2_3:+11681720 None:intergenic
GGTGGGTGTCAGTCGAGATG+GGG 0.597335 2_3:-11681954 Msa0278630:intron
AGACTCTCTAAGGGATGAAG+AGG 0.598944 2_3:+11681729 None:intergenic
GAGACTTATTTCTAGGATGG+AGG 0.602102 2_3:-11682239 Msa0278630:CDS
AGTATCGCTTCTTACGAAAG+GGG 0.605200 2_3:-11684060 Msa0278630:CDS
TGGAAAAGTGATACCAACTC+TGG 0.609116 2_3:+11685351 None:intergenic
GTTTGTGCTCATGATGCTTG+CGG 0.612341 2_3:-11685429 Msa0278630:CDS
TTCTTGAAAGAGAAATGCGA+AGG 0.612843 2_3:-11683905 Msa0278630:CDS
GAATTCCGGTGAAAATTCAT+CGG 0.614156 2_3:-11685668 Msa0278630:CDS
CTGAGACATTCAACATATCG+TGG 0.614995 2_3:+11686754 None:intergenic
TCTCAATTGAGATCTGGTCA+AGG 0.616130 2_3:+11684426 None:intergenic
CAAGGTACAAAAGCTTCATG+TGG 0.618221 2_3:+11683829 None:intergenic
AAATTTGGTAATGAGATCCA+TGG 0.621511 2_3:+11686534 None:intergenic
CTCTGTGTCTTCCCACACAG+TGG 0.626716 2_3:-11683862 Msa0278630:CDS
CAAGGTAAAACAAATCAGGT+AGG 0.633426 2_3:+11681878 None:intergenic
AATTGAAGGCTCCTTACGCA+TGG 0.634465 2_3:+11684085 None:intergenic
GTAGACACCTCCATTGGAGA+GGG 0.634552 2_3:+11685465 None:intergenic
TGAAAACGATGCTCCTGTAG+TGG 0.635923 2_3:-11684339 Msa0278630:CDS
ACTTAAACCCTCTCCAATGG+AGG 0.636356 2_3:-11685472 Msa0278630:CDS
ATGGTAGCTGCAAAACCTCA+CGG 0.640058 2_3:+11686120 None:intergenic
TGTTCAAACTTATAACCTCG+AGG 0.641337 2_3:+11685766 None:intergenic
GACAACGAAAACGAAGGGAT+AGG 0.648042 2_3:+11681555 None:intergenic
ACAGAGGGATCTGTAGCCAA+AGG 0.651194 2_3:+11683879 None:intergenic
AACAACCTTAGGGTCACAGT+GGG 0.652928 2_3:+11684184 None:intergenic
TCAATCTTCGGAATTCTCGA+GGG 0.655049 2_3:-11684130 Msa0278630:CDS
GCTTAAAGATGATGTCAACA+AGG 0.657265 2_3:-11681806 Msa0278630:CDS
AACCCAGACAGAGAGAATCA+CGG 0.667069 2_3:+11686596 None:intergenic
TGATGCCGATATCGTTGTGG+AGG 0.670899 2_3:-11685691 Msa0278630:CDS
ACGAATCACTAGAATTCACA+AGG 0.672729 2_3:-11684300 Msa0278630:CDS
GACAATGGAAAGCAACCATG+AGG 0.674409 2_3:+11684498 None:intergenic
CACTGTGTGGGAAGACACAG+AGG 0.675475 2_3:+11683863 None:intergenic
TGTAGACACCTCCATTGGAG+AGG 0.677893 2_3:+11685464 None:intergenic
TGCCCAATGTGTTGACAGAG+TGG 0.682710 2_3:-11684459 Msa0278630:CDS
TTCAAACGGAAACTTAAGGG+AGG 0.682937 2_3:-11682296 Msa0278630:CDS
GTATTTGTAGGAGGTTGACG+AGG 0.688711 2_3:-11683995 Msa0278630:CDS
TGGTGATGCCGATATCGTTG+TGG 0.692140 2_3:-11685694 Msa0278630:CDS
GAGATCATCAGCCACTGTGT+GGG 0.692384 2_3:+11683851 None:intergenic
CGATCATGCTCGTAACCTCG+AGG 0.695662 2_3:-11685781 Msa0278630:CDS
GATGCCGATATCGTTGTGGA+GGG 0.699169 2_3:-11685690 Msa0278630:CDS
GGAGATCATCAGCCACTGTG+TGG 0.705139 2_3:+11683850 None:intergenic
AAATTGGACAACGAAAACGA+AGG 0.715338 2_3:+11681549 None:intergenic
AAACAACCTTAGGGTCACAG+TGG 0.718165 2_3:+11684183 None:intergenic
ATCATGTGTTATGTGCCGTG+AGG 0.734049 2_3:-11686135 Msa0278630:five_prime_UTR
ACTGTGTGGGAAGACACAGA+GGG 0.734076 2_3:+11683864 None:intergenic
CATCCTGATGAAGGTCGCGG+CGG 0.747920 2_3:+11684363 None:intergenic
AGTGCTCGACAAGTTCATGG+AGG 0.770013 2_3:-11681905 Msa0278630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG + chr2_3:11685747-11685766 None:intergenic 0.0%
!! ATAAAAAAGATTAATTGATA+AGG + chr2_3:11681978-11681997 None:intergenic 10.0%
!!! ATTTTGTTTTCTTCAATTTT+GGG - chr2_3:11681904-11681923 Msa0278630:CDS 15.0%
!!! TATTATTATCAGATACTTTT+TGG - chr2_3:11683205-11683224 Msa0278630:intron 15.0%
!!! TCTTTTATTTTTGAAGTATT+TGG - chr2_3:11683284-11683303 Msa0278630:intron 15.0%
!!! CTTTTATTTTTGAAGTATTT+GGG - chr2_3:11683285-11683304 Msa0278630:intron 15.0%
!!! TTTTAAACAATATTTTCCTA+AGG + chr2_3:11685276-11685295 None:intergenic 15.0%
!!! TTTTTTAAATTTTCTGTTTC+AGG - chr2_3:11685766-11685785 Msa0278630:CDS 15.0%
!!! TTTATAGTGCAAATTTTAAA+AGG - chr2_3:11686697-11686716 Msa0278630:five_prime_UTR 15.0%
!!! TTATAGTGCAAATTTTAAAA+GGG - chr2_3:11686698-11686717 Msa0278630:five_prime_UTR 15.0%
!! TATAACTTTACACTATAAAT+TGG + chr2_3:11686806-11686825 None:intergenic 15.0%
!!! GATTTTGTTTTCTTCAATTT+TGG - chr2_3:11681903-11681922 Msa0278630:CDS 20.0%
!!! TGTTATTAAGGAACTTTTTT+TGG - chr2_3:11682083-11682102 Msa0278630:intron 20.0%
!! TTTAGAGATTCTATATAAGA+GGG - chr2_3:11682361-11682380 Msa0278630:CDS 20.0%
!! GTATAAGAAGATTATGTTAT+AGG - chr2_3:11682416-11682435 Msa0278630:intron 20.0%
!! CATATAGATTCTCAAAATAA+TGG - chr2_3:11682441-11682460 Msa0278630:intron 20.0%
!!! ATTGATTCTGATTATGATTA+TGG - chr2_3:11682622-11682641 Msa0278630:intron 20.0%
!!! TTTTCCATGAAATATTTAAG+AGG - chr2_3:11682716-11682735 Msa0278630:intron 20.0%
