AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1140250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1140250 MtrunA17_Chr7g0221471 89.266 177 16 2 1 175 1 176 5.48e-115 323
Msa1140250 MtrunA17_Chr7g0221501 88.136 177 18 2 1 175 1 176 1.34e-106 302
Msa1140250 MtrunA17_Chr3g0131601 55.484 155 51 5 1 144 33 180 3.06e-37 129
Msa1140250 MtrunA17_Chr8g0383591 62.637 91 25 1 41 122 135 225 7.21e-32 116
Msa1140250 MtrunA17_Chr2g0334031 50.000 108 53 1 1 108 68 174 1.39e-30 114
Msa1140250 MtrunA17_Chr6g0461941 53.378 148 52 3 33 163 2 149 2.06e-30 110
Msa1140250 MtrunA17_Chr4g0044871 43.511 131 50 1 1 107 22 152 3.96e-30 110
Msa1140250 MtrunA17_Chr4g0044881 75.410 61 15 0 47 107 110 170 3.48e-29 107
Msa1140250 MtrunA17_Chr4g0055761 70.667 75 20 2 37 110 132 205 3.81e-29 108
Msa1140250 MtrunA17_Chr4g0044911 78.947 57 12 0 51 107 96 152 4.65e-29 107
Msa1140250 MtrunA17_Chr4g0044901 78.947 57 12 0 51 107 96 152 4.83e-29 107
Msa1140250 MtrunA17_Chr2g0316931 56.667 90 38 1 29 117 8 97 1.36e-28 105
Msa1140250 MtrunA17_Chr4g0046161 60.227 88 30 3 22 107 30 114 2.65e-28 102
Msa1140250 MtrunA17_Chr8g0344961 66.197 71 24 0 38 108 111 181 2.69e-28 108
Msa1140250 MtrunA17_Chr1g0195151 63.750 80 21 2 34 107 56 133 3.21e-28 106
Msa1140250 MtrunA17_Chr2g0283171 66.667 69 22 1 48 115 60 128 8.93e-28 101
Msa1140250 MtrunA17_Chr2g0283181 71.429 70 18 2 48 115 146 215 9.31e-28 105
Msa1140250 MtrunA17_Chr8g0375031 57.143 91 35 2 48 134 122 212 1.04e-27 103
Msa1140250 MtrunA17_Chr8g0335331 70.769 65 18 1 47 110 121 185 1.46e-27 102
Msa1140250 MtrunA17_Chr8g0335311 72.131 61 16 1 51 110 96 156 1.03e-26 100
Msa1140250 MtrunA17_Chr4g0026881 53.608 97 37 3 21 112 66 159 1.27e-26 100
Msa1140250 MtrunA17_Chr5g0438801 53.846 91 42 0 17 107 17 107 1.50e-26 102
Msa1140250 MtrunA17_Chr2g0282651 72.131 61 17 0 47 107 66 126 2.08e-26 100
Msa1140250 MtrunA17_Chr4g0055781 58.333 84 31 2 44 126 95 175 3.38e-26 100
Msa1140250 MtrunA17_Chr2g0295421 70.968 62 18 0 47 108 92 153 4.27e-26 100
Msa1140250 MtrunA17_Chr5g0438831 73.770 61 16 0 47 107 42 102 5.58e-26 100
Msa1140250 MtrunA17_Chr3g0099871 73.770 61 16 0 47 107 23 83 8.57e-26 98.6
Msa1140250 MtrunA17_Chr8g0335321 70.492 61 17 1 51 110 96 156 9.18e-26 98.2
Msa1140250 MtrunA17_Chr2g0282621 70.492 61 18 0 47 107 11 71 1.16e-25 96.7
Msa1140250 MtrunA17_Chr7g0250711 66.667 72 20 2 43 110 49 120 1.85e-25 97.1
Msa1140250 MtrunA17_Chr7g0250731 68.116 69 21 1 50 117 60 128 1.85e-25 97.1
Msa1140250 MtrunA17_Chr3g0129421 67.416 89 27 1 43 131 162 248 2.59e-25 99.8
Msa1140250 MtrunA17_Chr4g0055801 69.118 68 20 1 44 110 147 214 2.74e-25 99.0
Msa1140250 MtrunA17_Chr7g0250721 72.581 62 16 1 50 110 60 121 2.78e-25 96.7
Msa1140250 MtrunA17_Chr2g0324131 59.722 72 29 0 40 111 207 278 1.12e-24 99.0
Msa1140250 MtrunA17_Chr1g0184081 59.740 77 30 1 32 107 2 78 1.33e-24 93.2
Msa1140250 MtrunA17_Chr1g0170531 70.968 62 17 1 50 110 88 149 1.37e-24 95.5
Msa1140250 MtrunA17_Chr3g0115631 75.439 57 14 0 51 107 150 206 1.78e-24 97.4
Msa1140250 MtrunA17_Chr4g0026931 60.000 80 29 2 34 112 116 193 1.81e-24 96.3
Msa1140250 MtrunA17_Chr1g0158971 65.152 66 19 1 51 112 115 180 2.11e-24 97.4
Msa1140250 MtrunA17_Chr5g0396911 71.429 56 16 0 51 106 112 167 2.88e-24 96.3
Msa1140250 MtrunA17_Chr5g0425561 63.014 73 22 1 35 107 162 229 3.18e-24 97.1
Msa1140250 MtrunA17_Chr1g0196871 71.186 59 16 1 50 107 15 73 4.55e-24 90.5
Msa1140250 MtrunA17_Chr1g0196781 58.904 73 28 1 51 121 152 224 4.83e-24 95.9
Msa1140250 MtrunA17_Chr5g0432821 37.500 128 79 1 30 156 103 230 8.94e-24 94.4
Msa1140250 MtrunA17_Chr8g0387801 54.321 81 34 1 51 128 107 187 1.40e-23 94.4
Msa1140250 MtrunA17_Chr3g0140161 62.121 66 25 0 43 108 35 100 2.40e-23 91.3
Msa1140250 MtrunA17_Chr1g0186731 55.844 77 33 1 32 107 2 78 2.85e-23 89.7
Msa1140250 MtrunA17_Chr8g0382491 70.175 57 17 0 51 107 113 169 3.15e-23 93.2
Msa1140250 MtrunA17_Chr8g0367911 69.643 56 17 0 51 106 44 99 3.57e-23 93.2
Msa1140250 MtrunA17_Chr7g0261101 66.154 65 21 1 44 107 13 77 3.59e-23 89.7
Msa1140250 MtrunA17_Chr3g0126321 67.857 56 18 0 51 106 113 168 3.69e-23 94.0
Msa1140250 MtrunA17_Chr6g0486701 56.944 72 31 0 49 120 42 113 3.93e-23 91.3
Msa1140250 MtrunA17_Chr1g0184071 48.936 94 43 2 18 106 32 125 6.36e-23 89.7
Msa1140250 MtrunA17_Chr2g0323171 61.667 60 23 0 48 107 62 121 6.69e-23 90.1
Msa1140250 MtrunA17_Chr4g0023411 52.941 85 36 1 48 128 62 146 8.47e-23 90.1
Msa1140250 MtrunA17_Chr3g0134161 44.118 102 55 2 24 124 18 118 9.40e-23 89.4
Msa1140250 MtrunA17_Chr7g0261151 55.844 77 33 1 33 108 2 78 1.28e-22 87.8
Msa1140250 MtrunA17_Chr1g0184031 58.571 70 28 1 44 112 77 146 1.82e-22 89.7
Msa1140250 MtrunA17_Chr7g0257911 60.606 66 26 0 51 116 31 96 1.98e-22 90.9
Msa1140250 MtrunA17_Chr5g0399441 56.757 74 32 0 47 120 24 97 2.25e-22 88.6
Msa1140250 MtrunA17_Chr4g0055951 61.905 63 24 0 46 108 69 131 4.72e-22 89.4
Msa1140250 MtrunA17_Chr2g0297331 65.000 60 20 1 50 108 13 72 5.86e-22 86.3
Msa1140250 MtrunA17_Chr1g0183981 60.870 69 25 2 45 112 70 137 8.40e-22 87.8
Msa1140250 MtrunA17_Chr1g0184011 55.556 72 31 1 42 112 75 146 8.85e-22 88.2
Msa1140250 MtrunA17_Chr3g0137174 64.912 57 20 0 51 107 8 64 1.09e-21 87.0
Msa1140250 MtrunA17_Chr5g0437371 67.857 56 18 0 51 106 66 121 1.13e-21 89.7
Msa1140250 MtrunA17_Chr8g0334801 64.062 64 23 0 49 112 50 113 1.33e-21 87.0
Msa1140250 MtrunA17_Chr8g0390091 56.944 72 31 0 49 120 35 106 1.45e-21 87.8
