Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094090 | XP_013467373.2 | 85.185 | 81 | 12 | 0 | 35 | 115 | 484 | 564 | 2.35e-37 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094090 | A0A072VTJ7 | 85.185 | 81 | 12 | 0 | 35 | 115 | 467 | 547 | 1.13e-37 | 143 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1094090 | 0.804905 | 1.725506e-49 | -8.615850e-47 |
| Msa0810220 | Msa1094090 | 0.803284 | 3.751080e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094090 | MtrunA17_Chr1g0171251 | 87.342 | 79 | 10 | 0 | 37 | 115 | 444 | 522 | 2.99e-41 | 142 |
| Msa1094090 | MtrunA17_Chr6g0457631 | 76.471 | 85 | 17 | 1 | 34 | 115 | 329 | 413 | 4.10e-37 | 130 |
| Msa1094090 | MtrunA17_Chr6g0456471 | 76.623 | 77 | 18 | 0 | 35 | 111 | 105 | 181 | 7.36e-35 | 119 |
| Msa1094090 | MtrunA17_Chr6g0460071 | 72.093 | 86 | 21 | 1 | 33 | 115 | 328 | 413 | 3.81e-34 | 122 |
| Msa1094090 | MtrunA17_Chr6g0467001 | 75.641 | 78 | 19 | 0 | 34 | 111 | 324 | 401 | 3.19e-33 | 120 |
| Msa1094090 | MtrunA17_Chr5g0420061 | 68.293 | 82 | 26 | 0 | 34 | 115 | 342 | 423 | 4.15e-33 | 119 |
| Msa1094090 | MtrunA17_Chr6g0456461 | 73.077 | 78 | 21 | 0 | 34 | 111 | 252 | 329 | 1.10e-32 | 117 |
| Msa1094090 | MtrunA17_Chr3g0091181 | 72.500 | 80 | 22 | 0 | 34 | 113 | 521 | 600 | 1.46e-32 | 119 |
| Msa1094090 | MtrunA17_Chr7g0231101 | 70.130 | 77 | 23 | 0 | 34 | 110 | 61 | 137 | 1.54e-32 | 111 |
| Msa1094090 | MtrunA17_Chr4g0076081 | 73.077 | 78 | 21 | 0 | 34 | 111 | 467 | 544 | 4.97e-32 | 118 |
| Msa1094090 | MtrunA17_Chr6g0456481 | 70.000 | 80 | 24 | 0 | 34 | 113 | 238 | 317 | 5.88e-32 | 114 |
| Msa1094090 | MtrunA17_Chr3g0140831 | 70.886 | 79 | 23 | 0 | 34 | 112 | 466 | 544 | 6.41e-32 | 117 |
| Msa1094090 | MtrunA17_Chr6g0456721 | 54.867 | 113 | 36 | 2 | 17 | 114 | 294 | 406 | 2.82e-31 | 114 |
| Msa1094090 | MtrunA17_Chr6g0458941 | 73.077 | 78 | 21 | 0 | 34 | 111 | 376 | 453 | 4.38e-31 | 114 |
| Msa1094090 | MtrunA17_Chr2g0278211 | 71.795 | 78 | 22 | 0 | 34 | 111 | 280 | 357 | 6.37e-31 | 113 |
| Msa1094090 | MtrunA17_Chr5g0446541 | 71.084 | 83 | 20 | 2 | 35 | 114 | 481 | 562 | 2.07e-30 | 114 |
| Msa1094090 | MtrunA17_Chr3g0140011 | 67.949 | 78 | 25 | 0 | 34 | 111 | 286 | 363 | 2.17e-30 | 112 |
| Msa1094090 | MtrunA17_Chr6g0470681 | 69.231 | 78 | 24 | 0 | 34 | 111 | 259 | 336 | 2.64e-30 | 111 |
| Msa1094090 | MtrunA17_Chr5g0432971 | 68.675 | 83 | 22 | 2 | 35 | 114 | 464 | 545 | 3.23e-30 | 113 |
| Msa1094090 | MtrunA17_Chr8g0366771 | 70.130 | 77 | 22 | 1 | 35 | 111 | 102 | 177 | 4.22e-30 | 107 |
| Msa1094090 | MtrunA17_Chr6g0456711 | 67.949 | 78 | 25 | 0 | 34 | 111 | 480 | 557 | 6.26e-30 | 112 |
| Msa1094090 | MtrunA17_Chr6g0466991 | 72.222 | 72 | 20 | 0 | 40 | 111 | 6 | 77 | 1.46e-29 | 102 |
| Msa1094090 | MtrunA17_Chr6g0456511 | 67.949 | 78 | 25 | 0 | 34 | 111 | 172 | 249 | 1.56e-29 | 107 |
| Msa1094090 | MtrunA17_Chr7g0225811 | 70.000 | 80 | 24 | 0 | 34 | 113 | 519 | 598 | 6.31e-29 | 109 |
| Msa1094090 | MtrunA17_Chr4g0001021 | 68.831 | 77 | 24 | 0 | 35 | 111 | 34 | 110 | 2.59e-28 | 101 |
| Msa1094090 | MtrunA17_Chr6g0456501 | 65.385 | 78 | 27 | 0 | 34 | 111 | 328 | 405 | 2.98e-28 | 106 |