!! TTTCCATGAAATATTTAAGA+GGG - chr2_3:11682717-11682736 Msa0278630:intron 20.0%
!! ATATAGAAAAATGTTCAAGT+GGG + chr2_3:11683332-11683351 None:intergenic 20.0%
!! ATAATATAGAGAAAACAGAA+AGG + chr2_3:11683357-11683376 None:intergenic 20.0%
!!! ATGAAATTTAGTTCAAGTTT+AGG - chr2_3:11683375-11683394 Msa0278630:intron 20.0%
!! GGAATAATTAATTATCTGTT+AGG - chr2_3:11683396-11683415 Msa0278630:intron 20.0%
!!! TAAGAAATTTGTTTTGGAAA+AGG + chr2_3:11683528-11683547 None:intergenic 20.0%
!!! GTATAGTAAGAAATTTGTTT+TGG + chr2_3:11683534-11683553 None:intergenic 20.0%
!!! TTTACTTTTGTTGATTTTGA+AGG - chr2_3:11683581-11683600 Msa0278630:intron 20.0%
!!! TTACTTTTGTTGATTTTGAA+GGG - chr2_3:11683582-11683601 Msa0278630:intron 20.0%
!! AAACAAAAAAACTCCAAAAT+GGG + chr2_3:11684735-11684754 None:intergenic 20.0%
!! AAGAACCACTTAAAATTTAT+GGG - chr2_3:11684773-11684792 Msa0278630:intron 20.0%
!! AGTTCAAAATTACATAAAGT+TGG + chr2_3:11684897-11684916 None:intergenic 20.0%
!! TATTTAATAGTATCCTCTTA+TGG - chr2_3:11686153-11686172 Msa0278630:five_prime_UTR 20.0%
!! AGAAAAATGTGACAAAAAAA+AGG - chr2_3:11686645-11686664 Msa0278630:five_prime_UTR 20.0%
!!! TTTTACAATTTTACATGAGT+TGG + chr2_3:11686736-11686755 None:intergenic 20.0%
! AAAAAGAAGAAGTTTCTGAA+GGG + chr2_3:11681693-11681712 None:intergenic 25.0%
! AAAAAAGAAGAAGTTTCTGA+AGG + chr2_3:11681694-11681713 None:intergenic 25.0%
!!! GAACAAATTAAGCACTTTTT+TGG - chr2_3:11682060-11682079 Msa0278630:intron 25.0%
! TACAAGTTATTAAGCAACTT+TGG - chr2_3:11682107-11682126 Msa0278630:intron 25.0%
! ATAACACAAATCTGAACAAA+TGG + chr2_3:11682238-11682257 None:intergenic 25.0%
! TTTATCATATCTCACAATAG+AGG - chr2_3:11682338-11682357 Msa0278630:CDS 25.0%
! GTTTAGAGATTCTATATAAG+AGG - chr2_3:11682360-11682379 Msa0278630:CDS 25.0%
!!! TGTATAAAGTTTGAGTTTTG+TGG - chr2_3:11682394-11682413 Msa0278630:CDS 25.0%
! TCTCAAAATAATGGCTAATT+CGG - chr2_3:11682450-11682469 Msa0278630:intron 25.0%
! TTCCATGAAATATTTAAGAG+GGG - chr2_3:11682718-11682737 Msa0278630:intron 25.0%
! TCATAGATATAATGTTTACC+TGG + chr2_3:11683008-11683027 None:intergenic 25.0%
!! AAGATGTATTTGAGAAGTAT+TGG - chr2_3:11683153-11683172 Msa0278630:intron 25.0%
! TATAGAAAAATGTTCAAGTG+GGG + chr2_3:11683331-11683350 None:intergenic 25.0%
! CATATAGAAAAATGTTCAAG+TGG + chr2_3:11683333-11683352 None:intergenic 25.0%
! AATCATCATACAAAACATCT+TGG + chr2_3:11683440-11683459 None:intergenic 25.0%
!! AATTCTAGTGATTCGTTTTA+GGG + chr2_3:11684032-11684051 None:intergenic 25.0%
!! AAACAAAATGACTCAGTTTT+GGG + chr2_3:11684650-11684669 None:intergenic 25.0%
!! AAAACAAAATGACTCAGTTT+TGG + chr2_3:11684651-11684670 None:intergenic 25.0%
! CAAACAAAAAAACTCCAAAA+TGG + chr2_3:11684736-11684755 None:intergenic 25.0%
! GAAGAACCACTTAAAATTTA+TGG - chr2_3:11684772-11684791 Msa0278630:intron 25.0%
! ATTTAGCTACAAATGAAACA+AGG + chr2_3:11685584-11685603 None:intergenic 25.0%
!! AAAACAAGAGACTTATTTCT+AGG - chr2_3:11686090-11686109 Msa0278630:five_prime_UTR 25.0%
! TAGAATTGTACATAGAAACA+TGG + chr2_3:11686334-11686353 None:intergenic 25.0%
TCAAGAGAGAAAAAGTCAAA+GGG + chr2_3:11681719-11681738 None:intergenic 30.0%
CATGGAAATTACAAAAAGGT+TGG + chr2_3:11681787-11681806 None:intergenic 30.0%
! CAACCTTTTTGTAATTTCCA+TGG - chr2_3:11681785-11681804 Msa0278630:CDS 30.0%
GATCCATGGAAATTACAAAA+AGG + chr2_3:11681791-11681810 None:intergenic 30.0%
!! AAATTTGGTAATGAGATCCA+TGG + chr2_3:11681805-11681824 None:intergenic 30.0%
! GAAAGCAAAAGTGTGAAATT+TGG + chr2_3:11681820-11681839 None:intergenic 30.0%
! AATTTCACACTTTTGCTTTC+TGG - chr2_3:11681820-11681839 Msa0278630:CDS 30.0%
! ATTTCACACTTTTGCTTTCT+GGG - chr2_3:11681821-11681840 Msa0278630:CDS 30.0%
!!! GTTTTCTTCAATTTTGGGTT+TGG - chr2_3:11681909-11681928 Msa0278630:CDS 30.0%
!!! GCACTTTTTTGGTGTTATTA+AGG - chr2_3:11682071-11682090 Msa0278630:intron 30.0%
GTTATTAAGCAACTTTGGTT+TGG - chr2_3:11682112-11682131 Msa0278630:intron 30.0%
GATGTATTATTGCTCAAAGA+GGG + chr2_3:11682481-11682500 None:intergenic 30.0%
TGATGTATTATTGCTCAAAG+AGG + chr2_3:11682482-11682501 None:intergenic 30.0%
TACCCCTCTTAAATATTTCA+TGG + chr2_3:11682723-11682742 None:intergenic 30.0%
TTTAAGAGGGGTAAAGATAA+AGG - chr2_3:11682730-11682749 Msa0278630:intron 30.0%
TGGTATTTGAAAAATGGAAG+AGG + chr2_3:11682968-11682987 None:intergenic 30.0%
CAACTCTGGTATTTGAAAAA+TGG + chr2_3:11682974-11682993 None:intergenic 30.0%
!! CATTTTTCAAATACCAGAGT+TGG - chr2_3:11682972-11682991 Msa0278630:intron 30.0%
