AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1096910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1096910 MtrunA17_Chr7g0221471 92.045 176 13 1 1 175 1 176 4.77e-121 338
Msa1096910 MtrunA17_Chr7g0221501 93.750 176 10 1 1 175 1 176 4.40e-115 323
Msa1096910 MtrunA17_Chr3g0131601 54.545 154 55 5 1 145 33 180 2.90e-37 129
Msa1096910 MtrunA17_Chr8g0383591 54.054 111 51 0 40 150 135 245 3.49e-33 119
Msa1096910 MtrunA17_Chr2g0334031 45.161 124 68 0 1 124 68 191 1.39e-30 114
Msa1096910 MtrunA17_Chr4g0044871 44.776 134 43 3 1 106 22 152 5.17e-30 109
Msa1096910 MtrunA17_Chr2g0316931 54.082 98 44 1 28 124 8 105 6.14e-30 108
Msa1096910 MtrunA17_Chr6g0461941 53.691 149 52 4 31 163 2 149 6.58e-30 108
Msa1096910 MtrunA17_Chr4g0044881 75.410 61 15 0 46 106 110 170 1.97e-29 108
Msa1096910 MtrunA17_Chr4g0044911 78.947 57 12 0 50 106 96 152 3.13e-29 107
Msa1096910 MtrunA17_Chr4g0044901 78.947 57 12 0 50 106 96 152 3.15e-29 107
Msa1096910 MtrunA17_Chr4g0046161 59.770 87 32 2 21 106 30 114 3.94e-29 104
Msa1096910 MtrunA17_Chr8g0344961 47.788 113 52 2 41 150 115 223 6.14e-29 110
Msa1096910 MtrunA17_Chr4g0055761 75.385 65 15 1 46 109 141 205 8.99e-29 107
Msa1096910 MtrunA17_Chr1g0195151 54.902 102 36 2 12 106 35 133 1.21e-28 107
Msa1096910 MtrunA17_Chr8g0335331 70.149 67 19 1 44 109 119 185 2.72e-28 104
Msa1096910 MtrunA17_Chr4g0026881 50.000 114 49 4 20 128 66 176 2.90e-28 105
Msa1096910 MtrunA17_Chr2g0283171 64.384 73 25 1 43 114 56 128 3.49e-28 102
Msa1096910 MtrunA17_Chr5g0438801 54.945 91 41 0 16 106 17 107 3.63e-28 106
Msa1096910 MtrunA17_Chr8g0375031 54.737 95 39 2 43 135 120 212 4.02e-28 104
Msa1096910 MtrunA17_Chr2g0283181 66.667 75 23 2 42 114 141 215 5.44e-28 105
Msa1096910 MtrunA17_Chr8g0335311 57.143 84 34 2 50 132 96 178 3.83e-27 101
Msa1096910 MtrunA17_Chr4g0055781 57.831 83 31 2 43 124 95 174 8.34e-27 101
Msa1096910 MtrunA17_Chr2g0282651 72.131 61 17 0 46 106 66 126 1.61e-26 100
Msa1096910 MtrunA17_Chr2g0295421 70.968 62 18 0 46 107 92 153 3.05e-26 100
Msa1096910 MtrunA17_Chr5g0438831 73.770 61 16 0 46 106 42 102 4.20e-26 100
Msa1096910 MtrunA17_Chr3g0099871 73.770 61 16 0 46 106 23 83 5.48e-26 99.0
Msa1096910 MtrunA17_Chr8g0335321 49.515 103 43 4 8 109 62 156 5.86e-26 98.6
Msa1096910 MtrunA17_Chr2g0282621 70.492 61 18 0 46 106 11 71 9.66e-26 97.1
Msa1096910 MtrunA17_Chr4g0026931 53.608 97 42 2 33 128 116 210 1.19e-25 99.4
Msa1096910 MtrunA17_Chr7g0250731 72.581 62 16 1 49 109 60 121 1.30e-25 97.4
Msa1096910 MtrunA17_Chr7g0250721 72.581 62 16 1 49 109 60 121 1.87e-25 97.1
Msa1096910 MtrunA17_Chr4g0055801 69.118 68 20 1 43 109 147 214 2.29e-25 99.4
Msa1096910 MtrunA17_Chr1g0158971 53.535 99 37 4 50 141 115 211 2.89e-25 99.8
Msa1096910 MtrunA17_Chr1g0170531 64.384 73 25 1 49 120 88 160 3.07e-25 97.4
Msa1096910 MtrunA17_Chr7g0250711 70.968 62 17 1 49 109 59 120 3.62e-25 96.3
Msa1096910 MtrunA17_Chr3g0129421 55.172 116 42 2 40 145 160 275 3.79e-25 99.4
Msa1096910 MtrunA17_Chr1g0184081 66.667 66 21 1 42 106 13 78 4.82e-25 94.4
Msa1096910 MtrunA17_Chr1g0184071 48.958 96 44 2 15 105 30 125 5.36e-25 95.1
Msa1096910 MtrunA17_Chr1g0196781 51.064 94 39 2 50 136 152 245 5.68e-25 98.2
Msa1096910 MtrunA17_Chr2g0324131 67.213 61 20 0 50 110 218 278 1.27e-24 98.6
Msa1096910 MtrunA17_Chr3g0115631 75.439 57 14 0 50 106 150 206 1.28e-24 97.8
Msa1096910 MtrunA17_Chr5g0396911 71.429 56 16 0 50 105 112 167 1.92e-24 96.7
Msa1096910 MtrunA17_Chr1g0196871 71.186 59 16 1 49 106 15 73 3.44e-24 90.9
Msa1096910 MtrunA17_Chr3g0140161 63.636 66 24 0 42 107 35 100 4.16e-24 93.2
Msa1096910 MtrunA17_Chr5g0425561 61.644 73 26 1 36 106 157 229 4.68e-24 96.7
Msa1096910 MtrunA17_Chr8g0387801 40.411 146 55 5 50 164 107 251 4.97e-24 95.9
Msa1096910 MtrunA17_Chr8g0382491 52.083 96 42 2 33 124 94 189 1.15e-23 94.4
Msa1096910 MtrunA17_Chr2g0323171 45.745 94 51 0 47 140 62 155 1.90e-23 91.7
Msa1096910 MtrunA17_Chr1g0186731 61.194 67 25 1 41 106 12 78 2.25e-23 90.1
Msa1096910 MtrunA17_Chr8g0367911 69.643 56 17 0 50 105 44 99 2.90e-23 93.2
Msa1096910 MtrunA17_Chr3g0126321 67.857 56 18 0 50 105 113 168 2.95e-23 94.4
Msa1096910 MtrunA17_Chr5g0432821 51.282 78 38 0 29 106 103 180 4.28e-23 92.8
Msa1096910 MtrunA17_Chr7g0261101 57.895 76 31 1 32 106 2 77 4.91e-23 89.4
Msa1096910 MtrunA17_Chr6g0486701 65.000 60 21 0 48 107 42 101 6.89e-23 90.9
Msa1096910 MtrunA17_Chr1g0184031 51.724 87 39 2 28 111 60 146 7.64e-23 90.9
Msa1096910 MtrunA17_Chr7g0261151 55.844 77 33 1 32 107 2 78 8.76e-23 88.6
Msa1096910 MtrunA17_Chr7g0265851 60.811 74 23 1 44 117 18 85 1.46e-22 89.7
Msa1096910 MtrunA17_Chr5g0399441 47.423 97 44 1 46 135 24 120 1.49e-22 89.0
Msa1096910 MtrunA17_Chr4g0055951 51.220 82 40 0 43 124 67 148 1.60e-22 90.5
Msa1096910 MtrunA17_Chr7g0257911 60.606 66 26 0 50 115 31 96 1.94e-22 90.9
Msa1096910 MtrunA17_Chr8g0334801 57.143 77 33 0 48 124 50 126 2.08e-22 89.4
Msa1096910 MtrunA17_Chr2g0297331 65.000 60 20 1 49 107 13 72 4.53e-22 86.3
Msa1096910 MtrunA17_Chr1g0183981 62.687 67 23 2 46 111 72 137 7.72e-22 87.8
Msa1096910 MtrunA17_Chr4g0023411 61.667 60 23 0 47 106 62 121 7.98e-22 87.4
Msa1096910 MtrunA17_Chr7g0275841 34.722 144 67 3 36 154 5 146 8.83e-22 86.7
