Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011610 | GAU44138.1 | 30.352 | 369 | 146 | 9 | 24 | 291 | 60 | 418 | 1.09e-33 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011610 | A0A2Z6NHZ9 | 30.352 | 369 | 146 | 9 | 24 | 291 | 60 | 418 | 5.21e-34 | 140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0735080 | Msa1011610 | 0.801129 | 1.041780e-48 | -8.615850e-47 |
| Msa1011600 | Msa1011610 | 0.839081 | 1.960693e-57 | -8.615850e-47 |
| Msa1011610 | Msa1095670 | 0.800445 | 1.436727e-48 | -8.615850e-47 |
| Msa1011610 | Msa1095690 | 0.893063 | 8.904003e-75 | -8.615850e-47 |
| Msa1011610 | Msa1146110 | 0.801650 | 8.148432e-49 | -8.615850e-47 |
| Msa1011610 | Msa1273230 | 0.801151 | 1.030866e-48 | -8.615850e-47 |
| Msa1011610 | Msa1419030 | 0.801409 | 9.127616e-49 | -8.615850e-47 |
| Msa0549910 | Msa1011610 | 0.810107 | 1.358278e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011610 | MtrunA17_Chr0c01g0489381 | 31.864 | 295 | 146 | 12 | 23 | 291 | 26 | 291 | 5.87e-21 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTGTAGTCACTGTTAA+AGG | 0.166906 | 7_1:+16228071 | None:intergenic |
| TAGAAATAATAACGGCTTAA+TGG | 0.191026 | 7_1:-16227516 | Msa1011610:CDS |
| GATTACCCTTTGATCGATTA+AGG | 0.213874 | 7_1:-16226609 | None:intergenic |
| GTTCCTCTCAACTTTGAAAA+TGG | 0.240069 | 7_1:+16227073 | None:intergenic |
| TTTGGGTACAATCAATATTT+CGG | 0.277077 | 7_1:-16228268 | Msa1011610:CDS |
| ACCATCACCCAAGGTCTTAT+AGG | 0.345050 | 7_1:+16228116 | None:intergenic |
| AAATGATTAAACATTGCATA+AGG | 0.361087 | 7_1:-16228476 | Msa1011610:CDS |
| GACAAAGGAAAGCTTTCATT+TGG | 0.364399 | 7_1:-16228144 | Msa1011610:CDS |
| GACCTCTTCAGACATGAAAC+TGG | 0.399396 | 7_1:-16227240 | Msa1011610:CDS |
| ACAAAGTCTCCTCTTGTAAC+TGG | 0.412827 | 7_1:+16228201 | None:intergenic |
| CTCTTGTAGTCACTGTTAAA+GGG | 0.413889 | 7_1:+16228072 | None:intergenic |
| GAAACACATAAGCACAAATT+CGG | 0.443902 | 7_1:+16227204 | None:intergenic |
| GTCAAGGGTGGTGTTGCTAT+TGG | 0.449199 | 7_1:-16227554 | Msa1011610:intron |
| GGCAAAAGAAACACAGGGTC+AGG | 0.450939 | 7_1:-16228328 | Msa1011610:CDS |
| AATCAATATTTCGGATATTG+AGG | 0.451916 | 7_1:-16228259 | Msa1011610:CDS |
| AATGATTAAACATTGCATAA+GGG | 0.456866 | 7_1:-16228475 | Msa1011610:CDS |
| GTTCTGCTGTCTTCCACATC+AGG | 0.461767 | 7_1:+16228375 | None:intergenic |
| GGTGAATCCTATAAGACCTT+GGG | 0.464616 | 7_1:-16228123 | Msa1011610:CDS |
| CATGTCTGAAGAGGTCTTGA+AGG | 0.472140 | 7_1:+16227247 | None:intergenic |