| Msa1094090 | MtrunA17_Chr3g0140021 | 69.737 | 76 | 23 | 0 | 35 | 110 | 166 | 241 | 6.68e-28 | 103 |
| Msa1094090 | MtrunA17_Chr7g0231981 | 66.667 | 78 | 26 | 0 | 34 | 111 | 301 | 378 | 9.00e-28 | 105 |
| Msa1094090 | MtrunA17_Chr2g0333791 | 68.831 | 77 | 24 | 0 | 35 | 111 | 45 | 121 | 1.12e-27 | 100 |
| Msa1094090 | MtrunA17_Chr4g0000971 | 66.667 | 78 | 26 | 0 | 34 | 111 | 325 | 402 | 9.59e-27 | 102 |
| Msa1094090 | MtrunA17_Chr4g0009861 | 62.821 | 78 | 29 | 0 | 34 | 111 | 209 | 286 | 2.13e-26 | 100 |
| Msa1094090 | MtrunA17_Chr4g0000931 | 67.532 | 77 | 25 | 0 | 35 | 111 | 211 | 287 | 5.80e-26 | 99.4 |
| Msa1094090 | MtrunA17_Chr5g0440851 | 45.238 | 126 | 54 | 3 | 1 | 111 | 19 | 144 | 6.24e-26 | 96.3 |
| Msa1094090 | MtrunA17_Chr1g0212621 | 60.256 | 78 | 31 | 0 | 34 | 111 | 200 | 277 | 8.51e-26 | 98.6 |
| Msa1094090 | MtrunA17_Chr4g0002521 | 66.250 | 80 | 25 | 2 | 34 | 111 | 42 | 121 | 1.53e-25 | 94.7 |
| Msa1094090 | MtrunA17_Chr5g0446521 | 70.000 | 70 | 21 | 0 | 35 | 104 | 61 | 130 | 2.83e-25 | 93.2 |
| Msa1094090 | MtrunA17_Chr4g0011101 | 61.538 | 78 | 30 | 0 | 34 | 111 | 347 | 424 | 5.82e-25 | 97.8 |
| Msa1094090 | MtrunA17_Chr4g0002461 | 59.524 | 84 | 30 | 2 | 34 | 114 | 179 | 261 | 7.54e-25 | 95.9 |
| Msa1094090 | MtrunA17_Chr3g0077831 | 58.427 | 89 | 34 | 1 | 29 | 114 | 467 | 555 | 1.03e-24 | 97.8 |
| Msa1094090 | MtrunA17_Chr8g0372041 | 61.176 | 85 | 30 | 1 | 33 | 114 | 314 | 398 | 1.11e-24 | 97.1 |
| Msa1094090 | MtrunA17_Chr4g0000911 | 65.385 | 78 | 27 | 0 | 34 | 111 | 448 | 525 | 1.15e-24 | 97.4 |
| Msa1094090 | MtrunA17_Chr5g0411311 | 56.098 | 82 | 36 | 0 | 30 | 111 | 454 | 535 | 3.15e-24 | 96.3 |
| Msa1094090 | MtrunA17_Chr6g0456741 | 59.494 | 79 | 32 | 0 | 33 | 111 | 308 | 386 | 3.76e-24 | 95.5 |
| Msa1094090 | MtrunA17_Chr4g0017381 | 64.557 | 79 | 28 | 0 | 33 | 111 | 194 | 272 | 8.47e-24 | 93.2 |
| Msa1094090 | MtrunA17_Chr4g0000961 | 61.446 | 83 | 29 | 1 | 35 | 114 | 218 | 300 | 9.34e-24 | 93.2 |
| Msa1094090 | MtrunA17_Chr8g0355571 | 51.402 | 107 | 46 | 2 | 14 | 114 | 345 | 451 | 2.24e-23 | 93.6 |
| Msa1094090 | MtrunA17_Chr4g0008501 | 60.256 | 78 | 31 | 0 | 34 | 111 | 487 | 564 | 3.26e-23 | 93.6 |
| Msa1094090 | MtrunA17_Chr4g0009971 | 58.974 | 78 | 32 | 0 | 34 | 111 | 336 | 413 | 5.74e-23 | 92.4 |
| Msa1094090 | MtrunA17_Chr1g0158901 | 58.333 | 84 | 31 | 2 | 34 | 114 | 71 | 153 | 1.42e-22 | 87.0 |
| Msa1094090 | MtrunA17_Chr4g0017371 | 48.315 | 89 | 43 | 1 | 29 | 114 | 34 | 122 | 2.43e-22 | 85.9 |
| Msa1094090 | MtrunA17_Chr6g0481461 | 61.250 | 80 | 28 | 1 | 35 | 111 | 178 | 257 | 3.25e-22 | 88.6 |
| Msa1094090 | MtrunA17_Chr4g0075381 | 68.657 | 67 | 17 | 2 | 51 | 114 | 1 | 66 | 7.11e-22 | 83.6 |
| Msa1094090 | MtrunA17_Chr4g0002451 | 55.128 | 78 | 34 | 1 | 34 | 111 | 173 | 249 | 3.41e-21 | 85.9 |
| Msa1094090 | MtrunA17_Chr4g0002421 | 59.494 | 79 | 32 | 0 | 33 | 111 | 197 | 275 | 7.12e-21 | 85.5 |
| Msa1094090 | MtrunA17_Chr3g0115841 | 55.128 | 78 | 35 | 0 | 34 | 111 | 250 | 327 | 9.61e-21 | 85.5 |
| Msa1094090 | MtrunA17_Chr8g0342371 | 56.410 | 78 | 33 | 1 | 34 | 111 | 470 | 546 | 1.37e-20 | 85.9 |
