AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1095670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1095670 MtrunA17_Chr1g0203051 42.050 478 198 3 112 511 54 530 1.06e-121 376
Msa1095670 MtrunA17_Chr2g0287651 32.104 461 228 4 132 510 70 527 9.21e-80 271
Msa1095670 MtrunA17_Chr1g0202341 30.591 389 221 6 136 478 50 435 1.15e-55 201
Msa1095670 MtrunA17_Chr5g0448761 28.272 382 224 6 141 472 64 445 3.60e-51 190
Msa1095670 MtrunA17_Chr2g0287061 31.476 359 197 10 142 473 188 524 1.96e-48 182
Msa1095670 MtrunA17_Chr5g0431001 26.728 434 246 8 113 477 25 455 1.03e-43 164
Msa1095670 MtrunA17_Chr1g0198761 27.990 393 221 9 143 477 53 441 1.23e-43 167
Msa1095670 MtrunA17_Chr6g0458391 26.575 365 232 8 143 476 231 590 4.20e-43 166
Msa1095670 MtrunA17_Chr6g0458391 28.800 125 84 3 141 264 95 215 2.32e-11 67.0
Msa1095670 MtrunA17_Chr1g0203721 27.676 383 221 8 143 474 69 446 3.44e-42 164
Msa1095670 MtrunA17_Chr2g0324011 26.824 425 233 7 141 515 14 410 1.73e-41 159
Msa1095670 MtrunA17_Chr8g0363841 26.634 413 231 7 149 514 29 416 5.31e-40 156
Msa1095670 MtrunA17_Chr3g0082121 26.190 378 227 8 140 473 46 415 3.03e-39 154
Msa1095670 MtrunA17_Chr2g0276841 25.631 515 283 18 143 565 76 582 7.49e-39 153
Msa1095670 MtrunA17_Chr2g0294841 27.249 389 221 8 142 473 50 433 1.01e-37 150
Msa1095670 MtrunA17_Chr3g0080351 28.346 381 224 14 136 475 75 447 1.24e-36 147
Msa1095670 MtrunA17_Chr5g0441581 26.440 382 218 10 141 475 36 401 1.27e-36 146
Msa1095670 MtrunA17_Chr1g0171741 37.879 198 119 3 70 265 65 260 1.66e-35 135
Msa1095670 MtrunA17_Chr5g0448511 34.807 181 111 3 296 472 40 217 2.66e-35 140
Msa1095670 MtrunA17_Chr2g0296781 26.882 372 216 7 152 476 12 374 4.78e-35 141
Msa1095670 MtrunA17_Chr2g0291591 23.427 461 263 11 77 473 4 438 6.40e-35 140
Msa1095670 MtrunA17_Chr1g0207551 27.665 394 220 9 136 476 33 414 7.18e-35 141
Msa1095670 MtrunA17_Chr2g0329031 24.611 386 245 8 130 475 7 386 8.00e-35 141
Msa1095670 MtrunA17_Chr2g0290391 25.336 446 245 9 94 476 27 447 4.10e-33 135
Msa1095670 MtrunA17_Chr6g0477261 31.679 262 161 6 222 476 13 263 9.12e-33 134
Msa1095670 MtrunA17_Chr5g0440451 30.303 198 134 2 284 477 234 431 3.21e-32 133
Msa1095670 MtrunA17_Chr3g0118611 30.769 195 131 2 287 477 134 328 5.42e-32 132
Msa1095670 MtrunA17_Chr1g0196541 26.720 378 225 8 141 473 1 371 1.28e-31 131
Msa1095670 MtrunA17_Chr1g0164591 24.585 301 180 3 218 476 3 298 2.85e-31 124
Msa1095670 MtrunA17_Chr8g0389811 41.221 131 77 0 114 244 61 191 3.18e-31 121
Msa1095670 MtrunA17_Chr2g0291581 25.000 376 232 8 141 477 75 439 1.64e-29 124
Msa1095670 MtrunA17_Chr2g0331371 36.517 178 108 2 86 261 2 176 5.82e-26 106
Msa1095670 MtrunA17_Chr2g0308841 42.222 135 39 2 427 523 2 135 1.47e-24 103
Msa1095670 MtrunA17_Chr6g0473421 39.535 129 76 1 86 212 2 130 1.15e-23 97.8
Msa1095670 MtrunA17_Chr7g0258861 24.913 289 171 4 141 385 14 300 2.95e-22 98.2
Msa1095670 MtrunA17_Chr1g0172931 39.362 94 57 0 119 212 58 151 3.90e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1095670 AT4G38180.1 28.133 391 231 7 129 472 67 454 1.07e-49 186
Msa1095670 AT3G06250.2 28.650 363 223 9 135 478 188 533 9.76e-49 183
Msa1095670 AT3G06250.1 28.650 363 223 9 135 478 188 533 9.76e-49 183
Msa1095670 AT3G06250.3 28.650 363 223 9 135 478 188 533 9.76e-49 183
Msa1095670 AT5G18960.2 28.297 364 224 9 135 477 209 556 3.29e-46 176
Msa1095670 AT5G18960.1 28.297 364 224 9 135 477 209 556 3.29e-46 176
Msa1095670 AT1G10240.2 26.364 440 256 12 94 477 14 441 8.61e-40 155
Msa1095670 AT1G10240.1 26.364 440 256 12 94 477 14 441 8.61e-40 155
Msa1095670 AT3G22170.2 26.509 381 236 12 136 477 69 444 1.02e-36 147
Msa1095670 AT3G22170.1 26.509 381 236 12 136 477 69 444 1.02e-36 147
Msa1095670 AT2G32250.5 26.629 353 230 8 141 478 42 380 4.60e-34 139
Msa1095670 AT2G32250.2 26.629 353 230 8 141 478 42 380 4.87e-34 139
Msa1095670 AT2G32250.4 26.629 353 230 8 141 478 42 380 4.87e-34 139
Msa1095670 AT2G32250.6 26.629 353 230 8 141 478 42 380 4.98e-34 139
Msa1095670 AT2G32250.1 26.629 353 230 8 141 478 42 380 4.98e-34 139
Msa1095670 AT2G32250.3 26.629 353 230 8 141 478 42 380 4.98e-34 139
Msa1095670 AT2G32250.7 26.629 353 230 8 141 478 1 339 6.00e-34 139
Msa1095670 AT2G32250.8 26.629 353 230 8 141 478 1 339 6.35e-34 139
Msa1095670 AT1G52520.1 26.842 380 222 10 141 477 89 455 9.94e-34 138
Msa1095670 AT2G27110.2 25.337 371 226 8 141 477 53 406 1.05e-33 138
Msa1095670 AT2G27110.1 25.337 371 226 8 141 477 53 406 1.05e-33 138
Msa1095670 AT4G19990.3 27.731 357 230 10 142 473 26 379 1.29e-33 137
Msa1095670 AT4G19990.4 27.731 357 230 10 142 473 26 379 1.29e-33 137
Msa1095670 AT4G19990.6 27.731 357 230 10 142 473 26 379 1.29e-33 137
Msa1095670 AT4G19990.2 27.731 357 230 10 142 473 26 379 1.29e-33 137
Msa1095670 AT4G19990.7 27.731 357 230 10 142 473 40 393 1.40e-33 137
Msa1095670 AT4G19990.5 27.731 357 230 10 142 473 26 379 1.52e-33 137