Msa1096910 MtrunA17_Chr5g0437371 67.857 56 18 0 50 105 66 121 1.06e-21 89.7
Msa1096910 MtrunA17_Chr1g0184061 48.077 104 42 4 5 105 39 133 1.10e-21 87.8
Msa1096910 MtrunA17_Chr1g0184011 59.701 67 26 1 46 111 80 146 1.10e-21 87.8
Msa1096910 MtrunA17_Chr3g0137174 64.912 57 20 0 50 106 8 64 1.14e-21 87.0
Msa1096910 MtrunA17_Chr7g0232261 63.934 61 22 0 46 106 57 117 1.42e-21 87.8
Msa1096910 MtrunA17_Chr4g0066931 64.286 56 20 0 50 105 53 108 1.43e-21 89.4
Msa1096910 MtrunA17_Chr5g0412641 67.857 56 18 0 50 105 46 101 1.62e-21 89.7
Msa1096910 MtrunA17_Chr2g0286161 64.286 56 20 0 50 105 50 105 1.95e-21 88.6
Msa1096910 MtrunA17_Chr8g0340311 53.165 79 37 0 46 124 43 121 1.99e-21 86.7
Msa1096910 MtrunA17_Chr2g0331231 55.224 67 30 0 41 107 32 98 2.43e-21 86.7
Msa1096910 MtrunA17_Chr8g0390091 65.000 60 21 0 48 107 35 94 2.62e-21 87.0
Msa1096910 MtrunA17_Chr3g0134161 43.119 109 57 4 23 130 18 122 3.43e-21 85.1
Msa1096910 MtrunA17_Chr5g0437671 65.517 58 20 0 50 107 85 142 3.49e-21 89.0
Msa1096910 MtrunA17_Chr4g0002631 64.912 57 20 0 50 106 8 64 4.05e-21 85.5
Msa1096910 MtrunA17_Chr7g0261181 57.955 88 30 2 50 136 13 94 4.22e-21 84.0
Msa1096910 MtrunA17_Chr1g0186671 65.517 58 19 1 50 106 19 76 4.55e-21 84.0
Msa1096910 MtrunA17_Chr7g0252381 66.071 56 19 0 50 105 42 97 4.69e-21 87.4
Msa1096910 MtrunA17_Chr1g0189941 59.649 57 23 0 49 105 23 79 7.51e-21 84.0
Msa1096910 MtrunA17_Chr1g0183961 66.667 69 22 1 50 117 27 95 2.36e-20 82.4
Msa1096910 MtrunA17_Chr4g0062551 63.158 57 21 0 50 106 53 109 2.86e-20 82.0
Msa1096910 MtrunA17_Chr8g0346741 56.250 64 28 0 46 109 35 98 3.41e-20 82.8
Msa1096910 MtrunA17_Chr4g0003421 56.000 75 31 1 46 120 36 108 3.94e-20 84.0
Msa1096910 MtrunA17_Chr4g0063751 63.158 57 21 0 50 106 7 63 5.16e-20 83.2
Msa1096910 MtrunA17_Chr2g0333011 61.667 60 23 0 50 109 7 66 7.01e-20 82.0
Msa1096910 MtrunA17_Chr1g0183931 54.945 91 39 2 39 128 91 180 8.80e-20 83.2
Msa1096910 MtrunA17_Chr4g0062161 63.158 57 21 0 50 106 53 109 9.74e-20 82.0
Msa1096910 MtrunA17_Chr7g0217991 47.727 88 39 2 30 117 25 105 2.29e-19 84.3
Msa1096910 MtrunA17_Chr7g0243431 62.500 64 17 1 49 105 77 140 2.71e-19 84.3
Msa1096910 MtrunA17_Chr1g0201671 46.154 117 44 2 57 154 146 262 3.03e-19 83.2
Msa1096910 MtrunA17_Chr1g0200931 48.718 78 36 2 32 105 2 79 3.49e-19 79.3
Msa1096910 MtrunA17_Chr7g0261201 61.039 77 29 1 46 121 94 170 4.31e-19 81.3
Msa1096910 MtrunA17_Chr1g0153151 45.679 81 41 1 50 130 44 121 6.59e-19 79.3
Msa1096910 MtrunA17_Chr1g0186681 61.017 59 21 1 50 106 19 77 9.35e-19 77.8
Msa1096910 MtrunA17_Chr1g0170471 62.069 58 21 1 57 113 90 147 1.06e-18 79.0
Msa1096910 MtrunA17_Chr6g0486711 66.129 62 21 0 46 107 45 106 1.43e-18 79.7
Msa1096910 MtrunA17_Chr4g0017851 48.101 79 41 0 50 128 118 196 1.53e-18 80.9
Msa1096910 MtrunA17_Chr5g0401871 43.902 82 39 1 49 130 24 98 1.96e-18 78.2
Msa1096910 MtrunA17_Chr6g0464581 81.132 53 10 0 57 109 187 239 3.83e-18 80.5
Msa1096910 MtrunA17_Chr1g0150661 40.000 90 54 0 17 106 2 91 4.48e-18 78.2
Msa1096910 MtrunA17_Chr1g0150671 41.111 90 49 1 17 106 17 102 4.60e-18 79.3
Msa1096910 MtrunA17_Chr1g0146191 51.190 84 41 0 23 106 20 103 5.28e-18 78.6
Msa1096910 MtrunA17_Chr6g0453661 54.098 61 28 0 45 105 33 93 5.48e-18 80.1
Msa1096910 MtrunA17_Chr8g0378811 55.738 61 27 0 45 105 50 110 5.84e-18 78.6
Msa1096910 MtrunA17_Chr4g0057241 58.065 62 25 1 45 106 10 70 9.86e-18 76.3
Msa1096910 MtrunA17_Chr6g0473941 43.750 96 52 1 32 125 13 108 1.45e-17 76.6
Msa1096910 MtrunA17_Chr1g0150631 39.604 101 54 2 20 113 1 101 1.48e-17 77.0
Msa1096910 MtrunA17_Chr3g0136551 43.529 85 46 1 41 125 58 140 1.66e-17 77.4
Msa1096910 MtrunA17_Chr3g0083501 60.784 51 20 0 57 107 2 52 2.03e-17 72.8
Msa1096910 MtrunA17_Chr1g0186741 51.724 87 34 2 45 123 68 154 3.17e-17 75.9
Msa1096910 MtrunA17_Chr8g0350701 55.556 63 25 1 46 105 20 82 3.27e-17 77.0
Msa1096910 MtrunA17_Chr1g0150691 54.386 57 26 0 50 106 22 78 3.30e-17 75.9
Msa1096910 MtrunA17_Chr2g0301191 54.386 57 26 0 50 106 19 75 3.62e-17 75.5
Msa1096910 MtrunA17_Chr7g0253424 53.333 60 28 0 50 109 39 98 4.02e-17 76.6
Msa1096910 MtrunA17_Chr6g0473981 44.944 89 48 1 40 128 45 132 4.10e-17 76.3
Msa1096910 MtrunA17_Chr6g0473961 43.820 89 49 1 40 128 45 132 4.83e-17 75.5
Msa1096910 MtrunA17_Chr6g0473861 44.578 83 46 0 46 128 59 141 5.11e-17 76.3
Msa1096910 MtrunA17_Chr7g0261171 63.235 68 24 1 45 111 80 147 5.46e-17 75.5
Msa1096910 MtrunA17_Chr5g0396191 63.793 58 21 0 50 107 11 68 6.07e-17 74.3
Msa1096910 MtrunA17_Chr1g0155751 67.241 58 19 0 50 107 39 96 7.10e-17 75.9
Msa1096910 MtrunA17_Chr6g0473741 42.169 83 48 0 46 128 62 144 8.98e-17 74.7
Msa1096910 MtrunA17_Chr1g0203861 55.000 60 27 0 46 105 40 99 9.05e-17 74.3
Msa1096910 MtrunA17_Chr6g0473971 45.349 86 46 1 40 125 45 129 1.05e-16 75.1
Msa1096910 MtrunA17_Chr6g0461271 46.377 69 37 0 41 109 24 92 1.34e-16 75.5
Msa1096910 MtrunA17_Chr1g0209891 66.667 48 16 0 50 97 54 101 1.63e-16 75.1
Msa1096910 MtrunA17_Chr8g0345531 62.500 48 18 0 50 97 116 163 1.69e-16 75.9
Msa1096910 MtrunA17_Chr2g0301171 52.632 57 27 0 50 106 19 75 2.04e-16 73.6
Msa1096910 MtrunA17_Chr2g0321071 44.706 85 45 2 46 128 43 127 2.65e-16 73.6
Msa1096910 MtrunA17_Chr1g0205961 41.837 98 43 3 43 134 106 195 2.73e-16 75.1