| Msa1094090 | MtrunA17_Chr8g0352431 | 53.571 | 84 | 35 | 2 | 34 | 114 | 464 | 546 | 2.51e-20 | 85.1 |
| Msa1094090 | MtrunA17_Chr4g0002431 | 53.846 | 78 | 35 | 1 | 34 | 111 | 201 | 277 | 4.28e-20 | 83.6 |
| Msa1094090 | MtrunA17_Chr3g0120141 | 51.163 | 86 | 42 | 0 | 26 | 111 | 171 | 256 | 5.51e-20 | 82.8 |
| Msa1094090 | MtrunA17_Chr5g0411291 | 57.534 | 73 | 31 | 0 | 39 | 111 | 687 | 759 | 1.23e-19 | 83.2 |
| Msa1094090 | MtrunA17_Chr1g0212651 | 57.971 | 69 | 29 | 0 | 34 | 102 | 277 | 345 | 1.51e-19 | 82.0 |
| Msa1094090 | MtrunA17_Chr4g0002491 | 60.759 | 79 | 31 | 0 | 33 | 111 | 183 | 261 | 6.84e-18 | 77.4 |
| Msa1094090 | MtrunA17_Chr8g0377721 | 66.102 | 59 | 20 | 0 | 53 | 111 | 3 | 61 | 1.97e-17 | 71.6 |
| Msa1094090 | MtrunA17_Chr3g0121091 | 50.000 | 78 | 39 | 0 | 34 | 111 | 421 | 498 | 3.02e-17 | 76.3 |
| Msa1094090 | MtrunA17_Chr6g0461961 | 66.071 | 56 | 19 | 0 | 34 | 89 | 281 | 336 | 7.30e-17 | 74.7 |
| Msa1094090 | MtrunA17_Chr3g0106541 | 51.948 | 77 | 37 | 0 | 35 | 111 | 425 | 501 | 1.73e-16 | 74.3 |
| Msa1094090 | MtrunA17_Chr6g0460701 | 62.338 | 77 | 28 | 1 | 35 | 111 | 355 | 430 | 2.24e-16 | 73.9 |
| Msa1094090 | MtrunA17_Chr4g0002671 | 46.753 | 77 | 40 | 1 | 35 | 111 | 445 | 520 | 7.94e-16 | 72.4 |
| Msa1094090 | MtrunA17_Chr1g0182691 | 58.182 | 55 | 23 | 0 | 57 | 111 | 80 | 134 | 8.45e-15 | 67.0 |
| Msa1094090 | MtrunA17_Chr1g0182741 | 58.182 | 55 | 23 | 0 | 57 | 111 | 427 | 481 | 1.19e-14 | 68.9 |
| Msa1094090 | MtrunA17_Chr1g0182771 | 58.182 | 55 | 23 | 0 | 57 | 111 | 427 | 481 | 1.19e-14 | 68.9 |
| Msa1094090 | MtrunA17_Chr4g0002481 | 55.738 | 61 | 26 | 1 | 34 | 94 | 201 | 260 | 4.33e-14 | 66.6 |
| Msa1094090 | MtrunA17_Chr3g0115831 | 41.667 | 96 | 54 | 2 | 16 | 111 | 153 | 246 | 2.09e-13 | 64.7 |
| Msa1094090 | MtrunA17_Chr2g0316761 | 50.000 | 66 | 33 | 0 | 34 | 99 | 70 | 135 | 2.45e-13 | 62.4 |
| Msa1094090 | MtrunA17_Chr4g0000881 | 68.085 | 47 | 14 | 1 | 34 | 80 | 85 | 130 | 8.68e-13 | 60.8 |
| Msa1094090 | MtrunA17_Chr4g0000471 | 55.172 | 58 | 26 | 0 | 51 | 108 | 1 | 58 | 8.90e-12 | 56.2 |
| Msa1094090 | MtrunA17_Chr1g0155941 | 48.750 | 80 | 38 | 1 | 35 | 111 | 42 | 121 | 9.76e-12 | 58.9 |
| Msa1094090 | MtrunA17_Chr4g0002581 | 65.909 | 44 | 15 | 0 | 33 | 76 | 232 | 275 | 7.38e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094090 | AT1G80630.1 | 36.607 | 112 | 67 | 3 | 3 | 111 | 392 | 502 | 8.49e-14 | 67.0 |
Find 17 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGTTAATTCTAAATTTA+AGG | 0.123718 | 7_3:-15115011 | Msa1094090:CDS |
| GATGTTAATTCTAAATTTAA+GGG | 0.396362 | 7_3:-15115010 | Msa1094090:CDS |
| TGTAATGATGTCACAAAGAA+AGG | 0.454036 | 7_3:-15113671 | Msa1094090:CDS |
| TGTTCAAGAGTGAAGCTACT+TGG | 0.462467 | 7_3:-15113815 | Msa1094090:CDS |
| TCACTCTTGAACAGTGGGCT+AGG | 0.466509 | 7_3:+15113825 | None:intergenic |
| AAGTTCAACACCTCCAGCTT+GGG | 0.475609 | 7_3:+15113776 | None:intergenic |
| GATTGACAATCTTAGATTCA+AGG | 0.491942 | 7_3:-15114981 | Msa1094090:CDS |
| CATTACAATCGTCCACAGAT+AGG | 0.492906 | 7_3:+15113687 | None:intergenic |
| GATTGTGAGTTAGATGATAG+TGG | 0.498144 | 7_3:-15115034 | Msa1094090:CDS |
| CAAGTTCAACACCTCCAGCT+TGG | 0.504061 | 7_3:+15113775 | None:intergenic |