| CACAAATTCGGATCTCTACA+TGG | 0.492545 | 7_1:+16227216 | None:intergenic |
| ATGCTTAGAACTTTCATCTA+CGG | 0.494650 | 7_1:+16228233 | None:intergenic |
| TGACATTCTTGATGCTATTG+AGG | 0.496079 | 7_1:-16228971 | Msa1011610:intron |
| TGAATGCATGTGTCCGGGAC+TGG | 0.505599 | 7_1:-16227030 | Msa1011610:CDS |
| AAAACAATACACAAGGGAAT+GGG | 0.506699 | 7_1:-16228303 | Msa1011610:CDS |
| ACTAGCCTTAATCGATCAAA+GGG | 0.508721 | 7_1:+16226604 | None:intergenic |
| TACTAGCCTTAATCGATCAA+AGG | 0.522930 | 7_1:+16226603 | None:intergenic |
| GTCCAGCTCCAGATAACAAA+AGG | 0.525163 | 7_1:-16228176 | Msa1011610:CDS |
| TAAAACGCATGCAAAGCCTC+TGG | 0.534043 | 7_1:+16226639 | None:intergenic |
| TGGTGAATCCTATAAGACCT+TGG | 0.549812 | 7_1:-16228124 | Msa1011610:CDS |
| GCAGAAGATGAGTACTAAAG+TGG | 0.552615 | 7_1:-16228523 | Msa1011610:intron |
| TAACGGCTTAATGGTTCCAA+AGG | 0.570028 | 7_1:-16227507 | Msa1011610:intron |
| CTGTGGCTATTCTCCTGATG+TGG | 0.572384 | 7_1:-16228388 | Msa1011610:CDS |
| TGTCAACAAAGTCACTCGCT+TGG | 0.575405 | 7_1:-16228349 | Msa1011610:CDS |
| TCCTATAAGACCTTGGGTGA+TGG | 0.580463 | 7_1:-16228117 | Msa1011610:CDS |
| TCTCTAGACACTACCAGTCC+CGG | 0.581259 | 7_1:+16227017 | None:intergenic |
| ATAAAGGTTGATGTTGCTAG+AGG | 0.591983 | 7_1:-16226669 | Msa1011610:intron |
| CTCCAAACCTGAAAATAGCA+AGG | 0.599038 | 7_1:-16228421 | Msa1011610:CDS |
| CAAGAGAGGTGCAACTGCAA+AGG | 0.601725 | 7_1:-16228055 | Msa1011610:intron |
| GCGAGTGACTTTGTTGACAG+TGG | 0.605984 | 7_1:+16228353 | None:intergenic |
| TGCTAGAGGTTCAACTCCAG+AGG | 0.607670 | 7_1:-16226655 | Msa1011610:CDS |
| GTCCAGTTTCATGTCTGAAG+AGG | 0.607856 | 7_1:+16227238 | None:intergenic |
| TCGCTTGGCAAAAGAAACAC+AGG | 0.611662 | 7_1:-16228334 | Msa1011610:CDS |
| TACTAAAGTGGATAACATAG+AGG | 0.626634 | 7_1:-16228511 | Msa1011610:CDS |
| ACAGAGTTCACCATCACCCA+AGG | 0.639539 | 7_1:+16228107 | None:intergenic |
| TTTAACAGTGACTACAAGAG+AGG | 0.662162 | 7_1:-16228069 | Msa1011610:CDS |
| AAAAGGCTGAACATTGACAA+AGG | 0.665897 | 7_1:-16228159 | Msa1011610:CDS |
| CAGTTCAAAACAAGTTACAA+TGG | 0.670294 | 7_1:-16228995 | Msa1011610:CDS |
| AGCAAGGTTCATAGCAACTG+TGG | 0.690961 | 7_1:-16228405 | Msa1011610:CDS |
| GGGACTGGTAGTGTCTAGAG+AGG | 0.699395 | 7_1:-16227015 | Msa1011610:intron |
| CGCTTGGCAAAAGAAACACA+GGG | 0.711638 | 7_1:-16228333 | Msa1011610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTATGTTTAAAACATA+GGG | + | chr7_1:16228780-16228799 | None:intergenic | 10.0% |