Msa1095670 AT1G76320.3 25.798 376 232 8 141 475 1 370 4.54e-33 135
Msa1095670 AT4G15090.1 25.862 406 221 8 132 475 46 433 5.29e-33 136
Msa1095670 AT4G15090.5 25.862 406 221 8 132 475 46 433 5.29e-33 136
Msa1095670 AT4G15090.3 25.862 406 221 8 132 475 46 433 5.29e-33 136
Msa1095670 AT4G15090.2 25.862 406 221 8 132 475 46 433 5.29e-33 136
Msa1095670 AT4G15090.4 25.862 406 221 8 132 475 46 433 5.29e-33 136
Msa1095670 AT1G76320.2 25.798 376 232 8 141 475 1 370 5.88e-33 135
Msa1095670 AT1G76320.1 25.798 376 232 8 141 475 1 370 6.60e-33 135
Msa1095670 AT1G76320.4 25.798 376 232 8 141 475 1 370 6.60e-33 135
Msa1095670 AT2G27110.3 30.808 198 133 2 284 477 64 261 2.51e-32 133
Msa1095670 AT5G28530.3 24.219 384 228 7 149 472 67 447 2.56e-32 133
Msa1095670 AT5G28530.2 24.219 384 228 7 149 472 67 447 2.56e-32 133
Msa1095670 AT5G28530.1 24.219 384 228 7 149 472 67 447 2.68e-32 133
Msa1095670 AT1G80010.1 35.165 182 115 1 299 477 299 480 2.79e-32 133
Msa1095670 AT4G19990.1 27.864 323 206 9 175 473 3 322 4.30e-31 129
Msa1095670 AT4G38170.1 29.143 175 119 3 303 472 45 219 2.47e-24 108
Msa1095670 AT5G28530.4 24.629 337 222 10 149 472 67 384 2.76e-22 102
Msa1095670 AT5G28530.5 24.629 337 222 10 149 472 67 384 3.00e-22 102

Find 149 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGGTTTGCAAAGATTAA+TGG 0.209681 7_3:+18699215 Msa1095670:CDS
CCGTCTGTTATTACAGAAAT+TGG 0.213764 7_3:-18700015 None:intergenic
ACATAATCTATGATAACTTT+TGG 0.235355 7_3:-18700076 None:intergenic
TGTATCCGCCTATGCCTTCT+AGG 0.251485 7_3:-18701111 None:intergenic
CTTACTAAGATTCACCAAAT+TGG 0.273526 7_3:-18700887 None:intergenic
AGTTTCTGATTTGGCATATC+AGG 0.280882 7_3:+18700912 Msa1095670:CDS
TGTCTTAGAATGGAATCTAT+TGG 0.286177 7_3:+18700700 Msa1095670:intron
GTAGGTTACAAAACTTATTC+TGG 0.286655 7_3:+18699770 Msa1095670:CDS
GCTGATCACCAATCTCAATA+TGG 0.287052 7_3:+18700445 Msa1095670:CDS
CAAAAGAATTATGAAATCTT+TGG 0.288290 7_3:+18699808 Msa1095670:CDS
TTTGTACTTATGTTTCTTGT+AGG 0.288955 7_3:-18699854 None:intergenic
GGTTGCGAGACACGCCAATT+TGG 0.319259 7_3:+18700873 Msa1095670:CDS
CTGTGGCAATGCTGGAATAA+AGG 0.326606 7_3:+18699550 Msa1095670:CDS
AGCAATCTGTGTTGACAGTT+TGG 0.326777 7_3:+18698178 Msa1095670:CDS
GTCTTAGAATGGAATCTATT+GGG 0.342081 7_3:+18700701 Msa1095670:intron
TTCAACCTCATTAGAGACTA+TGG 0.344476 7_3:-18699938 None:intergenic
CCACACCTGGTTTCGTGTCT+TGG 0.351926 7_3:-18699365 None:intergenic
TTTGGGAAACACTTGCTTGA+TGG 0.353408 7_3:-18700058 None:intergenic
TGCTGTTAAATGCAGATTGA+TGG 0.355350 7_3:+18698914 Msa1095670:intron
ATCAAGATGGTTCACACTAC+TGG 0.359918 7_3:+18700839 Msa1095670:CDS
AATGAAATGGTAATTGAGTT+TGG 0.362148 7_3:+18700216 Msa1095670:CDS
TGTGTAATCTAGAAGGATTT+AGG 0.362208 7_3:+18699303 Msa1095670:CDS
TAGTAAGGAAGTTTCTGATT+TGG 0.367852 7_3:+18700903 Msa1095670:CDS
ATCGATAACTGTGGCAATGC+TGG 0.372909 7_3:+18699542 Msa1095670:CDS
ACACTACTGGGATTCACATT+TGG 0.373928 7_3:+18700852 Msa1095670:CDS
TCAATTAAGTAAGATTCGTT+TGG 0.375661 7_3:-18699092 None:intergenic
CTTTAATAACGTGACCTTTG+CGG 0.378527 7_3:-18699247 None:intergenic
TGTTTGGTGATCACGAAGTA+TGG 0.379061 7_3:+18700175 Msa1095670:CDS
CCTTCTCTGTTAACATATCA+TGG 0.390633 7_3:-18699466 None:intergenic
CAGACGGTGATTTAGCTATA+AGG 0.395580 7_3:+18700031 Msa1095670:CDS
CATGGGAGTGGTGGATGTTG+AGG 0.400340 7_3:+18698148 Msa1095670:CDS
AGAGAAGGATTGCGGGTTGT+TGG 0.401759 7_3:+18699481 Msa1095670:CDS
GTGCATATTGATATAAATTC+AGG 0.402681 7_3:+18699407 Msa1095670:CDS
CGATTCAGCACAAGATACTT+AGG 0.404688 7_3:-18700778 None:intergenic
ATGGGAGTGGTGGATGTTGA+GGG 0.417586 7_3:+18698149 Msa1095670:CDS
GCAATCTGTGTTGACAGTTT+GGG 0.420047 7_3:+18698179 Msa1095670:CDS
CTGCCTTCCCATATTGAGAT+TGG 0.421126 7_3:-18700453 None:intergenic
TGACACTGCTAGTGACGATT+TGG 0.427080 7_3:+18699022 Msa1095670:CDS
AACTGTCAACACAGATTGCT+TGG 0.429184 7_3:-18698175 None:intergenic
TCAATGAGATGTTTGAGAAA+AGG 0.443065 7_3:+18700259 Msa1095670:CDS
GTACTTATGTTTCTTGTAGG+TGG 0.452343 7_3:-18699851 None:intergenic
CAGTGTTGCAGACCAGTCTA+AGG 0.459285 7_3:+18700473 Msa1095670:CDS
TTGATATAAATTCAGGTCGT+TGG 0.459962 7_3:+18699414 Msa1095670:CDS
CTGATCACCAATCTCAATAT+GGG 0.461759 7_3:+18700446 Msa1095670:CDS
TGTTAACAGAGAAGGATTGC+GGG 0.462815 7_3:+18699474 Msa1095670:CDS
CCCGTGCTTCTTGAACATAC+AGG 0.463615 7_3:-18701063 None:intergenic
ACACCAGAAAACACGTCAAA+AGG 0.466803 7_3:-18699880 None:intergenic
TTGAATATAGACAACATTGA+TGG 0.468403 7_3:+18698939 Msa1095670:CDS
ATAAAGGTTACTCAAATGAT+TGG 0.469555 7_3:+18699566 Msa1095670:CDS
AGGGACATATGTTTGGTTGT+TGG 0.471237 7_3:+18699960 Msa1095670:CDS
TCTAGGTGTACTATTACCGC+TGG 0.471535 7_3:-18701094 None:intergenic
CAATTTGGTGAATCTTAGTA+AGG 0.472298 7_3:+18700888 Msa1095670:CDS
CACGTTATTAAAGATAAGAA+TGG 0.487511 7_3:+18699257 Msa1095670:CDS
GAAATCTGCAATACCAATGT+TGG 0.489977 7_3:-18700127 None:intergenic
CTAGGTGTACTATTACCGCT+GGG 0.490360 7_3:-18701093 None:intergenic
GTTGCGCACACTGTTGATGC+TGG 0.490792 7_3:+18699745 Msa1095670:CDS