Msa1140250 MtrunA17_Chr7g0232261 63.934 61 22 0 47 107 57 117 1.62e-21 87.4
Msa1140250 MtrunA17_Chr4g0066931 64.286 56 20 0 51 106 53 108 1.65e-21 89.4
Msa1140250 MtrunA17_Chr7g0275841 59.375 64 26 0 47 110 24 87 1.66e-21 85.9
Msa1140250 MtrunA17_Chr7g0265851 63.934 61 22 0 47 107 20 80 1.68e-21 86.7
Msa1140250 MtrunA17_Chr5g0412641 67.857 56 18 0 51 106 46 101 2.09e-21 89.4
Msa1140250 MtrunA17_Chr2g0286161 64.286 56 20 0 51 106 50 105 2.21e-21 88.2
Msa1140250 MtrunA17_Chr2g0331231 61.667 60 23 0 49 108 39 98 2.59e-21 86.3
Msa1140250 MtrunA17_Chr1g0184061 50.000 94 35 4 24 106 41 133 4.02e-21 86.3
Msa1140250 MtrunA17_Chr1g0186671 65.517 58 19 1 51 107 19 76 4.55e-21 84.0
Msa1140250 MtrunA17_Chr5g0437671 65.517 58 20 0 51 108 85 142 4.89e-21 88.6
Msa1140250 MtrunA17_Chr4g0002631 64.912 57 20 0 51 107 8 64 5.00e-21 85.5
Msa1140250 MtrunA17_Chr7g0252381 66.071 56 19 0 51 106 42 97 5.15e-21 87.0
Msa1140250 MtrunA17_Chr4g0003421 58.108 74 28 1 47 120 36 106 5.63e-21 86.3
Msa1140250 MtrunA17_Chr1g0189941 59.649 57 23 0 50 106 23 79 8.35e-21 84.0
Msa1140250 MtrunA17_Chr8g0340311 62.295 61 23 0 47 107 43 103 9.63e-21 84.7
Msa1140250 MtrunA17_Chr4g0062551 63.158 57 21 0 51 107 53 109 2.89e-20 82.0
Msa1140250 MtrunA17_Chr8g0346741 56.250 64 28 0 47 110 35 98 4.35e-20 82.4
Msa1140250 MtrunA17_Chr4g0063751 63.158 57 21 0 51 107 7 63 5.49e-20 83.2
Msa1140250 MtrunA17_Chr1g0183961 65.217 69 23 1 51 118 27 95 8.14e-20 80.9
Msa1140250 MtrunA17_Chr2g0333011 61.667 60 23 0 51 110 7 66 8.39e-20 81.6
Msa1140250 MtrunA17_Chr7g0261181 55.056 89 35 2 48 135 10 94 1.05e-19 80.1
Msa1140250 MtrunA17_Chr4g0062161 63.158 57 21 0 51 107 53 109 1.06e-19 82.0
Msa1140250 MtrunA17_Chr1g0150661 41.111 90 53 0 18 107 2 91 1.62e-19 82.0
Msa1140250 MtrunA17_Chr1g0200931 48.718 78 36 2 33 106 2 79 1.71e-19 80.1
Msa1140250 MtrunA17_Chr7g0243431 62.500 64 17 1 50 106 77 140 3.01e-19 84.0
Msa1140250 MtrunA17_Chr7g0261201 54.000 100 42 3 17 112 61 160 3.89e-19 81.3
Msa1140250 MtrunA17_Chr7g0217991 41.667 96 52 1 30 125 21 112 4.27e-19 83.6
Msa1140250 MtrunA17_Chr1g0183931 54.444 90 29 2 24 112 85 163 6.85e-19 80.9
Msa1140250 MtrunA17_Chr1g0153151 46.835 79 41 1 51 129 44 121 7.89e-19 79.3
Msa1140250 MtrunA17_Chr6g0486711 58.108 74 31 0 47 120 45 118 1.04e-18 80.1
Msa1140250 MtrunA17_Chr1g0186681 61.017 59 21 1 51 107 19 77 1.09e-18 77.8
Msa1140250 MtrunA17_Chr1g0170471 62.069 58 21 1 58 114 90 147 1.42e-18 78.6
Msa1140250 MtrunA17_Chr5g0401871 43.529 85 43 1 45 129 19 98 2.50e-18 78.2
Msa1140250 MtrunA17_Chr4g0017851 55.000 60 27 0 51 110 118 177 3.37e-18 80.1
Msa1140250 MtrunA17_Chr8g0378811 54.839 62 28 0 45 106 49 110 3.52e-18 79.3
Msa1140250 MtrunA17_Chr6g0464581 81.132 53 10 0 58 110 187 239 4.90e-18 80.1
Msa1140250 MtrunA17_Chr4g0057241 50.667 75 36 1 46 120 10 83 5.22e-18 76.6
Msa1140250 MtrunA17_Chr6g0453661 54.098 61 28 0 46 106 33 93 6.05e-18 80.1
Msa1140250 MtrunA17_Chr1g0146191 51.190 84 41 0 24 107 20 103 6.69e-18 78.6
Msa1140250 MtrunA17_Chr1g0201671 45.690 116 42 2 58 152 146 261 7.12e-18 79.7
Msa1140250 MtrunA17_Chr1g0150671 41.111 90 49 1 18 107 17 102 1.17e-17 78.2
Msa1140250 MtrunA17_Chr6g0473941 48.750 80 39 1 33 110 13 92 1.28e-17 76.6
Msa1140250 MtrunA17_Chr1g0186741 57.895 76 31 1 46 120 68 143 1.59e-17 76.6
Msa1140250 MtrunA17_Chr1g0150631 39.604 101 54 2 21 114 1 101 2.37e-17 76.6
Msa1140250 MtrunA17_Chr3g0083501 60.784 51 20 0 58 108 2 52 2.52e-17 72.4
Msa1140250 MtrunA17_Chr1g0150691 45.333 75 41 0 51 125 22 96 3.44e-17 75.9
Msa1140250 MtrunA17_Chr7g0253424 53.333 60 28 0 51 110 39 98 3.71e-17 76.6
Msa1140250 MtrunA17_Chr2g0301191 54.386 57 26 0 51 107 19 75 3.93e-17 75.5
Msa1140250 MtrunA17_Chr8g0350701 55.556 63 25 1 47 106 20 82 4.00e-17 77.0
Msa1140250 MtrunA17_Chr7g0261171 63.235 68 24 1 46 112 80 147 6.51e-17 75.5
Msa1140250 MtrunA17_Chr5g0396191 63.793 58 21 0 51 108 11 68 6.53e-17 74.3
Msa1140250 MtrunA17_Chr1g0155751 67.241 58 19 0 51 108 39 96 8.02e-17 75.9
Msa1140250 MtrunA17_Chr1g0203861 55.000 60 27 0 47 106 40 99 1.06e-16 74.3
Msa1140250 MtrunA17_Chr6g0473861 56.452 62 27 0 47 108 59 120 1.84e-16 74.7
Msa1140250 MtrunA17_Chr4g0042761 44.156 77 43 0 30 106 27 103 1.96e-16 75.1
Msa1140250 MtrunA17_Chr8g0345531 62.500 48 18 0 51 98 116 163 2.04e-16 75.5
Msa1140250 MtrunA17_Chr1g0209891 66.667 48 16 0 51 98 54 101 2.15e-16 75.1
Msa1140250 MtrunA17_Chr6g0473931 48.052 77 38 1 34 108 14 90 2.29e-16 73.2
Msa1140250 MtrunA17_Chr2g0301171 52.632 57 27 0 51 107 19 75 2.46e-16 73.2
Msa1140250 MtrunA17_Chr6g0461271 50.794 63 31 0 48 110 30 92 2.92e-16 74.7
Msa1140250 MtrunA17_Chr6g0473741 53.226 62 29 0 47 108 62 123 4.07e-16 73.2
Msa1140250 MtrunA17_Chr8g0345551 64.583 48 17 0 51 98 117 164 5.76e-16 74.3
Msa1140250 MtrunA17_Chr3g0136551 43.529 85 44 2 42 124 58 140 6.32e-16 73.2
Msa1140250 MtrunA17_Chr6g0473771 49.231 65 33 0 44 108 36 100 6.91e-16 70.1
Msa1140250 MtrunA17_Chr3g0142081 60.000 75 25 1 51 125 39 108 7.54e-16 72.4
Msa1140250 MtrunA17_Chr6g0473881 51.613 62 30 0 47 108 106 167 8.12e-16 73.6
Msa1140250 MtrunA17_Chr2g0321071 53.030 66 29 2 47 110 43 108 8.28e-16 72.4
Msa1140250 MtrunA17_Chr6g0473961 51.562 64 31 0 47 110 50 113 8.70e-16 72.0
Msa1140250 MtrunA17_Chr6g0473971 50.000 64 32 0 47 110 50 113 1.22e-15 72.0
Msa1140250 MtrunA17_Chr6g0473981 51.562 64 31 0 47 110 50 113 1.51e-15 72.0
Msa1140250 MtrunA17_Chr1g0167781 60.294 68 26 1 46 112 77 144 1.56e-15 71.2