TCTATTGTTAGTTAGACGTA+CGG - chr2_3:11683069-11683088 Msa0278630:intron 30.0%
ATAGAAAAATGTTCAAGTGG+GGG + chr2_3:11683330-11683349 None:intergenic 30.0%
TTGTATGATGATTCAGAACA+TGG - chr2_3:11683447-11683466 Msa0278630:intron 30.0%
TGTATGATGATTCAGAACAT+GGG - chr2_3:11683448-11683467 Msa0278630:intron 30.0%
CCTAAAGAAAGCAAGATATA+TGG + chr2_3:11683637-11683656 None:intergenic 30.0%
CCATATATCTTGCTTTCTTT+AGG - chr2_3:11683634-11683653 Msa0278630:intron 30.0%
TTGCTTTCTTTAGGCATAAT+TGG - chr2_3:11683643-11683662 Msa0278630:intron 30.0%
CATAATTGGCATCTTATGTT+GGG - chr2_3:11683657-11683676 Msa0278630:intron 30.0%
AGTCATATTGTATCTGATCA+AGG - chr2_3:11683722-11683741 Msa0278630:intron 30.0%
ATTGTATCTGATCAAGGTTA+AGG - chr2_3:11683728-11683747 Msa0278630:intron 30.0%
! GAATTCTAGTGATTCGTTTT+AGG + chr2_3:11684033-11684052 None:intergenic 30.0%
AGAAGCGATACTATAATTGA+AGG + chr2_3:11684268-11684287 None:intergenic 30.0%
! GTTTTTGTGTGATAATCCTT+TGG + chr2_3:11684367-11684386 None:intergenic 30.0%
TTATCACACAAAAACAGAAC+AGG - chr2_3:11684372-11684391 Msa0278630:CDS 30.0%
TATCACACAAAAACAGAACA+GGG - chr2_3:11684373-11684392 Msa0278630:CDS 30.0%
GGAAAGAAACAAATAAAGAC+CGG - chr2_3:11684395-11684414 Msa0278630:CDS 30.0%
! TGTTCCATATATTGTTGTTG+TGG - chr2_3:11684570-11684589 Msa0278630:intron 30.0%
TGATCCACAACAACAATATA+TGG + chr2_3:11684577-11684596 None:intergenic 30.0%
TTTGGGAAATTTCCATTCAA+AGG + chr2_3:11684633-11684652 None:intergenic 30.0%
! CGAAACCCATAAATTTTAAG+TGG + chr2_3:11684781-11684800 None:intergenic 30.0%
TCAGAGAATTTAGATAGTTC+TGG - chr2_3:11684916-11684935 Msa0278630:intron 30.0%
!! TAGATAGTTCTGGAAATGTA+AGG - chr2_3:11684926-11684945 Msa0278630:intron 30.0%
TAAAACCTTCAGCAGAAAAT+TGG + chr2_3:11685049-11685068 None:intergenic 30.0%
CAATCTTACCTTGCAATTAA+AGG + chr2_3:11685145-11685164 None:intergenic 30.0%
AATATAGCTTAGAGCATGAA+AGG - chr2_3:11685337-11685356 Msa0278630:intron 30.0%
ATATAGCTTAGAGCATGAAA+GGG - chr2_3:11685338-11685357 Msa0278630:intron 30.0%
!! TGAATTTTTCAGCCATATGA+AGG + chr2_3:11685706-11685725 None:intergenic 30.0%
TTCATATGGCTGAAAAATTC+AGG - chr2_3:11685705-11685724 Msa0278630:CDS 30.0%
AATACCAGCATAAACAAAAC+AGG + chr2_3:11685792-11685811 None:intergenic 30.0%
CTGATTTACTATGTTTGTGT+TGG - chr2_3:11685864-11685883 Msa0278630:CDS 30.0%
CAGCAATGCTTATTATTTGA+TGG + chr2_3:11685907-11685926 None:intergenic 30.0%
!!! AGTCTCTTGTTTTGCATTAT+GGG + chr2_3:11686083-11686102 None:intergenic 30.0%
!!! AAGTCTCTTGTTTTGCATTA+TGG + chr2_3:11686084-11686103 None:intergenic 30.0%
TTCTCAAGGTAAAACAAATC+AGG + chr2_3:11686465-11686484 None:intergenic 30.0%
!!! TGATTTGTTTTACCTTGAGA+AGG - chr2_3:11686464-11686483 Msa0278630:five_prime_UTR 30.0%
!!! GATTTGTTTTACCTTGAGAA+GGG - chr2_3:11686465-11686484 Msa0278630:five_prime_UTR 30.0%
GTAATATACAGACTCTCTAA+GGG + chr2_3:11686619-11686638 None:intergenic 30.0%
TGTAATATACAGACTCTCTA+AGG + chr2_3:11686620-11686639 None:intergenic 30.0%
TAGAGAGTCTGTATATTACA+AGG - chr2_3:11686620-11686639 Msa0278630:five_prime_UTR 30.0%
!!! ACAATTTTACATGAGTTGGT+GGG + chr2_3:11686732-11686751 None:intergenic 30.0%
!! TACAATTTTACATGAGTTGG+TGG + chr2_3:11686733-11686752 None:intergenic 30.0%
AGTAATCAGAGTGAGAAAAG+AGG + chr2_3:11681613-11681632 None:intergenic 35.0%
! GTTTCTGAAGGGAAAGAAAT+GGG + chr2_3:11681682-11681701 None:intergenic 35.0%
! AGTTTCTGAAGGGAAAGAAA+TGG + chr2_3:11681683-11681702 None:intergenic 35.0%
GTCAAGAGAGAAAAAGTCAA+AGG + chr2_3:11681720-11681739 None:intergenic 35.0%
! TTGGTTTGATTATGCTGCTT+TGG - chr2_3:11681928-11681947 Msa0278630:CDS 35.0%
! TGTGTACTCTTGGAATTTTG+TGG - chr2_3:11682165-11682184 Msa0278630:intron 35.0%
TGTTCAAACTTATAACCTCG+AGG + chr2_3:11682573-11682592 None:intergenic 35.0%
! GAACAAGCTGAGTTCTAATT+TGG - chr2_3:11682588-11682607 Msa0278630:intron 35.0%
GAATTCCGGTGAAAATTCAT+CGG - chr2_3:11682668-11682687 Msa0278630:intron 35.0%
AAAATTCATCGGTGCATTCT+AGG - chr2_3:11682679-11682698 Msa0278630:intron 35.0%
AAAGGATTGTCGAAGAATGA+AGG - chr2_3:11682748-11682767 Msa0278630:intron 35.0%
AAGGATTGTCGAAGAATGAA+GGG - chr2_3:11682749-11682768 Msa0278630:intron 35.0%
TCATAACCAACTTTGCCATA+AGG + chr2_3:11682805-11682824 None:intergenic 35.0%
TTCTTGAGCTATGCATATAG+TGG - chr2_3:11682838-11682857 Msa0278630:CDS 35.0%
TAAACTTAAACCCTCTCCAA+TGG - chr2_3:11682861-11682880 Msa0278630:intron 35.0%
! ACCTGCAATTAATTTTGCTG+TGG - chr2_3:11682930-11682949 Msa0278630:intron 35.0%
