AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1095560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1095560 MtrunA17_Chr7g0223291 99.692 649 2 0 1 649 1 649 0.0 1328
Msa1095560 MtrunA17_Chr7g0223181 93.683 649 40 1 1 649 1 648 0.0 1243
Msa1095560 MtrunA17_Chr7g0262821 92.661 654 38 3 1 649 1 649 0.0 1241
Msa1095560 MtrunA17_Chr4g0031301 92.296 649 50 0 1 649 1 649 0.0 1230
Msa1095560 MtrunA17_Chr4g0031321 91.988 649 52 0 1 649 1 649 0.0 1226
Msa1095560 MtrunA17_Chr4g0073741 86.697 654 81 2 1 649 1 653 0.0 1147
Msa1095560 MtrunA17_Chr6g0462681 66.829 615 203 1 1 615 1 614 0.0 846
Msa1095560 MtrunA17_Chr7g0223751 65.079 630 215 4 1 628 1 627 0.0 832
Msa1095560 MtrunA17_Chr6g0462601 65.909 616 209 1 1 616 1 615 0.0 831
Msa1095560 MtrunA17_Chr7g0223711 65.217 621 212 3 1 619 1 619 0.0 831
Msa1095560 MtrunA17_Chr2g0284681 67.053 604 179 3 9 606 8 597 0.0 823
Msa1095560 MtrunA17_Chr7g0221661 65.203 615 210 3 1 613 1 613 0.0 815
Msa1095560 MtrunA17_Chr5g0427901 63.854 628 212 4 1 615 1 626 0.0 814
Msa1095560 MtrunA17_Chr8g0350731 64.762 630 217 4 1 628 29 655 0.0 813
Msa1095560 MtrunA17_Chr2g0293581 65.579 613 207 3 6 615 7 618 0.0 812
Msa1095560 MtrunA17_Chr2g0298851 65.105 619 209 6 1 615 1 616 0.0 807
Msa1095560 MtrunA17_Chr7g0223741 65.997 597 199 3 1 595 1 595 0.0 806
Msa1095560 MtrunA17_Chr7g0233311 63.916 618 219 3 1 615 1 617 0.0 803
Msa1095560 MtrunA17_Chr8g0388761 65.147 614 208 4 7 618 36 645 0.0 799
Msa1095560 MtrunA17_Chr8g0388671 65.147 614 208 4 7 618 36 645 0.0 796
Msa1095560 MtrunA17_Chr7g0223801 62.885 617 223 5 1 615 1 613 0.0 795
Msa1095560 MtrunA17_Chr7g0223621 64.426 610 212 4 1 608 1 607 0.0 793
Msa1095560 MtrunA17_Chr7g0223731 63.592 618 220 4 1 616 1 615 0.0 793
Msa1095560 MtrunA17_Chr7g0223031 63.666 611 217 4 1 609 1 608 0.0 788
Msa1095560 MtrunA17_Chr6g0462711 63.074 631 225 4 2 626 3 631 0.0 785
Msa1095560 MtrunA17_Chr7g0248131 63.419 626 219 8 1 619 1 623 0.0 783
Msa1095560 MtrunA17_Chr2g0298861 61.587 630 225 6 1 615 1 628 0.0 782
Msa1095560 MtrunA17_Chr6g0462771 61.682 642 237 3 1 637 1 638 0.0 781
Msa1095560 MtrunA17_Chr7g0223631 63.285 621 209 6 1 619 1 604 0.0 778
Msa1095560 MtrunA17_Chr4g0040931 62.520 611 224 4 1 608 1 609 0.0 778
Msa1095560 MtrunA17_Chr2g0287631 64.563 618 215 3 1 615 1 617 0.0 778
Msa1095560 MtrunA17_Chr7g0223781 63.252 615 220 3 1 613 1 611 0.0 777
Msa1095560 MtrunA17_Chr6g0462641 62.119 623 230 2 1 618 1 622 0.0 776
Msa1095560 MtrunA17_Chr7g0248151 63.462 624 220 6 1 619 1 621 0.0 773
Msa1095560 MtrunA17_Chr7g0225671 63.029 614 219 7 6 615 13 622 0.0 773
Msa1095560 MtrunA17_Chr7g0223721 61.650 618 232 4 1 615 1 616 0.0 768
Msa1095560 MtrunA17_Chr7g0223701 60.653 643 236 7 1 629 1 640 0.0 766
Msa1095560 MtrunA17_Chr7g0223851 62.359 619 226 6 1 615 10 625 0.0 761
Msa1095560 MtrunA17_Chr2g0296391 68.620 529 163 2 1 527 1 528 0.0 749
Msa1095560 MtrunA17_Chr7g0233301 61.031 621 205 6 1 617 1 588 0.0 749
Msa1095560 MtrunA17_Chr7g0217971 60.778 617 213 5 1 615 1 590 0.0 738
Msa1095560 MtrunA17_Chr7g0223821 61.836 621 225 7 1 613 1 617 0.0 733
Msa1095560 MtrunA17_Chr8g0390821 56.632 671 219 10 1 616 1 654 0.0 724
Msa1095560 MtrunA17_Chr6g0462611 63.653 553 198 2 63 615 13 562 0.0 716
Msa1095560 MtrunA17_Chr4g0012541 58.643 619 240 7 1 615 1 607 0.0 707
Msa1095560 MtrunA17_Chr7g0223831 58.643 619 219 8 1 614 1 587 0.0 704
Msa1095560 MtrunA17_Chr7g0223541 60.387 568 223 2 61 628 20 585 0.0 690
Msa1095560 MtrunA17_Chr7g0215261 57.512 619 221 7 1 614 1 582 0.0 688
Msa1095560 MtrunA17_Chr2g0299921 85.751 386 53 1 4 389 1024 1407 0.0 678
Msa1095560 MtrunA17_Chr2g0299921 84.675 385 56 2 4 387 1408 1790 0.0 646
Msa1095560 MtrunA17_Chr7g0228281 56.472 618 219 7 1 615 62 632 0.0 675
Msa1095560 MtrunA17_Chr2g0299851 83.463 387 62 1 1 387 1030 1414 0.0 668
Msa1095560 MtrunA17_Chr7g0223681 61.394 531 202 3 89 619 2 529 0.0 658
Msa1095560 MtrunA17_Chr2g0299791 82.732 388 65 1 1 388 1034 1419 0.0 657
Msa1095560 MtrunA17_Chr2g0293601 64.162 519 149 3 1 517 1 484 0.0 655
Msa1095560 MtrunA17_Chr2g0299821 72.222 450 111 3 1 436 1 450 0.0 638
Msa1095560 MtrunA17_Chr2g0299821 81.053 95 11 1 452 539 390 484 3.87e-40 153
Msa1095560 MtrunA17_Chr2g0331381 59.515 536 151 6 9 542 6 477 0.0 635
Msa1095560 MtrunA17_Chr2g0299881 77.307 401 85 3 6 402 1035 1433 0.0 628
Msa1095560 MtrunA17_Chr2g0299881 77.273 66 11 1 183 248 1414 1475 1.59e-22 103
Msa1095560 MtrunA17_Chr2g0293561 73.867 375 96 1 1 373 1 375 0.0 585
Msa1095560 MtrunA17_Chr1g0166551 50.814 614 184 8 6 615 2 501 0.0 575
Msa1095560 MtrunA17_Chr2g0279901 51.163 602 260 12 10 602 57 633 0.0 565
Msa1095560 MtrunA17_Chr6g0462861 49.682 628 280 11 1 615 1 605 0.0 562
Msa1095560 MtrunA17_Chr4g0049501 52.069 580 248 10 10 580 54 612 0.0 556
Msa1095560 MtrunA17_Chr2g0277021 47.344 640 296 13 10 638 72 681 1.81e-178 523
Msa1095560 MtrunA17_Chr2g0293271 55.606 437 121 4 21 455 43 408 2.29e-163 474
Msa1095560 MtrunA17_Chr1g0151991 70.447 291 84 1 1 289 1 291 5.12e-148 430
Msa1095560 MtrunA17_Chr7g0245521 71.062 273 77 1 1 271 1 273 8.73e-139 406
Msa1095560 MtrunA17_Chr6g0462631 58.735 332 93 4 86 415 8 297 6.56e-121 361
Msa1095560 MtrunA17_Chr7g0223761 48.413 378 151 2 239 615 3 337 2.99e-117 353
Msa1095560 MtrunA17_Chr7g0245531 57.643 314 131 2 303 616 2 313 7.64e-116 349
Msa1095560 MtrunA17_Chr6g0462751 53.582 349 103 3 65 411 12 303 2.59e-115 347
