AlfalfaGEDB | Msa1095670

M. sativa cultivar zhongmu-4 / Msa1095670

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1095670	XP_003622126.2	61.010	495	133	6	99	542	41	526	0.0	584

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1095670	sp\|Q9SZL8\|FRS5_ARATH	28.133	391	231	7	129	472	67	454	1.05e-48	186

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1095670	A0A2Z6NML7	48.807	545	207	6	90	587	15	534	1.86e-173	516

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TFs/TRs:

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Gene ID	Type	Classification
Msa1095670	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1011610	Msa1095670	0.800445	1.436727e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1095670	MtrunA17_Chr1g0203051	42.050	478	198	3	112	511	54	530	1.06e-121	376
Msa1095670	MtrunA17_Chr2g0287651	32.104	461	228	4	132	510	70	527	9.21e-80	271
Msa1095670	MtrunA17_Chr1g0202341	30.591	389	221	6	136	478	50	435	1.15e-55	201
Msa1095670	MtrunA17_Chr5g0448761	28.272	382	224	6	141	472	64	445	3.60e-51	190
Msa1095670	MtrunA17_Chr2g0287061	31.476	359	197	10	142	473	188	524	1.96e-48	182
Msa1095670	MtrunA17_Chr5g0431001	26.728	434	246	8	113	477	25	455	1.03e-43	164
Msa1095670	MtrunA17_Chr1g0198761	27.990	393	221	9	143	477	53	441	1.23e-43	167
Msa1095670	MtrunA17_Chr6g0458391	26.575	365	232	8	143	476	231	590	4.20e-43	166
Msa1095670	MtrunA17_Chr6g0458391	28.800	125	84	3	141	264	95	215	2.32e-11	67.0
Msa1095670	MtrunA17_Chr1g0203721	27.676	383	221	8	143	474	69	446	3.44e-42	164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1095670	AT4G38180.1	28.133	391	231	7	129	472	67	454	1.07e-49	186
Msa1095670	AT3G06250.2	28.650	363	223	9	135	478	188	533	9.76e-49	183
Msa1095670	AT3G06250.1	28.650	363	223	9	135	478	188	533	9.76e-49	183
Msa1095670	AT3G06250.3	28.650	363	223	9	135	478	188	533	9.76e-49	183
Msa1095670	AT5G18960.2	28.297	364	224	9	135	477	209	556	3.29e-46	176
Msa1095670	AT5G18960.1	28.297	364	224	9	135	477	209	556	3.29e-46	176
Msa1095670	AT1G10240.2	26.364	440	256	12	94	477	14	441	8.61e-40	155
Msa1095670	AT1G10240.1	26.364	440	256	12	94	477	14	441	8.61e-40	155
Msa1095670	AT3G22170.2	26.509	381	236	12	136	477	69	444	1.02e-36	147
Msa1095670	AT3G22170.1	26.509	381	236	12	136	477	69	444	1.02e-36	147