TTGACAGTTTGGGAGTGCTT+TGG 0.490867 7_3:+18698189 Msa1095670:CDS
ATAGTCTCTAATGAGGTTGA+AGG 0.492727 7_3:+18699940 Msa1095670:CDS
AGGTTGAAGGGACATATGTT+TGG 0.499381 7_3:+18699953 Msa1095670:CDS
TAGCTTGCTTACCCAACCTA+TGG 0.503672 7_3:+18698457 Msa1095670:intron
GTCAATGTAACTCATGATGA+TGG 0.504196 7_3:+18698969 Msa1095670:CDS
CACGAAACCAGGTGTGGTTG+TGG 0.506910 7_3:+18699371 Msa1095670:CDS
TTTCACGCCACAACCACACC+TGG 0.510809 7_3:-18699378 None:intergenic
TGTTCAAGAAGCACGGGATG+TGG 0.510947 7_3:+18701069 Msa1095670:CDS
GGGATTCCAACTCCATAGGT+TGG 0.513903 7_3:-18698469 None:intergenic
GCTTACCCAACCTATGGAGT+TGG 0.515805 7_3:+18698463 Msa1095670:CDS
GGTGCATTTGCAAATGCTGC+TGG 0.519175 7_3:+18699587 Msa1095670:CDS
CCTCTCGAGCGACCTTAGAC+TGG 0.519542 7_3:-18700485 None:intergenic
GGATTCCAACTCCATAGGTT+GGG 0.523298 7_3:-18698468 None:intergenic
TGTTTGAGAAAAGGAATATG+TGG 0.523368 7_3:+18700268 Msa1095670:CDS
TGTAGACAATATTGTGAAGA+TGG 0.524311 7_3:+18699118 Msa1095670:CDS
TTCACATGTTCCAGTGGACA+TGG 0.525064 7_3:+18701026 Msa1095670:CDS
GCGGGTTGTTGGCTGCTCAC+AGG 0.526567 7_3:+18699492 Msa1095670:CDS
CCCTGTATGTTCAAGAAGCA+CGG 0.530500 7_3:+18701062 Msa1095670:CDS
TATGATAATAATAGATGCAT+GGG 0.533736 7_3:+18698131 Msa1095670:CDS
CCGTGCTTCTTGAACATACA+GGG 0.538379 7_3:-18701062 None:intergenic
AATGGTAATTGAGTTTGGCC+TGG 0.541870 7_3:+18700221 Msa1095670:CDS
GATTCAGCACAAGATACTTA+GGG 0.545318 7_3:-18700777 None:intergenic
TCAAGATGGTTCACACTACT+GGG 0.549463 7_3:+18700840 Msa1095670:CDS
CTAGTGTGAACCTGTAGTGG+TGG 0.553672 7_3:+18698648 Msa1095670:intron
TTTCTTGTAGGTGGCATCAA+AGG 0.554131 7_3:-18699842 None:intergenic
AACCATCTTGATAGTTTCCA+CGG 0.556190 7_3:-18700828 None:intergenic
GTGTGAACCTGTAGTGGTGG+GGG 0.556207 7_3:+18698651 Msa1095670:intron
GAAAATATTCTACACACTGG+TGG 0.557474 7_3:-18700405 None:intergenic
TGTGGTAGATGTGGTGCAAT+CGG 0.560706 7_3:+18701138 Msa1095670:CDS
TTGGCCTGGAAGAAAACAGT+TGG 0.561624 7_3:+18700235 Msa1095670:CDS
CCTGGGGATTCCAACTCCAT+AGG 0.564024 7_3:-18698473 None:intergenic
AGTGTGAACCTGTAGTGGTG+GGG 0.566451 7_3:+18698650 Msa1095670:intron
TAGTGTGAACCTGTAGTGGT+GGG 0.569592 7_3:+18698649 Msa1095670:intron
CAAAACTTATTCTGGAGCGA+TGG 0.570988 7_3:+18699778 Msa1095670:CDS
TACTTCCATAGTCTCTAATG+AGG 0.571298 7_3:+18699933 Msa1095670:CDS
CGCAATGCAATGTCCAACAT+TGG 0.573781 7_3:+18700114 Msa1095670:CDS
GTTTGAGAAAAGGAATATGT+GGG 0.574502 7_3:+18700269 Msa1095670:CDS
CTTGACTGAAGTAGGAGACA+TGG 0.574912 7_3:+18701185 Msa1095670:CDS
ATGTTAACAGAGAAGGATTG+CGG 0.577180 7_3:+18699473 Msa1095670:CDS
CCTGTATGTTCAAGAAGCAC+GGG 0.577351 7_3:+18701063 Msa1095670:CDS
GCGGTAATAGTACACCTAGA+AGG 0.577609 7_3:+18701097 Msa1095670:CDS
ATCCGTGGAAACTATCAAGA+TGG 0.579257 7_3:+18700826 Msa1095670:CDS
CCATGATATGTTAACAGAGA+AGG 0.581263 7_3:+18699466 Msa1095670:CDS
AGTATCTTGTGCTGAATCGT+TGG 0.582031 7_3:+18700782 Msa1095670:CDS
TTTGGCTGCAATGAAAGGCA+AGG 0.582505 7_3:+18699990 Msa1095670:CDS
GAAGTAGGAGACATGGGTGC+GGG 0.583921 7_3:+18701192 Msa1095670:CDS
GCATTTGCAAATGCTGCTGG+TGG 0.585164 7_3:+18699590 Msa1095670:CDS
TCAATGTAACTCATGATGAT+GGG 0.586905 7_3:+18698970 Msa1095670:CDS
TAGTCTCTAATGAGGTTGAA+GGG 0.589592 7_3:+18699941 Msa1095670:CDS
CCAGTCTAAGGTCGCTCGAG+AGG 0.592281 7_3:+18700485 Msa1095670:CDS
TTATGATAATAATAGATGCA+TGG 0.595369 7_3:+18698130 Msa1095670:CDS
TGTCCTACCTTGACTGAAGT+AGG 0.598549 7_3:+18701177 Msa1095670:CDS
TAATAGATGCATGGGAGTGG+TGG 0.599833 7_3:+18698139 Msa1095670:CDS
GATCCCTTGTGAGCATATTG+TGG 0.601137 7_3:+18700723 Msa1095670:CDS
GTGGTCCAAGACACGAAACC+AGG 0.602270 7_3:+18699360 Msa1095670:CDS
TTGCTAGTGTGAACCTGTAG+TGG 0.608708 7_3:+18698645 Msa1095670:intron
GTGTGCGCAACAAACATCAA+AGG 0.610015 7_3:-18699733 None:intergenic
ACGATTTGTACGTTTAAGCG+AGG 0.611191 7_3:+18701230 Msa1095670:CDS
GTTATCATAGATTATGTGCG+TGG 0.614371 7_3:+18700082 Msa1095670:CDS
TCGTTGGTCACAATTTGCAA+AGG 0.617164 7_3:+18700798 Msa1095670:CDS
CATGTCTCCTACTTCAGTCA+AGG 0.617625 7_3:-18701184 None:intergenic
CATTTGCAAATGCTGCTGGT+GGG 0.618076 7_3:+18699591 Msa1095670:CDS
GTAGGAGACATGGGTGCGGG+TGG 0.622603 7_3:+18701195 Msa1095670:CDS
CCAATTTCTGTAATAACAGA+CGG 0.624337 7_3:+18700015 Msa1095670:CDS
ATCGAAAATATTCTACACAC+TGG 0.626984 7_3:-18700408 None:intergenic
ACCGCCACAATATGCTCACA+AGG 0.627656 7_3:-18700727 None:intergenic
ATAGTACACCTAGAAGGCAT+AGG 0.627906 7_3:+18701103 Msa1095670:CDS
TTATCATAGATTATGTGCGT+GGG 0.628769 7_3:+18700083 Msa1095670:CDS
CCTATGGAGTTGGAATCCCC+AGG 0.631093 7_3:+18698473 Msa1095670:CDS
ATAGACAACATTGATGGTGA+AGG 0.635617 7_3:+18698945 Msa1095670:CDS
TCTCCTACTTCAGTCAAGGT+AGG 0.636634 7_3:-18701180 None:intergenic
TAATAATAGATGCATGGGAG+TGG 0.640073 7_3:+18698136 Msa1095670:CDS
ACACTGTTGATGCTGGTGGT+AGG 0.648174 7_3:+18699752 Msa1095670:CDS
TTGACTGAAGTAGGAGACAT+GGG 0.652626 7_3:+18701186 Msa1095670:CDS
TCACCAATCTCAATATGGGA+AGG 0.653584 7_3:+18700450 Msa1095670:CDS