Msa1095560 MtrunA17_Chr1g0188601 75.393 191 47 0 90 280 1 191 9.63e-100 303
Msa1095560 MtrunA17_Chr1g0152001 54.209 297 131 5 313 608 1 293 1.06e-99 307
Msa1095560 MtrunA17_Chr5g0394391 37.376 503 288 10 9 494 29 521 3.86e-99 315
Msa1095560 MtrunA17_Chr7g0223671 71.892 185 52 0 72 256 8 192 2.87e-93 286
Msa1095560 MtrunA17_Chr1g0188611 53.872 297 127 4 320 615 1 288 1.38e-86 272
Msa1095560 MtrunA17_Chr2g0331901 33.839 461 287 5 10 457 4 459 5.90e-83 279
Msa1095560 MtrunA17_Chr4g0004331 34.703 438 270 4 10 434 4 438 3.56e-82 276
Msa1095560 MtrunA17_Chr6g0462791 71.591 176 49 1 106 281 1 175 2.74e-81 254
Msa1095560 MtrunA17_Chr5g0444001 34.192 427 272 4 10 430 4 427 3.53e-76 253
Msa1095560 MtrunA17_Chr3g0098761 33.810 420 273 4 10 428 4 419 4.16e-76 259
Msa1095560 MtrunA17_Chr7g0223771 71.242 153 44 0 92 244 2 154 9.09e-73 231
Msa1095560 MtrunA17_Chr5g0394221 42.638 326 175 5 265 587 35 351 8.56e-71 233
Msa1095560 MtrunA17_Chr4g0064621 34.578 509 307 10 9 496 140 643 7.36e-70 240
Msa1095560 MtrunA17_Chr4g0046881 73.050 141 35 1 133 273 14 151 2.83e-68 219
Msa1095560 MtrunA17_Chr4g0060241 32.072 502 310 12 10 496 21 506 1.63e-66 228
Msa1095560 MtrunA17_Chr6g0462691 67.606 142 46 0 320 461 1 142 3.89e-61 201
Msa1095560 MtrunA17_Chr6g0462701 57.838 185 52 3 86 268 8 168 4.05e-59 196
Msa1095560 MtrunA17_Chr5g0442171 37.758 339 180 9 168 491 1 323 4.26e-59 201
Msa1095560 MtrunA17_Chr3g0120101 28.517 526 331 13 10 498 27 544 4.69e-59 213
Msa1095560 MtrunA17_Chr7g0223861 70.229 131 39 0 76 206 4 134 4.59e-57 189
Msa1095560 MtrunA17_Chr7g0245541 48.259 201 103 1 416 616 1 200 4.23e-54 183
Msa1095560 MtrunA17_Chr5g0394231 38.326 227 89 4 72 297 5 181 2.30e-42 151
Msa1095560 MtrunA17_Chr6g0481391 59.016 122 47 1 36 157 13 131 1.98e-40 144
Msa1095560 MtrunA17_Chr4g0046871 68.317 101 31 1 334 434 6 105 6.93e-39 139
Msa1095560 MtrunA17_Chr6g0462621 77.465 71 16 0 1 71 1 71 1.20e-32 120
Msa1095560 MtrunA17_Chr7g0223691 79.452 73 13 1 1 71 1 73 3.52e-32 119
Msa1095560 MtrunA17_Chr1g0188591 75.342 73 16 1 1 71 1 73 1.98e-30 114
Msa1095560 MtrunA17_Chr6g0481381 70.270 74 22 0 174 247 1 74 4.61e-30 117
Msa1095560 MtrunA17_Chr6g0481381 36.364 99 62 1 515 612 75 173 3.65e-11 62.8
Msa1095560 MtrunA17_Chr2g0284661 69.880 83 25 0 366 448 61 143 2.11e-29 113
Msa1095560 MtrunA17_Chr2g0284661 50.820 61 28 1 223 281 5 65 1.54e-11 62.8
Msa1095560 MtrunA17_Chr7g0223881 62.667 75 27 1 286 360 9 82 2.15e-26 103
Msa1095560 MtrunA17_Chr7g0221651 53.571 84 39 0 213 296 1 84 2.55e-23 94.4
Msa1095560 MtrunA17_Chr7g0223791 60.976 82 24 2 54 135 18 91 2.01e-22 95.1
Msa1095560 MtrunA17_Chr7g0223791 45.652 92 50 0 482 573 90 181 3.26e-18 82.8
Msa1095560 MtrunA17_Chr2g0299941 80.000 55 11 0 398 452 23 77 2.74e-22 91.7
Msa1095560 MtrunA17_Chr4g0064651 45.652 92 50 0 396 487 29 120 7.16e-22 91.7
Msa1095560 MtrunA17_Chr2g0299891 90.698 43 4 0 313 355 1 43 3.51e-21 87.8
Msa1095560 MtrunA17_Chr6g0462801 66.154 65 17 1 320 379 1 65 7.19e-19 81.3
Msa1095560 MtrunA17_Chr7g0223871 38.889 126 76 1 491 615 7 132 9.44e-19 83.2
Msa1095560 MtrunA17_Chr5g0442161 33.113 151 96 3 9 155 28 177 3.72e-18 82.8
Msa1095560 MtrunA17_Chr2g0299831 64.706 51 10 2 602 648 1 47 1.64e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1095560 AT5G02500.1 91.590 654 47 2 1 649 1 651 0.0 1226
Msa1095560 AT3G12580.1 90.992 655 48 3 1 649 1 650 0.0 1204
Msa1095560 AT3G09440.1 90.337 652 57 3 1 649 1 649 0.0 1204
Msa1095560 AT3G09440.4 90.337 652 57 3 1 649 1 649 0.0 1204
Msa1095560 AT3G09440.2 90.337 652 57 3 1 649 1 649 0.0 1204
Msa1095560 AT3G09440.3 90.337 652 57 3 1 649 1 649 0.0 1204
Msa1095560 AT5G02490.1 89.466 655 61 2 1 649 1 653 0.0 1201
Msa1095560 AT1G56410.1 88.045 619 72 1 1 619 1 617 0.0 1123
Msa1095560 AT1G16030.1 83.359 649 105 3 1 649 1 646 0.0 1112
Msa1095560 AT5G28540.1 65.635 614 205 4 7 618 35 644 0.0 825
Msa1095560 AT5G42020.1 65.267 619 207 5 7 621 35 649 0.0 825
Msa1095560 AT5G42020.3 65.049 618 210 4 7 622 40 653 0.0 824
Msa1095560 AT1G09080.2 63.458 613 219 3 7 618 40 648 0.0 788
Msa1095560 AT1G09080.1 63.458 613 219 3 7 618 50 658 0.0 787
Msa1095560 AT5G02500.2 94.670 394 21 0 1 394 1 394 0.0 783
Msa1095560 AT5G02500.2 75.540 139 26 2 516 649 386 521 2.05e-55 197
Msa1095560 AT5G42020.2 58.147 626 185 11 7 621 35 594 0.0 677
Msa1095560 AT5G09590.1 52.759 580 244 11 10 580 60 618 0.0 556
Msa1095560 AT4G37910.1 52.241 580 247 11 10 580 55 613 0.0 530
Msa1095560 AT4G37910.2 52.241 580 247 11 10 580 55 613 0.0 530
Msa1095560 AT4G24280.1 48.371 614 291 11 10 617 81 674 4.10e-180 528
Msa1095560 AT5G49910.1 47.680 625 299 11 10 625 81 686 9.76e-179 525
Msa1095560 AT2G32120.1 34.961 512 305 9 9 508 30 525 5.26e-90 291
Msa1095560 AT2G32120.2 34.961 512 305 9 9 508 30 525 5.26e-90 291
Msa1095560 AT1G79930.1 35.616 438 266 4 10 434 4 438 1.56e-86 288
Msa1095560 AT1G79930.2 35.616 438 266 4 10 434 4 438 1.87e-86 287
Msa1095560 AT1G79920.3 35.616 438 266 4 10 434 4 438 3.50e-85 283
Msa1095560 AT1G79920.2 35.616 438 266 4 10 434 4 438 3.50e-85 283
Msa1095560 AT1G79920.4 35.616 438 266 4 10 434 4 438 3.50e-85 283
Msa1095560 AT1G79920.1 35.616 438 266 4 10 434 4 438 3.81e-85 282
Msa1095560 AT1G11660.4 26.923 676 405 12 10 619 4 656 1.94e-81 273
Msa1095560 AT1G11660.3 26.923 676 405 12 10 619 4 656 1.94e-81 273
Msa1095560 AT1G11660.1 26.923 676 405 12 10 619 4 656 1.94e-81 273
Msa1095560 AT1G11660.2 26.989 641 379 12 45 619 2 619 2.66e-73 250