TCCACAGCAAAATTAATTGC+AGG + chr2_3:11682934-11682953 None:intergenic 35.0%
!! GATACTTTTTGGACACGTAT+CGG - chr2_3:11683216-11683235 Msa0278630:intron 35.0%
!! ATACTTTTTGGACACGTATC+GGG - chr2_3:11683217-11683236 Msa0278630:intron 35.0%
TATCAGTATCCGATATGTGT+CGG - chr2_3:11683254-11683273 Msa0278630:intron 35.0%
GCATAATTGGCATCTTATGT+TGG - chr2_3:11683656-11683675 Msa0278630:intron 35.0%
CATCTTATGTTGGGCATATT+TGG - chr2_3:11683666-11683685 Msa0278630:intron 35.0%
AGACGTCTTCTTAACTTTGT+AGG - chr2_3:11683785-11683804 Msa0278630:intron 35.0%
GACGTCTTCTTAACTTTGTA+GGG - chr2_3:11683786-11683805 Msa0278630:intron 35.0%
TCTTCTTAACTTTGTAGGGA+AGG - chr2_3:11683790-11683809 Msa0278630:intron 35.0%
! AGATGTCATTTCAATCCTCA+TGG - chr2_3:11683823-11683842 Msa0278630:CDS 35.0%
!! CGAGTTGATTCAATTGACAA+TGG + chr2_3:11683856-11683875 None:intergenic 35.0%
!! AACTTTTTCTGAGAGCTCAT+GGG + chr2_3:11683945-11683964 None:intergenic 35.0%
!! TAACTTTTTCTGAGAGCTCA+TGG + chr2_3:11683946-11683965 None:intergenic 35.0%
ACGAATCACTAGAATTCACA+AGG - chr2_3:11684036-11684055 Msa0278630:CDS 35.0%
GACATTACTTTAGATGAAGC+TGG - chr2_3:11684109-11684128 Msa0278630:CDS 35.0%
GAACTTCAGAAACAACCTTA+GGG + chr2_3:11684165-11684184 None:intergenic 35.0%
AGAACTTCAGAAACAACCTT+AGG + chr2_3:11684166-11684185 None:intergenic 35.0%
!! AAGGTTGTTTCTGAAGTTCT+TGG - chr2_3:11684166-11684185 Msa0278630:CDS 35.0%
!! TGTTTCTGAAGTTCTTGGAT+TGG - chr2_3:11684171-11684190 Msa0278630:CDS 35.0%
!! GTTTCTGAAGTTCTTGGATT+GGG - chr2_3:11684172-11684191 Msa0278630:CDS 35.0%
GTTTGGCTAATGTCAATCTT+CGG - chr2_3:11684194-11684213 Msa0278630:CDS 35.0%
ATAGTATCGCTTCTTACGAA+AGG - chr2_3:11684274-11684293 Msa0278630:CDS 35.0%
TAGTATCGCTTCTTACGAAA+GGG - chr2_3:11684275-11684294 Msa0278630:CDS 35.0%
!! AGAGTGCTGTTAGTATTTGT+AGG - chr2_3:11684329-11684348 Msa0278630:CDS 35.0%
ATCACACAAAAACAGAACAG+GGG - chr2_3:11684374-11684393 Msa0278630:CDS 35.0%
CAAGAACATCAATGCATATC+CGG + chr2_3:11684417-11684436 None:intergenic 35.0%
TTCTTGAAAGAGAAATGCGA+AGG - chr2_3:11684431-11684450 Msa0278630:CDS 35.0%
GAACATAAGCAAGAAGTTGA+AGG + chr2_3:11684555-11684574 None:intergenic 35.0%
GAAATTTCCATTCAAAGGCA+TGG + chr2_3:11684628-11684647 None:intergenic 35.0%
TGTTTGTGAAAAATGCCACT+CGG - chr2_3:11684750-11684769 Msa0278630:intron 35.0%
AATAAAGCTGGCAAATCCAA+TGG + chr2_3:11684849-11684868 None:intergenic 35.0%
!!! GCCAGCTTTATTGATTTTCA+CGG - chr2_3:11684857-11684876 Msa0278630:intron 35.0%
ACCGTGAAAATCAATAAAGC+TGG + chr2_3:11684861-11684880 None:intergenic 35.0%
ATTCACAAGTTACCGCATTA+GGG - chr2_3:11684970-11684989 Msa0278630:intron 35.0%
ATTAGCGTCCTTTAATTGCA+AGG - chr2_3:11685134-11685153 Msa0278630:intron 35.0%
TTACTATAAAGCTCCTTCCA+TGG + chr2_3:11685208-11685227 None:intergenic 35.0%
!!! AGTAACAGGTTGCTGTTTTT+AGG - chr2_3:11685223-11685242 Msa0278630:intron 35.0%
!!! GTAACAGGTTGCTGTTTTTA+GGG - chr2_3:11685224-11685243 Msa0278630:intron 35.0%
GAAGAAGTCTTAACTGAGTA+AGG - chr2_3:11685366-11685385 Msa0278630:CDS 35.0%
! GAAGAAGTTCTTGATGCTTT+TGG - chr2_3:11685524-11685543 Msa0278630:CDS 35.0%
AGTCAACATGAAAATCTCTC+TGG + chr2_3:11685608-11685627 None:intergenic 35.0%
!! ATTTTTCAGCCATATGAAGG+TGG + chr2_3:11685703-11685722 None:intergenic 35.0%
TTCCAAAGGGAAAAATAGTC+TGG + chr2_3:11685949-11685968 None:intergenic 35.0%
AAGGTTCAAACGGAAACTTA+AGG - chr2_3:11686036-11686055 Msa0278630:five_prime_UTR 35.0%
AGGTTCAAACGGAAACTTAA+GGG - chr2_3:11686037-11686056 Msa0278630:five_prime_UTR 35.0%
!! CAAGAGACTTATTTCTAGGA+TGG - chr2_3:11686094-11686113 Msa0278630:five_prime_UTR 35.0%
! GCAATTACCTGTTTTCATCA+GGG + chr2_3:11686123-11686142 None:intergenic 35.0%
! TGCAATTACCTGTTTTCATC+AGG + chr2_3:11686124-11686143 None:intergenic 35.0%
ATAGTATCCTCTTATGGTCA+CGG - chr2_3:11686159-11686178 Msa0278630:five_prime_UTR 35.0%
TCTCTATAACGATGTGGATT+CGG - chr2_3:11686217-11686236 Msa0278630:five_prime_UTR 35.0%
! AAATCAATCAGAGCATCAGA+TGG + chr2_3:11686272-11686291 None:intergenic 35.0%
CTGTCTTCAATGTTCTTATG+TGG - chr2_3:11686361-11686380 Msa0278630:five_prime_UTR 35.0%
TCTTCAATGTTCTTATGTGG+TGG - chr2_3:11686364-11686383 Msa0278630:five_prime_UTR 35.0%
CTTCAATGTTCTTATGTGGT+GGG - chr2_3:11686365-11686384 Msa0278630:five_prime_UTR 35.0%
CAAGGTAAAACAAATCAGGT+AGG + chr2_3:11686461-11686480 None:intergenic 35.0%
GCTTAAAGATGATGTCAACA+AGG - chr2_3:11686530-11686549 Msa0278630:five_prime_UTR 35.0%