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Find 149 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCATCTTGATAGTTTCCA+CGG	0.556190	7_3:-18700828	None:intergenic
AACTGTCAACACAGATTGCT+TGG	0.429184	7_3:-18698175	None:intergenic
AAGATTCAAATCGATAACTG+TGG	0.673943	7_3:+18699533	Msa1095670:CDS
AAGGATTTAGGTATGACAGA+GGG	0.653871	7_3:+18699315	Msa1095670:CDS
AATAACGTGACCTTTGCGGA+CGG	0.654807	7_3:-18699243	None:intergenic
AATGAAATGGTAATTGAGTT+TGG	0.362148	7_3:+18700216	Msa1095670:CDS
AATGGTAATTGAGTTTGGCC+TGG	0.541870	7_3:+18700221	Msa1095670:CDS
ACACCAGAAAACACGTCAAA+AGG	0.466803	7_3:-18699880	None:intergenic
ACACTACTGGGATTCACATT+TGG	0.373928	7_3:+18700852	Msa1095670:CDS
ACACTGTTGATGCTGGTGGT+AGG	0.648174	7_3:+18699752	Msa1095670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGCTGAATTAGATCAAAAT+TGG	+	chr7_3:18698308-18698327	Msa1095670:intron	30.0%
TCAATGTAACTCATGATGAT+GGG	+	chr7_3:18698970-18698989	Msa1095670:CDS	30.0%
TGTAGACAATATTGTGAAGA+TGG	+	chr7_3:18699118-18699137	Msa1095670:CDS	30.0%
TGTGTAATCTAGAAGGATTT+AGG	+	chr7_3:18699303-18699322	Msa1095670:CDS	30.0%
TTGATATAAATTCAGGTCGT+TGG	+	chr7_3:18699414-18699433	Msa1095670:CDS	30.0%
AAGATTCAAATCGATAACTG+TGG	+	chr7_3:18699533-18699552	Msa1095670:CDS	30.0%
GTAGGTTACAAAACTTATTC+TGG	+	chr7_3:18699770-18699789	Msa1095670:CDS	30.0%
CCAATTTCTGTAATAACAGA+CGG	+	chr7_3:18700015-18700034	Msa1095670:CDS	30.0%
TTATCATAGATTATGTGCGT+GGG	+	chr7_3:18700083-18700102	Msa1095670:CDS	30.0%
TCAATGAGATGTTTGAGAAA+AGG	+	chr7_3:18700259-18700278	Msa1095670:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	18698125	18701260	18698125	ID=Msa1095670;Name=Msa1095670
chr7_3	mRNA	18698125	18701260	18698125	ID=Msa1095670-mRNA-1;Parent=Msa1095670;Name=Msa1095670-mRNA-1;_AED=0.40;_eAED=0.41;_QI=0\|0\|0\|0.37\|1\|1\|8\|0\|665
chr7_3	exon	18698125	18698210	18698125	ID=Msa1095670-mRNA-1:exon:4061;Parent=Msa1095670-mRNA-1
chr7_3	exon	18698460	18698508	18698460	ID=Msa1095670-mRNA-1:exon:4062;Parent=Msa1095670-mRNA-1
chr7_3	exon	18698652	18698689	18698652	ID=Msa1095670-mRNA-1:exon:4063;Parent=Msa1095670-mRNA-1
chr7_3	exon	18698929	18699612	18698929	ID=Msa1095670-mRNA-1:exon:4064;Parent=Msa1095670-mRNA-1
chr7_3	exon	18699732	18700302	18699732	ID=Msa1095670-mRNA-1:exon:4065;Parent=Msa1095670-mRNA-1
chr7_3	exon	18700403	18700506	18700403	ID=Msa1095670-mRNA-1:exon:4066;Parent=Msa1095670-mRNA-1
chr7_3	exon	18700708	18700936	18700708	ID=Msa1095670-mRNA-1:exon:4067;Parent=Msa1095670-mRNA-1
chr7_3	exon	18701024	18701260	18701024	ID=Msa1095670-mRNA-1:exon:4068;Parent=Msa1095670-mRNA-1
chr7_3	CDS	18698125	18698210	18698125	ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3	CDS	18698460	18698508	18698460	ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3	CDS	18698652	18698689	18698652	ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3	CDS	18698929	18699612	18698929	ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3	CDS	18699732	18700302	18699732	ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3	CDS	18700403	18700506	18700403	ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3	CDS	18700708	18700936	18700708	ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3	CDS	18701024	18701260	18701024	ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1