Msa1095560 AT4G16660.1 25.941 717 415 18 5 612 22 731 3.32e-61 219
Msa1095560 AT4G16660.2 25.941 717 415 18 5 612 46 755 5.16e-61 219

Find 184 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTAAGTTTGAGCTTTC+TGG 0.055295 7_3:+18501207 Msa1095560:CDS
CATTAAGCAGCTTTCGTTTC+TGG 0.063142 7_3:+18501983 Msa1095560:three_prime_UTR
AATTAGGGTTTCTGAAAATT+AGG 0.137447 7_3:-18499053 None:intergenic
GATATTTGTATTCAGAAAAT+TGG 0.143790 7_3:-18502056 None:intergenic
AAAATCAGTTCAAAGCTTTC+TGG 0.170451 7_3:+18501510 Msa1095560:CDS
AGAAGAGAGGAACGAAAATT+AGG 0.170524 7_3:-18498994 None:intergenic
AGATTAGAGTTTCAGAAATT+AGG 0.186745 7_3:-18499069 None:intergenic
GGTTCAAGATTTGTTGCTTT+TGG 0.218491 7_3:+18501002 Msa1095560:CDS
GAACGTGTTGATCTTTGATT+TGG 0.249451 7_3:+18500420 Msa1095560:CDS
AGAGAAAACTTGCTCCTTCT+TGG 0.262011 7_3:-18501106 None:intergenic
TTTGCTCATTATTACTCTTT+TGG 0.270849 7_3:+18501918 Msa1095560:three_prime_UTR
TCTTAAACTCTTGAACAAAA+TGG 0.275265 7_3:-18500558 None:intergenic
TGCATACGGTCTTGACAAAA+AGG 0.284981 7_3:+18500378 Msa1095560:CDS
CAAGTTGTTATCCTTGGTTC+TGG 0.286343 7_3:-18501184 None:intergenic
TGCAACAATTGCTGAACTTT+GGG 0.288365 7_3:-18500871 None:intergenic
GTATTCAGAAAATTGGAAAA+AGG 0.289004 7_3:-18502049 None:intergenic
GATTAGAGTTTCAGAAATTA+GGG 0.304577 7_3:-18499068 None:intergenic
GGACCAGCGGTAACCTTAAA+AGG 0.305694 7_3:-18500103 None:intergenic
CGTTCGGTTTCCTTGATCAT+TGG 0.309046 7_3:-18499197 None:intergenic
ATTAGGGTTTCTGAAAATTA+GGG 0.317630 7_3:-18499052 None:intergenic
GAAGAGAGGAACGAAAATTA+GGG 0.320365 7_3:-18498993 None:intergenic
TGGTACATCTTTGCAATGAT+TGG 0.332542 7_3:-18501654 None:intergenic
GTTCATGATGTTGTTCTTGT+TGG 0.336461 7_3:+18500832 Msa1095560:CDS
CATACTCGTGTGTTGGAGTA+TGG 0.336614 7_3:+18499149 Msa1095560:CDS
AGAGAGAGAGAAAGAAAGTT+AGG 0.338432 7_3:-18499023 None:intergenic
TTGCAACAATTGCTGAACTT+TGG 0.351846 7_3:-18500872 None:intergenic
GCAGCATCATCATCAACTTC+TGG 0.352793 7_3:-18501696 None:intergenic
CACCCCATTGTCTCAAGGTT+TGG 0.353089 7_3:+18501029 Msa1095560:CDS
CCCGACGAGGCTGTTGCTTA+TGG 0.363421 7_3:+18500934 Msa1095560:CDS
TAGTACCGTTATGTTAAAAC+TGG 0.371679 7_3:+18498881 None:intergenic
CATGTTAAGTTCCTCAAATC+TGG 0.382817 7_3:-18500740 None:intergenic
CGCATAAAATCACTTTAATC+TGG 0.382869 7_3:-18502018 None:intergenic
CATGTAGCAAAATACTAAAA+AGG 0.396064 7_3:-18501835 None:intergenic
AGTAACAACAGCATTCTTAA+TGG 0.400879 7_3:-18500248 None:intergenic
CCATAAGCAACAGCCTCGTC+GGG 0.403242 7_3:-18500934 None:intergenic
CCAAGTGGCAGTGGCGGTGC+TGG 0.403880 7_3:+18501726 Msa1095560:CDS
TGAGATTGATTCTTTGTTTG+AGG 0.412145 7_3:+18500687 Msa1095560:CDS
TCCTGCGATTGGAATAGATC+TGG 0.413134 7_3:+18499120 Msa1095560:CDS
GCAGATGCAAAGAGGTTGAT+TGG 0.415231 7_3:+18500034 Msa1095560:intron
TTCTCTCACCTTCATAGACT+TGG 0.424806 7_3:-18501161 None:intergenic
CGGTGATGCTGCTAAGAATC+AGG 0.426722 7_3:+18499261 Msa1095560:CDS
TTAGTCGACCTCCTCAATCT+TGG 0.427940 7_3:-18501751 None:intergenic
CATGATGTTGTTCTTGTTGG+TGG 0.435475 7_3:+18500835 Msa1095560:CDS
CAACATAAGACGGCGTCGTT+CGG 0.436894 7_3:-18499213 None:intergenic
ACCCAACAAGTTGTTATCCT+TGG 0.437585 7_3:-18501190 None:intergenic
GTTGGAATGGTAGTGTTCCT+TGG 0.441299 7_3:-18501084 None:intergenic
GGTACATCTTTGCAATGATT+GGG 0.445147 7_3:-18501653 None:intergenic
GCAGATTGAGGATGCAATTG+AGG 0.447751 7_3:+18501545 Msa1095560:CDS
AACGTGTTGATCTTTGATTT+GGG 0.450143 7_3:+18500421 Msa1095560:CDS
CTCAATCTCCTAAGTGCTCT+AGG 0.453126 7_3:-18500610 None:intergenic
ACCAAGGATAACAACTTGTT+GGG 0.453253 7_3:+18501189 Msa1095560:CDS
GAGATTGCCGAAGCTTATCT+TGG 0.455022 7_3:+18500220 Msa1095560:CDS
AAAACTTGCTCCTTCTTGGT+TGG 0.457926 7_3:-18501102 None:intergenic
TTCAATGTCATTTATTTGAA+CGG 0.457994 7_3:+18501876 Msa1095560:three_prime_UTR
TGAGGAACACCACGGGGTGC+TGG 0.461639 7_3:-18501237 None:intergenic
AACTCTAATCTTCGAAGCTA+TGG 0.469578 7_3:+18499081 Msa1095560:exon
TGAGAATCGTTGAAGTAAGC+AGG 0.469895 7_3:-18500274 None:intergenic
CATCTTGTCTTCAAACTCAT+CGG 0.472244 7_3:-18501607 None:intergenic
TCTCCAAACCTTGAGACAAT+GGG 0.473525 7_3:-18501032 None:intergenic
TTTAAGGTTACCGCTGGTCC+TGG 0.477023 7_3:+18500106 Msa1095560:CDS
TTGTAGTTAACACCAATCAT+TGG 0.478390 7_3:-18500136 None:intergenic
GGATCTGTTTAGAAAGTGTA+TGG 0.478651 7_3:+18500762 Msa1095560:CDS
ACTGCTGGTGATACCCATCT+TGG 0.479477 7_3:+18500505 Msa1095560:CDS
GTTGGCATCAAGCCATTGAA+TGG 0.480687 7_3:-18501571 None:intergenic
GAGATTGATTCTTTGTTTGA+GGG 0.481259 7_3:+18500688 Msa1095560:CDS
GTGGTAAGAGATGGTTATAT+AGG 0.482419 7_3:-18498947 None:intergenic
AACCAAGGATAACAACTTGT+TGG 0.482428 7_3:+18501188 Msa1095560:CDS
TAGAATGTTCTATGAGAGAG+TGG 0.485472 7_3:-18498907 None:intergenic
GCTCCACCTCCAAGTGGCAG+TGG 0.485530 7_3:+18501717 Msa1095560:CDS
TAGTCGACCTCCTCAATCTT+GGG 0.486263 7_3:-18501750 None:intergenic
AAGAACAAGAAGGATATTAG+TGG 0.486274 7_3:+18500583 Msa1095560:CDS
GAGATCATCGCCAATGATCA+AGG 0.487997 7_3:+18499187 Msa1095560:CDS
TCTGCTGAGGACAAAACTAC+TGG 0.488867 7_3:+18501306 Msa1095560:CDS
CAAAATCTTCACCACCAAGA+TGG 0.490509 7_3:-18500519 None:intergenic
CCAGCACCGCCACTGCCACT+TGG 0.491798 7_3:-18501726 None:intergenic
CAATTGAGGGAGCCATTCAA+TGG 0.492340 7_3:+18501559 Msa1095560:CDS
AATCACCCGTGCCAGATTTG+AGG 0.493096 7_3:+18500729 Msa1095560:CDS
TTGCTCCTTCTTGGTTGGAA+TGG 0.496422 7_3:-18501097 None:intergenic
TTTGAAGTTAAGGCCACTGC+TGG 0.497920 7_3:+18500490 Msa1095560:CDS
ACCATAAGCAACAGCCTCGT+CGG 0.502274 7_3:-18500935 None:intergenic
TTGATCTTTGATTTGGGAGG+TGG 0.505029 7_3:+18500427 Msa1095560:CDS