AATTGGACAACGAAAACGAA+GGG + chr2_3:11686789-11686808 None:intergenic 35.0%
AAATTGGACAACGAAAACGA+AGG + chr2_3:11686790-11686809 None:intergenic 35.0%
CTGAGACATTCAACATATCG+TGG + chr2_3:11681585-11681604 None:intergenic 40.0%
!! GTTTGATTATGCTGCTTTGG+TGG - chr2_3:11681931-11681950 Msa0278630:CDS 40.0%
! ACTTTTGAGCTGTGTACTCT+TGG - chr2_3:11682155-11682174 Msa0278630:intron 40.0%
TCATCTTCGCACTTGTCAAA+TGG - chr2_3:11682499-11682518 Msa0278630:intron 40.0%
AGGGCATATGTTGTGACTAA+TGG + chr2_3:11682527-11682546 None:intergenic 40.0%
AGTCACAACATATGCCCTAA+TGG - chr2_3:11682529-11682548 Msa0278630:intron 40.0%
AATTCCCTCCACAACGATAT+CGG + chr2_3:11682653-11682672 None:intergenic 40.0%
!! ATGCACCGATGAATTTTCAC+CGG + chr2_3:11682676-11682695 None:intergenic 40.0%
!! TTGAGCGATTTGTTGCCTTA+TGG - chr2_3:11682787-11682806 Msa0278630:CDS 40.0%
TTGTTGCCTTATGGCAAAGT+TGG - chr2_3:11682796-11682815 Msa0278630:CDS 40.0%
TGGAAAAGTGATACCAACTC+TGG + chr2_3:11682988-11683007 None:intergenic 40.0%
!!! AGAGTTGGTATCACTTTTCC+AGG - chr2_3:11682987-11683006 Msa0278630:intron 40.0%
TACGGAACACGTATTGTATC+CGG - chr2_3:11683087-11683106 Msa0278630:intron 40.0%
ATGACAGTTGCGTCTTTAGT+TGG - chr2_3:11683118-11683137 Msa0278630:intron 40.0%
ATGATTCAGAACATGGGAAG+AGG - chr2_3:11683454-11683473 Msa0278630:intron 40.0%
TCTCAATTGAGATCTGGTCA+AGG + chr2_3:11683913-11683932 None:intergenic 40.0%
GCTCTTTCTCAATTGAGATC+TGG + chr2_3:11683919-11683938 None:intergenic 40.0%
!! ACTTTTTCTGAGAGCTCATG+GGG + chr2_3:11683944-11683963 None:intergenic 40.0%
! CGTTTTCATCATCCTGATGA+AGG + chr2_3:11683985-11684004 None:intergenic 40.0%
CACTAGAATTCACAAGGCAT+TGG - chr2_3:11684042-11684061 Msa0278630:CDS 40.0%
! TGAAGTTCTTGGATTGGGTT+TGG - chr2_3:11684177-11684196 Msa0278630:CDS 40.0%
TCAATCTTCGGAATTCTCGA+GGG - chr2_3:11684206-11684225 Msa0278630:CDS 40.0%
AGTATCGCTTCTTACGAAAG+GGG - chr2_3:11684276-11684295 Msa0278630:CDS 40.0%
! GTGCTGTTAGTATTTGTAGG+AGG - chr2_3:11684332-11684351 Msa0278630:CDS 40.0%
AGAAATGCGAAGGAATCCTT+TGG - chr2_3:11684441-11684460 Msa0278630:CDS 40.0%
CAAGGTACAAAAGCTTCATG+TGG + chr2_3:11684510-11684529 None:intergenic 40.0%
! CTTTTGTACCTTGAGAACAG+AGG - chr2_3:11684517-11684536 Msa0278630:CDS 40.0%
TTCGTTTCCATGCCTTTGAA+TGG - chr2_3:11684618-11684637 Msa0278630:intron 40.0%
AAACTCCAAAATGGGAAGCA+AGG + chr2_3:11684727-11684746 None:intergenic 40.0%
!! TTTTAAGTGGTTCTTCCGAG+TGG + chr2_3:11684768-11684787 None:intergenic 40.0%
TCTTTAACTCCTTGTGCAAC+TGG - chr2_3:11684808-11684827 Msa0278630:intron 40.0%
!! TAGTTCTGGAAATGTAAGGC+TGG - chr2_3:11684930-11684949 Msa0278630:intron 40.0%
GGAAATGTAAGGCTGGAATT+TGG - chr2_3:11684937-11684956 Msa0278630:intron 40.0%
GATTCACAAGTTACCGCATT+AGG - chr2_3:11684969-11684988 Msa0278630:intron 40.0%
TAGAACTCTACACCCTAATG+CGG + chr2_3:11684985-11685004 None:intergenic 40.0%
TAATTCCCTTGCGAGTGATT+AGG - chr2_3:11685067-11685086 Msa0278630:intron 40.0%
CAAATCCTAATCACTCGCAA+GGG + chr2_3:11685075-11685094 None:intergenic 40.0%
!! TTTGCTGTTGCATTACGAAG+AGG - chr2_3:11685091-11685110 Msa0278630:intron 40.0%
! GGAAGGAGCTTTATAGTAAC+AGG - chr2_3:11685209-11685228 Msa0278630:intron 40.0%
!!! TTTTTAGGGTTCTTGCTCCT+TGG - chr2_3:11685238-11685257 Msa0278630:intron 40.0%
TAAGGTGAATCCAATGACCA+AGG + chr2_3:11685258-11685277 None:intergenic 40.0%
TTGGTCATTGGATTCACCTT+AGG - chr2_3:11685257-11685276 Msa0278630:intron 40.0%
CCTTAATCAGTGAAGACAGA+TGG + chr2_3:11685409-11685428 None:intergenic 40.0%
! CCATCTGTCTTCACTGATTA+AGG - chr2_3:11685406-11685425 Msa0278630:CDS 40.0%
AGCACTCAGTGAAAAGGATT+AGG - chr2_3:11685439-11685458 Msa0278630:CDS 40.0%
AGGAGCAACTGATCTTATAG+AGG - chr2_3:11685502-11685521 Msa0278630:CDS 40.0%
AAACAAGGCAAAATCGATGC+TGG + chr2_3:11685569-11685588 None:intergenic 40.0%
!! TGCCAGACTATTTTTCCCTT+TGG - chr2_3:11685944-11685963 Msa0278630:five_prime_UTR 40.0%
! TGGCTAATTTGGCTTCCAAA+GGG + chr2_3:11685962-11685981 None:intergenic 40.0%
! ATGGCTAATTTGGCTTCCAA+AGG + chr2_3:11685963-11685982 None:intergenic 40.0%
TTTGGAAGCCAAATTAGCCA+TGG - chr2_3:11685962-11685981 Msa0278630:five_prime_UTR 40.0%
TGCAATGTCCATGGCTAATT+TGG + chr2_3:11685973-11685992 None:intergenic 40.0%
TCGGCATCAAAAGGTTCAAA+CGG - chr2_3:11686026-11686045 Msa0278630:five_prime_UTR 40.0%
TTCAAACGGAAACTTAAGGG+AGG - chr2_3:11686040-11686059 Msa0278630:five_prime_UTR 40.0%
!! GAGACTTATTTCTAGGATGG+AGG - chr2_3:11686097-11686116 Msa0278630:five_prime_UTR 40.0%