Msa1140250 MtrunA17_Chr5g0396171 46.875 64 34 0 53 116 26 89 2.15e-15 68.2
Msa1140250 MtrunA17_Chr6g0473781 53.333 60 28 0 47 106 53 112 2.35e-15 70.9
Msa1140250 MtrunA17_Chr2g0301181 50.877 57 28 0 51 107 19 75 2.40e-15 71.2
Msa1140250 MtrunA17_Chr1g0205961 55.000 60 23 1 51 106 115 174 2.43e-15 72.4
Msa1140250 MtrunA17_Chr6g0474001 43.902 82 44 1 47 126 50 131 1.07e-14 69.7
Msa1140250 MtrunA17_Chr1g0149331 63.158 57 21 0 51 107 7 63 1.34e-14 68.6
Msa1140250 MtrunA17_Chr5g0396301 53.333 60 26 1 51 108 18 77 3.73e-14 66.6
Msa1140250 MtrunA17_Chr3g0137831 58.730 63 26 0 45 107 2 64 5.04e-14 67.0
Msa1140250 MtrunA17_Chr3g0136541 44.595 74 39 1 53 124 42 115 5.35e-14 67.4
Msa1140250 MtrunA17_Chr5g0438841 50.000 70 29 1 44 107 3 72 5.43e-14 66.2
Msa1140250 MtrunA17_Chr4g0002771 48.936 94 39 2 19 106 42 132 5.45e-14 67.0
Msa1140250 MtrunA17_Chr7g0225131 50.877 57 25 1 51 107 29 82 3.89e-13 62.0
Msa1140250 MtrunA17_Chr5g0424051 43.434 99 46 3 18 107 56 153 4.36e-13 65.9
Msa1140250 MtrunA17_Chr5g0396741 67.213 61 20 0 47 107 113 173 5.19e-13 65.5
Msa1140250 MtrunA17_Chr5g0398081 40.964 83 43 1 47 123 45 127 7.97e-13 64.3
Msa1140250 MtrunA17_Chr5g0423811 41.053 95 36 2 26 103 66 157 1.57e-12 64.3
Msa1140250 MtrunA17_Chr5g0396181 53.333 60 28 0 51 110 21 80 2.76e-12 62.0
Msa1140250 MtrunA17_Chr5g0398091 47.059 68 30 1 47 108 50 117 3.12e-12 62.8
Msa1140250 MtrunA17_Chr5g0398061 40.964 83 43 1 47 123 45 127 4.29e-12 62.0
Msa1140250 MtrunA17_Chr1g0203831 57.377 61 25 1 51 111 57 116 6.40e-12 61.2
Msa1140250 MtrunA17_Chr3g0114761 46.250 80 39 2 30 107 6 83 8.83e-12 61.2
Msa1140250 MtrunA17_Chr6g0473791 49.057 53 27 0 47 99 53 105 1.24e-11 59.7
Msa1140250 MtrunA17_Chr8g0337801 57.778 45 19 0 62 106 169 213 2.40e-11 60.8
Msa1140250 MtrunA17_Chr1g0186721 56.897 58 24 1 51 107 17 74 5.46e-11 57.0
Msa1140250 MtrunA17_Chr1g0186711 55.172 58 25 1 51 107 17 74 6.32e-11 57.0
Msa1140250 MtrunA17_Chr3g0108241 56.897 58 24 1 51 107 115 172 6.41e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1140250 AT5G13330.1 50.000 178 61 7 1 162 1 166 2.07e-43 144
Msa1140250 AT5G61890.1 59.055 127 48 2 1 123 36 162 5.13e-41 139
Msa1140250 AT5G07310.1 62.602 123 40 3 1 121 44 162 6.10e-39 134
Msa1140250 AT2G33710.1 81.250 64 12 0 47 110 66 129 9.09e-34 119
Msa1140250 AT2G33710.2 81.250 64 12 0 47 110 66 129 1.04e-33 119
Msa1140250 AT2G47520.1 45.736 129 64 2 42 165 41 168 4.04e-30 108
Msa1140250 AT5G47220.1 65.000 80 27 1 32 110 98 177 1.78e-29 108
Msa1140250 AT4G17500.1 75.385 65 15 1 47 110 144 208 1.21e-28 107
Msa1140250 AT5G44210.1 55.172 87 36 1 45 131 27 110 1.54e-28 105
Msa1140250 AT3G16770.1 71.429 63 18 0 46 108 74 136 5.13e-28 105
Msa1140250 AT2G44840.1 66.667 69 22 1 46 113 87 155 1.45e-27 103
Msa1140250 AT1G43160.1 45.562 169 59 7 1 148 1 157 1.48e-27 102
Msa1140250 AT1G36060.1 51.887 106 44 2 23 121 108 213 3.14e-27 104
Msa1140250 AT1G28370.1 53.846 91 37 1 50 140 19 104 1.44e-26 99.4
Msa1140250 AT5G51190.1 67.123 73 22 2 36 107 58 129 1.49e-26 100
Msa1140250 AT5G50080.2 56.731 104 43 2 46 149 81 182 1.74e-26 100
Msa1140250 AT5G50080.1 56.731 104 43 2 46 149 72 173 1.84e-26 100
Msa1140250 AT4G11140.1 60.274 73 29 0 51 123 87 159 2.03e-26 102
Msa1140250 AT1G28370.2 53.846 91 37 1 50 140 57 142 2.20e-26 99.8
Msa1140250 AT3G15210.1 72.131 61 17 0 47 107 21 81 7.63e-26 99.0
Msa1140250 AT5G47230.1 68.056 72 20 2 40 110 147 216 8.05e-26 100
Msa1140250 AT3G20310.1 58.333 84 29 2 47 130 23 100 1.12e-25 99.0
Msa1140250 AT1G72360.1 63.636 66 24 0 42 107 16 81 1.44e-25 97.8
Msa1140250 AT1G28360.1 70.492 61 18 0 47 107 8 68 2.41e-25 96.7
Msa1140250 AT1G72360.2 63.636 66 24 0 42 107 67 132 2.83e-25 98.6
Msa1140250 AT1G72360.3 63.636 66 24 0 42 107 65 130 2.93e-25 98.2
Msa1140250 AT4G28140.1 62.857 70 26 0 51 120 143 212 4.09e-25 98.6
Msa1140250 AT2G20880.1 55.294 85 35 2 29 111 164 247 6.75e-25 99.0
Msa1140250 AT1G03800.1 64.062 64 23 0 44 107 46 109 7.21e-25 97.1
Msa1140250 AT2G22200.1 66.154 65 22 0 46 110 66 130 8.05e-25 97.1
Msa1140250 AT5G65130.2 52.041 98 39 2 41 133 103 197 8.95e-25 97.4
Msa1140250 AT1G22190.1 72.414 58 16 0 51 108 83 140 9.63e-25 97.1
Msa1140250 AT5G65130.1 52.041 98 39 2 41 133 101 195 9.91e-25 97.4
Msa1140250 AT5G64750.1 83.019 53 9 0 58 110 192 244 1.25e-24 99.0
Msa1140250 AT4G39780.1 59.722 72 29 0 37 108 79 150 2.01e-24 96.3
Msa1140250 AT4G27950.1 57.143 77 31 1 30 106 99 173 5.20e-24 96.3
Msa1140250 AT2G35700.1 65.625 64 22 0 45 108 39 102 5.46e-24 93.6
Msa1140250 AT1G78080.1 73.684 57 15 0 51 107 152 208 5.75e-24 96.3
Msa1140250 AT3G57600.1 53.333 90 40 1 50 139 27 114 5.83e-24 95.1
Msa1140250 AT4G17490.1 58.537 82 30 2 37 114 120 201 6.35e-24 95.1
Msa1140250 AT4G32800.1 62.121 66 25 0 43 108 11 76 6.85e-24 94.0
Msa1140250 AT3G23240.1 47.170 106 49 2 14 112 39 144 7.07e-24 93.6
Msa1140250 AT5G61600.1 55.128 78 34 1 50 126 87 164 7.83e-24 94.4
Msa1140250 AT5G07580.1 64.706 68 22 2 41 107 101 167 1.12e-23 92.8
Msa1140250 AT2G31230.1 53.333 90 36 2 29 112 59 148 2.86e-23 92.8
Msa1140250 AT1G75490.1 65.000 60 21 0 51 110 42 101 3.50e-23 91.7
Msa1140250 AT3G61630.1 54.348 92 36 2 32 118 87 177 3.90e-23 93.6
Msa1140250 AT1G50640.1 68.852 61 19 0 47 107 24 84 5.70e-23 91.7
Msa1140250 AT4G13620.1 59.722 72 29 0 51 122 232 303 9.61e-23 93.6
Msa1140250 AT4G16750.1 62.500 64 24 0 45 108 34 97 1.26e-22 89.4