AAGGATTTAGGTATGACAGA+GGG 0.653871 7_3:+18699315 Msa1095670:CDS
AATAACGTGACCTTTGCGGA+CGG 0.654807 7_3:-18699243 None:intergenic
AGCACGGGATGTGGCCCCAG+CGG 0.656472 7_3:+18701078 Msa1095670:CDS
CCCTTGTGAGCATATTGTGG+CGG 0.661298 7_3:+18700726 Msa1095670:CDS
CAATGTAACTCATGATGATG+GGG 0.663298 7_3:+18698971 Msa1095670:CDS
TTTGCAAAGGAGTCTATCCG+TGG 0.667803 7_3:+18700811 Msa1095670:CDS
AAGATTCAAATCGATAACTG+TGG 0.673943 7_3:+18699533 Msa1095670:CDS
ATAGAATTCACATGTTCCAG+TGG 0.677778 7_3:+18701020 Msa1095670:intron
ACATCAGAGAAACGCAAGCG+TGG 0.681208 7_3:+18699341 Msa1095670:CDS
ATACATACATGTGGTAGATG+TGG 0.681691 7_3:+18701129 Msa1095670:CDS
TGAAGTAGGAGACATGGGTG+CGG 0.686217 7_3:+18701191 Msa1095670:CDS
GAAGGATTTAGGTATGACAG+AGG 0.687850 7_3:+18699314 Msa1095670:CDS
CCAAGACACGAAACCAGGTG+TGG 0.688722 7_3:+18699365 Msa1095670:CDS
GCGCACACTGTTGATGCTGG+TGG 0.696330 7_3:+18699748 Msa1095670:CDS
TAGGTGTACTATTACCGCTG+GGG 0.700876 7_3:-18701092 None:intergenic
GTACACCTAGAAGGCATAGG+CGG 0.707372 7_3:+18701106 Msa1095670:CDS
CATAGGCGGATACATACATG+TGG 0.723142 7_3:+18701120 Msa1095670:CDS
CCGCCACAATATGCTCACAA+GGG 0.726641 7_3:-18700726 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATAAAATAGATGTT+TGG + chr7_3:18698408-18698427 Msa1095670:intron 10.0%
!! AAAAAATAAAATAGATGTTT+GGG + chr7_3:18698409-18698428 Msa1095670:intron 10.0%
!! TTAAAAAAAAAATGTATGTT+TGG + chr7_3:18700159-18700178 Msa1095670:CDS 10.0%
!!! TTTTTAATCATATGTATTGT+CGG + chr7_3:18698251-18698270 Msa1095670:intron 15.0%
!! TATAATTAATGAATTCTCTT+CGG + chr7_3:18698380-18698399 Msa1095670:intron 15.0%
!! CTAAATAAATTAATGGTATA+TGG - chr7_3:18698853-18698872 None:intergenic 15.0%
!! AGTATCTAATAATGATATTA+GGG - chr7_3:18700575-18700594 None:intergenic 15.0%
!! TTATGATAATAATAGATGCA+TGG + chr7_3:18698130-18698149 Msa1095670:CDS 20.0%
!! TATGATAATAATAGATGCAT+GGG + chr7_3:18698131-18698150 Msa1095670:CDS 20.0%
!!! TTTTAATCATATGTATTGTC+GGG + chr7_3:18698252-18698271 Msa1095670:intron 20.0%
!!! ATTGTAAAAACTTGTTATGT+TGG + chr7_3:18698345-18698364 Msa1095670:intron 20.0%
!! ATACAGGCTAAATAAATTAA+TGG - chr7_3:18698860-18698879 None:intergenic 20.0%
!! ATTAATTTATTTAGCCTGTA+TGG + chr7_3:18698859-18698878 Msa1095670:intron 20.0%
!! CAAAAGAATTATGAAATCTT+TGG + chr7_3:18699808-18699827 Msa1095670:CDS 20.0%
!!! CATAATCTATGATAACTTTT+GGG - chr7_3:18700078-18700097 None:intergenic 20.0%
!!! ACATAATCTATGATAACTTT+TGG - chr7_3:18700079-18700098 None:intergenic 20.0%
!! TGAAAAACTATTGAATGAAA+TGG + chr7_3:18700203-18700222 Msa1095670:CDS 20.0%
!! GAGTATCTAATAATGATATT+AGG - chr7_3:18700576-18700595 None:intergenic 20.0%
!! TTAGATGATTTGTAGTAGAA+TGG + chr7_3:18698224-18698243 Msa1095670:intron 25.0%
!!! GTATTTTTTTGTTCTGATAG+TGG + chr7_3:18698515-18698534 Msa1095670:intron 25.0%
!!! TTTGTTTTTCTTTTACTGTC+TGG + chr7_3:18698590-18698609 Msa1095670:intron 25.0%
! TAATGTAGTACAAGTTATAG+TGG - chr7_3:18698775-18698794 None:intergenic 25.0%
! TTGAATATAGACAACATTGA+TGG + chr7_3:18698939-18698958 Msa1095670:CDS 25.0%
! TCAATTAAGTAAGATTCGTT+TGG - chr7_3:18699095-18699114 None:intergenic 25.0%
! CACGTTATTAAAGATAAGAA+TGG + chr7_3:18699257-18699276 Msa1095670:CDS 25.0%
! GTGCATATTGATATAAATTC+AGG + chr7_3:18699407-18699426 Msa1095670:CDS 25.0%
! ATAAAGGTTACTCAAATGAT+TGG + chr7_3:18699566-18699585 Msa1095670:CDS 25.0%
! TTTGTACTTATGTTTCTTGT+AGG - chr7_3:18699857-18699876 None:intergenic 25.0%
! CAAAAATGATTGTTTGGTTA+TGG - chr7_3:18699912-18699931 None:intergenic 25.0%
! AAGTAGCAAAAATGATTGTT+TGG - chr7_3:18699918-18699937 None:intergenic 25.0%
! AATGAAATGGTAATTGAGTT+TGG + chr7_3:18700216-18700235 Msa1095670:CDS 25.0%
! TTCATCTTTGAATGTACAAA+CGG - chr7_3:18700361-18700380 None:intergenic 25.0%
!! AGAATATTTTCGATTTAGAG+AGG + chr7_3:18700417-18700436 Msa1095670:CDS 25.0%
! CACAAAAGAAATATTCATCT+TGG + chr7_3:18700525-18700544 Msa1095670:intron 25.0%
!! ATATTAGGGAAACCTTTTTA+AGG - chr7_3:18700561-18700580 None:intergenic 25.0%
! TGTCAAGGAATAAATATCAA+AGG - chr7_3:18700611-18700630 None:intergenic 25.0%
! ATGATTTGTAGTAGAATGGA+TGG + chr7_3:18698228-18698247 Msa1095670:intron 30.0%
TGGCTGAATTAGATCAAAAT+TGG + chr7_3:18698308-18698327 Msa1095670:intron 30.0%
! AGATGTTTGGGTAAACTTTT+TGG + chr7_3:18698421-18698440 Msa1095670:intron 30.0%
! GATGTTTGGGTAAACTTTTT+GGG + chr7_3:18698422-18698441 Msa1095670:intron 30.0%
! TTTACTGTCTGGTTGTTATT+TGG + chr7_3:18698601-18698620 Msa1095670:intron 30.0%
!! TTACTGTCTGGTTGTTATTT+GGG + chr7_3:18698602-18698621 Msa1095670:intron 30.0%
!!! TTATTTGGGCTGGTTTTTAT+TGG + chr7_3:18698616-18698635 Msa1095670:intron 30.0%
!! TGATGTTTTTATATGATGCG+AGG - chr7_3:18698727-18698746 None:intergenic 30.0%
!! TATAGTGGATATTTGAGACT+CGG - chr7_3:18698760-18698779 None:intergenic 30.0%
! AAACACTTTTGTTCATTGCT+TGG - chr7_3:18698824-18698843 None:intergenic 30.0%
TCAATGTAACTCATGATGAT+GGG + chr7_3:18698970-18698989 Msa1095670:CDS 30.0%