Msa1096910 MtrunA17_Chr6g0473931 41.237 97 55 1 33 127 14 110 2.86e-16 72.8
Msa1096910 MtrunA17_Chr6g0474001 43.820 89 49 1 40 128 45 132 3.27e-16 73.9
Msa1096910 MtrunA17_Chr4g0042761 42.857 77 44 0 29 105 27 103 4.11e-16 74.3
Msa1096910 MtrunA17_Chr8g0345551 64.583 48 17 0 50 97 117 164 4.97e-16 74.3
Msa1096910 MtrunA17_Chr6g0473881 51.613 62 30 0 46 107 106 167 5.77e-16 73.9
Msa1096910 MtrunA17_Chr2g0301181 36.538 104 59 1 40 136 9 112 7.97e-16 72.4
Msa1096910 MtrunA17_Chr6g0473771 51.667 60 29 0 48 107 41 100 8.20e-16 69.7
Msa1096910 MtrunA17_Chr6g0473781 40.964 83 49 0 46 128 53 135 9.97e-16 72.0
Msa1096910 MtrunA17_Chr3g0142081 56.410 78 32 1 50 125 39 116 1.33e-15 71.6
Msa1096910 MtrunA17_Chr1g0167781 64.516 62 21 1 45 105 77 138 1.77e-15 71.2
Msa1096910 MtrunA17_Chr5g0396171 50.000 58 29 0 52 109 26 83 1.93e-15 68.2
Msa1096910 MtrunA17_Chr3g0136541 43.243 74 42 0 52 125 42 115 7.00e-15 70.1
Msa1096910 MtrunA17_Chr5g0438841 42.857 84 48 0 46 129 12 95 1.11e-14 68.2
Msa1096910 MtrunA17_Chr1g0149331 63.158 57 21 0 50 106 7 63 1.19e-14 68.6
Msa1096910 MtrunA17_Chr3g0137831 61.538 65 22 1 42 106 3 64 1.93e-14 68.2
Msa1096910 MtrunA17_Chr4g0002771 48.936 94 39 2 18 105 42 132 2.04e-14 68.2
Msa1096910 MtrunA17_Chr5g0423811 52.308 65 28 1 25 89 66 127 2.29e-14 69.3
Msa1096910 MtrunA17_Chr5g0396301 53.333 60 26 1 50 107 18 77 3.36e-14 66.6
Msa1096910 MtrunA17_Chr7g0225131 50.877 57 25 1 50 106 29 82 3.25e-13 62.4
Msa1096910 MtrunA17_Chr5g0396741 67.213 61 20 0 46 106 113 173 3.83e-13 65.9
Msa1096910 MtrunA17_Chr5g0424051 41.837 98 49 2 17 106 56 153 6.16e-13 65.5
Msa1096910 MtrunA17_Chr5g0398091 32.143 140 73 5 46 166 50 186 1.72e-12 63.2
Msa1096910 MtrunA17_Chr5g0396181 46.667 75 40 0 50 124 21 95 1.83e-12 62.8
Msa1096910 MtrunA17_Chr5g0398061 32.143 140 73 5 46 166 45 181 2.61e-12 62.8
Msa1096910 MtrunA17_Chr5g0398081 47.059 68 30 1 46 107 45 112 2.70e-12 62.8
Msa1096910 MtrunA17_Chr3g0114761 48.101 79 37 2 30 106 7 83 3.51e-12 62.4
Msa1096910 MtrunA17_Chr1g0203831 49.333 75 37 1 50 124 57 130 3.96e-12 62.0
Msa1096910 MtrunA17_Chr1g0186721 48.052 77 38 2 50 124 17 93 1.03e-11 58.9
Msa1096910 MtrunA17_Chr6g0473791 49.057 53 27 0 46 98 53 105 1.08e-11 59.7
Msa1096910 MtrunA17_Chr1g0186711 45.333 75 40 1 50 123 17 91 1.62e-11 58.5
Msa1096910 MtrunA17_Chr8g0337801 57.778 45 19 0 61 105 169 213 2.02e-11 61.2
Msa1096910 MtrunA17_Chr1g0198661 35.238 105 57 3 41 143 53 148 4.83e-11 60.1
Msa1096910 MtrunA17_Chr3g0108241 56.897 58 24 1 50 106 115 172 5.26e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1096910 AT5G13330.1 50.282 177 62 6 1 162 1 166 1.52e-45 149
Msa1096910 AT5G61890.1 55.629 151 51 5 1 144 36 177 6.07e-43 143
Msa1096910 AT5G07310.1 62.500 120 40 3 1 118 44 160 3.10e-36 127
Msa1096910 AT2G33710.1 57.426 101 32 1 20 109 29 129 2.87e-34 120
Msa1096910 AT2G33710.2 74.648 71 18 0 39 109 59 129 3.15e-34 120
Msa1096910 AT2G47520.1 44.531 128 68 1 41 165 41 168 2.00e-30 109
Msa1096910 AT5G47220.1 63.095 84 29 2 27 109 95 177 1.92e-29 108
Msa1096910 AT4G17500.1 75.385 65 15 1 46 109 144 208 9.22e-29 107
Msa1096910 AT1G43160.1 45.963 161 71 4 1 149 1 157 2.23e-28 104
Msa1096910 AT3G16770.1 71.429 63 18 0 45 107 74 136 3.32e-28 105
Msa1096910 AT1G36060.1 54.369 103 40 2 22 117 108 210 9.33e-28 105
Msa1096910 AT2G44840.1 66.667 69 22 1 45 112 87 155 1.01e-27 103
Msa1096910 AT5G44210.1 70.968 62 18 0 45 106 28 89 1.11e-27 103
Msa1096910 AT5G50080.2 52.212 113 50 2 41 153 77 185 8.10e-27 101
Msa1096910 AT5G65130.1 56.122 98 37 2 40 134 101 195 8.16e-27 102
Msa1096910 AT5G50080.1 52.212 113 50 2 41 153 68 176 8.38e-27 101
Msa1096910 AT5G65130.2 56.122 98 37 2 40 134 103 197 8.74e-27 102
Msa1096910 AT4G28140.1 60.526 76 30 0 50 125 143 218 1.80e-26 102
Msa1096910 AT3G20310.1 58.537 82 31 1 35 116 12 90 3.31e-26 100
Msa1096910 AT5G51190.1 76.271 59 13 1 49 106 71 129 3.81e-26 99.8
Msa1096910 AT4G11140.1 71.930 57 16 0 50 106 87 143 3.93e-26 101
Msa1096910 AT3G15210.1 72.131 61 17 0 46 106 21 81 5.60e-26 99.4
Msa1096910 AT1G72360.1 63.636 66 24 0 41 106 16 81 7.14e-26 98.6
Msa1096910 AT1G28370.1 50.467 107 46 2 49 155 19 118 8.57e-26 97.4
Msa1096910 AT1G03800.1 50.549 91 45 0 43 133 46 136 9.15e-26 99.4
Msa1096910 AT1G28370.2 72.414 58 16 0 49 106 57 114 1.30e-25 97.8
Msa1096910 AT1G72360.3 63.636 66 24 0 41 106 65 130 1.59e-25 99.0
Msa1096910 AT5G47230.1 67.606 71 20 2 40 109 148 216 1.66e-25 99.8
Msa1096910 AT1G72360.2 63.636 66 24 0 41 106 67 132 1.67e-25 99.0
Msa1096910 AT1G28360.1 70.492 61 18 0 46 106 8 68 1.77e-25 97.1
Msa1096910 AT4G17490.1 56.471 85 34 2 30 113 119 201 3.30e-25 98.6
Msa1096910 AT5G64750.1 73.016 63 17 0 57 119 192 254 3.36e-25 100
Msa1096910 AT2G22200.1 57.317 82 34 1 44 124 65 146 3.54e-25 98.2
Msa1096910 AT1G22190.1 72.414 58 16 0 50 107 83 140 6.06e-25 97.4
Msa1096910 AT4G39780.1 59.722 72 29 0 36 107 79 150 6.82e-25 97.4
Msa1096910 AT4G27950.1 47.706 109 51 3 29 133 99 205 7.16e-25 98.6
Msa1096910 AT2G20880.1 52.381 84 29 1 50 122 187 270 9.30e-25 98.6
Msa1096910 AT4G32800.1 62.121 66 25 0 42 107 11 76 2.61e-24 95.1
Msa1096910 AT5G61600.1 59.211 76 29 2 49 123 87 161 3.02e-24 95.1
Msa1096910 AT1G78080.1 73.684 57 15 0 50 106 152 208 3.80e-24 96.7