Msa1140250 AT5G11590.1 66.129 62 21 0 47 108 47 108 1.70e-22 90.5
Msa1140250 AT2G46310.1 64.516 62 22 0 45 106 93 154 1.84e-22 91.7
Msa1140250 AT5G53290.1 66.071 56 19 0 51 106 125 180 1.94e-22 92.4
Msa1140250 AT3G23230.1 64.516 62 21 1 47 107 16 77 2.15e-22 87.8
Msa1140250 AT2G44940.1 64.516 62 22 0 47 108 96 157 2.61e-22 91.3
Msa1140250 AT5G43410.1 70.690 58 16 1 51 107 15 72 3.58e-22 87.0
Msa1140250 AT3G16280.2 46.465 99 41 1 22 108 38 136 3.78e-22 90.1
Msa1140250 AT3G16280.1 46.465 99 41 1 22 108 20 118 4.22e-22 89.4
Msa1140250 AT5G13910.1 64.912 57 20 0 50 106 19 75 4.72e-22 89.0
Msa1140250 AT2G40340.2 51.190 84 39 1 51 134 14 95 4.85e-22 90.1
Msa1140250 AT2G40340.5 51.190 84 39 1 51 134 14 95 4.85e-22 90.1
Msa1140250 AT2G40340.4 51.190 84 39 1 51 134 14 95 4.85e-22 90.1
Msa1140250 AT1G46768.3 42.391 92 53 0 21 112 1 92 5.45e-22 86.7
Msa1140250 AT4G23750.2 66.071 56 19 0 51 106 122 177 6.17e-22 90.9
Msa1140250 AT4G23750.1 66.071 56 19 0 51 106 122 177 6.17e-22 90.9
Msa1140250 AT1G12980.1 68.421 57 18 0 50 106 56 112 6.92e-22 90.5
Msa1140250 AT1G46768.1 42.391 92 53 0 21 112 1 92 8.31e-22 86.7
Msa1140250 AT1G46768.2 42.391 92 53 0 21 112 1 92 8.31e-22 86.7
Msa1140250 AT5G18560.1 66.071 56 19 0 51 106 55 110 1.04e-21 90.5
Msa1140250 AT2G40340.3 51.190 84 39 1 51 134 72 153 1.15e-21 89.4
Msa1140250 AT4G34410.1 80.702 57 11 0 51 107 136 192 1.23e-21 89.0
Msa1140250 AT1G71450.1 62.069 58 22 0 51 108 24 81 1.42e-21 87.0
Msa1140250 AT2G40340.1 51.190 84 39 1 51 134 72 153 1.53e-21 89.7
Msa1140250 AT2G40340.6 51.190 84 39 1 51 134 79 160 1.60e-21 89.7
Msa1140250 AT5G25390.2 43.750 112 48 3 51 159 7 106 2.48e-21 86.3
Msa1140250 AT2G25820.1 65.517 58 20 0 51 108 26 83 3.02e-21 87.0
Msa1140250 AT1G24590.1 67.857 56 18 0 51 106 58 113 4.90e-21 87.8
Msa1140250 AT3G11020.1 65.000 60 21 0 51 110 78 137 5.49e-21 88.2
Msa1140250 AT1G53910.1 67.143 70 23 0 46 115 120 189 5.54e-21 88.6
Msa1140250 AT1G53910.2 67.143 70 23 0 46 115 120 189 5.54e-21 88.6
Msa1140250 AT1G53910.3 67.143 70 23 0 46 115 118 187 5.89e-21 88.6
Msa1140250 AT1G01250.1 57.812 64 27 0 47 110 41 104 8.44e-21 85.1
Msa1140250 AT3G14230.3 74.603 63 16 0 46 108 118 180 9.13e-21 88.2
Msa1140250 AT3G14230.2 74.603 63 16 0 46 108 119 181 9.58e-21 88.2
Msa1140250 AT5G25810.1 47.674 86 45 0 23 108 8 93 9.86e-21 85.5
Msa1140250 AT3G14230.1 74.603 63 16 0 46 108 123 185 1.02e-20 87.8
Msa1140250 AT4G18450.1 66.129 62 19 2 47 106 106 167 1.36e-20 86.7
Msa1140250 AT1G28160.1 59.375 64 22 1 43 106 35 94 2.06e-20 85.1
Msa1140250 AT3G60490.1 57.971 69 23 1 51 113 71 139 2.53e-20 85.1
Msa1140250 AT2G36450.1 60.000 65 25 1 47 110 11 75 2.85e-20 83.6
Msa1140250 AT4G06746.1 53.968 63 29 0 50 112 35 97 4.13e-20 82.0
Msa1140250 AT1G15360.1 63.158 57 21 0 51 107 7 63 4.79e-20 83.2
Msa1140250 AT1G15360.2 63.158 57 21 0 51 107 7 63 4.79e-20 83.2
Msa1140250 AT5G18450.1 62.500 56 21 0 51 106 34 89 6.02e-20 85.1
Msa1140250 AT1G77200.1 62.121 66 25 0 43 108 35 100 7.65e-20 83.6
Msa1140250 AT5G25190.1 61.404 57 22 0 51 107 8 64 7.78e-20 82.4
Msa1140250 AT5G05410.2 50.000 82 37 1 51 128 79 160 1.03e-19 84.3
Msa1140250 AT3G50260.1 47.436 78 40 1 44 121 14 90 1.15e-19 81.3
Msa1140250 AT5G05410.1 50.000 82 37 1 51 128 79 160 1.56e-19 84.3
Msa1140250 AT4G36900.1 53.968 63 29 0 46 108 25 87 2.20e-19 81.6
Msa1140250 AT1G22985.1 61.290 62 21 1 48 106 72 133 3.27e-19 80.1
Msa1140250 AT1G71130.1 59.091 66 22 1 46 106 74 139 4.20e-19 79.7
Msa1140250 AT5G25390.1 42.857 112 46 4 51 159 7 103 4.67e-19 80.5
Msa1140250 AT2G23340.1 48.571 70 36 0 51 120 28 97 7.51e-19 79.7
Msa1140250 AT5G67190.1 53.968 63 29 0 46 108 16 78 1.20e-18 79.3
Msa1140250 AT4G25470.1 39.474 114 51 3 3 108 5 108 1.84e-18 79.3
Msa1140250 AT2G40350.2 57.895 57 24 0 51 107 74 130 1.91e-18 78.2
Msa1140250 AT2G40350.1 57.895 57 24 0 51 107 67 123 2.19e-18 77.8
Msa1140250 AT1G12890.1 62.500 56 21 0 51 106 21 76 2.80e-18 79.0
Msa1140250 AT4G25490.1 58.065 62 26 0 47 108 44 105 3.07e-18 79.0
Msa1140250 AT1G53170.1 58.228 79 31 1 47 125 27 103 3.30e-18 78.2
Msa1140250 AT4G31060.1 46.835 79 35 1 36 107 5 83 3.34e-18 78.2
Msa1140250 AT1G21910.1 57.895 57 24 0 51 107 50 106 3.36e-18 79.0
Msa1140250 AT4G25480.1 49.351 77 37 1 34 108 32 108 4.68e-18 78.6
Msa1140250 AT5G21960.1 51.562 64 31 0 45 108 1 64 6.27e-18 78.2
Msa1140250 AT1G06160.1 71.429 63 17 1 51 112 82 144 7.08e-18 78.6
Msa1140250 AT5G19790.1 45.455 77 42 0 30 106 1 77 8.28e-18 78.6
Msa1140250 AT5G67000.1 39.344 122 50 3 1 105 61 175 1.07e-17 76.6
Msa1140250 AT5G51990.1 58.333 60 25 0 47 106 50 109 1.96e-17 77.0
Msa1140250 AT1G19210.1 44.156 77 41 1 51 125 12 88 2.33e-17 75.9
Msa1140250 AT1G68550.1 51.163 86 33 3 46 124 110 193 3.51e-17 77.8
Msa1140250 AT1G68550.2 51.163 86 33 3 46 124 110 193 3.51e-17 77.8
Msa1140250 AT5G61590.1 71.186 59 16 1 50 107 106 164 4.87e-17 75.5
Msa1140250 AT3G23220.1 70.690 58 16 1 51 107 14 71 2.02e-16 72.4
Msa1140250 AT1G04370.1 72.414 58 15 1 51 107 20 77 2.17e-16 72.0
Msa1140250 AT1G74930.1 52.632 57 27 0 51 107 21 77 5.16e-16 72.4
Msa1140250 AT1G33760.1 60.000 60 24 0 51 110 20 79 8.64e-15 68.9
Msa1140250 AT2G40220.1 66.102 59 20 0 48 106 52 110 1.68e-14 70.5
Msa1140250 AT5G11190.1 64.912 57 20 0 51 107 7 63 2.65e-14 67.8
Msa1140250 AT1G64380.1 69.355 62 19 0 46 107 131 192 3.81e-14 69.3
Msa1140250 AT1G63030.2 51.667 60 29 0 47 106 26 85 4.87e-14 67.0