TGTAGACAATATTGTGAAGA+TGG + chr7_3:18699118-18699137 Msa1095670:CDS 30.0%
! TTGCGTACTCATTTTATTGT+TGG + chr7_3:18699198-18699217 Msa1095670:CDS 30.0%
!! TGTTGGTTTGCAAAGATTAA+TGG + chr7_3:18699215-18699234 Msa1095670:CDS 30.0%
! ACTTTTGTGTGTAATCTAGA+AGG + chr7_3:18699296-18699315 Msa1095670:CDS 30.0%
TGTGTAATCTAGAAGGATTT+AGG + chr7_3:18699303-18699322 Msa1095670:CDS 30.0%
TTGATATAAATTCAGGTCGT+TGG + chr7_3:18699414-18699433 Msa1095670:CDS 30.0%
AAGATTCAAATCGATAACTG+TGG + chr7_3:18699533-18699552 Msa1095670:CDS 30.0%
GTAGGTTACAAAACTTATTC+TGG + chr7_3:18699770-18699789 Msa1095670:CDS 30.0%
CCAATTTCTGTAATAACAGA+CGG + chr7_3:18700015-18700034 Msa1095670:CDS 30.0%
TTATCATAGATTATGTGCGT+GGG + chr7_3:18700083-18700102 Msa1095670:CDS 30.0%
TCAATGAGATGTTTGAGAAA+AGG + chr7_3:18700259-18700278 Msa1095670:CDS 30.0%
TGTTTGAGAAAAGGAATATG+TGG + chr7_3:18700268-18700287 Msa1095670:CDS 30.0%
GTTTGAGAAAAGGAATATGT+GGG + chr7_3:18700269-18700288 Msa1095670:CDS 30.0%
ATCGAAAATATTCTACACAC+TGG - chr7_3:18700411-18700430 None:intergenic 30.0%
! GGTACATTTTGTCCTTAAAA+AGG + chr7_3:18700546-18700565 Msa1095670:intron 30.0%
TTGACAAAATATTGAGACGA+GGG + chr7_3:18700625-18700644 Msa1095670:intron 30.0%
CATTTAAATTCATCGTTGAG+TGG - chr7_3:18700676-18700695 None:intergenic 30.0%
TAAATGCACTTGTCTTAGAA+TGG + chr7_3:18700690-18700709 Msa1095670:intron 30.0%
TGTCTTAGAATGGAATCTAT+TGG + chr7_3:18700700-18700719 Msa1095670:intron 30.0%
GTCTTAGAATGGAATCTATT+GGG + chr7_3:18700701-18700720 Msa1095670:intron 30.0%
CTTACTAAGATTCACCAAAT+TGG - chr7_3:18700890-18700909 None:intergenic 30.0%
! CAATTTGGTGAATCTTAGTA+AGG + chr7_3:18700888-18700907 Msa1095670:CDS 30.0%
TAGTAAGGAAGTTTCTGATT+TGG + chr7_3:18700903-18700922 Msa1095670:CDS 30.0%
! AATTCTATGGACCATTTTCA+TGG - chr7_3:18701008-18701027 None:intergenic 30.0%
TAATAATAGATGCATGGGAG+TGG + chr7_3:18698136-18698155 Msa1095670:CDS 35.0%
TAATCATATGTATTGTCGGG+TGG + chr7_3:18698255-18698274 Msa1095670:intron 35.0%
! GCTTTTGCATTTCTTTAGGT+TGG + chr7_3:18698277-18698296 Msa1095670:intron 35.0%
!! TCTTTAGGTTGGACAAATAG+TGG + chr7_3:18698288-18698307 Msa1095670:intron 35.0%
TTTATTTAGCCTGTATGGTC+TGG + chr7_3:18698864-18698883 Msa1095670:intron 35.0%
AGTTATTAACCAGACCATAC+AGG - chr7_3:18698876-18698895 None:intergenic 35.0%
TGCTGTTAAATGCAGATTGA+TGG + chr7_3:18698914-18698933 Msa1095670:intron 35.0%
!! ATAGACAACATTGATGGTGA+AGG + chr7_3:18698945-18698964 Msa1095670:CDS 35.0%
GTCAATGTAACTCATGATGA+TGG + chr7_3:18698969-18698988 Msa1095670:CDS 35.0%
! CAATGTAACTCATGATGATG+GGG + chr7_3:18698971-18698990 Msa1095670:CDS 35.0%
CTTTAATAACGTGACCTTTG+CGG - chr7_3:18699250-18699269 None:intergenic 35.0%
AAGGATTTAGGTATGACAGA+GGG + chr7_3:18699315-18699334 Msa1095670:CDS 35.0%
CCTTCTCTGTTAACATATCA+TGG - chr7_3:18699469-18699488 None:intergenic 35.0%
CCATGATATGTTAACAGAGA+AGG + chr7_3:18699466-18699485 Msa1095670:CDS 35.0%
ATGTTAACAGAGAAGGATTG+CGG + chr7_3:18699473-18699492 Msa1095670:CDS 35.0%
!! CTTTAAGACGAAGATCAAGA+AGG - chr7_3:18699712-18699731 None:intergenic 35.0%
GTACTTATGTTTCTTGTAGG+TGG - chr7_3:18699854-18699873 None:intergenic 35.0%
TACTTCCATAGTCTCTAATG+AGG + chr7_3:18699933-18699952 Msa1095670:CDS 35.0%
TTCAACCTCATTAGAGACTA+TGG - chr7_3:18699941-18699960 None:intergenic 35.0%
ATAGTCTCTAATGAGGTTGA+AGG + chr7_3:18699940-18699959 Msa1095670:CDS 35.0%
TAGTCTCTAATGAGGTTGAA+GGG + chr7_3:18699941-18699960 Msa1095670:CDS 35.0%
! TTGGTTGTTGGAACAGTTTT+TGG + chr7_3:18699972-18699991 Msa1095670:CDS 35.0%
CCGTCTGTTATTACAGAAAT+TGG - chr7_3:18700018-18700037 None:intergenic 35.0%
GTTATCATAGATTATGTGCG+TGG + chr7_3:18700082-18700101 Msa1095670:CDS 35.0%
GAAATCTGCAATACCAATGT+TGG - chr7_3:18700130-18700149 None:intergenic 35.0%
GAAAATATTCTACACACTGG+TGG - chr7_3:18700408-18700427 None:intergenic 35.0%
CTGATCACCAATCTCAATAT+GGG + chr7_3:18700446-18700465 Msa1095670:CDS 35.0%
! CTCGTCTCAATATTTTGTCA+AGG - chr7_3:18700626-18700645 None:intergenic 35.0%
CTTGACAAAATATTGAGACG+AGG + chr7_3:18700624-18700643 Msa1095670:intron 35.0%
AAATATTGAGACGAGGGATA+TGG + chr7_3:18700631-18700650 Msa1095670:intron 35.0%
GATTCAGCACAAGATACTTA+GGG - chr7_3:18700780-18700799 None:intergenic 35.0%
! AACCATCTTGATAGTTTCCA+CGG - chr7_3:18700831-18700850 None:intergenic 35.0%
!! AGTTTCTGATTTGGCATATC+AGG + chr7_3:18700912-18700931 Msa1095670:CDS 35.0%
ACTGGAACATGTGAATTCTA+TGG - chr7_3:18701021-18701040 None:intergenic 35.0%
ATAGAATTCACATGTTCCAG+TGG + chr7_3:18701020-18701039 Msa1095670:intron 35.0%
ATACATACATGTGGTAGATG+TGG + chr7_3:18701129-18701148 Msa1095670:CDS 35.0%
AACTGTCAACACAGATTGCT+TGG - chr7_3:18698178-18698197 None:intergenic 40.0%
! AGCAATCTGTGTTGACAGTT+TGG + chr7_3:18698178-18698197 Msa1095670:CDS 40.0%
! GCAATCTGTGTTGACAGTTT+GGG + chr7_3:18698179-18698198 Msa1095670:CDS 40.0%
! GGTGGCTTTTGCATTTCTTT+AGG + chr7_3:18698273-18698292 Msa1095670:intron 40.0%
CAAGTATAACAGCAACCTCA+AGG - chr7_3:18698569-18698588 None:intergenic 40.0%