Msa1096910 AT3G57600.1 63.014 73 25 1 49 121 27 97 6.48e-24 95.1
Msa1096910 AT3G23240.1 50.526 95 42 3 20 111 52 144 1.22e-23 93.2
Msa1096910 AT5G07580.1 71.186 59 16 1 49 106 109 167 1.37e-23 92.8
Msa1096910 AT2G35700.1 55.696 79 35 0 46 124 41 119 1.81e-23 92.0
Msa1096910 AT3G61630.1 66.667 66 21 1 41 105 95 160 1.85e-23 94.7
Msa1096910 AT1G75490.1 65.000 60 21 0 50 109 42 101 2.52e-23 92.0
Msa1096910 AT2G31230.1 63.014 73 22 2 40 111 80 148 3.49e-23 92.4
Msa1096910 AT1G50640.1 68.852 61 19 0 46 106 24 84 4.56e-23 91.7
Msa1096910 AT5G11590.1 62.121 66 25 0 42 107 43 108 7.02e-23 91.7
Msa1096910 AT1G46768.3 39.806 103 62 0 20 122 1 103 1.14e-22 88.6
Msa1096910 AT4G16750.1 52.500 80 38 0 46 125 36 115 1.20e-22 89.7
Msa1096910 AT4G13620.1 53.261 92 37 1 40 125 222 313 1.43e-22 93.2
Msa1096910 AT5G53290.1 66.071 56 19 0 50 105 125 180 1.43e-22 92.8
Msa1096910 AT1G46768.1 39.806 103 62 0 20 122 1 103 1.56e-22 88.6
Msa1096910 AT1G46768.2 39.806 103 62 0 20 122 1 103 1.56e-22 88.6
Msa1096910 AT2G40340.2 52.326 86 37 2 50 135 14 95 1.71e-22 91.7
Msa1096910 AT2G40340.5 52.326 86 37 2 50 135 14 95 1.71e-22 91.7
Msa1096910 AT2G40340.4 52.326 86 37 2 50 135 14 95 1.71e-22 91.7
Msa1096910 AT3G23230.1 64.516 62 21 1 46 106 16 77 1.73e-22 88.2
Msa1096910 AT5G13910.1 59.375 64 26 0 42 105 12 75 2.50e-22 89.4
Msa1096910 AT2G44940.1 64.516 62 22 0 46 107 96 157 2.53e-22 91.3
Msa1096910 AT4G23750.2 61.290 62 24 0 44 105 116 177 2.64e-22 92.0
Msa1096910 AT4G23750.1 61.290 62 24 0 44 105 116 177 2.64e-22 92.0
Msa1096910 AT3G16280.1 43.103 116 54 1 21 124 20 135 2.65e-22 90.1
Msa1096910 AT5G43410.1 70.690 58 16 1 50 106 15 72 2.76e-22 87.4
Msa1096910 AT3G16280.2 46.465 99 41 1 21 107 38 136 3.06e-22 90.1
Msa1096910 AT5G25390.2 51.087 92 42 2 50 140 7 96 3.12e-22 88.6
Msa1096910 AT2G40340.3 52.326 86 37 2 50 135 72 153 4.87e-22 90.5
Msa1096910 AT1G12980.1 68.421 57 18 0 49 105 56 112 5.36e-22 90.9
Msa1096910 AT2G46310.1 67.857 56 18 0 50 105 99 154 5.66e-22 90.1
Msa1096910 AT1G53910.3 60.494 81 32 0 45 125 118 198 5.77e-22 91.3
Msa1096910 AT1G53910.1 60.494 81 32 0 45 125 120 200 5.82e-22 91.3
Msa1096910 AT1G53910.2 60.494 81 32 0 45 125 120 200 5.82e-22 91.3
Msa1096910 AT2G40340.1 52.326 86 37 2 50 135 72 153 6.04e-22 90.9
Msa1096910 AT2G40340.6 52.326 86 37 2 50 135 79 160 6.12e-22 90.9
Msa1096910 AT1G71450.1 50.617 81 36 1 50 126 24 104 6.87e-22 87.8
Msa1096910 AT5G18560.1 66.071 56 19 0 50 105 55 110 8.32e-22 90.5
Msa1096910 AT4G34410.1 71.233 73 19 1 50 122 136 206 8.79e-22 89.4
Msa1096910 AT1G01250.1 50.617 81 40 0 44 124 39 119 9.97e-22 87.4
Msa1096910 AT3G11020.1 60.870 69 27 0 50 118 78 146 3.50e-21 88.6
Msa1096910 AT5G25810.1 47.674 86 45 0 22 107 8 93 3.70e-21 86.7
Msa1096910 AT2G25820.1 65.517 58 20 0 50 107 26 83 3.70e-21 86.7
Msa1096910 AT1G24590.1 67.857 56 18 0 50 105 58 113 4.28e-21 88.2
Msa1096910 AT3G14230.3 74.603 63 16 0 45 107 118 180 8.09e-21 88.2
Msa1096910 AT3G14230.2 74.603 63 16 0 45 107 119 181 8.23e-21 88.2
Msa1096910 AT3G14230.1 74.603 63 16 0 45 107 123 185 8.58e-21 88.2
Msa1096910 AT3G60490.1 51.899 79 32 1 40 112 61 139 9.60e-21 86.3
Msa1096910 AT4G06746.1 48.718 78 37 1 34 111 23 97 9.86e-21 84.0
Msa1096910 AT4G18450.1 66.129 62 19 2 46 105 106 167 1.28e-20 86.7
Msa1096910 AT1G28160.1 64.286 56 20 0 50 105 39 94 2.04e-20 85.1
Msa1096910 AT2G36450.1 60.000 65 25 1 46 109 11 75 2.51e-20 83.6
Msa1096910 AT4G36900.1 45.882 85 45 1 24 107 3 87 3.57e-20 83.6
Msa1096910 AT1G15360.1 60.938 64 22 1 43 106 3 63 3.92e-20 83.6
Msa1096910 AT1G15360.2 60.938 64 22 1 43 106 3 63 3.92e-20 83.6
Msa1096910 AT5G18450.1 62.500 56 21 0 50 105 34 89 5.72e-20 85.1
Msa1096910 AT3G50260.1 41.860 86 49 1 43 128 14 98 6.05e-20 82.0
Msa1096910 AT5G25390.1 54.878 82 31 3 50 130 7 83 6.45e-20 82.8
Msa1096910 AT5G25190.1 61.404 57 22 0 50 106 8 64 7.00e-20 82.4
Msa1096910 AT1G71130.1 56.579 76 26 2 35 105 66 139 1.20e-19 81.3
Msa1096910 AT1G22985.1 60.000 65 23 1 44 105 69 133 1.40e-19 80.9
Msa1096910 AT5G05410.2 63.158 57 21 0 50 106 79 135 1.43e-19 84.0
Msa1096910 AT1G77200.1 51.807 83 40 0 42 124 35 117 1.46e-19 82.8
Msa1096910 AT5G05410.1 63.158 57 21 0 50 106 79 135 2.30e-19 84.0
Msa1096910 AT2G23340.1 46.575 73 39 0 50 122 28 100 4.76e-19 80.1
Msa1096910 AT4G25490.1 48.750 80 41 0 46 125 44 123 8.90e-19 80.1
Msa1096910 AT5G67190.1 53.846 65 29 1 44 107 14 78 9.50e-19 79.3
Msa1096910 AT4G25470.1 45.783 83 45 0 46 128 47 129 1.12e-18 80.1
Msa1096910 AT2G40350.2 57.895 57 24 0 50 106 74 130 2.03e-18 78.2
Msa1096910 AT4G31060.1 47.500 80 36 1 33 106 4 83 2.12e-18 78.6
Msa1096910 AT2G40350.1 57.895 57 24 0 50 106 67 123 2.33e-18 77.8
Msa1096910 AT1G12890.1 62.500 56 21 0 50 105 21 76 2.47e-18 79.3
Msa1096910 AT4G25480.1 47.500 80 42 0 46 125 47 126 2.57e-18 79.0
Msa1096910 AT1G21910.1 57.895 57 24 0 50 106 50 106 2.87e-18 79.3
Msa1096910 AT5G51990.1 45.783 83 45 0 46 128 50 132 4.28e-18 78.6
Msa1096910 AT1G53170.1 70.000 60 18 0 46 105 27 86 5.04e-18 77.8
Msa1096910 AT1G06160.1 71.429 63 17 1 50 111 82 144 5.82e-18 78.6
Msa1096910 AT5G21960.1 55.000 60 27 0 48 107 5 64 6.60e-18 78.2
Msa1096910 AT5G19790.1 45.455 77 42 0 29 105 1 77 7.09e-18 78.6