| !!! | TTAATTTATGTTTAAAACAT+AGG | + | chr7_1:16228781-16228800 | None:intergenic | 10.0% |
| !! | TTGATTTAAAAACAATTTAA+AGG | - | chr7_1:16228936-16228955 | Msa1011610:intron | 10.0% |
| !! | ATTATTACTAAAAGAAATAC+CGG | - | chr7_1:16226747-16226766 | Msa1011610:intron | 15.0% |
| !! | TCATAAAATATGATTTACAT+CGG | - | chr7_1:16226838-16226857 | Msa1011610:intron | 15.0% |
| !!! | AATGCTTTTAGAAATAATAA+CGG | - | chr7_1:16228159-16228178 | Msa1011610:CDS | 15.0% |
| !! | AATACAAATATATTGTTCAT+AGG | + | chr7_1:16228531-16228550 | None:intergenic | 15.0% |
| !!! | AAGTTTTATGGTTATATTAT+AGG | - | chr7_1:16228583-16228602 | Msa1011610:intron | 15.0% |
| !!! | AGTTTTATGGTTATATTATA+GGG | - | chr7_1:16228584-16228603 | Msa1011610:intron | 15.0% |
| !!! | TACTACTGATTATTTAATAA+AGG | - | chr7_1:16228998-16229017 | Msa1011610:CDS | 15.0% |
| !! | TCTGCACATATAAAAAAAAA+AGG | + | chr7_1:16227145-16227164 | None:intergenic | 20.0% |
| !! | AAATGATTAAACATTGCATA+AGG | - | chr7_1:16227207-16227226 | Msa1011610:intron | 20.0% |
| !! | AATGATTAAACATTGCATAA+GGG | - | chr7_1:16227208-16227227 | Msa1011610:intron | 20.0% |
| !!! | AATTGTTACTATAATCCTTT+TGG | - | chr7_1:16227766-16227785 | Msa1011610:intron | 20.0% |
| !!! | TTTGTTTTTTCATTATTGTC+TGG | + | chr7_1:16228358-16228377 | None:intergenic | 20.0% |
| !!! | GTTATATAACACAAGTTTTA+TGG | - | chr7_1:16228571-16228590 | Msa1011610:intron | 20.0% |
| !! | TACATAGATAATACTAATGA+TGG | - | chr7_1:16228835-16228854 | Msa1011610:intron | 20.0% |
| ! | GTTAAAGAATAAACTAGAAC+CGG | + | chr7_1:16226769-16226788 | None:intergenic | 25.0% |
| ! | CTATCACTTAGCTTATATTT+AGG | + | chr7_1:16226898-16226917 | None:intergenic | 25.0% |
| ! | AAATATAAGCTAAGTGATAG+AGG | - | chr7_1:16226898-16226917 | Msa1011610:intron | 25.0% |
| ! | TTATTAAGAAAAAGCCATAC+TGG | - | chr7_1:16227081-16227100 | Msa1011610:CDS | 25.0% |
| !! | AAAAAAAGGCATGAACATAA+AGG | + | chr7_1:16227131-16227150 | None:intergenic | 25.0% |
| ! | TTTGGGTACAATCAATATTT+CGG | - | chr7_1:16227415-16227434 | Msa1011610:intron | 25.0% |
| ! | AATCAATATTTCGGATATTG+AGG | - | chr7_1:16227424-16227443 | Msa1011610:intron | 25.0% |
| ! | AAAAAAATACCAGTTACAAG+AGG | - | chr7_1:16227473-16227492 | Msa1011610:intron | 25.0% |
| ! | GAAGTCATAAGCAAAAATTA+TGG | + | chr7_1:16227663-16227682 | None:intergenic | 25.0% |
| ! | TAGAAATAATAACGGCTTAA+TGG | - | chr7_1:16228167-16228186 | Msa1011610:CDS | 25.0% |