GTGACTTCTCTATAACGATG+TGG - chr2_3:11686211-11686230 Msa0278630:five_prime_UTR 40.0%
! ATGTGGATTCGGTTAACTCT+GGG - chr2_3:11686228-11686247 Msa0278630:five_prime_UTR 40.0%
CGGTTAACTCTGGGTTTATA+CGG - chr2_3:11686237-11686256 Msa0278630:five_prime_UTR 40.0%
CTTGACTCTTTGCTCTTCTT+GGG + chr2_3:11686493-11686512 None:intergenic 40.0%
TCTTGACTCTTTGCTCTTCT+TGG + chr2_3:11686494-11686513 None:intergenic 40.0%
AAGAAGAGCAAAGAGTCAAG+AGG - chr2_3:11686493-11686512 Msa0278630:five_prime_UTR 40.0%
AACCCAGACAGAGAGAATCA+CGG + chr2_3:11681743-11681762 None:intergenic 45.0%
ATCATGTGTTATGTGCCGTG+AGG - chr2_3:11682201-11682220 Msa0278630:intron 45.0%
ATGGTAGCTGCAAAACCTCA+CGG + chr2_3:11682219-11682238 None:intergenic 45.0%
TATCGTTGTGGAGGGAATTC+CGG - chr2_3:11682654-11682673 Msa0278630:intron 45.0%
ATCGGTGCATTCTAGGTTCT+AGG - chr2_3:11682686-11682705 Msa0278630:intron 45.0%
ACTTAAACCCTCTCCAATGG+AGG - chr2_3:11682864-11682883 Msa0278630:intron 45.0%
ACACATGTAGACACCTCCAT+TGG + chr2_3:11682880-11682899 None:intergenic 45.0%
GTTTGTGCTCATGATGCTTG+CGG - chr2_3:11682907-11682926 Msa0278630:intron 45.0%
ACGGAACACGTATTGTATCC+GGG - chr2_3:11683088-11683107 Msa0278630:intron 45.0%
TAAAGACGCAACTGTCATCC+GGG + chr2_3:11683116-11683135 None:intergenic 45.0%
CTAAAGACGCAACTGTCATC+CGG + chr2_3:11683117-11683136 None:intergenic 45.0%
! AGTATCCGATATGTGTCGGT+CGG - chr2_3:11683258-11683277 Msa0278630:intron 45.0%
GACAATGGAAAGCAACCATG+AGG + chr2_3:11683841-11683860 None:intergenic 45.0%
TGCCACTCTGTCAACACATT+GGG + chr2_3:11683882-11683901 None:intergenic 45.0%
TGAAAACGATGCTCCTGTAG+TGG - chr2_3:11683997-11684016 Msa0278630:CDS 45.0%
AACAACCTTAGGGTCACAGT+GGG + chr2_3:11684155-11684174 None:intergenic 45.0%
AAACAACCTTAGGGTCACAG+TGG + chr2_3:11684156-11684175 None:intergenic 45.0%
GTCAATCTTCGGAATTCTCG+AGG - chr2_3:11684205-11684224 Msa0278630:CDS 45.0%
AATTGAAGGCTCCTTACGCA+TGG + chr2_3:11684254-11684273 None:intergenic 45.0%
! GCATCGGATTTGACTTTCGA+TGG - chr2_3:11684304-11684323 Msa0278630:CDS 45.0%
GTATTTGTAGGAGGTTGACG+AGG - chr2_3:11684341-11684360 Msa0278630:CDS 45.0%
GTACCTTGAGAACAGAGGTA+TGG - chr2_3:11684522-11684541 Msa0278630:CDS 45.0%
TCACCATACCTCTGTTCTCA+AGG + chr2_3:11684528-11684547 None:intergenic 45.0%
TTGTTGTGGATCAAGCTTCG+AGG - chr2_3:11684584-11684603 Msa0278630:intron 45.0%
! GTGATCCTTGCTTCCCATTT+TGG - chr2_3:11684719-11684738 Msa0278630:intron 45.0%
GTAAGGCTGGAATTTGGAAG+TGG - chr2_3:11684943-11684962 Msa0278630:intron 45.0%
AGGAATTCAGGCGCAAACAA+AGG - chr2_3:11685022-11685041 Msa0278630:intron 45.0%
GGAATTCAGGCGCAAACAAA+GGG - chr2_3:11685023-11685042 Msa0278630:intron 45.0%
! AAGGGCCAATTTTCTGCTGA+AGG - chr2_3:11685041-11685060 Msa0278630:intron 45.0%
GCAAATCCTAATCACTCGCA+AGG + chr2_3:11685076-11685095 None:intergenic 45.0%
! GAGGTCACACGTTTGAGTTA+TGG - chr2_3:11685110-11685129 Msa0278630:intron 45.0%
TTCCATGGTACATGACGAAG+AGG + chr2_3:11685193-11685212 None:intergenic 45.0%
TCTTCGTCATGTACCATGGA+AGG - chr2_3:11685192-11685211 Msa0278630:intron 45.0%
CTTAGAGCATGAAAGGGAGA+AGG - chr2_3:11685344-11685363 Msa0278630:intron 45.0%
TGAGTGAGCACTCAGTGAAA+AGG - chr2_3:11685433-11685452 Msa0278630:CDS 45.0%
AGCTGGAGCAAGAACAAGTA+TGG + chr2_3:11685474-11685493 None:intergenic 45.0%
!!! CAGGCCTGTTTTGTTTATGC+TGG - chr2_3:11685785-11685804 Msa0278630:CDS 45.0%
!! ATCCGAGTTTGCTGGTCTTT+CGG - chr2_3:11686007-11686026 Msa0278630:five_prime_UTR 45.0%
! GATGTGGATTCGGTTAACTC+TGG - chr2_3:11686227-11686246 Msa0278630:five_prime_UTR 45.0%
! GCGCTACTTTCCTAATTGCT+CGG - chr2_3:11686407-11686426 Msa0278630:five_prime_UTR 45.0%
AAAGCTGAGTTTAGTCGCTC+TGG - chr2_3:11686567-11686586 Msa0278630:five_prime_UTR 45.0%
AAGCTGAGTTTAGTCGCTCT+GGG - chr2_3:11686568-11686587 Msa0278630:five_prime_UTR 45.0%
! AGACTCTCTAAGGGATGAAG+AGG + chr2_3:11686610-11686629 None:intergenic 45.0%
GACAACGAAAACGAAGGGAT+AGG + chr2_3:11686784-11686803 None:intergenic 45.0%
!!! TATTTTTTTTAAATTAAAAC+TGG + chr2_3:11685648-11685667 None:intergenic 5.0%
ACCCGTGATTCTCTCTGTCT+GGG - chr2_3:11681738-11681757 Msa0278630:CDS 50.0%
ACCCAGACAGAGAGAATCAC+GGG + chr2_3:11681742-11681761 None:intergenic 50.0%
!! TTATGCTGCTTTGGTGGCTC+TGG - chr2_3:11681937-11681956 Msa0278630:CDS 50.0%
GAGCATGATCGGAGCCATTA+GGG + chr2_3:11682546-11682565 None:intergenic 50.0%
CTCGAGGTTACGAGCATGAT+CGG + chr2_3:11682557-11682576 None:intergenic 50.0%
! TGGTGATGCCGATATCGTTG+TGG - chr2_3:11682642-11682661 Msa0278630:intron 50.0%