Msa1096910 AT5G67000.1 40.000 120 51 3 1 104 61 175 8.55e-18 77.0
Msa1096910 AT1G19210.1 53.448 58 27 0 50 107 12 69 2.40e-17 75.9
Msa1096910 AT1G68550.1 64.912 57 18 1 45 101 110 164 3.40e-17 77.8
Msa1096910 AT1G68550.2 64.912 57 18 1 45 101 110 164 3.40e-17 77.8
Msa1096910 AT5G61590.1 71.186 59 16 1 49 106 106 164 3.71e-17 75.9
Msa1096910 AT3G23220.1 70.690 58 16 1 50 106 14 71 1.65e-16 72.4
Msa1096910 AT1G04370.1 72.414 58 15 1 50 106 20 77 1.91e-16 72.0
Msa1096910 AT1G74930.1 47.692 65 34 0 42 106 13 77 2.59e-16 73.2
Msa1096910 AT1G33760.1 53.333 75 35 0 50 124 20 94 1.55e-15 71.2
Msa1096910 AT1G64380.1 69.841 63 19 0 44 106 130 192 6.45e-15 71.6
Msa1096910 AT2G40220.1 66.102 59 20 0 47 105 52 110 1.73e-14 70.1
Msa1096910 AT5G11190.1 64.912 57 20 0 50 106 7 63 2.15e-14 68.2
Msa1096910 AT1G63030.2 40.449 89 52 1 40 128 21 108 2.71e-14 67.8
Msa1096910 AT1G63030.1 40.449 89 52 1 40 128 21 108 2.71e-14 67.8
Msa1096910 AT1G22810.1 45.679 81 41 2 50 128 14 93 6.40e-14 65.9
Msa1096910 AT2G38340.1 48.780 82 34 1 49 122 69 150 8.60e-14 67.4
Msa1096910 AT1G12610.1 48.333 60 31 0 46 105 26 85 1.02e-13 66.6
Msa1096910 AT1G12630.1 56.923 65 27 1 45 109 14 77 1.94e-13 65.5
Msa1096910 AT1G77640.1 59.649 57 23 0 50 106 43 99 1.19e-12 64.3
Msa1096910 AT1G71520.1 58.140 43 18 0 50 92 14 56 1.28e-12 62.4
Msa1096910 AT1G80580.1 62.295 61 23 0 45 105 111 171 2.02e-12 63.9
Msa1096910 AT1G49120.1 59.574 47 19 0 50 96 87 133 3.12e-12 63.9
Msa1096910 AT3G25890.1 62.222 45 17 0 52 96 133 177 4.98e-12 63.2
Msa1096910 AT3G25890.2 62.222 45 17 0 52 96 133 177 4.98e-12 63.2
Msa1096910 AT1G44830.1 53.968 63 28 1 46 107 31 93 1.28e-11 61.2
Msa1096910 AT1G68840.2 44.444 72 36 2 36 105 49 118 1.78e-11 62.0
Msa1096910 AT1G68840.1 44.444 72 36 2 36 105 49 118 1.78e-11 62.0

Find 72 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATTGAACAACTCTTTC+AGG 0.178236 7_3:+21968178 None:intergenic
GGATTTATAAGTGTATTATT+TGG 0.213417 7_3:-21967700 Msa1096910:three_prime_UTR
AAAAGATGAGATGCATAATA+AGG 0.243026 7_3:+21968031 None:intergenic
ATGTAAGAAAAGAGAGTATT+TGG 0.259850 7_3:+21967649 None:intergenic
CAAAATTGACAGAAATATTA+TGG 0.279794 7_3:+21967742 None:intergenic
ATTATGCATCTAATTCTAAT+TGG 0.289367 7_3:-21970231 Msa1096910:five_prime_UTR
GACAAAGACCATGGGGAAAA+TGG 0.294498 7_3:-21968333 Msa1096910:CDS
GGCAACTTTCCATGCTTTCT+TGG 0.307951 7_3:+21970328 None:intergenic
TGAGCATACTGAAACAAGTT+TGG 0.320431 7_3:+21968079 None:intergenic
TCTGCTCTCTCTCAAGTCAT+TGG 0.374696 7_3:-21970178 Msa1096910:CDS
TGCCCTTACTTATAATAGTT+AGG 0.391363 7_3:+21970422 None:intergenic
AAACCTAACTATTATAAGTA+AGG 0.397366 7_3:-21970425 Msa1096910:five_prime_UTR
ATATCTTAACTGCATGAATA+CGG 0.397544 7_3:+21967935 None:intergenic
TACCAAGTTTAAATATAAAC+TGG 0.398392 7_3:-21967847 Msa1096910:three_prime_UTR
ATACGGGATTTCATGATTGC+AGG 0.400948 7_3:+21967952 None:intergenic
ACAATCAACCTCAACTACTA+TGG 0.404997 7_3:-21970122 Msa1096910:CDS
CATGTGTGGGTTATTATGAT+TGG 0.431927 7_3:+21970147 None:intergenic
CTAGTCATACTTCATTGGAT+TGG 0.434117 7_3:+21967626 None:intergenic
TGCATTGAACAACTCTTTCA+GGG 0.439733 7_3:+21968179 None:intergenic
GAGCATACTGAAACAAGTTT+GGG 0.446792 7_3:+21968080 None:intergenic
AACAAACCTTGATCTATAAG+AGG 0.457123 7_3:+21970073 None:intergenic
AAAGATGAGATGCATAATAA+GGG 0.465199 7_3:+21968032 None:intergenic
ACAAAGACCATGGGGAAAAT+GGG 0.467232 7_3:-21968332 Msa1096910:CDS
TCGGAGTCTAGTGACCCAAT+TGG 0.474118 7_3:-21970471 None:intergenic
AAAGCAGCTAGAGTTTGGTT+AGG 0.477187 7_3:-21968286 Msa1096910:CDS
CCTCAACCTCTTATAGATCA+AGG 0.479876 7_3:-21970079 Msa1096910:intron
GAGAAAATCAAATCTAAAAG+TGG 0.487004 7_3:-21970353 Msa1096910:five_prime_UTR
ATCAGAGGCTAAAGAGAAAG+AGG 0.488821 7_3:-21970290 Msa1096910:five_prime_UTR
GACCAGTTTATATTTAAACT+TGG 0.491217 7_3:+21967845 None:intergenic
TTCATTGACCATAGTAGTTG+AGG 0.492411 7_3:+21970114 None:intergenic
GCTACCATGCACTACCATGC+AGG 0.505228 7_3:+21967770 None:intergenic
ATCACTAGATTCTACTGGCC+CGG 0.509965 7_3:+21967977 None:intergenic
CCTTGATCTATAAGAGGTTG+AGG 0.510796 7_3:+21970079 None:intergenic
ATGGTAGACAAATCAGTGTC+TGG 0.512480 7_3:+21970205 None:intergenic
TGACAGAAATATTATGGATG+TGG 0.512665 7_3:+21967748 None:intergenic
TGCCGCGACTTGTAAATGTC+GGG 0.522778 7_3:-21967797 Msa1096910:three_prime_UTR
CAATCCAATGAAGTATGACT+AGG 0.528463 7_3:-21967625 Msa1096910:three_prime_UTR
TGTCTCACTCCTCTATAGTG+TGG 0.535265 7_3:+21968352 None:intergenic
AGGTTGATTGTGCCATGTGT+GGG 0.542111 7_3:+21970134 None:intergenic
AACCTAACTATTATAAGTAA+GGG 0.542439 7_3:-21970424 Msa1096910:five_prime_UTR
TTGACATGAATATGATATTG+AGG 0.546105 7_3:+21970393 None:intergenic
GAGGTTGATTGTGCCATGTG+TGG 0.547663 7_3:+21970133 None:intergenic
TATCTTAACTGCATGAATAC+GGG 0.549874 7_3:+21967936 None:intergenic
AATCCAATGAAGTATGACTA+GGG 0.554842 7_3:-21967624 Msa1096910:three_prime_UTR
AGGAAATCACTAGATTCTAC+TGG 0.559811 7_3:+21967972 None:intergenic
AATAGTGCAATTCAACAAAG+TGG 0.561647 7_3:-21968136 Msa1096910:CDS
TTGAGAGAGAGCAGAAACCA+TGG 0.565044 7_3:+21970186 None:intergenic
AAAGTGGATCCAAGAAAGCA+TGG 0.575539 7_3:-21970337 Msa1096910:five_prime_UTR
TGAAGGAGATCGTCAACCAC+CGG 0.578060 7_3:-21967996 Msa1096910:CDS
TGTTCTATAAACTAGAGTCA+AGG 0.581220 7_3:-21967721 Msa1096910:three_prime_UTR