| !! | TGTCTTGTTAAACATATTTC+AGG | - | chr7_1:16228409-16228428 | Msa1011610:CDS | 25.0% |
| ! | AAGCCATAAATCAACTAATA+TGG | - | chr7_1:16228799-16228818 | Msa1011610:intron | 25.0% |
| !! | ACTCCATATTAGTTGATTTA+TGG | + | chr7_1:16228805-16228824 | None:intergenic | 25.0% |
| ! | TAAATCAAATTATACCGTGA+AGG | + | chr7_1:16228924-16228943 | None:intergenic | 25.0% |
| !!! | CATTGTAACTTGTTTTGAAC+TGG | + | chr7_1:16226690-16226709 | None:intergenic | 30.0% |
| CAGTTCAAAACAAGTTACAA+TGG | - | chr7_1:16226688-16226707 | Msa1011610:intron | 30.0% | |
| TATGTTGAATAGCATATGAG+AGG | + | chr7_1:16226929-16226948 | None:intergenic | 30.0% | |
| ACAATTCCTTCCTATATACA+AGG | - | chr7_1:16226956-16226975 | Msa1011610:intron | 30.0% | |
| TTATTCACCTCCTTGTATAT+AGG | + | chr7_1:16226969-16226988 | None:intergenic | 30.0% | |
| CAAGTACTCCTATAATAACA+TGG | - | chr7_1:16227036-16227055 | Msa1011610:CDS | 30.0% | |
| TACTAAAGTGGATAACATAG+AGG | - | chr7_1:16227172-16227191 | Msa1011610:intron | 30.0% | |
| TCAGGAAAAAACAATACACA+AGG | - | chr7_1:16227373-16227392 | Msa1011610:intron | 30.0% | |
| CAGGAAAAAACAATACACAA+GGG | - | chr7_1:16227374-16227393 | Msa1011610:intron | 30.0% | |
| AAAAACAATACACAAGGGAA+TGG | - | chr7_1:16227379-16227398 | Msa1011610:intron | 30.0% | |
| AAAACAATACACAAGGGAAT+GGG | - | chr7_1:16227380-16227399 | Msa1011610:intron | 30.0% | |
| AATGGGAATGCTGAAAAATT+TGG | - | chr7_1:16227397-16227416 | Msa1011610:intron | 30.0% | |
| ATGGGAATGCTGAAAAATTT+GGG | - | chr7_1:16227398-16227417 | Msa1011610:intron | 30.0% | |
| ATGCTTAGAACTTTCATCTA+CGG | + | chr7_1:16227453-16227472 | None:intergenic | 30.0% | |
| CGTAAAATAGACTTACCAAA+AGG | + | chr7_1:16227784-16227803 | None:intergenic | 30.0% | |
| ! | CGAGAATAATATGCATTTTC+AGG | - | chr7_1:16227802-16227821 | Msa1011610:intron | 30.0% |
| TGAACTTAGTATCCTGTATT+TGG | - | chr7_1:16227843-16227862 | Msa1011610:intron | 30.0% | |
| TCAAAAGACAAGCTTAGAAT+TGG | - | chr7_1:16228039-16228058 | Msa1011610:intron | 30.0% | |
| TGGTGTAAATATGTTACCTT+TGG | + | chr7_1:16228195-16228214 | None:intergenic | 30.0% | |
| ! | TTCATTATTGTCTGGTTTAG+TGG | + | chr7_1:16228350-16228369 | None:intergenic | 30.0% |
| GAAACACATAAGCACAAATT+CGG | + | chr7_1:16228482-16228501 | None:intergenic | 30.0% | |
| ! | TTTTCGTTCTCATGCTTTTA+TGG | - | chr7_1:16228549-16228568 | Msa1011610:intron | 30.0% |
| ! | ATACCATTTTCAAAGTTGAG+AGG | - | chr7_1:16228607-16228626 | Msa1011610:intron | 30.0% |