CCTTCCCTTGTCGTTGGTGA+TGG 0.510836 7_3:-18501346 None:intergenic
TGACAACCTTCCCTTGTCGT+TGG 0.511029 7_3:-18501352 None:intergenic
CCGCCACTGCCACTTGGAGG+TGG 0.511761 7_3:-18501720 None:intergenic
AAAGATGCTGGTGTTATCGC+TGG 0.515111 7_3:+18500310 Msa1095560:CDS
GATGTCACCCCATTGTCTCA+AGG 0.516193 7_3:+18501024 Msa1095560:CDS
GCACCGCCACTGCCACTTGG+AGG 0.517693 7_3:-18501723 None:intergenic
TTCGAAGCTATGGCTGGTAA+AGG 0.517959 7_3:+18499091 Msa1095560:exon
GTGTTTGAGAGATGCTAAGA+TGG 0.518945 7_3:+18500798 Msa1095560:CDS
CAGATTGAGGATGCAATTGA+GGG 0.520000 7_3:+18501546 Msa1095560:CDS
AAAATCTTCACCACCAAGAT+GGG 0.521512 7_3:-18500518 None:intergenic
CTAATCTTCGAAGCTATGGC+TGG 0.521545 7_3:+18499085 Msa1095560:exon
AAAGGTGAAGGTCCTGCGAT+TGG 0.523782 7_3:+18499109 Msa1095560:CDS
TCTCTCAAACACTTCTCTAC+AGG 0.523861 7_3:-18500787 None:intergenic
AAAGGAAGAAATCGAGAAGA+TGG 0.524070 7_3:+18501374 Msa1095560:CDS
ACTGCTGCTGCTATTGCATA+CGG 0.526135 7_3:+18500364 Msa1095560:CDS
TGCAATGATTGGGTTGCAGA+TGG 0.526336 7_3:-18501643 None:intergenic
ACTCATCGGCTTCAGCAAGC+TGG 0.526976 7_3:-18501593 None:intergenic
GGTGACACCAAGATAAGCTT+CGG 0.527286 7_3:-18500227 None:intergenic
AAACAAAGAATCAATCTCAA+TGG 0.529138 7_3:-18500683 None:intergenic
CCCAGATCTATTCCAATCGC+AGG 0.533456 7_3:-18499121 None:intergenic
TCTCAAGGTTTGGAGACTGC+AGG 0.533826 7_3:+18501039 Msa1095560:CDS
GTCTCCAAACCTTGAGACAA+TGG 0.534003 7_3:-18501033 None:intergenic
CGGTGCTGGTCCCAAGATTG+AGG 0.535132 7_3:+18501740 Msa1095560:CDS
AGTTAGGTTTGAGAGAAGAG+AGG 0.539245 7_3:-18499007 None:intergenic
CCACCTCCAAGTGGCAGTGG+CGG 0.540551 7_3:+18501720 Msa1095560:CDS
ATGCAAAGAGGTTGATTGGT+AGG 0.541028 7_3:+18500038 Msa1095560:CDS
GCTGGTGATACCCATCTTGG+TGG 0.543324 7_3:+18500508 Msa1095560:CDS
GGTTGAGGCAAAGAACTCCT+TGG 0.547152 7_3:+18501446 Msa1095560:CDS
ATCTGAGGAAATCTCATCCA+TGG 0.547710 7_3:+18500180 Msa1095560:CDS
ACTGATAGTGAAAGATTGAT+CGG 0.548012 7_3:+18499241 Msa1095560:CDS
GAAATACAAGAGTGAAGATG+AGG 0.548314 7_3:+18501410 Msa1095560:CDS
CGTCAAGCAACAAAAGATGC+TGG 0.551622 7_3:+18500298 Msa1095560:CDS
GTCACTTCTTACTATTGAAG+AGG 0.553420 7_3:+18500462 Msa1095560:CDS
CCTGCGATTGGAATAGATCT+GGG 0.553696 7_3:+18499121 Msa1095560:CDS
TCATGACTGTATTGATTCCA+AGG 0.554072 7_3:+18501067 Msa1095560:CDS
GACCTTCACCAGCTCCACCT+TGG 0.554387 7_3:-18501674 None:intergenic
AGATGAGGAGCACAAGAAGA+AGG 0.556287 7_3:+18501425 Msa1095560:CDS
TGAGTTTGAAGACAAGATGA+AGG 0.559231 7_3:+18501611 Msa1095560:CDS
CAGATTTGAGGAACTTAACA+TGG 0.562908 7_3:+18500741 Msa1095560:CDS
GTTTAAGAGGAAGAACAAGA+AGG 0.567567 7_3:+18500573 Msa1095560:CDS
CACCACTCAATATAGCAGCT+TGG 0.571702 7_3:-18500966 None:intergenic
AAGATGTACCAAGGTGGAGC+TGG 0.573067 7_3:+18501666 Msa1095560:CDS
AGGAGACAAGAAGCAGATTG+AGG 0.576670 7_3:+18501533 Msa1095560:CDS
CCTGGTGAAAAGCCAATGAT+TGG 0.578383 7_3:+18500124 Msa1095560:CDS
ATCAGTTCAAAGCTTTCTGG+AGG 0.579132 7_3:+18501513 Msa1095560:CDS
AAGTTCCTCAAATCTGGCAC+GGG 0.580117 7_3:-18500734 None:intergenic
ATCGGCTTCAGCAAGCTGGT+TGG 0.580621 7_3:-18501589 None:intergenic
CACTACCATTCCAACCAAGA+AGG 0.583263 7_3:+18501092 Msa1095560:CDS
AAATCTGGCACGGGTGATTG+TGG 0.583692 7_3:-18500725 None:intergenic
GCTGCTATATTGAGTGGTGA+AGG 0.584059 7_3:+18500970 Msa1095560:CDS
TATGCAATAGCAGCAGCAGT+TGG 0.585437 7_3:-18500361 None:intergenic
AGAATGTTCTATGAGAGAGT+GGG 0.586378 7_3:-18498906 None:intergenic
TCAATCTCCTAAGTGCTCTA+GGG 0.586832 7_3:-18500609 None:intergenic
CGACAAGGGAAGGTTGTCAA+AGG 0.587169 7_3:+18501356 Msa1095560:CDS
TACCAAGGTGGAGCTGGTGA+AGG 0.588841 7_3:+18501672 Msa1095560:CDS
GGAACAACATACTCGTGTGT+TGG 0.592871 7_3:+18499142 Msa1095560:CDS
TGGTGTTAACTACAAGGGTG+AGG 0.594578 7_3:+18500144 Msa1095560:CDS
TAAGTTCCTCAAATCTGGCA+CGG 0.594794 7_3:-18500735 None:intergenic
GGAGCACAAGAAGAAGGTTG+AGG 0.595453 7_3:+18501431 Msa1095560:CDS
CCATCACCAACGACAAGGGA+AGG 0.596418 7_3:+18501346 Msa1095560:CDS
GTGGTAACCCTAGAGCACTT+AGG 0.597884 7_3:+18500602 Msa1095560:CDS
AGATACGTTTAAGATACCAT+TGG 0.602525 7_3:-18501286 None:intergenic
CTGCTGAGGACAAAACTACT+GGG 0.606275 7_3:+18501307 Msa1095560:CDS
AATGATTGGTGTTAACTACA+AGG 0.609258 7_3:+18500138 Msa1095560:CDS
AGTGATCTGAGGAACACCAC+GGG 0.611264 7_3:-18501244 None:intergenic
TGAGTGATGGTGGTAAGAGA+TGG 0.613991 7_3:-18498956 None:intergenic
GATTACCATCACCAACGACA+AGG 0.614137 7_3:+18501341 Msa1095560:CDS
GCTATGGCTGGTAAAGGTGA+AGG 0.614927 7_3:+18499097 Msa1095560:exon
ACGCATCTTAATCAAAACCA+TGG 0.617180 7_3:-18500197 None:intergenic
TCAGTAAAAGCAACATAAGA+CGG 0.621546 7_3:-18499223 None:intergenic
GAGAATCGTTGAAGTAAGCA+GGG 0.623366 7_3:-18500273 None:intergenic
TTCAGAGTGACATGAAGTTG+TGG 0.623777 7_3:+18500080 Msa1095560:CDS
CAATATAGCAGCTTGGACAG+CGG 0.624841 7_3:-18500959 None:intergenic
TCACTTCTTACTATTGAAGA+GGG 0.626386 7_3:+18500463 Msa1095560:CDS
ACTTATTCAGACAACCAACC+TGG 0.627015 7_3:+18501129 Msa1095560:CDS
GGAACACCACGGGGTGCTGG+AGG 0.627100 7_3:-18501234 None:intergenic
TGCTGGTCCCAAGATTGAGG+AGG 0.633362 7_3:+18501743 Msa1095560:CDS
CTTGGATCAACACACCAGGT+TGG 0.636101 7_3:-18501143 None:intergenic
GTGTTGATCTTTGATTTGGG+AGG 0.636175 7_3:+18500424 Msa1095560:CDS
CAAGGTTTGGAGACTGCAGG+AGG 0.637581 7_3:+18501042 Msa1095560:CDS
GAGTGGTGAAGGAAACGAGA+AGG 0.641352 7_3:+18500981 Msa1095560:CDS
GTTGTATGCATAGTTCTCCA+AGG 0.644051 7_3:-18501463 None:intergenic
GTGTTGATCCAAGTCTATGA+AGG 0.646442 7_3:+18501153 Msa1095560:CDS
GAATGTTCTATGAGAGAGTG+GGG 0.649231 7_3:-18498905 None:intergenic