! CTTGAGGTTGCTGTTATACT+TGG + chr7_3:18698567-18698586 Msa1095670:intron 40.0%
!!! GGGCTGGTTTTTATTGGTTT+TGG + chr7_3:18698622-18698641 Msa1095670:intron 40.0%
GAAGGATTTAGGTATGACAG+AGG + chr7_3:18699314-18699333 Msa1095670:CDS 40.0%
TGTTAACAGAGAAGGATTGC+GGG + chr7_3:18699474-18699493 Msa1095670:CDS 40.0%
CAAATGTCTTCAGATGCCAA+AGG + chr7_3:18699674-18699693 Msa1095670:intron 40.0%
!! CAAAACTTATTCTGGAGCGA+TGG + chr7_3:18699778-18699797 Msa1095670:CDS 40.0%
TTTCTTGTAGGTGGCATCAA+AGG - chr7_3:18699845-18699864 None:intergenic 40.0%
! TGTCCTTTTGACGTGTTTTC+TGG + chr7_3:18699877-18699896 Msa1095670:CDS 40.0%
ACACCAGAAAACACGTCAAA+AGG - chr7_3:18699883-18699902 None:intergenic 40.0%
AGGTTGAAGGGACATATGTT+TGG + chr7_3:18699953-18699972 Msa1095670:CDS 40.0%
AGGGACATATGTTTGGTTGT+TGG + chr7_3:18699960-18699979 Msa1095670:CDS 40.0%
!!! CAGTTTTTGGCTGCAATGAA+AGG + chr7_3:18699985-18700004 Msa1095670:CDS 40.0%
CAGACGGTGATTTAGCTATA+AGG + chr7_3:18700031-18700050 Msa1095670:CDS 40.0%
TTTGGGAAACACTTGCTTGA+TGG - chr7_3:18700061-18700080 None:intergenic 40.0%
! TGTTTGGTGATCACGAAGTA+TGG + chr7_3:18700175-18700194 Msa1095670:CDS 40.0%
AATGGTAATTGAGTTTGGCC+TGG + chr7_3:18700221-18700240 Msa1095670:CDS 40.0%
! TGATCCAACTGTTTTCTTCC+AGG - chr7_3:18700242-18700261 None:intergenic 40.0%
! TGAAGCATTTCATAGCCACA+TGG + chr7_3:18700333-18700352 Msa1095670:intron 40.0%
! GAAGCATTTCATAGCCACAT+GGG + chr7_3:18700334-18700353 Msa1095670:intron 40.0%
GCTGATCACCAATCTCAATA+TGG + chr7_3:18700445-18700464 Msa1095670:CDS 40.0%
TCACCAATCTCAATATGGGA+AGG + chr7_3:18700450-18700469 Msa1095670:CDS 40.0%
CGATTCAGCACAAGATACTT+AGG - chr7_3:18700781-18700800 None:intergenic 40.0%
AGTATCTTGTGCTGAATCGT+TGG + chr7_3:18700782-18700801 Msa1095670:CDS 40.0%
TCGTTGGTCACAATTTGCAA+AGG + chr7_3:18700798-18700817 Msa1095670:CDS 40.0%
ATCCGTGGAAACTATCAAGA+TGG + chr7_3:18700826-18700845 Msa1095670:CDS 40.0%
ATCAAGATGGTTCACACTAC+TGG + chr7_3:18700839-18700858 Msa1095670:CDS 40.0%
TCAAGATGGTTCACACTACT+GGG + chr7_3:18700840-18700859 Msa1095670:CDS 40.0%
ACACTACTGGGATTCACATT+TGG + chr7_3:18700852-18700871 Msa1095670:CDS 40.0%
GTCTACTCAGTTCATCAGTA+AGG - chr7_3:18700969-18700988 None:intergenic 40.0%
AACTGAGTAGACTGAAATCG+AGG + chr7_3:18700977-18700996 Msa1095670:intron 40.0%
TCGAGGTTTAGCCATGAAAA+TGG + chr7_3:18700994-18701013 Msa1095670:intron 40.0%
! AGTATGTTTTCCATGTCCAC+TGG - chr7_3:18701039-18701058 None:intergenic 40.0%
! ATAGTACACCTAGAAGGCAT+AGG + chr7_3:18701103-18701122 Msa1095670:CDS 40.0%
TTGACTGAAGTAGGAGACAT+GGG + chr7_3:18701186-18701205 Msa1095670:CDS 40.0%
ACGATTTGTACGTTTAAGCG+AGG + chr7_3:18701230-18701249 Msa1095670:CDS 40.0%
TAATAGATGCATGGGAGTGG+TGG + chr7_3:18698139-18698158 Msa1095670:CDS 45.0%
!! TTGACAGTTTGGGAGTGCTT+TGG + chr7_3:18698189-18698208 Msa1095670:CDS 45.0%
!! TAGCTTGCTTACCCAACCTA+TGG + chr7_3:18698457-18698476 Msa1095670:intron 45.0%
GGATTCCAACTCCATAGGTT+GGG - chr7_3:18698471-18698490 None:intergenic 45.0%
TACCTCCTCAAAAACTCCTG+GGG - chr7_3:18698492-18698511 None:intergenic 45.0%
CTACCTCCTCAAAAACTCCT+GGG - chr7_3:18698493-18698512 None:intergenic 45.0%
ACTACCTCCTCAAAAACTCC+TGG - chr7_3:18698494-18698513 None:intergenic 45.0%
!! AGGAGTTTTTGAGGAGGTAG+TGG + chr7_3:18698493-18698512 Msa1095670:intron 45.0%
AACAGCAACCTCAAGGACAA+AGG - chr7_3:18698562-18698581 None:intergenic 45.0%
!! TGTCTGGTTGTTATTTGGGC+TGG + chr7_3:18698606-18698625 Msa1095670:intron 45.0%
TTGCTAGTGTGAACCTGTAG+TGG + chr7_3:18698645-18698664 Msa1095670:intron 45.0%
TAGTGTGAACCTGTAGTGGT+GGG + chr7_3:18698649-18698668 Msa1095670:intron 45.0%
ATGCGTGGGTATGCATAGTT+GGG + chr7_3:18698682-18698701 Msa1095670:intron 45.0%
TGACACTGCTAGTGACGATT+TGG + chr7_3:18699022-18699041 Msa1095670:CDS 45.0%
AATAACGTGACCTTTGCGGA+CGG - chr7_3:18699246-18699265 None:intergenic 45.0%
ATCGATAACTGTGGCAATGC+TGG + chr7_3:18699542-18699561 Msa1095670:CDS 45.0%
CTGTGGCAATGCTGGAATAA+AGG + chr7_3:18699550-18699569 Msa1095670:CDS 45.0%
CATTTGCAAATGCTGCTGGT+GGG + chr7_3:18699591-18699610 Msa1095670:CDS 45.0%
! CTGGTGGGTATGATAAGGTT+GGG + chr7_3:18699606-18699625 Msa1095670:intron 45.0%
! AAGGTACCTAACAGCACCTT+TGG - chr7_3:18699693-18699712 None:intergenic 45.0%
GTGTGCGCAACAAACATCAA+AGG - chr7_3:18699736-18699755 None:intergenic 45.0%
TTTGGCTGCAATGAAAGGCA+AGG + chr7_3:18699990-18700009 Msa1095670:CDS 45.0%
CGCAATGCAATGTCCAACAT+TGG + chr7_3:18700114-18700133 Msa1095670:CDS 45.0%
TTGGCCTGGAAGAAAACAGT+TGG + chr7_3:18700235-18700254 Msa1095670:CDS 45.0%
TGTGGGCAACATCTCATGTT+AGG + chr7_3:18700286-18700305 Msa1095670:intron 45.0%
GTGGGCAACATCTCATGTTA+GGG + chr7_3:18700287-18700306 Msa1095670:intron 45.0%
TGGGCAACATCTCATGTTAG+GGG + chr7_3:18700288-18700307 Msa1095670:intron 45.0%
GGGGAATACGAACTACATCA+GGG + chr7_3:18700308-18700327 Msa1095670:intron 45.0%
AATGTACAAACGGACCCATG+TGG - chr7_3:18700351-18700370 None:intergenic 45.0%