| ! | ACAACATTTGCAAGTTTTTG+TGG | - | chr7_1:16228885-16228904 | Msa1011610:intron | 30.0% |
| !!! | ACTTGTTTTGAACTGGTTTC+AGG | + | chr7_1:16226683-16226702 | None:intergenic | 35.0% |
| TGACATTCTTGATGCTATTG+AGG | - | chr7_1:16226712-16226731 | Msa1011610:intron | 35.0% | |
| TATAAGCTAAGTGATAGAGG+AGG | - | chr7_1:16226901-16226920 | Msa1011610:intron | 35.0% | |
| ATTCCTTCCTATATACAAGG+AGG | - | chr7_1:16226959-16226978 | Msa1011610:intron | 35.0% | |
| GTACTCCTATAATAACATGG+AGG | - | chr7_1:16227039-16227058 | Msa1011610:CDS | 35.0% | |
| ACTAATTGCAAGAACCAGTA+TGG | + | chr7_1:16227098-16227117 | None:intergenic | 35.0% | |
| !!! | CTATTTTCAGGTTTGGAGTT+AGG | + | chr7_1:16227260-16227279 | None:intergenic | 35.0% |
| !!! | AACCTTGCTATTTTCAGGTT+TGG | + | chr7_1:16227267-16227286 | None:intergenic | 35.0% |
| !!! | CTATGAACCTTGCTATTTTC+AGG | + | chr7_1:16227272-16227291 | None:intergenic | 35.0% |
| !! | ATGTTCAGCCTTTTGTTATC+TGG | + | chr7_1:16227518-16227537 | None:intergenic | 35.0% |
| AAAAGGCTGAACATTGACAA+AGG | - | chr7_1:16227524-16227543 | Msa1011610:CDS | 35.0% | |
| GACAAAGGAAAGCTTTCATT+TGG | - | chr7_1:16227539-16227558 | Msa1011610:CDS | 35.0% | |
| CTCTTGTAGTCACTGTTAAA+GGG | + | chr7_1:16227614-16227633 | None:intergenic | 35.0% | |
| TCTCTTGTAGTCACTGTTAA+AGG | + | chr7_1:16227615-16227634 | None:intergenic | 35.0% | |
| TTTAACAGTGACTACAAGAG+AGG | - | chr7_1:16227614-16227633 | Msa1011610:intron | 35.0% | |
| ACTCAAACACAGAAGGAATT+AGG | + | chr7_1:16227713-16227732 | None:intergenic | 35.0% | |
| ! | TAGTATCCTGTATTTGGAGT+TGG | - | chr7_1:16227849-16227868 | Msa1011610:intron | 35.0% |
| AATCTACCAACTCCAAATAC+AGG | + | chr7_1:16227858-16227877 | None:intergenic | 35.0% | |
| GAAGGACACAATAATAACGT+CGG | - | chr7_1:16227969-16227988 | Msa1011610:intron | 35.0% | |
| ! | TTGTCTTTTGATCATTCTCC+AGG | + | chr7_1:16228030-16228049 | None:intergenic | 35.0% |
| !! | ATTGGAGCACATTCTAAAAC+TGG | - | chr7_1:16228057-16228076 | Msa1011610:CDS | 35.0% |
| !!! | CTTTTGACTTTTGTTGCTCT+TGG | + | chr7_1:16228090-16228109 | None:intergenic | 35.0% |
| ACACTAAACACACGCTTAAA+TGG | + | chr7_1:16228215-16228234 | None:intergenic | 35.0% | |
| ATTTAAGCGTGTGTTTAGTG+TGG | - | chr7_1:16228214-16228233 | Msa1011610:CDS | 35.0% | |
| ! | TAGTGTGGAGTTTGAAATTG+TGG | - | chr7_1:16228229-16228248 | Msa1011610:CDS | 35.0% |
| CCACGACTAAAAAGTTCATT+GGG | + | chr7_1:16228273-16228292 | None:intergenic | 35.0% | |