Msa1140250 AT1G63030.1 51.667 60 29 0 47 106 26 85 4.87e-14 67.0
Msa1140250 AT1G22810.1 37.607 117 55 4 51 153 14 126 9.64e-14 65.5
Msa1140250 AT1G12610.1 48.333 60 31 0 47 106 26 85 1.12e-13 66.6
Msa1140250 AT2G38340.1 56.716 67 21 1 50 108 69 135 1.24e-13 67.0
Msa1140250 AT1G12630.1 56.923 65 27 1 46 110 14 77 2.27e-13 65.5
Msa1140250 AT1G71520.1 58.140 43 18 0 51 93 14 56 1.26e-12 62.4
Msa1140250 AT1G77640.1 57.377 61 26 0 47 107 39 99 1.27e-12 64.3
Msa1140250 AT1G80580.1 62.295 61 23 0 46 106 111 171 2.07e-12 63.9
Msa1140250 AT1G49120.1 59.574 47 19 0 51 97 87 133 3.47e-12 63.9
Msa1140250 AT3G25890.1 62.222 45 17 0 53 97 133 177 4.94e-12 63.2
Msa1140250 AT3G25890.2 62.222 45 17 0 53 97 133 177 4.94e-12 63.2
Msa1140250 AT1G44830.1 53.968 63 28 1 47 108 31 93 1.12e-11 61.2
Msa1140250 AT1G68840.2 45.833 72 35 2 37 106 49 118 1.80e-11 62.0
Msa1140250 AT1G68840.1 45.833 72 35 2 37 106 49 118 1.80e-11 62.0
Msa1140250 AT2G20350.1 43.636 110 54 2 1 102 29 138 6.85e-11 58.2
Msa1140250 AT5G67010.1 35.106 94 51 1 1 84 30 123 7.35e-11 58.2

Find 79 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTTTGATGCTTATAATTA+TGG 0.170509 7_4:+11640206 Msa1140250:five_prime_UTR
TTGCATTGAACAACTCTTTC+AGG 0.178236 7_4:-11642661 None:intergenic
GGATTTATAAGTGTATTATT+TGG 0.213417 7_4:+11643142 Msa1140250:three_prime_UTR
AAAAGATGAGATGCATAATA+AGG 0.243026 7_4:-11642805 None:intergenic
CAAAATTGACAGAAATATTA+TGG 0.279794 7_4:-11643100 None:intergenic
TAGAATTAGATGCATAATTA+TGG 0.280746 7_4:-11640232 None:intergenic
GACAGAGACCATGGGGAAAA+TGG 0.284163 7_4:+11642506 Msa1140250:CDS
ATTATGCATCTAATTCTAAT+TGG 0.291806 7_4:+11640237 Msa1140250:five_prime_UTR
ATGTAAGAAAAGAGAGTATT+TGG 0.303207 7_4:-11643193 None:intergenic
GGCAACTTTCCATGCCTTCT+TGG 0.305541 7_4:-11640125 None:intergenic
CCATTCCAATGAAGTATATA+TGG 0.314979 7_4:+11643216 Msa1140250:three_prime_UTR
TGAGCATACTGAAACAAGTT+TGG 0.320431 7_4:-11642754 None:intergenic
TCTGCTCTCTCTCAAGTCAT+TGG 0.374696 7_4:+11640290 Msa1140250:CDS
AGTTTGATGCTTATAATTAT+GGG 0.377566 7_4:+11640207 Msa1140250:five_prime_UTR
TACCAAGTTTAAATATAAAC+TGG 0.398392 7_4:+11642995 Msa1140250:three_prime_UTR
ACAATCAACCTCAACAACTA+TGG 0.399207 7_4:+11640349 Msa1140250:CDS
ATACGGGATTTCATGATTGC+AGG 0.400948 7_4:-11642884 None:intergenic
GAGAAAGAGGAGTATGCATT+AGG 0.405853 7_4:+11640176 Msa1140250:five_prime_UTR
AGACCTAGCTAGTATAAGTA+AGG 0.421083 7_4:+11640028 Msa1140250:five_prime_UTR
ATATCTCAACTGCATGAATA+CGG 0.428119 7_4:-11642901 None:intergenic
GTGTGGGTTATTATTATGAT+TGG 0.433380 7_4:-11640321 None:intergenic
TGCATTGAACAACTCTTTCA+GGG 0.439733 7_4:-11642660 None:intergenic
GAGCATACTGAAACAAGTTT+GGG 0.446792 7_4:-11642753 None:intergenic
AGTCACCATATATACTTCAT+TGG 0.451410 7_4:-11643221 None:intergenic
ACAGAGACCATGGGGAAAAT+GGG 0.460862 7_4:+11642507 Msa1140250:CDS
AAAGATGAGATGCATAATAA+GGG 0.465199 7_4:-11642804 None:intergenic
TGAAGTATATATGGTGACTA+GGG 0.471146 7_4:+11643225 Msa1140250:three_prime_UTR
AAAGCAGCTAGAGTTTGGTT+AGG 0.477187 7_4:+11642553 Msa1140250:CDS
TTCATTGACCATAGTTGTTG+AGG 0.484975 7_4:-11640357 None:intergenic
GAGAAAATCAAATCTAAAAG+TGG 0.487004 7_4:+11640100 Msa1140250:five_prime_UTR
ATGGTAGACAAATCAGTGTC+TGG 0.487271 7_4:-11640263 None:intergenic
ATCAGAGGCTAAAGAGAAAG+AGG 0.488821 7_4:+11640163 Msa1140250:five_prime_UTR
GACCAGTTTATATTTAAACT+TGG 0.499232 7_4:-11642997 None:intergenic
GCTACCATGCACTACCATGC+AGG 0.505228 7_4:-11643072 None:intergenic
ATCACTAGATTCTACTGGCC+CGG 0.509965 7_4:-11642859 None:intergenic
TGACAGAAATATTATGGATG+TGG 0.512665 7_4:-11643094 None:intergenic
TGCCGCGACTTGTAAATGTC+GGG 0.522778 7_4:+11643045 Msa1140250:three_prime_UTR
CCTTGATCTAGAGGAGGTTG+AGG 0.535263 7_4:-11640392 None:intergenic
AGAAACAAACCTTGATCTAG+AGG 0.536098 7_4:-11640401 None:intergenic
CCATATATACTTCATTGGAA+TGG 0.541888 7_4:-11643216 None:intergenic
AGGTTGATTGTGCCATGTGT+GGG 0.542111 7_4:-11640337 None:intergenic
GAGGTTGATTGTGCCATGTG+TGG 0.544012 7_4:-11640338 None:intergenic
ATCTAAAAGTGGATCCAAGA+AGG 0.547535 7_4:+11640111 Msa1140250:five_prime_UTR
ATGAAGTATATATGGTGACT+AGG 0.547591 7_4:+11643224 Msa1140250:three_prime_UTR
GAGGAGTGAGACAGAGACCA+TGG 0.549706 7_4:+11642497 Msa1140250:CDS
TATCTCAACTGCATGAATAC+GGG 0.549874 7_4:-11642900 None:intergenic
TGTTCTAGAAACTAGAGTCA+AGG 0.557127 7_4:+11643121 Msa1140250:three_prime_UTR
AGGAAATCACTAGATTCTAC+TGG 0.559811 7_4:-11642864 None:intergenic
AATAGTGCAATTCAACAAAG+TGG 0.561647 7_4:+11642697 Msa1140250:CDS
TTGAGAGAGAGCAGAAACCA+TGG 0.565044 7_4:-11640282 None:intergenic
CCTCAACCTCCTCTAGATCA+AGG 0.566113 7_4:+11640392 Msa1140250:CDS
AAAGTGGATCCAAGAAGGCA+TGG 0.568948 7_4:+11640116 Msa1140250:five_prime_UTR
TGAAGGAGATCGTCAACCAC+CGG 0.578060 7_4:+11642840 Msa1140250:CDS
AGGAGTGAGACAGAGACCAT+GGG 0.579528 7_4:+11642498 Msa1140250:CDS
TTCCCGACATTTACAAGTCG+CGG 0.584444 7_4:-11643047 None:intergenic
TGCCCTTACTTATACTAGCT+AGG 0.590184 7_4:-11640031 None:intergenic
AAAGCTGCACTCAAATTCAA+AGG 0.590296 7_4:+11642616 Msa1140250:CDS
GTTGTATAATCAAGATTGAA+CGG 0.598230 7_4:+11642929 Msa1140250:three_prime_UTR
TCTGATGTTTGTGAAGATAG+TGG 0.598564 7_4:-11640146 None:intergenic
GACCTAGCTAGTATAAGTAA+GGG 0.598593 7_4:+11640029 Msa1140250:five_prime_UTR
ATGCCGCGACTTGTAAATGT+CGG 0.599631 7_4:+11643044 Msa1140250:three_prime_UTR
AGACACTGATTTGTCTACCA+TGG 0.603882 7_4:+11640265 Msa1140250:exon
TGATCTAGAGGAGGTTGAGG+TGG 0.605376 7_4:-11640389 None:intergenic