| ATGTTAATTCTAAATTTAAG+GGG | 0.563627 | 7_3:-15115009 | Msa1094090:CDS |
| GTTGAACTTGTCAAATACAA+AGG | 0.569561 | 7_3:-15113762 | Msa1094090:CDS |
| TGCTCACAATTGAGAGAACA+TGG | 0.569857 | 7_3:-15113626 | Msa1094090:CDS |
| TAGCTTCACTCTTGAACAGT+GGG | 0.570053 | 7_3:+15113820 | None:intergenic |
| GTAGCTTCACTCTTGAACAG+TGG | 0.620716 | 7_3:+15113819 | None:intergenic |
| GTGATCTCAAAGAATTGTTG+CGG | 0.629680 | 7_3:-15113719 | Msa1094090:CDS |
| AAAGAAAGGAGTGAAACATG+TGG | 0.671368 | 7_3:-15113657 | Msa1094090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAATAAAAGTTTTATTTA+TGG | + | chr7_3:15114708-15114727 | None:intergenic | 10.0% |
| !!! | GAAAATAAAAGTTTTATTTA+TGG | + | chr7_3:15114708-15114727 | None:intergenic | 10.0% |
| !! | TGATGTTAATTCTAAATTTA+AGG | - | chr7_3:15113627-15113646 | Msa1094090:CDS | 15.0% |
| !! | GATGTTAATTCTAAATTTAA+GGG | - | chr7_3:15113628-15113647 | Msa1094090:CDS | 15.0% |
| !! | ATGTTAATTCTAAATTTAAG+GGG | - | chr7_3:15113629-15113648 | Msa1094090:CDS | 15.0% |
| !!! | TATGAAATTTTGTAATTTTC+TGG | - | chr7_3:15113794-15113813 | Msa1094090:CDS | 15.0% |
| !!! | CTTATTTTTGGATTTAAATT+TGG | + | chr7_3:15114075-15114094 | None:intergenic | 15.0% |
| !! | TTAAATCCAAAAATAAGTTA+AGG | - | chr7_3:15114078-15114097 | Msa1094090:intron | 15.0% |
| !! | TAAATCCAAAAATAAGTTAA+GGG | - | chr7_3:15114079-15114098 | Msa1094090:intron | 15.0% |
| !! | ATTAAAGTGATATTATGATT+TGG | - | chr7_3:15114311-15114330 | Msa1094090:intron | 15.0% |
| !! | TGATGTTAATTCTAAATTTA+AGG | - | chr7_3:15113627-15113646 | Msa1094090:CDS | 15.0% |
| !! | GATGTTAATTCTAAATTTAA+GGG | - | chr7_3:15113628-15113647 | Msa1094090:CDS | 15.0% |
| !! | ATGTTAATTCTAAATTTAAG+GGG | - | chr7_3:15113629-15113648 | Msa1094090:CDS | 15.0% |
| !!! | TATGAAATTTTGTAATTTTC+TGG | - | chr7_3:15113794-15113813 | Msa1094090:CDS | 15.0% |
| !!! | CTTATTTTTGGATTTAAATT+TGG | + | chr7_3:15114075-15114094 | None:intergenic | 15.0% |
| !! | TTAAATCCAAAAATAAGTTA+AGG | - | chr7_3:15114078-15114097 | Msa1094090:intron | 15.0% |
| !! | TAAATCCAAAAATAAGTTAA+GGG | - | chr7_3:15114079-15114098 | Msa1094090:intron | 15.0% |
| !! | ATTAAAGTGATATTATGATT+TGG | - | chr7_3:15114311-15114330 | Msa1094090:intron | 15.0% |
| !!! | TTTGTTTTGCAATATTTTTC+TGG | - | chr7_3:15113739-15113758 | Msa1094090:CDS | 20.0% |
| !! | AAGAAGATGAAGAAAAAATT+AGG | - | chr7_3:15113871-15113890 | Msa1094090:intron | 20.0% |
| !!! | CAGATTTTGAAAAAAACTAA+CGG | - | chr7_3:15113982-15114001 | Msa1094090:intron | 20.0% |
| !! | AAAAGACTTAATTAATGCTT+TGG | + | chr7_3:15114106-15114125 | None:intergenic | 20.0% |
| !! | TTTATAGAAGAGAAATGTTA+AGG | - | chr7_3:15114162-15114181 | Msa1094090:intron | 20.0% |
| !! | GAGAGACAAAATTAAAATAA+CGG | + | chr7_3:15114526-15114545 | None:intergenic | 20.0% |
| !! | TATAAAGCATATTGTTTCAA+CGG | - | chr7_3:15114616-15114635 | Msa1094090:intron | 20.0% |
| !! | ACTACAATTGCTTAAATATA+CGG | + | chr7_3:15114752-15114771 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGCAATATTTTTC+TGG | - | chr7_3:15113739-15113758 | Msa1094090:CDS | 20.0% |
| !! | AAGAAGATGAAGAAAAAATT+AGG | - | chr7_3:15113871-15113890 | Msa1094090:intron | 20.0% |