| TCCACGACTAAAAAGTTCAT+TGG | + | chr7_1:16228274-16228293 | None:intergenic | 35.0% | |
| ! | TTATTGTCTGGTTTAGTGGT+GGG | + | chr7_1:16228346-16228365 | None:intergenic | 35.0% |
| ! | ATTATTGTCTGGTTTAGTGG+TGG | + | chr7_1:16228347-16228366 | None:intergenic | 35.0% |
| TTTCAAGAAGACTTCAACTC+AGG | - | chr7_1:16228498-16228517 | Msa1011610:CDS | 35.0% | |
| TTCAAGAAGACTTCAACTCA+GGG | - | chr7_1:16228499-16228518 | Msa1011610:CDS | 35.0% | |
| ! | GTTCCTCTCAACTTTGAAAA+TGG | + | chr7_1:16228613-16228632 | None:intergenic | 35.0% |
| ! | TGATTTTGAATGCATGTGTC+CGG | - | chr7_1:16228647-16228666 | Msa1011610:intron | 35.0% |
| ! | GCTTATGTTTTCGTCATGAA+AGG | - | chr7_1:16228744-16228763 | Msa1011610:intron | 35.0% |
| TCAAATTATACCGTGAAGGA+TGG | + | chr7_1:16228920-16228939 | None:intergenic | 35.0% | |
| !! | ATAAAGGTTGATGTTGCTAG+AGG | - | chr7_1:16229014-16229033 | Msa1011610:CDS | 35.0% |
| TCACCTCCTTGTATATAGGA+AGG | + | chr7_1:16226965-16226984 | None:intergenic | 40.0% | |
| GCACACCTCCATGTTATTAT+AGG | + | chr7_1:16227047-16227066 | None:intergenic | 40.0% | |
| GCAGAAGATGAGTACTAAAG+TGG | - | chr7_1:16227160-16227179 | Msa1011610:intron | 40.0% | |
| CTCCAAACCTGAAAATAGCA+AGG | - | chr7_1:16227262-16227281 | Msa1011610:intron | 40.0% | |
| ACAAAGTCTCCTCTTGTAAC+TGG | + | chr7_1:16227485-16227504 | None:intergenic | 40.0% | |
| TGGTGAATCCTATAAGACCT+TGG | - | chr7_1:16227559-16227578 | Msa1011610:intron | 40.0% | |
| GGTGAATCCTATAAGACCTT+GGG | - | chr7_1:16227560-16227579 | Msa1011610:intron | 40.0% | |
| !! | CGTCTCTGACTTTTGATTGA+AGG | - | chr7_1:16227951-16227970 | Msa1011610:intron | 40.0% |
| TTTGATCATTCTCCAGGTGA+TGG | + | chr7_1:16228024-16228043 | None:intergenic | 40.0% | |
| ! | ACTTTTGTTGCTCTTGGAGA+TGG | + | chr7_1:16228084-16228103 | None:intergenic | 40.0% |
| TAACGGCTTAATGGTTCCAA+AGG | - | chr7_1:16228176-16228195 | Msa1011610:CDS | 40.0% | |
| !! | CCCAATGAACTTTTTAGTCG+TGG | - | chr7_1:16228270-16228289 | Msa1011610:CDS | 40.0% |
| CACAAATTCGGATCTCTACA+TGG | + | chr7_1:16228470-16228489 | None:intergenic | 40.0% | |
| ! | GATTTTGAATGCATGTGTCC+GGG | - | chr7_1:16228648-16228667 | Msa1011610:intron | 40.0% |
| TCGTCATGAAAGGTTTACTG+TGG | - | chr7_1:16228754-16228773 | Msa1011610:intron | 40.0% | |
| ! | AATACTAATGATGGCGCTCA+AGG | - | chr7_1:16228844-16228863 | Msa1011610:intron | 40.0% |
| AATTATACCGTGAAGGATGG+TGG | + | chr7_1:16228917-16228936 | None:intergenic | 40.0% | |