ATCATTGCAAAGATGTACCA+AGG 0.658059 7_3:+18501657 Msa1095560:CDS
TATCTTAAACGTATCTGCTG+AGG 0.658935 7_3:+18501293 Msa1095560:CDS
TCAAAACAAACAGTGATCTG+AGG 0.659879 7_3:-18501255 None:intergenic
AAGATGGGTATCACCAGCAG+TGG 0.661313 7_3:-18500503 None:intergenic
ATTACCATCACCAACGACAA+GGG 0.662750 7_3:+18501342 Msa1095560:CDS
ATGATTGGTGTTAACTACAA+GGG 0.664773 7_3:+18500139 Msa1095560:CDS
GTCCAAGCTGCTATATTGAG+TGG 0.674115 7_3:+18500964 Msa1095560:CDS
TAGACTTGGATCAACACACC+AGG 0.675512 7_3:-18501147 None:intergenic
GATGCTGCTCCACCTCCAAG+TGG 0.681833 7_3:+18501711 Msa1095560:CDS
GAGTAATAATGAGCAAAACA+CGG 0.685598 7_3:-18501912 None:intergenic
CAAAAGCATCAACCCCGACG+AGG 0.689345 7_3:+18500921 Msa1095560:CDS
CAGTGATCTGAGGAACACCA+CGG 0.695197 7_3:-18501245 None:intergenic
GGAATTCCTCCAGCACCCCG+TGG 0.698378 7_3:+18501228 Msa1095560:CDS
CATAAGCAACAGCCTCGTCG+GGG 0.699592 7_3:-18500933 None:intergenic
CTCCAAACCTTGAGACAATG+GGG 0.701789 7_3:-18501031 None:intergenic
AGGTGAGAGAACCAGAACCA+AGG 0.723497 7_3:+18501173 Msa1095560:CDS
ATTGCAAAGATGTACCAAGG+TGG 0.739279 7_3:+18501660 Msa1095560:CDS
GTGATCTGAGGAACACCACG+GGG 0.758811 7_3:-18501243 None:intergenic
TAATAATGAGCAAAACACGG+TGG 0.789605 7_3:-18501909 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAATTTTTTTAATTTATCT+TGG + chr7_3:18499602-18499621 Msa1095560:intron 10.0%
!!! TATGAATTTTGTAGATTTAA+AGG + chr7_3:18499567-18499586 Msa1095560:intron 15.0%
!! GCTATAATCATATAAAAATT+AGG - chr7_3:18499686-18499705 None:intergenic 15.0%
!! TTTGTGAAAATTACCAAAAA+CGG - chr7_3:18499308-18499327 None:intergenic 20.0%
!!! AGATCTATTTTATTTGTGTT+AGG + chr7_3:18499628-18499647 Msa1095560:intron 20.0%
!!! TTCAATGTCATTTATTTGAA+CGG + chr7_3:18501876-18501895 Msa1095560:three_prime_UTR 20.0%
!!! AGTATCATATTTGCAATTTT+CGG + chr7_3:18501957-18501976 Msa1095560:three_prime_UTR 20.0%
!! GATATTTGTATTCAGAAAAT+TGG - chr7_3:18502059-18502078 None:intergenic 20.0%
!! ATTAGGGTTTCTGAAAATTA+GGG - chr7_3:18499055-18499074 None:intergenic 25.0%
!! AATTAGGGTTTCTGAAAATT+AGG - chr7_3:18499056-18499075 None:intergenic 25.0%
! GATTAGAGTTTCAGAAATTA+GGG - chr7_3:18499071-18499090 None:intergenic 25.0%
! AGATTAGAGTTTCAGAAATT+AGG - chr7_3:18499072-18499091 None:intergenic 25.0%
! AATTATAAAACTACAAGCAC+TGG - chr7_3:18499458-18499477 None:intergenic 25.0%
!!! GATTTAAAGGTGATTTTTTG+TGG + chr7_3:18499580-18499599 Msa1095560:intron 25.0%
! CTTTCATCTCAAAATTTACA+GGG - chr7_3:18499850-18499869 None:intergenic 25.0%
! TCTTTCATCTCAAAATTTAC+AGG - chr7_3:18499851-18499870 None:intergenic 25.0%
!! TTTTTGATGTTGTAATGATG+TGG + chr7_3:18499884-18499903 Msa1095560:intron 25.0%
!! TTTTGATGTTGTAATGATGT+GGG + chr7_3:18499885-18499904 Msa1095560:intron 25.0%
!! TTTTTGTATGTCTGTTTAGA+AGG + chr7_3:18499912-18499931 Msa1095560:intron 25.0%
!! TTTTGTATGTCTGTTTAGAA+GGG + chr7_3:18499913-18499932 Msa1095560:intron 25.0%
!!! TGAAGATTTTGATAACAGAA+TGG + chr7_3:18500531-18500550 Msa1095560:CDS 25.0%
! TCTTAAACTCTTGAACAAAA+TGG - chr7_3:18500561-18500580 None:intergenic 25.0%
!! ATTTTGTTCAAGAGTTTAAG+AGG + chr7_3:18500560-18500579 Msa1095560:CDS 25.0%
! AAACAAAGAATCAATCTCAA+TGG - chr7_3:18500686-18500705 None:intergenic 25.0%
! CATGTAGCAAAATACTAAAA+AGG - chr7_3:18501838-18501857 None:intergenic 25.0%
!! TTTGCTCATTATTACTCTTT+TGG + chr7_3:18501918-18501937 Msa1095560:three_prime_UTR 25.0%
! GTATTCAGAAAATTGGAAAA+AGG - chr7_3:18502052-18502071 None:intergenic 25.0%
TCAGTAAAAGCAACATAAGA+CGG - chr7_3:18499226-18499245 None:intergenic 30.0%
! ACTGATAGTGAAAGATTGAT+CGG + chr7_3:18499241-18499260 Msa1095560:CDS 30.0%
AAAATTACCAAAAACGGTGT+TGG - chr7_3:18499302-18499321 None:intergenic 30.0%
TGTTCTTGTGATTATAGATC+TGG + chr7_3:18499354-18499373 Msa1095560:intron 30.0%
TTTGTATGTCTGTTTAGAAG+GGG + chr7_3:18499914-18499933 Msa1095560:intron 30.0%
! TTGTTGTGATTGTTGTTAAC+TGG + chr7_3:18499996-18500015 Msa1095560:intron 30.0%
! TGTTGTGATTGTTGTTAACT+GGG + chr7_3:18499997-18500016 Msa1095560:intron 30.0%
! AAATTTTTGCAGATGCAAAG+AGG + chr7_3:18500026-18500045 Msa1095560:intron 30.0%
TTGTAGTTAACACCAATCAT+TGG - chr7_3:18500139-18500158 None:intergenic 30.0%
!! AATGATTGGTGTTAACTACA+AGG + chr7_3:18500138-18500157 Msa1095560:CDS 30.0%
!! ATGATTGGTGTTAACTACAA+GGG + chr7_3:18500139-18500158 Msa1095560:CDS 30.0%
AGTAACAACAGCATTCTTAA+TGG - chr7_3:18500251-18500270 None:intergenic 30.0%
! AACGTGTTGATCTTTGATTT+GGG + chr7_3:18500421-18500440 Msa1095560:CDS 30.0%
TCACTTCTTACTATTGAAGA+GGG + chr7_3:18500463-18500482 Msa1095560:CDS 30.0%
!!! AGAGGGTATTTTTGAAGTTA+AGG + chr7_3:18500480-18500499 Msa1095560:CDS 30.0%
AAGAACAAGAAGGATATTAG+TGG + chr7_3:18500583-18500602 Msa1095560:CDS 30.0%
! TGAGATTGATTCTTTGTTTG+AGG + chr7_3:18500687-18500706 Msa1095560:CDS 30.0%
! GAGATTGATTCTTTGTTTGA+GGG + chr7_3:18500688-18500707 Msa1095560:CDS 30.0%
!!! TTGTTGCAAGACTTTTTCAA+TGG + chr7_3:18500886-18500905 Msa1095560:CDS 30.0%
!!! TGTTTTGATATTGATGCCAA+TGG + chr7_3:18501270-18501289 Msa1095560:CDS 30.0%
! AGATACGTTTAAGATACCAT+TGG - chr7_3:18501289-18501308 None:intergenic 30.0%
!! ACTGATTTTCTCGTCTTTAA+TGG - chr7_3:18501499-18501518 None:intergenic 30.0%
AAAATCAGTTCAAAGCTTTC+TGG + chr7_3:18501510-18501529 Msa1095560:CDS 30.0%
!! GTTATGCTTGTGTTTGTTTT+TGG + chr7_3:18501802-18501821 Msa1095560:three_prime_UTR 30.0%
GAGTAATAATGAGCAAAACA+CGG - chr7_3:18501915-18501934 None:intergenic 30.0%
CGCATAAAATCACTTTAATC+TGG - chr7_3:18502021-18502040 None:intergenic 30.0%
AGAATGTTCTATGAGAGAGT+GGG - chr7_3:18498909-18498928 None:intergenic 35.0%