TGATGCCGATATCGTTGTGG+AGG - chr2_3:11682645-11682664 Msa0278630:intron 50.0%
GATGCCGATATCGTTGTGGA+GGG - chr2_3:11682646-11682665 Msa0278630:intron 50.0%
GTAGACACCTCCATTGGAGA+GGG + chr2_3:11682874-11682893 None:intergenic 50.0%
TGTAGACACCTCCATTGGAG+AGG + chr2_3:11682875-11682894 None:intergenic 50.0%
ACGTATTGTATCCGGGATCC+CGG - chr2_3:11683095-11683114 Msa0278630:intron 50.0%
CTTTGTAGGGAAGGCTCTTG+TGG - chr2_3:11683799-11683818 Msa0278630:intron 50.0%
! TGCCCAATGTGTTGACAGAG+TGG - chr2_3:11683877-11683896 Msa0278630:CDS 50.0%
! GTGCCACTCTGTCAACACAT+TGG + chr2_3:11683883-11683902 None:intergenic 50.0%
TGTTGACAGAGTGGCACGAT+CGG - chr2_3:11683886-11683905 Msa0278630:CDS 50.0%
CATCATCCTGATGAAGGTCG+CGG + chr2_3:11683979-11683998 None:intergenic 50.0%
! AGGGACAAAGTGTCCACTAC+AGG + chr2_3:11684013-11684032 None:intergenic 50.0%
TCACATTGCTGCCATGCGTA+AGG - chr2_3:11684240-11684259 Msa0278630:CDS 50.0%
TACGAAAGGGGCTTGTGCAT+CGG - chr2_3:11684288-11684307 Msa0278630:CDS 50.0%
ACAGAGGGATCTGTAGCCAA+AGG + chr2_3:11684460-11684479 None:intergenic 50.0%
ACTGTGTGGGAAGACACAGA+GGG + chr2_3:11684475-11684494 None:intergenic 50.0%
GAGATCATCAGCCACTGTGT+GGG + chr2_3:11684488-11684507 None:intergenic 50.0%
ATCCAATGGTCAGCTTTCCG+AGG + chr2_3:11684835-11684854 None:intergenic 50.0%
GGCTGGAATTTGGAAGTGGT+TGG - chr2_3:11684947-11684966 Msa0278630:intron 50.0%
GTACATGACGAAGAGGTCAC+AGG + chr2_3:11685186-11685205 None:intergenic 50.0%
GACCTCTTCGTCATGTACCA+TGG - chr2_3:11685188-11685207 Msa0278630:intron 50.0%
GGTTCTTGCTCCTTGGTCAT+TGG - chr2_3:11685245-11685264 Msa0278630:intron 50.0%
CTTGCTCCAGCTCTCAGATT+AGG - chr2_3:11685482-11685501 Msa0278630:CDS 50.0%
GTTGCTCCTAATCTGAGAGC+TGG + chr2_3:11685491-11685510 None:intergenic 50.0%
GAGACAACATCCGAGTTTGC+TGG - chr2_3:11685999-11686018 Msa0278630:five_prime_UTR 50.0%
TGCCGAAAGACCAGCAAACT+CGG + chr2_3:11686012-11686031 None:intergenic 50.0%
!! GCTGGTCTTTCGGCATCAAA+AGG - chr2_3:11686017-11686036 Msa0278630:five_prime_UTR 50.0%
ATGGAGGCCCTGATGAAAAC+AGG - chr2_3:11686113-11686132 Msa0278630:five_prime_UTR 50.0%
TCGAGCACTTCCGAGCAATT+AGG + chr2_3:11686420-11686439 None:intergenic 50.0%
!! GGAAGTGCTCGACAAGTTCA+TGG - chr2_3:11686428-11686447 Msa0278630:five_prime_UTR 50.0%
AGTGCTCGACAAGTTCATGG+AGG - chr2_3:11686431-11686450 Msa0278630:five_prime_UTR 50.0%
GACCCGTGATTCTCTCTGTC+TGG - chr2_3:11681737-11681756 Msa0278630:CDS 55.0%
CGAGCATGATCGGAGCCATT+AGG + chr2_3:11682547-11682566 None:intergenic 55.0%
CGATCATGCTCGTAACCTCG+AGG - chr2_3:11682555-11682574 Msa0278630:intron 55.0%
!! GAGCACCGACCGACACATAT+CGG + chr2_3:11683266-11683285 None:intergenic 55.0%
!! CACAGTGGGCTACTGCATAG+TGG + chr2_3:11684141-11684160 None:intergenic 55.0%
AGTAGCCCACTGTGACCCTA+AGG - chr2_3:11684147-11684166 Msa0278630:CDS 55.0%
TAGGAGGTTGACGAGGCCAA+AGG - chr2_3:11684348-11684367 Msa0278630:CDS 55.0%
CACTGTGTGGGAAGACACAG+AGG + chr2_3:11684476-11684495 None:intergenic 55.0%
CTCTGTGTCTTCCCACACAG+TGG - chr2_3:11684474-11684493 Msa0278630:CDS 55.0%
GGAGATCATCAGCCACTGTG+TGG + chr2_3:11684489-11684508 None:intergenic 55.0%
CTCCTTGTGCAACTGGACCT+CGG - chr2_3:11684815-11684834 Msa0278630:intron 55.0%
TTCCGAGGTCCAGTTGCACA+AGG + chr2_3:11684820-11684839 None:intergenic 55.0%
GACCTCGGAAAGCTGACCAT+TGG - chr2_3:11684830-11684849 Msa0278630:intron 55.0%
GCGCTGAGACCACCTTCATA+TGG - chr2_3:11685691-11685710 Msa0278630:CDS 55.0%
AGCATTGCTGTCTGCTGCAG+TGG - chr2_3:11685917-11685936 Msa0278630:five_prime_UTR 55.0%
CTCTGCACGTGCAATGTCCA+TGG + chr2_3:11685982-11686001 None:intergenic 55.0%
GAAGTCGCCGTGACCATAAG+AGG + chr2_3:11686169-11686188 None:intergenic 55.0%
ATGGTCACGGCGACTTCCAA+TGG - chr2_3:11686172-11686191 Msa0278630:five_prime_UTR 55.0%
GGCGACTTCCAATGGAATCG+CGG - chr2_3:11686180-11686199 Msa0278630:five_prime_UTR 55.0%
GCGACTTCCAATGGAATCGC+GGG - chr2_3:11686181-11686200 Msa0278630:five_prime_UTR 55.0%
CGACTTCCAATGGAATCGCG+GGG - chr2_3:11686182-11686201 Msa0278630:five_prime_UTR 55.0%
! TGGTGGGTGTCAGTCGAGAT+GGG - chr2_3:11686381-11686400 Msa0278630:five_prime_UTR 55.0%
CTTCTTGGGTGCCCTTCTCA+AGG + chr2_3:11686479-11686498 None:intergenic 55.0%
GCAACTGTCATCCGGGATCC+CGG + chr2_3:11683109-11683128 None:intergenic 60.0%
CATCCTGATGAAGGTCGCGG+CGG + chr2_3:11683976-11683995 None:intergenic 60.0%
!! GTGGTGGGTGTCAGTCGAGA+TGG - chr2_3:11686380-11686399 Msa0278630:five_prime_UTR 60.0%