| ! | AGGCTTTGCATGCGTTTTAT+GGG | - | chr7_1:16229048-16229067 | Msa1011610:CDS | 40.0% |
| AGCAAGGTTCATAGCAACTG+TGG | - | chr7_1:16227278-16227297 | Msa1011610:intron | 45.0% | |
| TGTCAACAAAGTCACTCGCT+TGG | - | chr7_1:16227334-16227353 | Msa1011610:intron | 45.0% | |
| TCGCTTGGCAAAAGAAACAC+AGG | - | chr7_1:16227349-16227368 | Msa1011610:intron | 45.0% | |
| CGCTTGGCAAAAGAAACACA+GGG | - | chr7_1:16227350-16227369 | Msa1011610:intron | 45.0% | |
| GTCCAGCTCCAGATAACAAA+AGG | - | chr7_1:16227507-16227526 | Msa1011610:intron | 45.0% | |
| !! | AGCCTTTTGTTATCTGGAGC+TGG | + | chr7_1:16227512-16227531 | None:intergenic | 45.0% |
| TCCTATAAGACCTTGGGTGA+TGG | - | chr7_1:16227566-16227585 | Msa1011610:intron | 45.0% | |
| ! | ACCATCACCCAAGGTCTTAT+AGG | + | chr7_1:16227570-16227589 | None:intergenic | 45.0% |
| ! | GAGTGCTACTCAAACACAGA+AGG | + | chr7_1:16227720-16227739 | None:intergenic | 45.0% |
| ! | TTCTCCAGGTGATGGTGTAA+AGG | + | chr7_1:16228016-16228035 | None:intergenic | 45.0% |
| TTCTCCAATTGCTCGTGTCA+AGG | - | chr7_1:16228113-16228132 | Msa1011610:CDS | 45.0% | |
| TCTCCAATTGCTCGTGTCAA+GGG | - | chr7_1:16228114-16228133 | Msa1011610:CDS | 45.0% | |
| ! | ACGCACATCTGTGCAGATTT+TGG | + | chr7_1:16228314-16228333 | None:intergenic | 45.0% |
| CATGTCTGAAGAGGTCTTGA+AGG | + | chr7_1:16228439-16228458 | None:intergenic | 45.0% | |
| GACCTCTTCAGACATGAAAC+TGG | - | chr7_1:16228443-16228462 | Msa1011610:CDS | 45.0% | |
| GTCCAGTTTCATGTCTGAAG+AGG | + | chr7_1:16228448-16228467 | None:intergenic | 45.0% | |
| TAAAACGCATGCAAAGCCTC+TGG | + | chr7_1:16229047-16229066 | None:intergenic | 45.0% | |
| ! | GAGGCTTTGCATGCGTTTTA+TGG | - | chr7_1:16229047-16229066 | Msa1011610:CDS | 45.0% |
| CTGTGGCTATTCTCCTGATG+TGG | - | chr7_1:16227295-16227314 | Msa1011610:intron | 50.0% | |
| GTTCTGCTGTCTTCCACATC+AGG | + | chr7_1:16227311-16227330 | None:intergenic | 50.0% | |
| GCGAGTGACTTTGTTGACAG+TGG | + | chr7_1:16227333-16227352 | None:intergenic | 50.0% | |
| GGCAAAAGAAACACAGGGTC+AGG | - | chr7_1:16227355-16227374 | Msa1011610:intron | 50.0% | |
| ACAGAGTTCACCATCACCCA+AGG | + | chr7_1:16227579-16227598 | None:intergenic | 50.0% | |
| ! | CAAGAGAGGTGCAACTGCAA+AGG | - | chr7_1:16227628-16227647 | Msa1011610:intron | 50.0% |
| CGTCGGCAACAATGTGTAGA+AGG | - | chr7_1:16227986-16228005 | Msa1011610:intron | 50.0% | |
| CAGACCTTTACACCATCACC+TGG | - | chr7_1:16228009-16228028 | Msa1011610:intron | 50.0% | |
| !! | GTCAAGGGTGGTGTTGCTAT+TGG | - | chr7_1:16228129-16228148 | Msa1011610:CDS | 50.0% |