TAGAATGTTCTATGAGAGAG+TGG - chr7_3:18498910-18498929 None:intergenic 35.0%
GTGGTAAGAGATGGTTATAT+AGG - chr7_3:18498950-18498969 None:intergenic 35.0%
!! TTCGTTTTTGTGATGAGTGA+TGG - chr7_3:18498972-18498991 None:intergenic 35.0%
GAAGAGAGGAACGAAAATTA+GGG - chr7_3:18498996-18499015 None:intergenic 35.0%
AGAAGAGAGGAACGAAAATT+AGG - chr7_3:18498997-18499016 None:intergenic 35.0%
AGAGAGAGAGAAAGAAAGTT+AGG - chr7_3:18499026-18499045 None:intergenic 35.0%
AACTCTAATCTTCGAAGCTA+TGG + chr7_3:18499081-18499100 Msa1095560:exon 35.0%
! GTTGTGATTGTTGTTAACTG+GGG + chr7_3:18499998-18500017 Msa1095560:intron 35.0%
ACGCATCTTAATCAAAACCA+TGG - chr7_3:18500200-18500219 None:intergenic 35.0%
! GAACGTGTTGATCTTTGATT+TGG + chr7_3:18500420-18500439 Msa1095560:CDS 35.0%
GTCACTTCTTACTATTGAAG+AGG + chr7_3:18500462-18500481 Msa1095560:CDS 35.0%
AAAATCTTCACCACCAAGAT+GGG - chr7_3:18500521-18500540 None:intergenic 35.0%
GTTTAAGAGGAAGAACAAGA+AGG + chr7_3:18500573-18500592 Msa1095560:CDS 35.0%
CATGTTAAGTTCCTCAAATC+TGG - chr7_3:18500743-18500762 None:intergenic 35.0%
CAGATTTGAGGAACTTAACA+TGG + chr7_3:18500741-18500760 Msa1095560:CDS 35.0%
! GGATCTGTTTAGAAAGTGTA+TGG + chr7_3:18500762-18500781 Msa1095560:CDS 35.0%
GTTCATGATGTTGTTCTTGT+TGG + chr7_3:18500832-18500851 Msa1095560:CDS 35.0%
TGCAACAATTGCTGAACTTT+GGG - chr7_3:18500874-18500893 None:intergenic 35.0%
TTGCAACAATTGCTGAACTT+TGG - chr7_3:18500875-18500894 None:intergenic 35.0%
!!! GCAAGACTTTTTCAATGGTA+AGG + chr7_3:18500891-18500910 Msa1095560:CDS 35.0%
!!! GGTTCAAGATTTGTTGCTTT+TGG + chr7_3:18501002-18501021 Msa1095560:CDS 35.0%
!! TCATGACTGTATTGATTCCA+AGG + chr7_3:18501067-18501086 Msa1095560:CDS 35.0%
AACCAAGGATAACAACTTGT+TGG + chr7_3:18501188-18501207 Msa1095560:CDS 35.0%
! ACCAAGGATAACAACTTGTT+GGG + chr7_3:18501189-18501208 Msa1095560:CDS 35.0%
TCAAAACAAACAGTGATCTG+AGG - chr7_3:18501258-18501277 None:intergenic 35.0%
TATCTTAAACGTATCTGCTG+AGG + chr7_3:18501293-18501312 Msa1095560:CDS 35.0%
AAAGGAAGAAATCGAGAAGA+TGG + chr7_3:18501374-18501393 Msa1095560:CDS 35.0%
GAAATACAAGAGTGAAGATG+AGG + chr7_3:18501410-18501429 Msa1095560:CDS 35.0%
CATCTTGTCTTCAAACTCAT+CGG - chr7_3:18501610-18501629 None:intergenic 35.0%
TGAGTTTGAAGACAAGATGA+AGG + chr7_3:18501611-18501630 Msa1095560:CDS 35.0%
GGTACATCTTTGCAATGATT+GGG - chr7_3:18501656-18501675 None:intergenic 35.0%
TGGTACATCTTTGCAATGAT+TGG - chr7_3:18501657-18501676 None:intergenic 35.0%
ATCATTGCAAAGATGTACCA+AGG + chr7_3:18501657-18501676 Msa1095560:CDS 35.0%
!!! GCTTGTGTTTGTTTTTGGTT+TGG + chr7_3:18501807-18501826 Msa1095560:three_prime_UTR 35.0%
TAATAATGAGCAAAACACGG+TGG - chr7_3:18501912-18501931 None:intergenic 35.0%
!! GGGGTCCAGTTTTAACATAA+CGG - chr7_3:18498889-18498908 None:intergenic 40.0%
GAATGTTCTATGAGAGAGTG+GGG - chr7_3:18498908-18498927 None:intergenic 40.0%
! GTTTTTGTGATGAGTGATGG+TGG - chr7_3:18498969-18498988 None:intergenic 40.0%
AGTTAGGTTTGAGAGAAGAG+AGG - chr7_3:18499010-18499029 None:intergenic 40.0%
! AATCCAACCAACACCGTTTT+TGG + chr7_3:18499292-18499311 Msa1095560:CDS 40.0%
!! TTACCAAAAACGGTGTTGGT+TGG - chr7_3:18499298-18499317 None:intergenic 40.0%
! ATGCAAAGAGGTTGATTGGT+AGG + chr7_3:18500038-18500057 Msa1095560:CDS 40.0%
TTCAGAGTGACATGAAGTTG+TGG + chr7_3:18500080-18500099 Msa1095560:CDS 40.0%
! CATGAAGTTGTGGCCTTTTA+AGG + chr7_3:18500090-18500109 Msa1095560:CDS 40.0%
GGAAAAACTGTTTGCATCTG+AGG + chr7_3:18500165-18500184 Msa1095560:CDS 40.0%
ATCTGAGGAAATCTCATCCA+TGG + chr7_3:18500180-18500199 Msa1095560:CDS 40.0%
GAGAATCGTTGAAGTAAGCA+GGG - chr7_3:18500276-18500295 None:intergenic 40.0%
TGAGAATCGTTGAAGTAAGC+AGG - chr7_3:18500277-18500296 None:intergenic 40.0%
TGCATACGGTCTTGACAAAA+AGG + chr7_3:18500378-18500397 Msa1095560:CDS 40.0%
GACAAAAAGGCAACAAGTGT+TGG + chr7_3:18500391-18500410 Msa1095560:CDS 40.0%
!! GTGTTGATCTTTGATTTGGG+AGG + chr7_3:18500424-18500443 Msa1095560:CDS 40.0%
!! TTGATCTTTGATTTGGGAGG+TGG + chr7_3:18500427-18500446 Msa1095560:CDS 40.0%
CAAAATCTTCACCACCAAGA+TGG - chr7_3:18500522-18500541 None:intergenic 40.0%
TCAATCTCCTAAGTGCTCTA+GGG - chr7_3:18500612-18500631 None:intergenic 40.0%
TAAGTTCCTCAAATCTGGCA+CGG - chr7_3:18500738-18500757 None:intergenic 40.0%
TCTCTCAAACACTTCTCTAC+AGG - chr7_3:18500790-18500809 None:intergenic 40.0%
GTGTTTGAGAGATGCTAAGA+TGG + chr7_3:18500798-18500817 Msa1095560:CDS 40.0%
CATGATGTTGTTCTTGTTGG+TGG + chr7_3:18500835-18500854 Msa1095560:CDS 40.0%
TCTCCAAACCTTGAGACAAT+GGG - chr7_3:18501035-18501054 None:intergenic 40.0%
! AAAACTTGCTCCTTCTTGGT+TGG - chr7_3:18501105-18501124 None:intergenic 40.0%
! AGAGAAAACTTGCTCCTTCT+TGG - chr7_3:18501109-18501128 None:intergenic 40.0%
ACTTATTCAGACAACCAACC+TGG + chr7_3:18501129-18501148 Msa1095560:CDS 40.0%
! GTGTTGATCCAAGTCTATGA+AGG + chr7_3:18501153-18501172 Msa1095560:CDS 40.0%
TTCTCTCACCTTCATAGACT+TGG - chr7_3:18501164-18501183 None:intergenic 40.0%
CAAGTTGTTATCCTTGGTTC+TGG - chr7_3:18501187-18501206 None:intergenic 40.0%
ACCCAACAAGTTGTTATCCT+TGG - chr7_3:18501193-18501212 None:intergenic 40.0%
TTGGGTAAGTTTGAGCTTTC+TGG + chr7_3:18501207-18501226 Msa1095560:CDS 40.0%
ATTACCATCACCAACGACAA+GGG + chr7_3:18501342-18501361 Msa1095560:CDS 40.0%
GTTGTATGCATAGTTCTCCA+AGG - chr7_3:18501466-18501485 None:intergenic 40.0%
ATCAGTTCAAAGCTTTCTGG+AGG + chr7_3:18501513-18501532 Msa1095560:CDS 40.0%
CAGATTGAGGATGCAATTGA+GGG + chr7_3:18501546-18501565 Msa1095560:CDS 40.0%
ATTGCAAAGATGTACCAAGG+TGG + chr7_3:18501660-18501679 Msa1095560:CDS 40.0%