TTGACATGAATATGATCTTG+AGG 0.619992 7_4:-11640060 None:intergenic
GAAGGAGATCGTCAACCACC+GGG 0.620049 7_4:+11642841 Msa1140250:CDS
AAGTATATATGGTGACTAGG+GGG 0.621655 7_4:+11643227 Msa1140250:three_prime_UTR
CTACCATGCACTACCATGCA+GGG 0.622697 7_4:-11643071 None:intergenic
AGTATATATGGTGACTAGGG+GGG 0.629285 7_4:+11643228 Msa1140250:three_prime_UTR
GGTCGATCTTGATCATCGAA+TGG 0.631398 7_4:+11643016 Msa1140250:three_prime_UTR
AATCCCTGCATGGTAGTGCA+TGG 0.631510 7_4:+11643068 Msa1140250:three_prime_UTR
AACAAACCTTGATCTAGAGG+AGG 0.651253 7_4:-11640398 None:intergenic
AAATGTCGGGAATCCCTGCA+TGG 0.658029 7_4:+11643058 Msa1140250:three_prime_UTR
GAAGTATATATGGTGACTAG+GGG 0.659040 7_4:+11643226 Msa1140250:three_prime_UTR
TCATAATAATAACCCACACA+TGG 0.659589 7_4:+11640325 Msa1140250:CDS
TGTCTCACTCCTCTATAGTG+CGG 0.669612 7_4:-11642487 None:intergenic
TCATGCAGTTGAGATATCAG+TGG 0.670716 7_4:+11642907 Msa1140250:three_prime_UTR
ACTATCTTCACAAACATCAG+AGG 0.676164 7_4:+11640148 Msa1140250:five_prime_UTR
GGAGTGAGACAGAGACCATG+GGG 0.677981 7_4:+11642499 Msa1140250:CDS
ACTAGATTCTACTGGCCCGG+TGG 0.682011 7_4:-11642856 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTAATTAATTTTCTAAA+TGG + chr7_4:11640467-11640486 Msa1140250:intron 10.0%
!!! GTTTAATTAATTTTCTAAAT+GGG + chr7_4:11640468-11640487 Msa1140250:intron 10.0%
!!! ACTATAAATTCATTTTTTTA+AGG + chr7_4:11640928-11640947 Msa1140250:intron 10.0%
!! AATATTGTATAATATATGAA+GGG - chr7_4:11641021-11641040 None:intergenic 10.0%
!! AAATATTGTATAATATATGA+AGG - chr7_4:11641022-11641041 None:intergenic 10.0%
!!! TAACGATTTTTAAATTAAAA+TGG - chr7_4:11641420-11641439 None:intergenic 10.0%
!! CTAAAAAAAAAAAAAAAACT+AGG - chr7_4:11641514-11641533 None:intergenic 10.0%
!!! CTAGTTTTTTTTTTTTTTTT+AGG + chr7_4:11641512-11641531 Msa1140250:intron 10.0%
!! TTATTAATTATCTTATTCTA+AGG + chr7_4:11641863-11641882 Msa1140250:intron 10.0%
!!! ATTTTTTTAAGGTGATAATT+TGG + chr7_4:11640939-11640958 Msa1140250:intron 15.0%
!!! TTTTTTTAAGGTGATAATTT+GGG + chr7_4:11640940-11640959 Msa1140250:intron 15.0%
!! ATATTGTATAATATATGAAG+GGG - chr7_4:11641020-11641039 None:intergenic 15.0%
!! GACATTATACTATTAATATA+AGG + chr7_4:11641142-11641161 Msa1140250:intron 15.0%
!! AATATCTTGGTAAAAAAAAA+AGG - chr7_4:11641483-11641502 None:intergenic 15.0%
!! ATCAATGAAATATATTGTTA+CGG + chr7_4:11642281-11642300 Msa1140250:intron 15.0%
!! AGTTTGATGCTTATAATTAT+GGG + chr7_4:11640207-11640226 Msa1140250:five_prime_UTR 20.0%
!! TAGAATTAGATGCATAATTA+TGG - chr7_4:11640235-11640254 None:intergenic 20.0%
!! ATTATGCATCTAATTCTAAT+TGG + chr7_4:11640237-11640256 Msa1140250:five_prime_UTR 20.0%
!!! GGATAAATTTATGCTATTTT+TGG + chr7_4:11640489-11640508 Msa1140250:intron 20.0%
!!! TTATCATGACTACTTTTAAA+GGG - chr7_4:11640585-11640604 None:intergenic 20.0%
!!! ATTATCATGACTACTTTTAA+AGG - chr7_4:11640586-11640605 None:intergenic 20.0%
!!! AGTCATGATAATTTAGAATT+TGG + chr7_4:11640594-11640613 Msa1140250:intron 20.0%
!! TTTCGATCATGATTTAAATT+TGG + chr7_4:11640649-11640668 Msa1140250:intron 20.0%
!! TTATTTATCTCACGATTAAT+GGG - chr7_4:11640728-11640747 None:intergenic 20.0%
!! TTTATTTATCTCACGATTAA+TGG - chr7_4:11640729-11640748 None:intergenic 20.0%
!!! TGCTTCTTTCTTTTTATATA+TGG + chr7_4:11640869-11640888 Msa1140250:intron 20.0%
!!! AAACTCTTTTTTTGAATGAA+GGG - chr7_4:11641388-11641407 None:intergenic 20.0%
!!! TAAACTCTTTTTTTGAATGA+AGG - chr7_4:11641389-11641408 None:intergenic 20.0%
!!! ACCAATACTAAATCAATTTT+AGG + chr7_4:11641602-11641621 Msa1140250:intron 20.0%
!!! CAAGTAAGCTAATTATTTTT+TGG + chr7_4:11641839-11641858 Msa1140250:intron 20.0%
!! AACTAACGATAAATCTTATT+TGG + chr7_4:11641958-11641977 Msa1140250:intron 20.0%
!!! TAAATCTTATTTGGAACATA+TGG + chr7_4:11641967-11641986 Msa1140250:intron 20.0%
!! TACCAAGTTTAAATATAAAC+TGG + chr7_4:11642995-11643014 Msa1140250:three_prime_UTR 20.0%
!! CAAAATTGACAGAAATATTA+TGG - chr7_4:11643103-11643122 None:intergenic 20.0%
!! GGATTTATAAGTGTATTATT+TGG + chr7_4:11643142-11643161 Msa1140250:three_prime_UTR 20.0%
! AGAAAAAGTTTAAGCGAATT+GGG - chr7_4:11639999-11640018 None:intergenic 25.0%
! GAGAAAATCAAATCTAAAAG+TGG + chr7_4:11640100-11640119 Msa1140250:five_prime_UTR 25.0%
! GAGTTTGATGCTTATAATTA+TGG + chr7_4:11640206-11640225 Msa1140250:five_prime_UTR 25.0%
!!! CCAATTTTTTTTGGGAAATT+AGG - chr7_4:11640556-11640575 None:intergenic 25.0%
! CCTAATTTCCCAAAAAAAAT+TGG + chr7_4:11640553-11640572 Msa1140250:intron 25.0%
!!! GGTTTACACCAATTTTTTTT+GGG - chr7_4:11640564-11640583 None:intergenic 25.0%
!!! TAATTTAGAATTTGGTAACG+AGG + chr7_4:11640602-11640621 Msa1140250:intron 25.0%
! TTTCGATCATGATTCAAATT+TGG + chr7_4:11640765-11640784 Msa1140250:intron 25.0%
! GTTTCTCTCCAAAAAAATTA+GGG + chr7_4:11640971-11640990 Msa1140250:intron 25.0%
! TATAATGTCATGTAGATCAA+TGG - chr7_4:11641131-11641150 None:intergenic 25.0%
!!! AAACAAACTCTTGCTTTTTA+AGG - chr7_4:11641260-11641279 None:intergenic 25.0%
! TCTAATAATATCGACATTAC+TGG - chr7_4:11641299-11641318 None:intergenic 25.0%
! GATTTGAACTAAAAGATTCA+CGG + chr7_4:11641334-11641353 Msa1140250:intron 25.0%
! TTCCAAAGTTCTTAATAACT+AGG - chr7_4:11641550-11641569 None:intergenic 25.0%
!! GCCTAAAATTGATTTAGTAT+TGG - chr7_4:11641606-11641625 None:intergenic 25.0%
! AAACAGTACTATCATATATG+TGG - chr7_4:11641671-11641690 None:intergenic 25.0%
! TAGCTAATATATACTAGTAC+AGG + chr7_4:11641702-11641721 Msa1140250:intron 25.0%
!! CAACTTATATTTTGCTTCTA+TGG + chr7_4:11642067-11642086 Msa1140250:intron 25.0%