GGTGGGTGTCAGTCGAGATG+GGG - chr2_3:11686382-11686401 Msa0278630:five_prime_UTR 60.0%
CTGCTGCCCCGCGATTCCAT+TGG + chr2_3:11686191-11686210 None:intergenic 65.0%
CAATGGAATCGCGGGGCAGC+AGG - chr2_3:11686189-11686208 Msa0278630:five_prime_UTR 65.0%
GGGTGTCAGTCGAGATGGGG+CGG - chr2_3:11686385-11686404 Msa0278630:five_prime_UTR 65.0%
GCTCCGCCGCGACCTTCATC+AGG - chr2_3:11683970-11683989 Msa0278630:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 11681519 11686839 11681519 ID=Msa0278630;Name=Msa0278630
chr2_3 mRNA 11681519 11686839 11681519 ID=Msa0278630-mRNA-1;Parent=Msa0278630;Name=Msa0278630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=941|0.5|0.8|0.8|1|1|5|183|618
chr2_3 exon 11681519 11681964 11681519 ID=Msa0278630-mRNA-1:exon:5263;Parent=Msa0278630-mRNA-1
chr2_3 exon 11682224 11682421 11682224 ID=Msa0278630-mRNA-1:exon:5262;Parent=Msa0278630-mRNA-1
chr2_3 exon 11682774 11682866 11682774 ID=Msa0278630-mRNA-1:exon:5261;Parent=Msa0278630-mRNA-1
chr2_3 exon 11683820 11684573 11683820 ID=Msa0278630-mRNA-1:exon:5260;Parent=Msa0278630-mRNA-1
chr2_3 exon 11685350 11686839 11685350 ID=Msa0278630-mRNA-1:exon:5259;Parent=Msa0278630-mRNA-1
chr2_3 five_prime_UTR 11685899 11686839 11685899 ID=Msa0278630-mRNA-1:five_prime_utr;Parent=Msa0278630-mRNA-1
chr2_3 CDS 11685350 11685898 11685350 ID=Msa0278630-mRNA-1:cds;Parent=Msa0278630-mRNA-1
chr2_3 CDS 11683820 11684573 11683820 ID=Msa0278630-mRNA-1:cds;Parent=Msa0278630-mRNA-1
chr2_3 CDS 11682774 11682866 11682774 ID=Msa0278630-mRNA-1:cds;Parent=Msa0278630-mRNA-1
chr2_3 CDS 11682224 11682421 11682224 ID=Msa0278630-mRNA-1:cds;Parent=Msa0278630-mRNA-1
chr2_3 CDS 11681702 11681964 11681702 ID=Msa0278630-mRNA-1:cds;Parent=Msa0278630-mRNA-1
chr2_3 three_prime_UTR 11681519 11681701 11681519 ID=Msa0278630-mRNA-1:three_prime_utr;Parent=Msa0278630-mRNA-1
Gene Sequence

>Msa0278630

ATGGCTAATTCGGCTGAACCCTCTTTGAGCAATAATACATCATCTTCGCACTTGTCAAATGGATCCATTAGTCACAACATATGCCCTAATGGCTCCGATCATGCTCGTAACCTCGAGGTTATAAGTTTGAACAAGCTGAGTTCTAATTTGGAGCAGCTTTTGATTGATTCTGATTATGATTATGGTGATGCCGATATCGTTGTGGAGGGAATTCCGGTGAAAATTCATCGGTGCATTCTAGGTTCTAGGAGTAAGTTTTTCCATGAAATATTTAAGAGGGGTAAAGATAAAGGATTGTCGAAGAATGAAGGGAAATTGAAGTATTGTTTGAGCGATTTGTTGCCTTATGGCAAAGTTGGTTATGAAGCTTTTCTTATATTCTTGAGCTATGCATATAGTGGTAAACTTAAACCCTCTCCAATGGAGGTGTCTACATGTGTTGATAATGTTTGTGCTCATGATGCTTGCGGACCTGCAATTAATTTTGCTGTGGAGTTAATGTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTATCACTTTTCCAGAGACGTCTTCTTAACTTTGTAGGGAAGGCTCTTGTGGAAGATGTCATTTCAATCCTCATGGTTGCTTTCCATTGTCAATTGAATCAACTCGTTGCCCAATGTGTTGACAGAGTGGCACGATCGGACCTTGACCAGATCTCAATTGAGAAAGAGCTTCCCCATGAGCTCTCAGAAAAAGTTAAATTGCTCCGCCGCGACCTTCATCAGGATGATGAAAACGATGCTCCTGTAGTGGACACTTTGTCCCTAAAACGAATCACTAGAATTCACAAGGCATTGGACTCAGACGACGTCGAGCTTGTTAAACTTCTTTTAAACGAGTCAGACATTACTTTAGATGAAGCTGGTGCTCTCCACTATGCAGTAGCCCACTGTGACCCTAAGGTTGTTTCTGAAGTTCTTGGATTGGGTTTGGCTAATGTCAATCTTCGGAATTCTCGAGGGTATACAGTGCTTCACATTGCTGCCATGCGTAAGGAGCCTTCAATTATAGTATCGCTTCTTACGAAAGGGGCTTGTGCATCGGATTTGACTTTCGATGGTCAGAGTGCTGTTAGTATTTGTAGGAGGTTGACGAGGCCAAAGGATTATCACACAAAAACAGAACAGGGGAAAGAAACAAATAAAGACCGGATATGCATTGATGTTCTTGAAAGAGAAATGCGAAGGAATCCTTTGGCTACAGATCCCTCTGTGTCTTCCCACACAGTGGCTGATGATCTCCACATGAAGCTTTTGTACCTTGAGAACAGAGCTCTCAGATTAGGAGCAACTGATCTTATAGAGGAAGAAGTTCTTGATGCTTTTGGACGTCTTTCACAAACGCTACCAGCATCGATTTTGCCTTTGGCATTTGCCAGACTATTTTTCCCTTTGGAAGCCAAATTAGCCATGGACATTGCACGTGCAGAGACAACATCCGAGTTTGCTGGTCTTTCGGCATCAAAAGGTTCAAACGGAAACTTAAGGGAGGTTGATCTCAATGAAACTCCCATAATGCAAAACAAGAGACTTATTTCTAGGATGGAGGCCCTGATGAAAACAGTCGAGATGGGGCGGCGCTACTTTCCTAATTGCTCGGAAGTGCTCGACAAGTTCATGGAGGATGACCTACCTGATTTGTTTTACCTTGAGAAGGGCACCCAAGAAGAGCAAAGAGTCAAGAGGACGAGATTCGTTGAGCTTAAAGATGATGTCAACAAGGCTTTCAGCAAAGACAAAGCTGAGTTTAGTCGCTCTGGGATTTCATCTTCATCATCCTCTTCATCCCTTAGAGAGTCTGTATATTACAAGGCTAGAAAAATGTGA
Protein sequence

>Msa0278630

MANSAEPSLSNNTSSSHLSNGSISHNICPNGSDHARNLEVISLNKLSSNLEQLLIDSDYDYGDADIVVEGIPVKIHRCILGSRSKFFHEIFKRGKDKGLSKNEGKLKYCLSDLLPYGKVGYEAFLIFLSYAYSGKLKPSPMEVSTCVDNVCAHDACGPAINFAVELMYASSIFQIPELVSLFQRRLLNFVGKALVEDVISILMVAFHCQLNQLVAQCVDRVARSDLDQISIEKELPHELSEKVKLLRRDLHQDDENDAPVVDTLSLKRITRIHKALDSDDVELVKLLLNESDITLDEAGALHYAVAHCDPKVVSEVLGLGLANVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHTKTEQGKETNKDRICIDVLEREMRRNPLATDPSVSSHTVADDLHMKLLYLENRALRLGATDLIEEEVLDAFGRLSQTLPASILPLAFARLFFPLEAKLAMDIARAETTSEFAGLSASKGSNGNLREVDLNETPIMQNKRLISRMEALMKTVEMGRRYFPNCSEVLDKFMEDDLPDLFYLEKGTQEEQRVKRTRFVELKDDVNKAFSKDKAEFSRSGISSSSSSSSLRESVYYKARKM*