CATTAAGCAGCTTTCGTTTC+TGG + chr7_3:18501983-18502002 Msa1095560:three_prime_UTR 40.0%
!! TGAGTGATGGTGGTAAGAGA+TGG - chr7_3:18498959-18498978 None:intergenic 45.0%
CTAATCTTCGAAGCTATGGC+TGG + chr7_3:18499085-18499104 Msa1095560:exon 45.0%
TTCGAAGCTATGGCTGGTAA+AGG + chr7_3:18499091-18499110 Msa1095560:exon 45.0%
TCCTGCGATTGGAATAGATC+TGG + chr7_3:18499120-18499139 Msa1095560:CDS 45.0%
CCTGCGATTGGAATAGATCT+GGG + chr7_3:18499121-18499140 Msa1095560:CDS 45.0%
GGAACAACATACTCGTGTGT+TGG + chr7_3:18499142-18499161 Msa1095560:CDS 45.0%
CATACTCGTGTGTTGGAGTA+TGG + chr7_3:18499149-18499168 Msa1095560:CDS 45.0%
GAGATCATCGCCAATGATCA+AGG + chr7_3:18499187-18499206 Msa1095560:CDS 45.0%
CGTTCGGTTTCCTTGATCAT+TGG - chr7_3:18499200-18499219 None:intergenic 45.0%
! GCAGATGCAAAGAGGTTGAT+TGG + chr7_3:18500034-18500053 Msa1095560:intron 45.0%
!!! CCAATCATTGGCTTTTCACC+AGG - chr7_3:18500127-18500146 None:intergenic 45.0%
CCTGGTGAAAAGCCAATGAT+TGG + chr7_3:18500124-18500143 Msa1095560:CDS 45.0%
! TGGTGTTAACTACAAGGGTG+AGG + chr7_3:18500144-18500163 Msa1095560:CDS 45.0%
GAGATTGCCGAAGCTTATCT+TGG + chr7_3:18500220-18500239 Msa1095560:CDS 45.0%
GGTGACACCAAGATAAGCTT+CGG - chr7_3:18500230-18500249 None:intergenic 45.0%
CGTCAAGCAACAAAAGATGC+TGG + chr7_3:18500298-18500317 Msa1095560:CDS 45.0%
!! AAAGATGCTGGTGTTATCGC+TGG + chr7_3:18500310-18500329 Msa1095560:CDS 45.0%
TATGCAATAGCAGCAGCAGT+TGG - chr7_3:18500364-18500383 None:intergenic 45.0%
ACTGCTGCTGCTATTGCATA+CGG + chr7_3:18500364-18500383 Msa1095560:CDS 45.0%
! TTTGAAGTTAAGGCCACTGC+TGG + chr7_3:18500490-18500509 Msa1095560:CDS 45.0%
CTCAATCTCCTAAGTGCTCT+AGG - chr7_3:18500613-18500632 None:intergenic 45.0%
AAGTTCCTCAAATCTGGCAC+GGG - chr7_3:18500737-18500756 None:intergenic 45.0%
CAATATAGCAGCTTGGACAG+CGG - chr7_3:18500962-18500981 None:intergenic 45.0%
GTCCAAGCTGCTATATTGAG+TGG + chr7_3:18500964-18500983 Msa1095560:CDS 45.0%
CACCACTCAATATAGCAGCT+TGG - chr7_3:18500969-18500988 None:intergenic 45.0%
GCTGCTATATTGAGTGGTGA+AGG + chr7_3:18500970-18500989 Msa1095560:CDS 45.0%
CTCCAAACCTTGAGACAATG+GGG - chr7_3:18501034-18501053 None:intergenic 45.0%
GTCTCCAAACCTTGAGACAA+TGG - chr7_3:18501036-18501055 None:intergenic 45.0%
! GTTGGAATGGTAGTGTTCCT+TGG - chr7_3:18501087-18501106 None:intergenic 45.0%
CACTACCATTCCAACCAAGA+AGG + chr7_3:18501092-18501111 Msa1095560:CDS 45.0%
TTGCTCCTTCTTGGTTGGAA+TGG - chr7_3:18501100-18501119 None:intergenic 45.0%
TAGACTTGGATCAACACACC+AGG - chr7_3:18501150-18501169 None:intergenic 45.0%
TCTGCTGAGGACAAAACTAC+TGG + chr7_3:18501306-18501325 Msa1095560:CDS 45.0%
CTGCTGAGGACAAAACTACT+GGG + chr7_3:18501307-18501326 Msa1095560:CDS 45.0%
GATTACCATCACCAACGACA+AGG + chr7_3:18501341-18501360 Msa1095560:CDS 45.0%
! AGATGAGGAGCACAAGAAGA+AGG + chr7_3:18501425-18501444 Msa1095560:CDS 45.0%
AGGAGACAAGAAGCAGATTG+AGG + chr7_3:18501533-18501552 Msa1095560:CDS 45.0%
GCAGATTGAGGATGCAATTG+AGG + chr7_3:18501545-18501564 Msa1095560:CDS 45.0%
CAATTGAGGGAGCCATTCAA+TGG + chr7_3:18501559-18501578 Msa1095560:CDS 45.0%
GTTGGCATCAAGCCATTGAA+TGG - chr7_3:18501574-18501593 None:intergenic 45.0%
! TGCAATGATTGGGTTGCAGA+TGG - chr7_3:18501646-18501665 None:intergenic 45.0%
GCAGCATCATCATCAACTTC+TGG - chr7_3:18501699-18501718 None:intergenic 45.0%
TAGTCGACCTCCTCAATCTT+GGG - chr7_3:18501753-18501772 None:intergenic 45.0%
TTAGTCGACCTCCTCAATCT+TGG - chr7_3:18501754-18501773 None:intergenic 45.0%
!! AATTAATCAATAAAAAATTA+GGG - chr7_3:18499331-18499350 None:intergenic 5.0%
!! AAATTAATCAATAAAAAATT+AGG - chr7_3:18499332-18499351 None:intergenic 5.0%
GCTATGGCTGGTAAAGGTGA+AGG + chr7_3:18499097-18499116 Msa1095560:exon 50.0%
AAAGGTGAAGGTCCTGCGAT+TGG + chr7_3:18499109-18499128 Msa1095560:CDS 50.0%
CCCAGATCTATTCCAATCGC+AGG - chr7_3:18499124-18499143 None:intergenic 50.0%
CAACATAAGACGGCGTCGTT+CGG - chr7_3:18499216-18499235 None:intergenic 50.0%
CGGTGATGCTGCTAAGAATC+AGG + chr7_3:18499261-18499280 Msa1095560:CDS 50.0%
!!! TGGCCTTTTAAGGTTACCGC+TGG + chr7_3:18500100-18500119 Msa1095560:CDS 50.0%
GGACCAGCGGTAACCTTAAA+AGG - chr7_3:18500106-18500125 None:intergenic 50.0%
! TTTAAGGTTACCGCTGGTCC+TGG + chr7_3:18500106-18500125 Msa1095560:CDS 50.0%
AAGATGGGTATCACCAGCAG+TGG - chr7_3:18500506-18500525 None:intergenic 50.0%
ACTGCTGGTGATACCCATCT+TGG + chr7_3:18500505-18500524 Msa1095560:CDS 50.0%
! GTGGTAACCCTAGAGCACTT+AGG + chr7_3:18500602-18500621 Msa1095560:CDS 50.0%
AAATCTGGCACGGGTGATTG+TGG - chr7_3:18500728-18500747 None:intergenic 50.0%
AATCACCCGTGCCAGATTTG+AGG + chr7_3:18500729-18500748 Msa1095560:CDS 50.0%
ACCATAAGCAACAGCCTCGT+CGG - chr7_3:18500938-18500957 None:intergenic 50.0%
GAGTGGTGAAGGAAACGAGA+AGG + chr7_3:18500981-18501000 Msa1095560:CDS 50.0%
GATGTCACCCCATTGTCTCA+AGG + chr7_3:18501024-18501043 Msa1095560:CDS 50.0%
CACCCCATTGTCTCAAGGTT+TGG + chr7_3:18501029-18501048 Msa1095560:CDS 50.0%
TCTCAAGGTTTGGAGACTGC+AGG + chr7_3:18501039-18501058 Msa1095560:CDS 50.0%
CTTGGATCAACACACCAGGT+TGG - chr7_3:18501146-18501165 None:intergenic 50.0%
AGGTGAGAGAACCAGAACCA+AGG + chr7_3:18501173-18501192 Msa1095560:CDS 50.0%
AGTGATCTGAGGAACACCAC+GGG - chr7_3:18501247-18501266 None:intergenic 50.0%
CAGTGATCTGAGGAACACCA+CGG - chr7_3:18501248-18501267 None:intergenic 50.0%
TGACAACCTTCCCTTGTCGT+TGG - chr7_3:18501355-18501374 None:intergenic 50.0%
CGACAAGGGAAGGTTGTCAA+AGG + chr7_3:18501356-18501375 Msa1095560:CDS 50.0%
GGAGCACAAGAAGAAGGTTG+AGG + chr7_3:18501431-18501450 Msa1095560:CDS 50.0%