! ACTCATTGAGTATATAGATT+AGG - chr7_4:11642151-11642170 None:intergenic 25.0%
! AAAGATGAGATGCATAATAA+GGG - chr7_4:11642807-11642826 None:intergenic 25.0%
! AAAAGATGAGATGCATAATA+AGG - chr7_4:11642808-11642827 None:intergenic 25.0%
! GTTGTATAATCAAGATTGAA+CGG + chr7_4:11642929-11642948 Msa1140250:three_prime_UTR 25.0%
! GACCAGTTTATATTTAAACT+TGG - chr7_4:11643000-11643019 None:intergenic 25.0%
!!! ATGTAAGAAAAGAGAGTATT+TGG - chr7_4:11643196-11643215 None:intergenic 25.0%
GAGAAAAAGTTTAAGCGAAT+TGG - chr7_4:11640000-11640019 None:intergenic 30.0%
TTGACATGAATATGATCTTG+AGG - chr7_4:11640063-11640082 None:intergenic 30.0%
! GTGTGGGTTATTATTATGAT+TGG - chr7_4:11640324-11640343 None:intergenic 30.0%
TCATAATAATAACCCACACA+TGG + chr7_4:11640325-11640344 Msa1140250:CDS 30.0%
!!! TTCCACTTTTTCTCCAAAAA+TGG - chr7_4:11640521-11640540 None:intergenic 30.0%
!!! GGGTTTACACCAATTTTTTT+TGG - chr7_4:11640565-11640584 None:intergenic 30.0%
GGTTTCTCTCCAAAAAAATT+AGG + chr7_4:11640970-11640989 Msa1140250:intron 30.0%
!!! CTCATACACCCTAATTTTTT+TGG - chr7_4:11640982-11641001 None:intergenic 30.0%
CAAAAAAATTAGGGTGTATG+AGG + chr7_4:11640980-11640999 Msa1140250:intron 30.0%
ATGAAAATGTGCTTATGTTC+TGG + chr7_4:11641097-11641116 Msa1140250:intron 30.0%
!!! AACTCTTGCTTTTTAAGGAT+AGG - chr7_4:11641255-11641274 None:intergenic 30.0%
! AAAGCAAGAGTTTGTTTGTA+AGG + chr7_4:11641263-11641282 Msa1140250:intron 30.0%
!! AATATCGACATTACTGGTTT+AGG - chr7_4:11641293-11641312 None:intergenic 30.0%
CTAGGCATAACTAAATATCT+TGG - chr7_4:11641496-11641515 None:intergenic 30.0%
TGCCTAGTTATTAAGAACTT+TGG + chr7_4:11641545-11641564 Msa1140250:intron 30.0%
!! GATTTAGTATTGGTGTTGAA+AGG - chr7_4:11641596-11641615 None:intergenic 30.0%
!! TCAATGAGTATTGCTATTTC+CGG + chr7_4:11642162-11642181 Msa1140250:intron 30.0%
TTCGTAATAAAATCTTTCGC+CGG - chr7_4:11642184-11642203 None:intergenic 30.0%
! GCGAAAGATTTTATTACGAA+GGG + chr7_4:11642184-11642203 Msa1140250:intron 30.0%
TGAAATATATTGTTACGGTC+AGG + chr7_4:11642286-11642305 Msa1140250:intron 30.0%
GAAATATATTGTTACGGTCA+GGG + chr7_4:11642287-11642306 Msa1140250:intron 30.0%
! TCGAGTAATCACTATTGATT+CGG + chr7_4:11642316-11642335 Msa1140250:intron 30.0%
AGATCATATGCATGCATATA+TGG - chr7_4:11642376-11642395 None:intergenic 30.0%
!!! AAACTCTAGCTGCTTTTTTT+GGG - chr7_4:11642549-11642568 None:intergenic 30.0%
AATAGTGCAATTCAACAAAG+TGG + chr7_4:11642697-11642716 Msa1140250:CDS 30.0%
! CTTTTCAATCAACAACATGA+AGG + chr7_4:11642823-11642842 Msa1140250:CDS 30.0%
ATATCTCAACTGCATGAATA+CGG - chr7_4:11642904-11642923 None:intergenic 30.0%
TGACAGAAATATTATGGATG+TGG - chr7_4:11643097-11643116 None:intergenic 30.0%
CCATATATACTTCATTGGAA+TGG - chr7_4:11643219-11643238 None:intergenic 30.0%
CCATTCCAATGAAGTATATA+TGG + chr7_4:11643216-11643235 Msa1140250:three_prime_UTR 30.0%
AGTCACCATATATACTTCAT+TGG - chr7_4:11643224-11643243 None:intergenic 30.0%
ATGAAGTATATATGGTGACT+AGG + chr7_4:11643224-11643243 Msa1140250:three_prime_UTR 30.0%
TGAAGTATATATGGTGACTA+GGG + chr7_4:11643225-11643244 Msa1140250:three_prime_UTR 30.0%
AGACCTAGCTAGTATAAGTA+AGG + chr7_4:11640028-11640047 Msa1140250:five_prime_UTR 35.0%
GACCTAGCTAGTATAAGTAA+GGG + chr7_4:11640029-11640048 Msa1140250:five_prime_UTR 35.0%
ATCTAAAAGTGGATCCAAGA+AGG + chr7_4:11640111-11640130 Msa1140250:five_prime_UTR 35.0%
TCTGATGTTTGTGAAGATAG+TGG - chr7_4:11640149-11640168 None:intergenic 35.0%
ACTATCTTCACAAACATCAG+AGG + chr7_4:11640148-11640167 Msa1140250:five_prime_UTR 35.0%
ACAATCAACCTCAACAACTA+TGG + chr7_4:11640349-11640368 Msa1140250:CDS 35.0%
TTCATTGACCATAGTTGTTG+AGG - chr7_4:11640360-11640379 None:intergenic 35.0%
AGAAACAAACCTTGATCTAG+AGG - chr7_4:11640404-11640423 None:intergenic 35.0%
!!! TTTTTGGAGCTGTCCATTTT+TGG + chr7_4:11640505-11640524 Msa1140250:intron 35.0%
!! GTCCATTTTTGGAGAAAAAG+TGG + chr7_4:11640516-11640535 Msa1140250:intron 35.0%
GTCATGTAGATCAATGGTTA+TGG - chr7_4:11641125-11641144 None:intergenic 35.0%
TGACTTTGACTATCCAGAAA+GGG - chr7_4:11641778-11641797 None:intergenic 35.0%
ATGACTTTGACTATCCAGAA+AGG - chr7_4:11641779-11641798 None:intergenic 35.0%
ACTGAAATGTACACCTTGAA+GGG + chr7_4:11641925-11641944 Msa1140250:intron 35.0%
! GGCGAAAGATTTTATTACGA+AGG + chr7_4:11642183-11642202 Msa1140250:intron 35.0%
AGTGGAAAACATGAGTGAAA+TGG + chr7_4:11642246-11642265 Msa1140250:intron 35.0%
AAAAAGAAACCGCACTATAG+AGG + chr7_4:11642478-11642497 Msa1140250:CDS 35.0%
!!! CAAACTCTAGCTGCTTTTTT+TGG - chr7_4:11642550-11642569 None:intergenic 35.0%
CAAAAAAAGCAGCTAGAGTT+TGG + chr7_4:11642548-11642567 Msa1140250:CDS 35.0%
AAAGCTGCACTCAAATTCAA+AGG + chr7_4:11642616-11642635 Msa1140250:CDS 35.0%
TGCATTGAACAACTCTTTCA+GGG - chr7_4:11642663-11642682 None:intergenic 35.0%
TTGCATTGAACAACTCTTTC+AGG - chr7_4:11642664-11642683 None:intergenic 35.0%
GAGCATACTGAAACAAGTTT+GGG - chr7_4:11642756-11642775 None:intergenic 35.0%
TGAGCATACTGAAACAAGTT+TGG - chr7_4:11642757-11642776 None:intergenic 35.0%
AGGAAATCACTAGATTCTAC+TGG - chr7_4:11642867-11642886 None:intergenic 35.0%
TATCTCAACTGCATGAATAC+GGG - chr7_4:11642903-11642922 None:intergenic 35.0%
!! TGTTCTAGAAACTAGAGTCA+AGG + chr7_4:11643121-11643140 Msa1140250:three_prime_UTR 35.0%
GAAGTATATATGGTGACTAG+GGG + chr7_4:11643226-11643245 Msa1140250:three_prime_UTR 35.0%
AAGTATATATGGTGACTAGG+GGG + chr7_4:11643227-11643246 Msa1140250:three_prime_UTR 35.0%
TGCCCTTACTTATACTAGCT+AGG - chr7_4:11640034-11640053 None:intergenic 40.0%