| !!! | CAGATTTTGAAAAAAACTAA+CGG | - | chr7_3:15113982-15114001 | Msa1094090:intron | 20.0% |
| !! | AAAAGACTTAATTAATGCTT+TGG | + | chr7_3:15114106-15114125 | None:intergenic | 20.0% |
| !! | TTTATAGAAGAGAAATGTTA+AGG | - | chr7_3:15114162-15114181 | Msa1094090:intron | 20.0% |
| !! | GAGAGACAAAATTAAAATAA+CGG | + | chr7_3:15114526-15114545 | None:intergenic | 20.0% |
| !! | TATAAAGCATATTGTTTCAA+CGG | - | chr7_3:15114616-15114635 | Msa1094090:intron | 20.0% |
| !! | ACTACAATTGCTTAAATATA+CGG | + | chr7_3:15114752-15114771 | None:intergenic | 20.0% |
| !!! | TTTCTGGATTTTGTTTAAGA+TGG | - | chr7_3:15113810-15113829 | Msa1094090:CDS | 25.0% |
| ! | AAGATGAAGAAAAAATTAGG+TGG | - | chr7_3:15113874-15113893 | Msa1094090:intron | 25.0% |
| !!! | ATTTTGAAAAAAACTAACGG+AGG | - | chr7_3:15113985-15114004 | Msa1094090:intron | 25.0% |
| !!! | TTTTGAAAAAAACTAACGGA+GGG | - | chr7_3:15113986-15114005 | Msa1094090:intron | 25.0% |
| ! | AACTTTAAACTGTCTCAAAT+TGG | + | chr7_3:15114046-15114065 | None:intergenic | 25.0% |
| !! | ATTTGAGACAGTTTAAAGTT+AGG | - | chr7_3:15114046-15114065 | Msa1094090:intron | 25.0% |
| !! | TTTGAGACAGTTTAAAGTTA+GGG | - | chr7_3:15114047-15114066 | Msa1094090:intron | 25.0% |
| !! | CTAGACACTTTAATTTCAAT+CGG | + | chr7_3:15114205-15114224 | None:intergenic | 25.0% |
| ! | GTTGAAAATATAGGAAAAAC+TGG | + | chr7_3:15114432-15114451 | None:intergenic | 25.0% |
| !!! | TTTTGGAAGGTTGAAAATAT+AGG | + | chr7_3:15114441-15114460 | None:intergenic | 25.0% |
| !!! | TTTCTGGATTTTGTTTAAGA+TGG | - | chr7_3:15113810-15113829 | Msa1094090:CDS | 25.0% |
| ! | AAGATGAAGAAAAAATTAGG+TGG | - | chr7_3:15113874-15113893 | Msa1094090:intron | 25.0% |
| !!! | ATTTTGAAAAAAACTAACGG+AGG | - | chr7_3:15113985-15114004 | Msa1094090:intron | 25.0% |
| !!! | TTTTGAAAAAAACTAACGGA+GGG | - | chr7_3:15113986-15114005 | Msa1094090:intron | 25.0% |
| ! | AACTTTAAACTGTCTCAAAT+TGG | + | chr7_3:15114046-15114065 | None:intergenic | 25.0% |
| !! | ATTTGAGACAGTTTAAAGTT+AGG | - | chr7_3:15114046-15114065 | Msa1094090:intron | 25.0% |
| !! | TTTGAGACAGTTTAAAGTTA+GGG | - | chr7_3:15114047-15114066 | Msa1094090:intron | 25.0% |
| !! | CTAGACACTTTAATTTCAAT+CGG | + | chr7_3:15114205-15114224 | None:intergenic | 25.0% |
| ! | GTTGAAAATATAGGAAAAAC+TGG | + | chr7_3:15114432-15114451 | None:intergenic | 25.0% |
| !!! | TTTTGGAAGGTTGAAAATAT+AGG | + | chr7_3:15114441-15114460 | None:intergenic | 25.0% |
| GATTGACAATCTTAGATTCA+AGG | - | chr7_3:15113657-15113676 | Msa1094090:CDS | 30.0% | |
| !!! | TTTTCTGGAATTTGCTATGT+TGG | - | chr7_3:15113754-15113773 | Msa1094090:CDS | 30.0% |
| AAGAAAAAATTAGGTGGTTG+TGG | - | chr7_3:15113880-15113899 | Msa1094090:intron | 30.0% | |
| ! | TTTGATTGATGATCAATGGT+TGG | + | chr7_3:15113939-15113958 | None:intergenic | 30.0% |
| !!! | CAGTTTTGATTGATGATCAA+TGG | + | chr7_3:15113943-15113962 | None:intergenic | 30.0% |
| TTTGAAAAAAACTAACGGAG+GGG | - | chr7_3:15113987-15114006 | Msa1094090:intron | 30.0% | |
| GTAAACGGTGTAAGATTTAA+GGG | - | chr7_3:15114019-15114038 | Msa1094090:intron | 30.0% | |
| ! | TTGAGACAGTTTAAAGTTAG+GGG | - | chr7_3:15114048-15114067 | Msa1094090:intron | 30.0% |