| ! | TGTCTGGTTTAGTGGTGGGA+AGG | + | chr7_1:16228342-16228361 | None:intergenic | 50.0% |
| TCTCTAGACACTACCAGTCC+CGG | + | chr7_1:16228669-16228688 | None:intergenic | 50.0% | |
| ! | TGATGGCGCTCAAGGTATCT+TGG | - | chr7_1:16228852-16228871 | Msa1011610:intron | 50.0% |
| GTGTCTACCACCATCCTTCA+CGG | - | chr7_1:16228907-16228926 | Msa1011610:intron | 50.0% | |
| TGCTAGAGGTTCAACTCCAG+AGG | - | chr7_1:16229028-16229047 | Msa1011610:CDS | 50.0% | |
| CCACCCTTGACACGAGCAAT+TGG | + | chr7_1:16228120-16228139 | None:intergenic | 55.0% | |
| CCAATTGCTCGTGTCAAGGG+TGG | - | chr7_1:16228117-16228136 | Msa1011610:CDS | 55.0% | |
| TGAATGCATGTGTCCGGGAC+TGG | - | chr7_1:16228653-16228672 | Msa1011610:intron | 55.0% | |
| ! | GGGACTGGTAGTGTCTAGAG+AGG | - | chr7_1:16228668-16228687 | Msa1011610:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 16226611 | 16229094 | 16226611 | ID=Msa1011610;Name=Msa1011610 |
| chr7_1 | mRNA | 16226611 | 16229094 | 16226611 | ID=Msa1011610-mRNA-1;Parent=Msa1011610;Name=Msa1011610-mRNA-1;_AED=0.37;_eAED=0.47;_QI=0|0|0|0.83|1|1|6|0|295 |
| chr7_1 | exon | 16228972 | 16229094 | 16228972 | ID=Msa1011610-mRNA-1:exon:4167;Parent=Msa1011610-mRNA-1 |
| chr7_1 | exon | 16228056 | 16228541 | 16228056 | ID=Msa1011610-mRNA-1:exon:4166;Parent=Msa1011610-mRNA-1 |
| chr7_1 | exon | 16227508 | 16227570 | 16227508 | ID=Msa1011610-mRNA-1:exon:4165;Parent=Msa1011610-mRNA-1 |
| chr7_1 | exon | 16227219 | 16227274 | 16227219 | ID=Msa1011610-mRNA-1:exon:4164;Parent=Msa1011610-mRNA-1 |
| chr7_1 | exon | 16227016 | 16227100 | 16227016 | ID=Msa1011610-mRNA-1:exon:4163;Parent=Msa1011610-mRNA-1 |
| chr7_1 | exon | 16226611 | 16226685 | 16226611 | ID=Msa1011610-mRNA-1:exon:4162;Parent=Msa1011610-mRNA-1 |
| chr7_1 | CDS | 16228972 | 16229094 | 16228972 | ID=Msa1011610-mRNA-1:cds;Parent=Msa1011610-mRNA-1 |
| chr7_1 | CDS | 16228056 | 16228541 | 16228056 | ID=Msa1011610-mRNA-1:cds;Parent=Msa1011610-mRNA-1 |
| chr7_1 | CDS | 16227508 | 16227570 | 16227508 | ID=Msa1011610-mRNA-1:cds;Parent=Msa1011610-mRNA-1 |
| chr7_1 | CDS | 16227219 | 16227274 | 16227219 | ID=Msa1011610-mRNA-1:cds;Parent=Msa1011610-mRNA-1 |
| chr7_1 | CDS | 16227016 | 16227100 | 16227016 | ID=Msa1011610-mRNA-1:cds;Parent=Msa1011610-mRNA-1 |
| chr7_1 | CDS | 16226611 | 16226685 | 16226611 | ID=Msa1011610-mRNA-1:cds;Parent=Msa1011610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