TTCCCGACATTTACAAGTCG+CGG 0.584444 7_3:+21967795 None:intergenic
AAAGCTGCACTCAAATTCAA+AGG 0.590296 7_3:-21968223 Msa1096910:CDS
GTTGTATAATCAAGATTGAA+CGG 0.598230 7_3:-21967907 Msa1096910:three_prime_UTR
TCTGATGTTTGTGAAGATAG+TGG 0.598564 7_3:+21970307 None:intergenic
ATGCCGCGACTTGTAAATGT+CGG 0.599631 7_3:-21967798 Msa1096910:three_prime_UTR
AGGAGTGAGACAAAGACCAT+GGG 0.604157 7_3:-21968341 Msa1096910:CDS
AGACACTGATTTGTCTACCA+TGG 0.604782 7_3:-21970203 Msa1096910:exon
CAATCATAATAACCCACACA+TGG 0.613406 7_3:-21970146 Msa1096910:CDS
GGTCAATCTTGATCATCGAA+TGG 0.617918 7_3:-21967826 Msa1096910:three_prime_UTR
GAAGGAGATCGTCAACCACC+GGG 0.620049 7_3:-21967995 Msa1096910:CDS
GAGGAGTGAGACAAAGACCA+TGG 0.622312 7_3:-21968342 Msa1096910:CDS
CTACCATGCACTACCATGCA+GGG 0.622697 7_3:+21967771 None:intergenic
AATCCCTGCATGGTAGTGCA+TGG 0.631510 7_3:-21967774 Msa1096910:three_prime_UTR
TGATCTATAAGAGGTTGAGG+TGG 0.646819 7_3:+21970082 None:intergenic
TCCAATGAAGTATGACTAGG+GGG 0.648937 7_3:-21967622 Msa1096910:three_prime_UTR
ATCCAATGAAGTATGACTAG+GGG 0.655545 7_3:-21967623 Msa1096910:three_prime_UTR
AAATGTCGGGAATCCCTGCA+TGG 0.658029 7_3:-21967784 Msa1096910:three_prime_UTR
TCATGCAGTTAAGATATCAG+TGG 0.664962 7_3:-21967929 Msa1096910:three_prime_UTR
ACTATCTTCACAAACATCAG+AGG 0.676164 7_3:-21970305 Msa1096910:five_prime_UTR
ACTAGATTCTACTGGCCCGG+TGG 0.682011 7_3:+21967980 None:intergenic
GGAGTGAGACAAAGACCATG+GGG 0.728314 7_3:-21968340 Msa1096910:CDS
CCAATGAAGTATGACTAGGG+GGG 0.729161 7_3:-21967621 Msa1096910:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTAATTAATTTTCTAAA+TGG - chr7_3:21968045-21968064 Msa1096910:CDS 10.0%
!!! GTTTAATTAATTTTCTAAAT+GGG - chr7_3:21968046-21968065 Msa1096910:CDS 10.0%
!!! GACTAAATTTTATTTATTTC+AGG + chr7_3:21968200-21968219 None:intergenic 15.0%
!! TTATTTATCTCACAATTAAT+GGG + chr7_3:21968306-21968325 None:intergenic 15.0%
!! TTTATTTATCTCACAATTAA+TGG + chr7_3:21968307-21968326 None:intergenic 15.0%
!!! AAAAAAGAAGGAATATTTTA+AGG + chr7_3:21968668-21968687 None:intergenic 15.0%
!!! AAAGTCATTTTTTAAAAAGA+AGG - chr7_3:21968778-21968797 Msa1096910:intron 15.0%
!! TATTTAATTATCTTATTGGA+AGG - chr7_3:21968852-21968871 Msa1096910:intron 15.0%
!!! AAACAAAACTATTTTTTCAT+GGG + chr7_3:21969458-21969477 None:intergenic 15.0%
!!! TAAACAAAACTATTTTTTCA+TGG + chr7_3:21969459-21969478 None:intergenic 15.0%
!!! TAATTCATTTTTACTTTCAT+TGG + chr7_3:21969616-21969635 None:intergenic 15.0%
!! AAACCTAACTATTATAAGTA+AGG - chr7_3:21967624-21967643 Msa1096910:three_prime_UTR 20.0%
!! AACCTAACTATTATAAGTAA+GGG - chr7_3:21967625-21967644 Msa1096910:three_prime_UTR 20.0%
!! ATTATGCATCTAATTCTAAT+TGG - chr7_3:21967818-21967837 Msa1096910:three_prime_UTR 20.0%
!!! TTATCATGACTACTTTTAAA+GGG + chr7_3:21968164-21968183 None:intergenic 20.0%
!!! ATTATCATGACTACTTTTAA+AGG + chr7_3:21968165-21968184 None:intergenic 20.0%
!!! AGTCATGATAATTTGAAATT+TGG - chr7_3:21968173-21968192 Msa1096910:CDS 20.0%
!! TTTAGATCATGATTCAAATT+TGG - chr7_3:21968228-21968247 Msa1096910:CDS 20.0%
!! TTTCAATCAAGATTCAAATT+TGG - chr7_3:21968343-21968362 Msa1096910:CDS 20.0%
!! AAATGAACTCAAAATAAGAA+CGG + chr7_3:21968271-21968290 None:intergenic 20.0%
!!! TTTATGCTTCTTTCTTTTTA+TGG - chr7_3:21968459-21968478 Msa1096910:intron 20.0%
!!! AAACAAATTCTTGCTTTTTA+AGG + chr7_3:21968634-21968653 None:intergenic 20.0%
!!! CAAGTAAGCTAATTATTTTT+TGG - chr7_3:21968827-21968846 Msa1096910:intron 20.0%
!! GGCTTATTTAATTATCTTAT+TGG - chr7_3:21968848-21968867 Msa1096910:intron 20.0%
!!! AAAATCTTATTTGAAACATG+TGG - chr7_3:21968991-21969010 Msa1096910:intron 20.0%
!! TAATGTTTATTACTAGTCAA+GGG + chr7_3:21969020-21969039 None:intergenic 20.0%
!! ATAATGTTTATTACTAGTCA+AGG + chr7_3:21969021-21969040 None:intergenic 20.0%
!! TACCAAGTTTAAATATAAAC+TGG - chr7_3:21970202-21970221 Msa1096910:exon 20.0%
!! CAAAATTGACAGAAATATTA+TGG + chr7_3:21970310-21970329 None:intergenic 20.0%
!! GGATTTATAAGTGTATTATT+TGG - chr7_3:21970349-21970368 Msa1096910:five_prime_UTR 20.0%
! AAGAAAAAGTTTAAGCCAAT+TGG + chr7_3:21967596-21967615 None:intergenic 25.0%
! TTGACATGAATATGATATTG+AGG + chr7_3:21967659-21967678 None:intergenic 25.0%
! GAGAAAATCAAATCTAAAAG+TGG - chr7_3:21967696-21967715 Msa1096910:three_prime_UTR 25.0%
!!! CCAATTATTTTTGGGAAATT+AGG + chr7_3:21968135-21968154 None:intergenic 25.0%
! CCTAATTTCCCAAAAATAAT+TGG - chr7_3:21968132-21968151 Msa1096910:CDS 25.0%
!!! GGTTTACACCAATTATTTTT+GGG + chr7_3:21968143-21968162 None:intergenic 25.0%
!! GCTCAGAATTTAACTTTAAT+GGG + chr7_3:21968420-21968439 None:intergenic 25.0%
!! AGCTCAGAATTTAACTTTAA+TGG + chr7_3:21968421-21968440 None:intergenic 25.0%
!!! AATTCTTGCTTTTTAAGGAT+AGG + chr7_3:21968629-21968648 None:intergenic 25.0%
!!! AGAAGGAATATTTTAAGGAT+AGG + chr7_3:21968663-21968682 None:intergenic 25.0%
! TGTATTAGCAACAAAAAAGA+AGG + chr7_3:21968680-21968699 None:intergenic 25.0%
! GGGTTACTCAAAAAAAAAAA+AGG - chr7_3:21968934-21968953 Msa1096910:intron 25.0%
!! AAAAAAAAGGTACACTTTGA+AGG - chr7_3:21968947-21968966 Msa1096910:intron 25.0%
!! AAAAAAAGGTACACTTTGAA+GGG - chr7_3:21968948-21968967 Msa1096910:intron 25.0%
!!! TACTTTTATTTTAGCCATCA+TGG + chr7_3:21969156-21969175 None:intergenic 25.0%