Gene Sequence

>Msa1095670

ATGAGTTATGATAATAATAGATGCATGGGAGTGGTGGATGTTGAGGGTTTCCAAGCAATCTGTGTTGACAGTTTGGGAGTGCTTTGCTTGCTTACCCAACCTATGGAGTTGGAATCCCCAGGAGTTTTTGAGGAGTGTGAACCTGTAGTGGTGGGGGCTAGTGTGATGCGTGGATTGATGGATTTGAATATAGACAACATTGATGGTGAAGGTGTCAATGTAACTCATGATGATGGGGAGTGTTCTGATAGCGATGCAAACGACAATGACACTGCTAGTGACGATTTGGATGAAAATTCAAACAGCTTCAATGAATCAACACACTCAGATCAAAATCCAAACGAATCTTACTTAATTGATGATGTAGACAATATTGTGAAGATGGATATGTTTAACTTGAAGAATGAAGATGTTTCGAAGTTGCAATTTCGTAATCTTGAAGTTGCGTACTCATTTTATTGTTGGTTTGCAAAGATTAATGGTTTTGCCGTCCGCAAAGGTCACGTTATTAAAGATAAGAATGGATATGTTGTTCAACAAACTTTTGTGTGTAATCTAGAAGGATTTAGGTATGACAGAGGGTTAACATCAGAGAAACGCAAGCGTGGTCCAAGACACGAAACCAGGTGTGGTTGTGGCGTGAAATTTCGAGTGCATATTGATATAAATTCAGGTCGTTGGTACATCACACTTTTCAGTTATGAGCACAACCATGATATGTTAACAGAGAAGGATTGCGGGTTGTTGGCTGCTCACAGGAAACTGACAAAGTCAGATAAGATTCAAATCGATAACTGTGGCAATGCTGGAATAAAGGTTACTCAAATGATTGGTGCATTTGCAAATGCTGCTGGTGGTCCTTTGATGTTTGTTGCGCACACTGTTGATGCTGGTGGTAGGTTACAAAACTTATTCTGGAGCGATGGTGAAAGTCAAAAGAATTATGAAATCTTTGGCGATGTGCTTGCCTTTGATGCCACCTACAAGAAACATAAGTACAAATGTCCTTTTGACGTGTTTTCTGGTGTTAATCACCATAACCAAACAATCATTTTTGCTACTTCCATAGTCTCTAATGAGGTTGAAGGGACATATGTTTGGTTGTTGGAACAGTTTTTGGCTGCAATGAAAGGCAAGGCACCAATTTCTGTAATAACAGACGGTGATTTAGCTATAAGGAATGCCATCAAGCAAGTGTTTCCCAAAAGTTATCATAGATTATGTGCGTGGGATCTACTTCGCAATGCAATGTCCAACATTGGTATTGCAGATTTCACTCCTTATTTAAAAAAAAAATGTATGTTTGGTGATCACGAAGTATGGAAATTTGAAAAACTATTGAATGAAATGGTAATTGAGTTTGGCCTGGAAGAAAACAGTTGGATCAATGAGATGTTTGAGAAAAGGAATATGTGGGCAACATCTCATTTCCACCAGTGTGTAGAATATTTTCGATTTAGAGAGGTTCAAGCTGATCACCAATCTCAATATGGGAAGGCAGTGTTGCAGACCAGTCTAAGGTCGCTCGAGAGAATGGAATCTATTGGGATCCCTTGTGAGCATATTGTGGCGGTGCTAGTATATCTTGATTTTGCTGATTTCCCTAAGTATCTTGTGCTGAATCGTTGGTCACAATTTGCAAAGGAGTCTATCCGTGGAAACTATCAAGATGGTTCACACTACTGGGATTCACATTTGGTTGCGAGACACGCCAATTTGGTGAATCTTAGTAAGGAAGTTTCTGATTTGGCATATCAGGATAATTCACATGTTCCAGTGGACATGGAAAACATACTCAACCCTGTATGTTCAAGAAGCACGGGATGTGGCCCCAGCGGTAATAGTACACCTAGAAGGCATAGGCGGATACATACATGTGGTAGATGTGGTGCAATCGGTCACAACAGAAGATGTTGTCCTACCTTGACTGAAGTAGGAGACATGGGTGCGGGTGGTTCTCTTCAATCACGATTTGTACGTTTAAGCGAGGATGTTTAA

Protein sequence

>Msa1095670

MSYDNNRCMGVVDVEGFQAICVDSLGVLCLLTQPMELESPGVFEECEPVVVGASVMRGLMDLNIDNIDGEGVNVTHDDGECSDSDANDNDTASDDLDENSNSFNESTHSDQNPNESYLIDDVDNIVKMDMFNLKNEDVSKLQFRNLEVAYSFYCWFAKINGFAVRKGHVIKDKNGYVVQQTFVCNLEGFRYDRGLTSEKRKRGPRHETRCGCGVKFRVHIDINSGRWYITLFSYEHNHDMLTEKDCGLLAAHRKLTKSDKIQIDNCGNAGIKVTQMIGAFANAAGGPLMFVAHTVDAGGRLQNLFWSDGESQKNYEIFGDVLAFDATYKKHKYKCPFDVFSGVNHHNQTIIFATSIVSNEVEGTYVWLLEQFLAAMKGKAPISVITDGDLAIRNAIKQVFPKSYHRLCAWDLLRNAMSNIGIADFTPYLKKKCMFGDHEVWKFEKLLNEMVIEFGLEENSWINEMFEKRNMWATSHFHQCVEYFRFREVQADHQSQYGKAVLQTSLRSLERMESIGIPCEHIVAVLVYLDFADFPKYLVLNRWSQFAKESIRGNYQDGSHYWDSHLVARHANLVNLSKEVSDLAYQDNSHVPVDMENILNPVCSRSTGCGPSGNSTPRRHRRIHTCGRCGAIGHNRRCCPTLTEVGDMGAGGSLQSRFVRLSEDV*