| !! | TTGGTCCCTTAACTTATTTT+TGG | + | chr7_3:15114087-15114106 | None:intergenic | 30.0% |
| !! | TGGTTCATTTAAGCTTTGTT+TGG | + | chr7_3:15114491-15114510 | None:intergenic | 30.0% |
| ! | AATAACGGAGAGATCATAAA+TGG | + | chr7_3:15114511-15114530 | None:intergenic | 30.0% |
| TTTCATCATCACTAACGTAA+AGG | + | chr7_3:15114581-15114600 | None:intergenic | 30.0% | |
| TTACATCATCACTAACGTAA+AGG | + | chr7_3:15114778-15114797 | None:intergenic | 30.0% | |
| ! | GTTAGTGATGATGTAATATC+AGG | - | chr7_3:15114782-15114801 | Msa1094090:intron | 30.0% |
| GTTGAACTTGTCAAATACAA+AGG | - | chr7_3:15114876-15114895 | Msa1094090:intron | 30.0% | |
| TGTAATGATGTCACAAAGAA+AGG | - | chr7_3:15114967-15114986 | Msa1094090:CDS | 30.0% | |
| GATTGACAATCTTAGATTCA+AGG | - | chr7_3:15113657-15113676 | Msa1094090:CDS | 30.0% | |
| !!! | TTTTCTGGAATTTGCTATGT+TGG | - | chr7_3:15113754-15113773 | Msa1094090:CDS | 30.0% |
| AAGAAAAAATTAGGTGGTTG+TGG | - | chr7_3:15113880-15113899 | Msa1094090:intron | 30.0% | |
| ! | TTTGATTGATGATCAATGGT+TGG | + | chr7_3:15113939-15113958 | None:intergenic | 30.0% |
| !!! | CAGTTTTGATTGATGATCAA+TGG | + | chr7_3:15113943-15113962 | None:intergenic | 30.0% |
| TTTGAAAAAAACTAACGGAG+GGG | - | chr7_3:15113987-15114006 | Msa1094090:intron | 30.0% | |
| GTAAACGGTGTAAGATTTAA+GGG | - | chr7_3:15114019-15114038 | Msa1094090:intron | 30.0% | |
| ! | TTGAGACAGTTTAAAGTTAG+GGG | - | chr7_3:15114048-15114067 | Msa1094090:intron | 30.0% |
| !! | TTGGTCCCTTAACTTATTTT+TGG | + | chr7_3:15114087-15114106 | None:intergenic | 30.0% |
| !! | TGGTTCATTTAAGCTTTGTT+TGG | + | chr7_3:15114491-15114510 | None:intergenic | 30.0% |
| ! | AATAACGGAGAGATCATAAA+TGG | + | chr7_3:15114511-15114530 | None:intergenic | 30.0% |
| TTTCATCATCACTAACGTAA+AGG | + | chr7_3:15114581-15114600 | None:intergenic | 30.0% | |
| TTACATCATCACTAACGTAA+AGG | + | chr7_3:15114778-15114797 | None:intergenic | 30.0% | |
| ! | GTTAGTGATGATGTAATATC+AGG | - | chr7_3:15114782-15114801 | Msa1094090:intron | 30.0% |
| GTTGAACTTGTCAAATACAA+AGG | - | chr7_3:15114876-15114895 | Msa1094090:intron | 30.0% | |
| TGTAATGATGTCACAAAGAA+AGG | - | chr7_3:15114967-15114986 | Msa1094090:CDS | 30.0% | |
| GATTGTGAGTTAGATGATAG+TGG | - | chr7_3:15113604-15113623 | Msa1094090:CDS | 35.0% | |
| TGCAGATGAAGAAGATTGAA+AGG | - | chr7_3:15113846-15113865 | Msa1094090:intron | 35.0% | |
| GCAGATGAAGAAGATTGAAA+GGG | - | chr7_3:15113847-15113866 | Msa1094090:intron | 35.0% | |
| CAGATGAAGAAGATTGAAAG+GGG | - | chr7_3:15113848-15113867 | Msa1094090:intron | 35.0% | |
| CATCAATCAAAACTGACATG+TGG | - | chr7_3:15113948-15113967 | Msa1094090:intron | 35.0% | |
| ! | TCTTACACCGTTTACCATTT+TGG | + | chr7_3:15114014-15114033 | None:intergenic | 35.0% |
| GGTAAACGGTGTAAGATTTA+AGG | - | chr7_3:15114018-15114037 | Msa1094090:intron | 35.0% | |
| !! | AGCTTTGTTTGGAAGTTTGA+AGG | + | chr7_3:15114480-15114499 | None:intergenic | 35.0% |
| ! | GCTACTTGGAATCAATTTTG+TGG | - | chr7_3:15114837-15114856 | Msa1094090:intron | 35.0% |
| GTGATCTCAAAGAATTGTTG+CGG | - | chr7_3:15114919-15114938 | Msa1094090:intron | 35.0% | |