! TGAAATATATTGTTTCGATC+AGG - chr7_3:21969504-21969523 Msa1096910:intron 25.0%
! GAAATATATTGTTTCGATCA+GGG - chr7_3:21969505-21969524 Msa1096910:intron 25.0%
! ATATTCAAGTCGAATCAATA+AGG + chr7_3:21969546-21969565 None:intergenic 25.0%
! TAATCATATGCATGCATATA+TGG + chr7_3:21969589-21969608 None:intergenic 25.0%
! TTAATAACACATGCAAAACA+AGG + chr7_3:21969657-21969676 None:intergenic 25.0%
! AAAGATGAGATGCATAATAA+GGG + chr7_3:21970020-21970039 None:intergenic 25.0%
! AAAAGATGAGATGCATAATA+AGG + chr7_3:21970021-21970040 None:intergenic 25.0%
! ATATCTTAACTGCATGAATA+CGG + chr7_3:21970117-21970136 None:intergenic 25.0%
! GTTGTATAATCAAGATTGAA+CGG - chr7_3:21970142-21970161 Msa1096910:CDS 25.0%
! GACCAGTTTATATTTAAACT+TGG + chr7_3:21970207-21970226 None:intergenic 25.0%
!!! ATGTAAGAAAAGAGAGTATT+TGG + chr7_3:21970403-21970422 None:intergenic 25.0%
TGCCCTTACTTATAATAGTT+AGG + chr7_3:21967630-21967649 None:intergenic 30.0%
AACAAACCTTGATCTATAAG+AGG + chr7_3:21967979-21967998 None:intergenic 30.0%
GGATAAATTGATGCTATTGT+TGG - chr7_3:21968067-21968086 Msa1096910:CDS 30.0%
! GGGTTTACACCAATTATTTT+TGG + chr7_3:21968144-21968163 None:intergenic 30.0%
TTGCTAATACATACTAGTAC+AGG - chr7_3:21968689-21968708 Msa1096910:intron 30.0%
! AAAAAAGGTACACTTTGAAG+GGG - chr7_3:21968949-21968968 Msa1096910:intron 30.0%
!! AATATGAGTGTTGCTATTTC+CGG - chr7_3:21969196-21969215 Msa1096910:intron 30.0%
AAATGCTTAATATAGCGAAG+GGG + chr7_3:21969350-21969369 None:intergenic 30.0%
GAAATGCTTAATATAGCGAA+GGG + chr7_3:21969351-21969370 None:intergenic 30.0%
AGAAATGCTTAATATAGCGA+AGG + chr7_3:21969352-21969371 None:intergenic 30.0%
! TCTATAGTGTGGTTTCTTTT+TGG + chr7_3:21969689-21969708 None:intergenic 30.0%
AAAAAGAAACCACACTATAG+AGG - chr7_3:21969688-21969707 Msa1096910:intron 30.0%
!!! AAACTCTAGCTGCTTTTTTT+GGG + chr7_3:21969759-21969778 None:intergenic 30.0%
AATAGTGCAATTCAACAAAG+TGG - chr7_3:21969913-21969932 Msa1096910:intron 30.0%
! CTTTTCAATCAACAACATGA+AGG - chr7_3:21970036-21970055 Msa1096910:intron 30.0%
TATCTTAACTGCATGAATAC+GGG + chr7_3:21970116-21970135 None:intergenic 30.0%
TGACAGAAATATTATGGATG+TGG + chr7_3:21970304-21970323 None:intergenic 30.0%
TGTTCTATAAACTAGAGTCA+AGG - chr7_3:21970328-21970347 Msa1096910:five_prime_UTR 30.0%
AATCCAATGAAGTATGACTA+GGG - chr7_3:21970425-21970444 Msa1096910:five_prime_UTR 30.0%
TCTGATGTTTGTGAAGATAG+TGG + chr7_3:21967745-21967764 None:intergenic 35.0%
ACTATCTTCACAAACATCAG+AGG - chr7_3:21967744-21967763 Msa1096910:three_prime_UTR 35.0%
! CATGTGTGGGTTATTATGAT+TGG + chr7_3:21967905-21967924 None:intergenic 35.0%
CAATCATAATAACCCACACA+TGG - chr7_3:21967903-21967922 Msa1096910:three_prime_UTR 35.0%
ACAATCAACCTCAACTACTA+TGG - chr7_3:21967927-21967946 Msa1096910:three_prime_UTR 35.0%
TTCATTGACCATAGTAGTTG+AGG + chr7_3:21967938-21967957 None:intergenic 35.0%
AGTTAAGTTTACAGAGACGA+TGG - chr7_3:21968556-21968575 Msa1096910:intron 35.0%
TATGTTGCTCAATCACTTTC+TGG - chr7_3:21968749-21968768 Msa1096910:intron 35.0%
ACTGACATGTACACTTTGAA+GGG - chr7_3:21968914-21968933 Msa1096910:intron 35.0%
!!! CCATCATGGTGTAACTTTTT+TGG + chr7_3:21969142-21969161 None:intergenic 35.0%
CCAAAAAAGTTACACCATGA+TGG - chr7_3:21969139-21969158 Msa1096910:intron 35.0%
GGAAATAGCAACACTCATAT+TGG + chr7_3:21969197-21969216 None:intergenic 35.0%
TTCGTGATAAAATCTTTCGC+CGG + chr7_3:21969218-21969237 None:intergenic 35.0%
!!! CAAACTCTAGCTGCTTTTTT+TGG + chr7_3:21969760-21969779 None:intergenic 35.0%
CAAAAAAAGCAGCTAGAGTT+TGG - chr7_3:21969758-21969777 Msa1096910:intron 35.0%
AAAGCTGCACTCAAATTCAA+AGG - chr7_3:21969826-21969845 Msa1096910:intron 35.0%
TGCATTGAACAACTCTTTCA+GGG + chr7_3:21969873-21969892 None:intergenic 35.0%
TTGCATTGAACAACTCTTTC+AGG + chr7_3:21969874-21969893 None:intergenic 35.0%
GAGCATACTGAAACAAGTTT+GGG + chr7_3:21969972-21969991 None:intergenic 35.0%
TGAGCATACTGAAACAAGTT+TGG + chr7_3:21969973-21969992 None:intergenic 35.0%
AGGAAATCACTAGATTCTAC+TGG + chr7_3:21970080-21970099 None:intergenic 35.0%
TCATGCAGTTAAGATATCAG+TGG - chr7_3:21970120-21970139 Msa1096910:CDS 35.0%
CTAGTCATACTTCATTGGAT+TGG + chr7_3:21970426-21970445 None:intergenic 35.0%
CAATCCAATGAAGTATGACT+AGG - chr7_3:21970424-21970443 Msa1096910:five_prime_UTR 35.0%
ATCCAATGAAGTATGACTAG+GGG - chr7_3:21970426-21970445 Msa1096910:five_prime_UTR 35.0%
AAAGTGGATCCAAGAAAGCA+TGG - chr7_3:21967712-21967731 Msa1096910:three_prime_UTR 40.0%
ATCAGAGGCTAAAGAGAAAG+AGG - chr7_3:21967759-21967778 Msa1096910:three_prime_UTR 40.0%
ATGGTAGACAAATCAGTGTC+TGG + chr7_3:21967847-21967866 None:intergenic 40.0%
!! AGACACTGATTTGTCTACCA+TGG - chr7_3:21967846-21967865 Msa1096910:three_prime_UTR 40.0%
TGATCTATAAGAGGTTGAGG+TGG + chr7_3:21967970-21967989 None:intergenic 40.0%
CCTTGATCTATAAGAGGTTG+AGG + chr7_3:21967973-21967992 None:intergenic 40.0%
CCTCAACCTCTTATAGATCA+AGG - chr7_3:21967970-21967989 Msa1096910:exon 40.0%
! TGTTGGAGCCTGTTCATTTT+TGG - chr7_3:21968084-21968103 Msa1096910:CDS 40.0%
!! GTTGGAGCCTGTTCATTTTT+GGG - chr7_3:21968085-21968104 Msa1096910:CDS 40.0%
!! TTGGAGCCTGTTCATTTTTG+GGG - chr7_3:21968086-21968105 Msa1096910:CDS 40.0%
! TTTTCCCCCCAAAAATGAAC+AGG + chr7_3:21968095-21968114 None:intergenic 40.0%
!! GTTCATTTTTGGGGGGAAAA+TGG - chr7_3:21968095-21968114 Msa1096910:CDS 40.0%