CTGCCTTCCCATATTGAGAT+TGG - chr7_3:18700456-18700475 None:intergenic 45.0%
GATCCCTTGTGAGCATATTG+TGG + chr7_3:18700723-18700742 Msa1095670:CDS 45.0%
TTTGCAAAGGAGTCTATCCG+TGG + chr7_3:18700811-18700830 Msa1095670:CDS 45.0%
TTCACATGTTCCAGTGGACA+TGG + chr7_3:18701026-18701045 Msa1095670:CDS 45.0%
CCGTGCTTCTTGAACATACA+GGG - chr7_3:18701065-18701084 None:intergenic 45.0%
CCCTGTATGTTCAAGAAGCA+CGG + chr7_3:18701062-18701081 Msa1095670:CDS 45.0%
! CCTGTATGTTCAAGAAGCAC+GGG + chr7_3:18701063-18701082 Msa1095670:CDS 45.0%
TAGGTGTACTATTACCGCTG+GGG - chr7_3:18701095-18701114 None:intergenic 45.0%
CTAGGTGTACTATTACCGCT+GGG - chr7_3:18701096-18701115 None:intergenic 45.0%
TCTAGGTGTACTATTACCGC+TGG - chr7_3:18701097-18701116 None:intergenic 45.0%
GCGGTAATAGTACACCTAGA+AGG + chr7_3:18701097-18701116 Msa1095670:CDS 45.0%
CATAGGCGGATACATACATG+TGG + chr7_3:18701120-18701139 Msa1095670:CDS 45.0%
TGTGGTAGATGTGGTGCAAT+CGG + chr7_3:18701138-18701157 Msa1095670:CDS 45.0%
TGTCCTACCTTGACTGAAGT+AGG + chr7_3:18701177-18701196 Msa1095670:CDS 45.0%
TCTCCTACTTCAGTCAAGGT+AGG - chr7_3:18701183-18701202 None:intergenic 45.0%
CATGTCTCCTACTTCAGTCA+AGG - chr7_3:18701187-18701206 None:intergenic 45.0%
CTTGACTGAAGTAGGAGACA+TGG + chr7_3:18701185-18701204 Msa1095670:CDS 45.0%
!!! ATACATTTTTTTTTTAAATA+AGG - chr7_3:18700156-18700175 None:intergenic 5.0%
!! ATGGGAGTGGTGGATGTTGA+GGG + chr7_3:18698149-18698168 Msa1095670:CDS 50.0%
GCTTACCCAACCTATGGAGT+TGG + chr7_3:18698463-18698482 Msa1095670:CDS 50.0%
GGGATTCCAACTCCATAGGT+TGG - chr7_3:18698472-18698491 None:intergenic 50.0%
! GGAATCCCCAGGAGTTTTTG+AGG + chr7_3:18698484-18698503 Msa1095670:CDS 50.0%
!! ATCCCCAGGAGTTTTTGAGG+AGG + chr7_3:18698487-18698506 Msa1095670:CDS 50.0%
CCTCAAGGACAAAGGTTCCA+AGG - chr7_3:18698554-18698573 None:intergenic 50.0%
CCTTGGAACCTTTGTCCTTG+AGG + chr7_3:18698551-18698570 Msa1095670:intron 50.0%
CTAGTGTGAACCTGTAGTGG+TGG + chr7_3:18698648-18698667 Msa1095670:intron 50.0%
AGTGTGAACCTGTAGTGGTG+GGG + chr7_3:18698650-18698669 Msa1095670:intron 50.0%
GATGCGTGGGTATGCATAGT+TGG + chr7_3:18698681-18698700 Msa1095670:intron 50.0%
!! AATGGTTTTGCCGTCCGCAA+AGG + chr7_3:18699233-18699252 Msa1095670:CDS 50.0%
ACATCAGAGAAACGCAAGCG+TGG + chr7_3:18699341-18699360 Msa1095670:CDS 50.0%
! AGAGAAGGATTGCGGGTTGT+TGG + chr7_3:18699481-18699500 Msa1095670:CDS 50.0%
GGTGCATTTGCAAATGCTGC+TGG + chr7_3:18699587-18699606 Msa1095670:CDS 50.0%
GCATTTGCAAATGCTGCTGG+TGG + chr7_3:18699590-18699609 Msa1095670:CDS 50.0%
! TGCTGCTGGTGGGTATGATA+AGG + chr7_3:18699601-18699620 Msa1095670:intron 50.0%
! GCTGGTGGGTATGATAAGGT+TGG + chr7_3:18699605-18699624 Msa1095670:intron 50.0%
!! CAGATGCCAAAGGTGCTGTT+AGG + chr7_3:18699684-18699703 Msa1095670:intron 50.0%
ACACTGTTGATGCTGGTGGT+AGG + chr7_3:18699752-18699771 Msa1095670:CDS 50.0%
GGGCAACATCTCATGTTAGG+GGG + chr7_3:18700289-18700308 Msa1095670:intron 50.0%
GGGGGAATACGAACTACATC+AGG + chr7_3:18700307-18700326 Msa1095670:intron 50.0%
CAGTGTTGCAGACCAGTCTA+AGG + chr7_3:18700473-18700492 Msa1095670:CDS 50.0%
CCGCCACAATATGCTCACAA+GGG - chr7_3:18700729-18700748 None:intergenic 50.0%
CCCTTGTGAGCATATTGTGG+CGG + chr7_3:18700726-18700745 Msa1095670:CDS 50.0%
ACCGCCACAATATGCTCACA+AGG - chr7_3:18700730-18700749 None:intergenic 50.0%
CCCGTGCTTCTTGAACATAC+AGG - chr7_3:18701066-18701085 None:intergenic 50.0%
! TGTTCAAGAAGCACGGGATG+TGG + chr7_3:18701069-18701088 Msa1095670:CDS 50.0%
! GTACACCTAGAAGGCATAGG+CGG + chr7_3:18701106-18701125 Msa1095670:CDS 50.0%
TGTATCCGCCTATGCCTTCT+AGG - chr7_3:18701114-18701133 None:intergenic 50.0%
TGAAGTAGGAGACATGGGTG+CGG + chr7_3:18701191-18701210 Msa1095670:CDS 50.0%
!! CATGGGAGTGGTGGATGTTG+AGG + chr7_3:18698148-18698167 Msa1095670:CDS 55.0%
CCTGGGGATTCCAACTCCAT+AGG - chr7_3:18698476-18698495 None:intergenic 55.0%
CCTATGGAGTTGGAATCCCC+AGG + chr7_3:18698473-18698492 Msa1095670:CDS 55.0%
GTGGATGCTTGCGTGAACCT+TGG + chr7_3:18698534-18698553 Msa1095670:intron 55.0%
GTGTGAACCTGTAGTGGTGG+GGG + chr7_3:18698651-18698670 Msa1095670:intron 55.0%
GTGGTCCAAGACACGAAACC+AGG + chr7_3:18699360-18699379 Msa1095670:CDS 55.0%
CCACACCTGGTTTCGTGTCT+TGG - chr7_3:18699368-18699387 None:intergenic 55.0%
CCAAGACACGAAACCAGGTG+TGG + chr7_3:18699365-18699384 Msa1095670:CDS 55.0%
CACGAAACCAGGTGTGGTTG+TGG + chr7_3:18699371-18699390 Msa1095670:CDS 55.0%
TTTCACGCCACAACCACACC+TGG - chr7_3:18699381-18699400 None:intergenic 55.0%
GTTGCGCACACTGTTGATGC+TGG + chr7_3:18699745-18699764 Msa1095670:CDS 55.0%
GGTTGCGAGACACGCCAATT+TGG + chr7_3:18700873-18700892 Msa1095670:CDS 55.0%
GAAGTAGGAGACATGGGTGC+GGG + chr7_3:18701192-18701211 Msa1095670:CDS 55.0%
ACACTAGCCCCCACCACTAC+AGG - chr7_3:18698661-18698680 None:intergenic 60.0%
! TGGGGGCTAGTGTGATGCGT+GGG + chr7_3:18698668-18698687 Msa1095670:CDS 60.0%
GCGCACACTGTTGATGCTGG+TGG + chr7_3:18699748-18699767 Msa1095670:CDS 60.0%
CCTCTCGAGCGACCTTAGAC+TGG - chr7_3:18700488-18700507 None:intergenic 60.0%