| AAAGAAAGGAGTGAAACATG+TGG | - | chr7_3:15114981-15115000 | Msa1094090:CDS | 35.0% | |
| GATTGTGAGTTAGATGATAG+TGG | - | chr7_3:15113604-15113623 | Msa1094090:CDS | 35.0% | |
| TGCAGATGAAGAAGATTGAA+AGG | - | chr7_3:15113846-15113865 | Msa1094090:intron | 35.0% | |
| GCAGATGAAGAAGATTGAAA+GGG | - | chr7_3:15113847-15113866 | Msa1094090:intron | 35.0% | |
| CAGATGAAGAAGATTGAAAG+GGG | - | chr7_3:15113848-15113867 | Msa1094090:intron | 35.0% | |
| CATCAATCAAAACTGACATG+TGG | - | chr7_3:15113948-15113967 | Msa1094090:intron | 35.0% | |
| ! | TCTTACACCGTTTACCATTT+TGG | + | chr7_3:15114014-15114033 | None:intergenic | 35.0% |
| GGTAAACGGTGTAAGATTTA+AGG | - | chr7_3:15114018-15114037 | Msa1094090:intron | 35.0% | |
| !! | AGCTTTGTTTGGAAGTTTGA+AGG | + | chr7_3:15114480-15114499 | None:intergenic | 35.0% |
| ! | GCTACTTGGAATCAATTTTG+TGG | - | chr7_3:15114837-15114856 | Msa1094090:intron | 35.0% |
| GTGATCTCAAAGAATTGTTG+CGG | - | chr7_3:15114919-15114938 | Msa1094090:intron | 35.0% | |
| AAAGAAAGGAGTGAAACATG+TGG | - | chr7_3:15114981-15115000 | Msa1094090:CDS | 35.0% | |
| ATCAATGGTTGGATCACAGA+GGG | + | chr7_3:15113928-15113947 | None:intergenic | 40.0% | |
| TCAAAACTGACATGTGGCAA+AGG | - | chr7_3:15113954-15113973 | Msa1094090:intron | 40.0% | |
| CAAAACTGACATGTGGCAAA+GGG | - | chr7_3:15113955-15113974 | Msa1094090:intron | 40.0% | |
| ATTTCAATCGGTGAGCTAGA+AGG | + | chr7_3:15114193-15114212 | None:intergenic | 40.0% | |
| TGTTTGGAAGTTTGAAGGAG+AGG | + | chr7_3:15114475-15114494 | None:intergenic | 40.0% | |
| TAGCTTCACTCTTGAACAGT+GGG | + | chr7_3:15114821-15114840 | None:intergenic | 40.0% | |
| TGTTCAAGAGTGAAGCTACT+TGG | - | chr7_3:15114823-15114842 | Msa1094090:intron | 40.0% | |
| CATTACAATCGTCCACAGAT+AGG | + | chr7_3:15114954-15114973 | None:intergenic | 40.0% | |
| TGCTCACAATTGAGAGAACA+TGG | - | chr7_3:15115012-15115031 | Msa1094090:CDS | 40.0% | |
| ATCAATGGTTGGATCACAGA+GGG | + | chr7_3:15113928-15113947 | None:intergenic | 40.0% | |
| TCAAAACTGACATGTGGCAA+AGG | - | chr7_3:15113954-15113973 | Msa1094090:intron | 40.0% | |
| CAAAACTGACATGTGGCAAA+GGG | - | chr7_3:15113955-15113974 | Msa1094090:intron | 40.0% | |
| ATTTCAATCGGTGAGCTAGA+AGG | + | chr7_3:15114193-15114212 | None:intergenic | 40.0% | |
| TGTTTGGAAGTTTGAAGGAG+AGG | + | chr7_3:15114475-15114494 | None:intergenic | 40.0% | |
| TAGCTTCACTCTTGAACAGT+GGG | + | chr7_3:15114821-15114840 | None:intergenic | 40.0% | |
| TGTTCAAGAGTGAAGCTACT+TGG | - | chr7_3:15114823-15114842 | Msa1094090:intron | 40.0% | |
| CATTACAATCGTCCACAGAT+AGG | + | chr7_3:15114954-15114973 | None:intergenic | 40.0% | |
| TGCTCACAATTGAGAGAACA+TGG | - | chr7_3:15115012-15115031 | Msa1094090:CDS | 40.0% | |
| GATCAATGGTTGGATCACAG+AGG | + | chr7_3:15113929-15113948 | None:intergenic | 45.0% | |
| GAGGGGACCAAAATGGTAAA+CGG | - | chr7_3:15114004-15114023 | Msa1094090:intron | 45.0% | |
| AAGTTTGAAGGAGAGGAGAG+GGG | + | chr7_3:15114468-15114487 | None:intergenic | 45.0% | |
| GAAGTTTGAAGGAGAGGAGA+GGG | + | chr7_3:15114469-15114488 | None:intergenic | 45.0% | |
| GTAGCTTCACTCTTGAACAG+TGG | + | chr7_3:15114822-15114841 | None:intergenic | 45.0% | |