GACGATGGATAAGTATACGT+TGG - chr7_3:21968571-21968590 Msa1096910:intron 40.0%
AGTGTACATGTCAGTGTCAT+CGG + chr7_3:21968909-21968928 None:intergenic 40.0%
CACTGACATGTACACTTTGA+AGG - chr7_3:21968913-21968932 Msa1096910:intron 40.0%
! GGCGAAAGATTTTATCACGA+AGG - chr7_3:21969217-21969236 Msa1096910:intron 40.0%
! CCATGTTTTCCACTAAGCAT+GGG + chr7_3:21969271-21969290 None:intergenic 40.0%
CCATGCTTAGTGGAAAACAT+GGG - chr7_3:21969269-21969288 Msa1096910:intron 40.0%
AATGACGTGTGGTAACTAGT+GGG + chr7_3:21969318-21969337 None:intergenic 40.0%
AAATGACGTGTGGTAACTAG+TGG + chr7_3:21969319-21969338 None:intergenic 40.0%
ACAAAGACCATGGGGAAAAT+GGG - chr7_3:21969717-21969736 Msa1096910:intron 40.0%
AAAGCAGCTAGAGTTTGGTT+AGG - chr7_3:21969763-21969782 Msa1096910:intron 40.0%
ATACGGGATTTCATGATTGC+AGG + chr7_3:21970100-21970119 None:intergenic 40.0%
GGTCAATCTTGATCATCGAA+TGG - chr7_3:21970223-21970242 Msa1096910:five_prime_UTR 40.0%
TCCAATGAAGTATGACTAGG+GGG - chr7_3:21970427-21970446 Msa1096910:five_prime_UTR 40.0%
GGCAACTTTCCATGCTTTCT+TGG + chr7_3:21967724-21967743 None:intergenic 45.0%
TTGAGAGAGAGCAGAAACCA+TGG + chr7_3:21967866-21967885 None:intergenic 45.0%
TCTGCTCTCTCTCAAGTCAT+TGG - chr7_3:21967871-21967890 Msa1096910:three_prime_UTR 45.0%
! AGGTTGATTGTGCCATGTGT+GGG + chr7_3:21967918-21967937 None:intergenic 45.0%
!! TGGAGCCTGTTCATTTTTGG+GGG - chr7_3:21968087-21968106 Msa1096910:CDS 45.0%
CCACTAAGCATGGGATCTAA+CGG + chr7_3:21969262-21969281 None:intergenic 45.0%
CCCATGCTTAGTGGAAAACA+TGG - chr7_3:21969268-21969287 Msa1096910:intron 45.0%
! CCCATGTTTTCCACTAAGCA+TGG + chr7_3:21969272-21969291 None:intergenic 45.0%
AGTGGAAAACATGGGTGAGA+TGG - chr7_3:21969277-21969296 Msa1096910:intron 45.0%
GAAAACATGGGTGAGATGGA+AGG - chr7_3:21969281-21969300 Msa1096910:intron 45.0%
GGACAATCACAAATGACGTG+TGG + chr7_3:21969329-21969348 None:intergenic 45.0%
TGTCTCACTCCTCTATAGTG+TGG + chr7_3:21969700-21969719 None:intergenic 45.0%
AGGAGTGAGACAAAGACCAT+GGG - chr7_3:21969708-21969727 Msa1096910:intron 45.0%
GACAAAGACCATGGGGAAAA+TGG - chr7_3:21969716-21969735 Msa1096910:intron 45.0%
ATCACTAGATTCTACTGGCC+CGG + chr7_3:21970075-21970094 None:intergenic 45.0%
ATGCCGCGACTTGTAAATGT+CGG - chr7_3:21970251-21970270 Msa1096910:five_prime_UTR 45.0%
TTCCCGACATTTACAAGTCG+CGG + chr7_3:21970257-21970276 None:intergenic 45.0%
CCAATGAAGTATGACTAGGG+GGG - chr7_3:21970428-21970447 Msa1096910:five_prime_UTR 45.0%
! GAGGTTGATTGTGCCATGTG+TGG + chr7_3:21967919-21967938 None:intergenic 50.0%
!! GGAGCCTGTTCATTTTTGGG+GGG - chr7_3:21968088-21968107 Msa1096910:CDS 50.0%
CCGTTAGATCCCATGCTTAG+TGG - chr7_3:21969259-21969278 Msa1096910:intron 50.0%
GAGGAGTGAGACAAAGACCA+TGG - chr7_3:21969707-21969726 Msa1096910:intron 50.0%
GGAGTGAGACAAAGACCATG+GGG - chr7_3:21969709-21969728 Msa1096910:intron 50.0%
TGAAGGAGATCGTCAACCAC+CGG - chr7_3:21970053-21970072 Msa1096910:intron 50.0%
TGCCGCGACTTGTAAATGTC+GGG - chr7_3:21970252-21970271 Msa1096910:five_prime_UTR 50.0%
AAATGTCGGGAATCCCTGCA+TGG - chr7_3:21970265-21970284 Msa1096910:five_prime_UTR 50.0%
! AATCCCTGCATGGTAGTGCA+TGG - chr7_3:21970275-21970294 Msa1096910:five_prime_UTR 50.0%
CTACCATGCACTACCATGCA+GGG + chr7_3:21970281-21970300 None:intergenic 50.0%
CCCCCCTAGTCATACTTCAT+TGG + chr7_3:21970431-21970450 None:intergenic 50.0%
! TCAGCTGCCCATTTTCCCCA+TGG + chr7_3:21969727-21969746 None:intergenic 55.0%
GAAGGAGATCGTCAACCACC+GGG - chr7_3:21970054-21970073 Msa1096910:intron 55.0%
ACTAGATTCTACTGGCCCGG+TGG + chr7_3:21970072-21970091 None:intergenic 55.0%
GCTACCATGCACTACCATGC+AGG + chr7_3:21970282-21970301 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 21967593 21970478 21967593 ID=Msa1096910;Name=Msa1096910
chr7_3 mRNA 21967593 21970478 21967593 ID=Msa1096910-mRNA-1;Parent=Msa1096910;Name=Msa1096910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=272|1|1|1|1|1|2|395|175
chr7_3 exon 21967593 21968388 21967593 ID=Msa1096910-mRNA-1:exon:4805;Parent=Msa1096910-mRNA-1
chr7_3 exon 21970080 21970478 21970080 ID=Msa1096910-mRNA-1:exon:4804;Parent=Msa1096910-mRNA-1
chr7_3 five_prime_UTR 21970207 21970478 21970207 ID=Msa1096910-mRNA-1:five_prime_utr;Parent=Msa1096910-mRNA-1
chr7_3 CDS 21970080 21970206 21970080 ID=Msa1096910-mRNA-1:cds;Parent=Msa1096910-mRNA-1
chr7_3 CDS 21967988 21968388 21967988 ID=Msa1096910-mRNA-1:cds;Parent=Msa1096910-mRNA-1
chr7_3 three_prime_UTR 21967593 21967987 21967593 ID=Msa1096910-mRNA-1:three_prime_utr;Parent=Msa1096910-mRNA-1
Gene Sequence

>Msa1096910

ATGGTTTCTGCTCTCTCTCAAGTCATTGGAACATCTACCAATCATAATAACCCACACATGGCACAATCAACCTCAACTACTATGGTCAATGAAGAATCTCAACCACCTCAACCTCTTATAGATCAAGAGACCAAAAAGAAACCACACTATAGAGGAGTGAGACAAAGACCATGGGGAAAATGGGCAGCTGAAATACGTGACCCAAAAAAAGCAGCTAGAGTTTGGTTAGGAACATTTGATACAGCTGAAGATGCAGCTCTTGCATATGACAAAGCTGCACTCAAATTCAAAGGCACAAAAGCTAAGCTTAATTTCCCTGAAAGAGTTGTTCAATGCAACAGTTCTAGTTCTAGTGCTAATAGTGCAATTCAACAAAGTGGTTCTATTTCTAATTCTCATGATCAACAAGTTTTCCCAAACTTGTTTCAGTATGCTCAGATTCTAGAAAGTGATGCTGAATTCCCTTATTATGCATCTCATCTTTTCAATCAACAACATGAAGGAGATCGTCAACCACCGGGCCAGTAG
Protein sequence

>Msa1096910

MVSALSQVIGTSTNHNNPHMAQSTSTTMVNEESQPPQPLIDQETKKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGTKAKLNFPERVVQCNSSSSSANSAIQQSGSISNSHDQQVFPNLFQYAQILESDAEFPYYASHLFNQQHEGDRQPPGQ*