ATCAGAGGCTAAAGAGAAAG+AGG + chr7_4:11640163-11640182 Msa1140250:five_prime_UTR 40.0%
! GAGAAAGAGGAGTATGCATT+AGG + chr7_4:11640176-11640195 Msa1140250:five_prime_UTR 40.0%
ATGGTAGACAAATCAGTGTC+TGG - chr7_4:11640266-11640285 None:intergenic 40.0%
!! AGACACTGATTTGTCTACCA+TGG + chr7_4:11640265-11640284 Msa1140250:exon 40.0%
AACAAACCTTGATCTAGAGG+AGG - chr7_4:11640401-11640420 None:intergenic 40.0%
GGTGATAATTTGGGTGTATG+AGG + chr7_4:11640949-11640968 Msa1140250:intron 40.0%
! CGGTTGAGTATTAGTTTCAG+TGG + chr7_4:11641354-11641373 Msa1140250:intron 40.0%
TATGTTGCTCAATCCCTTTC+TGG + chr7_4:11641762-11641781 Msa1140250:intron 40.0%
GGTGTACATTTCAGTGTCAT+CGG - chr7_4:11641920-11641939 None:intergenic 40.0%
CACTGAAATGTACACCTTGA+AGG + chr7_4:11641924-11641943 Msa1140250:intron 40.0%
CTGAAATGTACACCTTGAAG+GGG + chr7_4:11641926-11641945 Msa1140250:intron 40.0%
!! GTTTGATTTGTTCCCCTTCA+AGG - chr7_4:11641941-11641960 None:intergenic 40.0%
CCACTAAGCATGAGATCTAA+CGG - chr7_4:11642231-11642250 None:intergenic 40.0%
AACAACGCATGCACAAAACA+AGG - chr7_4:11642445-11642464 None:intergenic 40.0%
GCATGCGTTGTTAATGAAAG+AGG + chr7_4:11642453-11642472 Msa1140250:intron 40.0%
AAAGCAGCTAGAGTTTGGTT+AGG + chr7_4:11642553-11642572 Msa1140250:CDS 40.0%
ATACGGGATTTCATGATTGC+AGG - chr7_4:11642887-11642906 None:intergenic 40.0%
TCATGCAGTTGAGATATCAG+TGG + chr7_4:11642907-11642926 Msa1140250:three_prime_UTR 40.0%
AGTATATATGGTGACTAGGG+GGG + chr7_4:11643228-11643247 Msa1140250:three_prime_UTR 40.0%
AAAGTGGATCCAAGAAGGCA+TGG + chr7_4:11640116-11640135 Msa1140250:five_prime_UTR 45.0%
TTGAGAGAGAGCAGAAACCA+TGG - chr7_4:11640285-11640304 None:intergenic 45.0%
TCTGCTCTCTCTCAAGTCAT+TGG + chr7_4:11640290-11640309 Msa1140250:CDS 45.0%
! AGGTTGATTGTGCCATGTGT+GGG - chr7_4:11640340-11640359 None:intergenic 45.0%
CCGTTAGATCTCATGCTTAG+TGG + chr7_4:11642228-11642247 Msa1140250:intron 45.0%
TGTCTCACTCCTCTATAGTG+CGG - chr7_4:11642490-11642509 None:intergenic 45.0%
ACAGAGACCATGGGGAAAAT+GGG + chr7_4:11642507-11642526 Msa1140250:CDS 45.0%
ATCACTAGATTCTACTGGCC+CGG - chr7_4:11642862-11642881 None:intergenic 45.0%
GGTCGATCTTGATCATCGAA+TGG + chr7_4:11643016-11643035 Msa1140250:three_prime_UTR 45.0%
ATGCCGCGACTTGTAAATGT+CGG + chr7_4:11643044-11643063 Msa1140250:three_prime_UTR 45.0%
TTCCCGACATTTACAAGTCG+CGG - chr7_4:11643050-11643069 None:intergenic 45.0%
!!! TAGTTTTTTTTTTTTTTTTA+GGG + chr7_4:11641513-11641532 Msa1140250:intron 5.0%
GGCAACTTTCCATGCCTTCT+TGG - chr7_4:11640128-11640147 None:intergenic 50.0%
! GAGGTTGATTGTGCCATGTG+TGG - chr7_4:11640341-11640360 None:intergenic 50.0%
TGATCTAGAGGAGGTTGAGG+TGG - chr7_4:11640392-11640411 None:intergenic 50.0%
CCTTGATCTAGAGGAGGTTG+AGG - chr7_4:11640395-11640414 None:intergenic 50.0%
CCTCAACCTCCTCTAGATCA+AGG + chr7_4:11640392-11640411 Msa1140250:CDS 50.0%
AGGAGTGAGACAGAGACCAT+GGG + chr7_4:11642498-11642517 Msa1140250:CDS 50.0%
GACAGAGACCATGGGGAAAA+TGG + chr7_4:11642506-11642525 Msa1140250:CDS 50.0%
TGAAGGAGATCGTCAACCAC+CGG + chr7_4:11642840-11642859 Msa1140250:CDS 50.0%
TGCCGCGACTTGTAAATGTC+GGG + chr7_4:11643045-11643064 Msa1140250:three_prime_UTR 50.0%
AAATGTCGGGAATCCCTGCA+TGG + chr7_4:11643058-11643077 Msa1140250:three_prime_UTR 50.0%
! AATCCCTGCATGGTAGTGCA+TGG + chr7_4:11643068-11643087 Msa1140250:three_prime_UTR 50.0%
CTACCATGCACTACCATGCA+GGG - chr7_4:11643074-11643093 None:intergenic 50.0%
GAGGAGTGAGACAGAGACCA+TGG + chr7_4:11642497-11642516 Msa1140250:CDS 55.0%
GGAGTGAGACAGAGACCATG+GGG + chr7_4:11642499-11642518 Msa1140250:CDS 55.0%
! TCAGCTGCCCATTTTCCCCA+TGG - chr7_4:11642517-11642536 None:intergenic 55.0%
GAAGGAGATCGTCAACCACC+GGG + chr7_4:11642841-11642860 Msa1140250:CDS 55.0%
ACTAGATTCTACTGGCCCGG+TGG - chr7_4:11642859-11642878 None:intergenic 55.0%
GCTACCATGCACTACCATGC+AGG - chr7_4:11643075-11643094 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 11639968 11643282 11639968 ID=Msa1140250;Name=Msa1140250
chr7_4 mRNA 11639968 11643282 11639968 ID=Msa1140250-mRNA-1;Parent=Msa1140250;Name=Msa1140250-mRNA-1;_AED=0.01;_eAED=0.01;_QI=316|1|1|1|1|1|2|412|175
chr7_4 exon 11639968 11640413 11639968 ID=Msa1140250-mRNA-1:exon:2753;Parent=Msa1140250-mRNA-1
chr7_4 exon 11642473 11643282 11642473 ID=Msa1140250-mRNA-1:exon:2754;Parent=Msa1140250-mRNA-1
chr7_4 five_prime_UTR 11639968 11640283 11639968 ID=Msa1140250-mRNA-1:five_prime_utr;Parent=Msa1140250-mRNA-1
chr7_4 CDS 11640284 11640413 11640284 ID=Msa1140250-mRNA-1:cds;Parent=Msa1140250-mRNA-1
chr7_4 CDS 11642473 11642870 11642473 ID=Msa1140250-mRNA-1:cds;Parent=Msa1140250-mRNA-1
chr7_4 three_prime_UTR 11642871 11643282 11642871 ID=Msa1140250-mRNA-1:three_prime_utr;Parent=Msa1140250-mRNA-1
Gene Sequence

>Msa1140250

ATGGTTTCTGCTCTCTCTCAAGTCATTGGAACATCAACCAATCATAATAATAACCCACACATGGCACAATCAACCTCAACAACTATGGTCAATGAAGAATCTCAACCACCTCAACCTCCTCTAGATCAAGAGGTAAAAAAGAAACCGCACTATAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCAGCTGAAATACGTGACCCAAAAAAAGCAGCTAGAGTTTGGTTAGGAACATTTGATACAGCTGAAGATGCAGCTCTTGCATATGACAAAGCTGCACTCAAATTCAAAGGCACAAAAGCTAAGCTTAATTTCCCTGAAAGAGTTGTTCAATGCAACAGTTCTAGTGCTAATAGTGCAATTCAACAAAGTGGTTATGTTTCTAATTCTCATGATCAACAAGTTTTCCCAAACTTGTTTCAGTATGCTCAGATTCTAGAAAGTGATGCTGATCAATTCCCTTATTATGCATCTCATCTTTTCAATCAACAACATGAAGGAGATCGTCAACCACCGGGCCAGTAG
Protein sequence

>Msa1140250

MVSALSQVIGTSTNHNNNPHMAQSTSTTMVNEESQPPQPPLDQEVKKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGTKAKLNFPERVVQCNSSSANSAIQQSGYVSNSHDQQVFPNLFQYAQILESDADQFPYYASHLFNQQHEGDRQPPGQ*