GGTTGAGGCAAAGAACTCCT+TGG + chr7_3:18501446-18501465 Msa1095560:CDS 50.0%
AAGATGTACCAAGGTGGAGC+TGG + chr7_3:18501666-18501685 Msa1095560:CDS 50.0%
! TGGCTTTTCACCAGGACCAG+CGG - chr7_3:18500119-18500138 None:intergenic 55.0%
GCTGGTGATACCCATCTTGG+TGG + chr7_3:18500508-18500527 Msa1095560:CDS 55.0%
!! CAAAAGCATCAACCCCGACG+AGG + chr7_3:18500921-18500940 Msa1095560:CDS 55.0%
CATAAGCAACAGCCTCGTCG+GGG - chr7_3:18500936-18500955 None:intergenic 55.0%
CCATAAGCAACAGCCTCGTC+GGG - chr7_3:18500937-18500956 None:intergenic 55.0%
CAAGGTTTGGAGACTGCAGG+AGG + chr7_3:18501042-18501061 Msa1095560:CDS 55.0%
GTGATCTGAGGAACACCACG+GGG - chr7_3:18501246-18501265 None:intergenic 55.0%
! CCTTCCCTTGTCGTTGGTGA+TGG - chr7_3:18501349-18501368 None:intergenic 55.0%
CCATCACCAACGACAAGGGA+AGG + chr7_3:18501346-18501365 Msa1095560:CDS 55.0%
! ATCGGCTTCAGCAAGCTGGT+TGG - chr7_3:18501592-18501611 None:intergenic 55.0%
!! ACTCATCGGCTTCAGCAAGC+TGG - chr7_3:18501596-18501615 None:intergenic 55.0%
TACCAAGGTGGAGCTGGTGA+AGG + chr7_3:18501672-18501691 Msa1095560:CDS 55.0%
TGCTGGTCCCAAGATTGAGG+AGG + chr7_3:18501743-18501762 Msa1095560:CDS 55.0%
! CCCGACGAGGCTGTTGCTTA+TGG + chr7_3:18500934-18500953 Msa1095560:CDS 60.0%
GACCTTCACCAGCTCCACCT+TGG - chr7_3:18501677-18501696 None:intergenic 60.0%
GATGCTGCTCCACCTCCAAG+TGG + chr7_3:18501711-18501730 Msa1095560:CDS 60.0%
!! CGGTGCTGGTCCCAAGATTG+AGG + chr7_3:18501740-18501759 Msa1095560:CDS 60.0%
GGAATTCCTCCAGCACCCCG+TGG + chr7_3:18501228-18501247 Msa1095560:CDS 65.0%
TGAGGAACACCACGGGGTGC+TGG - chr7_3:18501240-18501259 None:intergenic 65.0%
GCTCCACCTCCAAGTGGCAG+TGG + chr7_3:18501717-18501736 Msa1095560:CDS 65.0%
CCACCTCCAAGTGGCAGTGG+CGG + chr7_3:18501720-18501739 Msa1095560:CDS 65.0%
!! GGAACACCACGGGGTGCTGG+AGG - chr7_3:18501237-18501256 None:intergenic 70.0%
! CCGCCACTGCCACTTGGAGG+TGG - chr7_3:18501723-18501742 None:intergenic 70.0%
! GCACCGCCACTGCCACTTGG+AGG - chr7_3:18501726-18501745 None:intergenic 70.0%
CCAGCACCGCCACTGCCACT+TGG - chr7_3:18501729-18501748 None:intergenic 70.0%
CCAAGTGGCAGTGGCGGTGC+TGG + chr7_3:18501726-18501745 Msa1095560:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 18498886 18502082 18498886 ID=Msa1095560;Name=Msa1095560
chr7_3 mRNA 18498886 18502082 18498886 ID=Msa1095560-mRNA-1;Parent=Msa1095560;Name=Msa1095560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=214|1|1|1|1|1|2|309|649
chr7_3 exon 18498886 18499313 18498886 ID=Msa1095560-mRNA-1:exon:4000;Parent=Msa1095560-mRNA-1
chr7_3 exon 18500038 18502082 18500038 ID=Msa1095560-mRNA-1:exon:4001;Parent=Msa1095560-mRNA-1
chr7_3 five_prime_UTR 18498886 18499099 18498886 ID=Msa1095560-mRNA-1:five_prime_utr;Parent=Msa1095560-mRNA-1
chr7_3 CDS 18499100 18499313 18499100 ID=Msa1095560-mRNA-1:cds;Parent=Msa1095560-mRNA-1
chr7_3 CDS 18500038 18501773 18500038 ID=Msa1095560-mRNA-1:cds;Parent=Msa1095560-mRNA-1
chr7_3 three_prime_UTR 18501774 18502082 18501774 ID=Msa1095560-mRNA-1:three_prime_utr;Parent=Msa1095560-mRNA-1
Gene Sequence

>Msa1095560

ATGGCTGGTAAAGGTGAAGGTCCTGCGATTGGAATAGATCTGGGAACAACATACTCGTGTGTTGGAGTATGGCAACACGATCGTGTTGAGATCATCGCCAATGATCAAGGAAACCGAACGACGCCGTCTTATGTTGCTTTTACTGATAGTGAAAGATTGATCGGTGATGCTGCTAAGAATCAGGTCGCGATGAATCCAACCAACACCGTTTTTGATGCAAAGAGGTTGATTGGTAGGAGAATTTCTGATGCTTCTGTTCAGAGTGACATGAAGTTGTGGCCTTTTAAGGTTACCGCTGGTCCTGGTGAAAAGCCAATGATTGGTGTTAACTACAAGGGTGAGGAAAAACTGTTTGCATCTGAGGAAATCTCATCCATGGTTTTGATTAAGATGCGTGAGATTGCCGAAGCTTATCTTGGTGTCACCATTAAGAATGCTGTTGTTACTGTCCCTGCTTACTTCAACGATTCTCAGCGTCAAGCAACAAAAGATGCTGGTGTTATCGCTGGTTTGAATGTTTTGAGAATTATTAATGAGCCAACTGCTGCTGCTATTGCATACGGTCTTGACAAAAAGGCAACAAGTGTTGGTGAGAAGAACGTGTTGATCTTTGATTTGGGAGGTGGTACTTTTGATGTGTCACTTCTTACTATTGAAGAGGGTATTTTTGAAGTTAAGGCCACTGCTGGTGATACCCATCTTGGTGGTGAAGATTTTGATAACAGAATGGTTAACCATTTTGTTCAAGAGTTTAAGAGGAAGAACAAGAAGGATATTAGTGGTAACCCTAGAGCACTTAGGAGATTGAGAACTGCATGTGAGAGAGCGAAGAGAACTCTCTCATCTACTGCACAAACTACCATTGAGATTGATTCTTTGTTTGAGGGTGTTGATTTTTACACCACAATCACCCGTGCCAGATTTGAGGAACTTAACATGGATCTGTTTAGAAAGTGTATGGAGCCTGTAGAGAAGTGTTTGAGAGATGCTAAGATGGACAAAAGCACTGTTCATGATGTTGTTCTTGTTGGTGGTTCAACTAGAATTCCCAAAGTTCAGCAATTGTTGCAAGACTTTTTCAATGGTAAGGAGCTTTGCAAAAGCATCAACCCCGACGAGGCTGTTGCTTATGGTGCCGCTGTCCAAGCTGCTATATTGAGTGGTGAAGGAAACGAGAAGGTTCAAGATTTGTTGCTTTTGGATGTCACCCCATTGTCTCAAGGTTTGGAGACTGCAGGAGGTGTCATGACTGTATTGATTCCAAGGAACACTACCATTCCAACCAAGAAGGAGCAAGTTTTCTCTACTTATTCAGACAACCAACCTGGTGTGTTGATCCAAGTCTATGAAGGTGAGAGAACCAGAACCAAGGATAACAACTTGTTGGGTAAGTTTGAGCTTTCTGGAATTCCTCCAGCACCCCGTGGTGTTCCTCAGATCACTGTTTGTTTTGATATTGATGCCAATGGTATCTTAAACGTATCTGCTGAGGACAAAACTACTGGGCAGAAGAACAAGATTACCATCACCAACGACAAGGGAAGGTTGTCAAAGGAAGAAATCGAGAAGATGGTTCAAGAAGCAGAGAAATACAAGAGTGAAGATGAGGAGCACAAGAAGAAGGTTGAGGCAAAGAACTCCTTGGAGAACTATGCATACAACATGAGAAACACCATTAAAGACGAGAAAATCAGTTCAAAGCTTTCTGGAGGAGACAAGAAGCAGATTGAGGATGCAATTGAGGGAGCCATTCAATGGCTTGATGCCAACCAGCTTGCTGAAGCCGATGAGTTTGAAGACAAGATGAAGGAGCTTGAAACCATCTGCAACCCAATCATTGCAAAGATGTACCAAGGTGGAGCTGGTGAAGGTCCAGAAGTTGATGATGATGCTGCTCCACCTCCAAGTGGCAGTGGCGGTGCTGGTCCCAAGATTGAGGAGGTCGACTAA
Protein sequence

>Msa1095560

MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPTNTVFDAKRLIGRRISDASVQSDMKLWPFKVTAGPGEKPMIGVNYKGEEKLFASEEISSMVLIKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGVDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSQGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNSLENYAYNMRNTIKDEKISSKLSGGDKKQIEDAIEGAIQWLDANQLAEADEFEDKMKELETICNPIIAKMYQGGAGEGPEVDDDAAPPPSGSGGAGPKIEEVD*