! CCAGTCTAAGGTCGCTCGAG+AGG + chr7_3:18700485-18700504 Msa1095670:CDS 60.0%
! GTGGGGGCTAGTGTGATGCG+TGG + chr7_3:18698667-18698686 Msa1095670:CDS 65.0%
! GCGGGTTGTTGGCTGCTCAC+AGG + chr7_3:18699492-18699511 Msa1095670:CDS 65.0%
GTAGGAGACATGGGTGCGGG+TGG + chr7_3:18701195-18701214 Msa1095670:CDS 65.0%
AGCACGGGATGTGGCCCCAG+CGG + chr7_3:18701078-18701097 Msa1095670:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 18698125 18701260 18698125 ID=Msa1095670;Name=Msa1095670
chr7_3 mRNA 18698125 18701260 18698125 ID=Msa1095670-mRNA-1;Parent=Msa1095670;Name=Msa1095670-mRNA-1;_AED=0.40;_eAED=0.41;_QI=0|0|0|0.37|1|1|8|0|665
chr7_3 exon 18698125 18698210 18698125 ID=Msa1095670-mRNA-1:exon:4061;Parent=Msa1095670-mRNA-1
chr7_3 exon 18698460 18698508 18698460 ID=Msa1095670-mRNA-1:exon:4062;Parent=Msa1095670-mRNA-1
chr7_3 exon 18698652 18698689 18698652 ID=Msa1095670-mRNA-1:exon:4063;Parent=Msa1095670-mRNA-1
chr7_3 exon 18698929 18699612 18698929 ID=Msa1095670-mRNA-1:exon:4064;Parent=Msa1095670-mRNA-1
chr7_3 exon 18699732 18700302 18699732 ID=Msa1095670-mRNA-1:exon:4065;Parent=Msa1095670-mRNA-1
chr7_3 exon 18700403 18700506 18700403 ID=Msa1095670-mRNA-1:exon:4066;Parent=Msa1095670-mRNA-1
chr7_3 exon 18700708 18700936 18700708 ID=Msa1095670-mRNA-1:exon:4067;Parent=Msa1095670-mRNA-1
chr7_3 exon 18701024 18701260 18701024 ID=Msa1095670-mRNA-1:exon:4068;Parent=Msa1095670-mRNA-1
chr7_3 CDS 18698125 18698210 18698125 ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3 CDS 18698460 18698508 18698460 ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3 CDS 18698652 18698689 18698652 ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3 CDS 18698929 18699612 18698929 ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3 CDS 18699732 18700302 18699732 ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3 CDS 18700403 18700506 18700403 ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3 CDS 18700708 18700936 18700708 ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
chr7_3 CDS 18701024 18701260 18701024 ID=Msa1095670-mRNA-1:cds;Parent=Msa1095670-mRNA-1
Gene Sequence

>Msa1095670

ATGAGTTATGATAATAATAGATGCATGGGAGTGGTGGATGTTGAGGGTTTCCAAGCAATCTGTGTTGACAGTTTGGGAGTGCTTTGCTTGCTTACCCAACCTATGGAGTTGGAATCCCCAGGAGTTTTTGAGGAGTGTGAACCTGTAGTGGTGGGGGCTAGTGTGATGCGTGGATTGATGGATTTGAATATAGACAACATTGATGGTGAAGGTGTCAATGTAACTCATGATGATGGGGAGTGTTCTGATAGCGATGCAAACGACAATGACACTGCTAGTGACGATTTGGATGAAAATTCAAACAGCTTCAATGAATCAACACACTCAGATCAAAATCCAAACGAATCTTACTTAATTGATGATGTAGACAATATTGTGAAGATGGATATGTTTAACTTGAAGAATGAAGATGTTTCGAAGTTGCAATTTCGTAATCTTGAAGTTGCGTACTCATTTTATTGTTGGTTTGCAAAGATTAATGGTTTTGCCGTCCGCAAAGGTCACGTTATTAAAGATAAGAATGGATATGTTGTTCAACAAACTTTTGTGTGTAATCTAGAAGGATTTAGGTATGACAGAGGGTTAACATCAGAGAAACGCAAGCGTGGTCCAAGACACGAAACCAGGTGTGGTTGTGGCGTGAAATTTCGAGTGCATATTGATATAAATTCAGGTCGTTGGTACATCACACTTTTCAGTTATGAGCACAACCATGATATGTTAACAGAGAAGGATTGCGGGTTGTTGGCTGCTCACAGGAAACTGACAAAGTCAGATAAGATTCAAATCGATAACTGTGGCAATGCTGGAATAAAGGTTACTCAAATGATTGGTGCATTTGCAAATGCTGCTGGTGGTCCTTTGATGTTTGTTGCGCACACTGTTGATGCTGGTGGTAGGTTACAAAACTTATTCTGGAGCGATGGTGAAAGTCAAAAGAATTATGAAATCTTTGGCGATGTGCTTGCCTTTGATGCCACCTACAAGAAACATAAGTACAAATGTCCTTTTGACGTGTTTTCTGGTGTTAATCACCATAACCAAACAATCATTTTTGCTACTTCCATAGTCTCTAATGAGGTTGAAGGGACATATGTTTGGTTGTTGGAACAGTTTTTGGCTGCAATGAAAGGCAAGGCACCAATTTCTGTAATAACAGACGGTGATTTAGCTATAAGGAATGCCATCAAGCAAGTGTTTCCCAAAAGTTATCATAGATTATGTGCGTGGGATCTACTTCGCAATGCAATGTCCAACATTGGTATTGCAGATTTCACTCCTTATTTAAAAAAAAAATGTATGTTTGGTGATCACGAAGTATGGAAATTTGAAAAACTATTGAATGAAATGGTAATTGAGTTTGGCCTGGAAGAAAACAGTTGGATCAATGAGATGTTTGAGAAAAGGAATATGTGGGCAACATCTCATTTCCACCAGTGTGTAGAATATTTTCGATTTAGAGAGGTTCAAGCTGATCACCAATCTCAATATGGGAAGGCAGTGTTGCAGACCAGTCTAAGGTCGCTCGAGAGAATGGAATCTATTGGGATCCCTTGTGAGCATATTGTGGCGGTGCTAGTATATCTTGATTTTGCTGATTTCCCTAAGTATCTTGTGCTGAATCGTTGGTCACAATTTGCAAAGGAGTCTATCCGTGGAAACTATCAAGATGGTTCACACTACTGGGATTCACATTTGGTTGCGAGACACGCCAATTTGGTGAATCTTAGTAAGGAAGTTTCTGATTTGGCATATCAGGATAATTCACATGTTCCAGTGGACATGGAAAACATACTCAACCCTGTATGTTCAAGAAGCACGGGATGTGGCCCCAGCGGTAATAGTACACCTAGAAGGCATAGGCGGATACATACATGTGGTAGATGTGGTGCAATCGGTCACAACAGAAGATGTTGTCCTACCTTGACTGAAGTAGGAGACATGGGTGCGGGTGGTTCTCTTCAATCACGATTTGTACGTTTAAGCGAGGATGTTTAA
Protein sequence

>Msa1095670

MSYDNNRCMGVVDVEGFQAICVDSLGVLCLLTQPMELESPGVFEECEPVVVGASVMRGLMDLNIDNIDGEGVNVTHDDGECSDSDANDNDTASDDLDENSNSFNESTHSDQNPNESYLIDDVDNIVKMDMFNLKNEDVSKLQFRNLEVAYSFYCWFAKINGFAVRKGHVIKDKNGYVVQQTFVCNLEGFRYDRGLTSEKRKRGPRHETRCGCGVKFRVHIDINSGRWYITLFSYEHNHDMLTEKDCGLLAAHRKLTKSDKIQIDNCGNAGIKVTQMIGAFANAAGGPLMFVAHTVDAGGRLQNLFWSDGESQKNYEIFGDVLAFDATYKKHKYKCPFDVFSGVNHHNQTIIFATSIVSNEVEGTYVWLLEQFLAAMKGKAPISVITDGDLAIRNAIKQVFPKSYHRLCAWDLLRNAMSNIGIADFTPYLKKKCMFGDHEVWKFEKLLNEMVIEFGLEENSWINEMFEKRNMWATSHFHQCVEYFRFREVQADHQSQYGKAVLQTSLRSLERMESIGIPCEHIVAVLVYLDFADFPKYLVLNRWSQFAKESIRGNYQDGSHYWDSHLVARHANLVNLSKEVSDLAYQDNSHVPVDMENILNPVCSRSTGCGPSGNSTPRRHRRIHTCGRCGAIGHNRRCCPTLTEVGDMGAGGSLQSRFVRLSEDV*