| ! | CAATTTTGTGGTTCCCAAGC+TGG | - | chr7_3:15114849-15114868 | Msa1094090:intron | 45.0% |
| AAGTTCAACACCTCCAGCTT+GGG | + | chr7_3:15114865-15114884 | None:intergenic | 45.0% | |
| ! | CGGACTTTTGTACCTATCTG+TGG | - | chr7_3:15114939-15114958 | Msa1094090:intron | 45.0% |
| GATCAATGGTTGGATCACAG+AGG | + | chr7_3:15113929-15113948 | None:intergenic | 45.0% | |
| GAGGGGACCAAAATGGTAAA+CGG | - | chr7_3:15114004-15114023 | Msa1094090:intron | 45.0% | |
| AAGTTTGAAGGAGAGGAGAG+GGG | + | chr7_3:15114468-15114487 | None:intergenic | 45.0% | |
| GAAGTTTGAAGGAGAGGAGA+GGG | + | chr7_3:15114469-15114488 | None:intergenic | 45.0% | |
| GTAGCTTCACTCTTGAACAG+TGG | + | chr7_3:15114822-15114841 | None:intergenic | 45.0% | |
| ! | CAATTTTGTGGTTCCCAAGC+TGG | - | chr7_3:15114849-15114868 | Msa1094090:intron | 45.0% |
| AAGTTCAACACCTCCAGCTT+GGG | + | chr7_3:15114865-15114884 | None:intergenic | 45.0% | |
| ! | CGGACTTTTGTACCTATCTG+TGG | - | chr7_3:15114939-15114958 | Msa1094090:intron | 45.0% |
| ACTAACGGAGGGGACCAAAA+TGG | - | chr7_3:15113997-15114016 | Msa1094090:intron | 50.0% | |
| GGAAGTTTGAAGGAGAGGAG+AGG | + | chr7_3:15114470-15114489 | None:intergenic | 50.0% | |
| ! | TCACTCTTGAACAGTGGGCT+AGG | + | chr7_3:15114816-15114835 | None:intergenic | 50.0% |
| ! | TTTTGTGGTTCCCAAGCTGG+AGG | - | chr7_3:15114852-15114871 | Msa1094090:intron | 50.0% |
| CAAGTTCAACACCTCCAGCT+TGG | + | chr7_3:15114866-15114885 | None:intergenic | 50.0% | |
| ACTAACGGAGGGGACCAAAA+TGG | - | chr7_3:15113997-15114016 | Msa1094090:intron | 50.0% | |
| GGAAGTTTGAAGGAGAGGAG+AGG | + | chr7_3:15114470-15114489 | None:intergenic | 50.0% | |
| ! | TCACTCTTGAACAGTGGGCT+AGG | + | chr7_3:15114816-15114835 | None:intergenic | 50.0% |
| ! | TTTTGTGGTTCCCAAGCTGG+AGG | - | chr7_3:15114852-15114871 | Msa1094090:intron | 50.0% |
| CAAGTTCAACACCTCCAGCT+TGG | + | chr7_3:15114866-15114885 | None:intergenic | 50.0% | |
| !!! | GGAGAGGGGAAGGTTTTGGA+AGG | + | chr7_3:15114454-15114473 | None:intergenic | 55.0% |
| ! | GAGAGGAGAGGGGAAGGTTT+TGG | + | chr7_3:15114458-15114477 | None:intergenic | 55.0% |
| TTGAAGGAGAGGAGAGGGGA+AGG | + | chr7_3:15114464-15114483 | None:intergenic | 55.0% | |
| !!! | GGAGAGGGGAAGGTTTTGGA+AGG | + | chr7_3:15114454-15114473 | None:intergenic | 55.0% |
| ! | GAGAGGAGAGGGGAAGGTTT+TGG | + | chr7_3:15114458-15114477 | None:intergenic | 55.0% |
| TTGAAGGAGAGGAGAGGGGA+AGG | + | chr7_3:15114464-15114483 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 15113589 | 15115071 | 15113589 | ID=Msa1094090;Name=Msa1094090 |
| chr7_3 | mRNA | 15113589 | 15115071 | 15113589 | ID=Msa1094090-mRNA-1;Parent=Msa1094090;Name=Msa1094090-mRNA-1;_AED=0.70;_eAED=1.00;_QI=0|0|0|0.5|1|1|2|0|124 |
| chr7_3 | exon | 15114965 | 15115071 | 15114965 | ID=Msa1094090-mRNA-1:exon:3482;Parent=Msa1094090-mRNA-1 |
| chr7_3 | exon | 15113589 | 15113856 | 15113589 | ID=Msa1094090-mRNA-1:exon:3481;Parent=Msa1094090-mRNA-1 |
| chr7_3 | CDS | 15114965 | 15115071 | 15114965 | ID=Msa1094090-mRNA-1:cds;Parent=Msa1094090-mRNA-1 |
| chr7_3 | CDS | 15113589 | 15113856 | 15113589 | ID=Msa1094090-mRNA-1:cds;Parent=Msa1094090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
