Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097690 | XP_024630645.1 | 94.842 | 349 | 18 | 0 | 1 | 349 | 1 | 349 | 0.0 | 685 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097690 | sp|Q96471|DCAM_IPONI | 69.444 | 360 | 109 | 1 | 1 | 359 | 1 | 360 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097690 | A0A396IAX3 | 94.842 | 349 | 18 | 0 | 1 | 349 | 1 | 349 | 0.0 | 685 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1009980 | Msa1097690 | 0.880235 | 6.487886e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097690 | MtrunA17_Chr4g0020181 | 94.842 | 349 | 18 | 0 | 1 | 349 | 1 | 349 | 0.0 | 685 |
| Msa1097690 | MtrunA17_Chr7g0220841 | 94.269 | 349 | 20 | 0 | 1 | 349 | 1 | 349 | 0.0 | 684 |
| Msa1097690 | MtrunA17_Chr7g0220781 | 94.269 | 349 | 20 | 0 | 1 | 349 | 1 | 349 | 0.0 | 679 |
| Msa1097690 | MtrunA17_Chr4g0021521 | 68.732 | 355 | 108 | 3 | 3 | 356 | 1 | 353 | 1.13e-176 | 494 |
| Msa1097690 | MtrunA17_Chr8g0368661 | 63.248 | 351 | 127 | 2 | 1 | 350 | 1 | 350 | 2.80e-160 | 453 |
| Msa1097690 | MtrunA17_Chr7g0220811 | 95.238 | 189 | 9 | 0 | 1 | 189 | 1 | 189 | 3.54e-128 | 365 |
| Msa1097690 | MtrunA17_Chr7g0220821 | 92.254 | 142 | 11 | 0 | 208 | 349 | 1 | 142 | 1.71e-96 | 283 |
| Msa1097690 | MtrunA17_Chr2g0286961 | 42.647 | 340 | 177 | 8 | 9 | 332 | 5 | 342 | 2.12e-80 | 249 |
| Msa1097690 | MtrunA17_Chr4g0066361 | 40.469 | 341 | 179 | 7 | 9 | 331 | 5 | 339 | 3.60e-78 | 243 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097690 | AT3G02470.4 | 62.943 | 367 | 123 | 6 | 3 | 357 | 1 | 366 | 1.10e-160 | 454 |
| Msa1097690 | AT3G02470.1 | 62.943 | 367 | 123 | 6 | 3 | 357 | 1 | 366 | 1.10e-160 | 454 |
| Msa1097690 | AT3G02470.3 | 62.943 | 367 | 123 | 6 | 3 | 357 | 1 | 366 | 1.10e-160 | 454 |
| Msa1097690 | AT5G15950.2 | 63.260 | 362 | 128 | 4 | 3 | 359 | 1 | 362 | 3.35e-158 | 448 |
| Msa1097690 | AT5G15950.1 | 63.260 | 362 | 128 | 4 | 3 | 359 | 1 | 362 | 3.35e-158 | 448 |
| Msa1097690 | AT3G25570.2 | 64.470 | 349 | 120 | 3 | 3 | 347 | 1 | 349 | 3.42e-156 | 442 |
| Msa1097690 | AT3G25570.1 | 64.470 | 349 | 120 | 3 | 3 | 347 | 1 | 349 | 3.42e-156 | 442 |
| Msa1097690 | AT5G18930.1 | 42.059 | 340 | 180 | 6 | 9 | 332 | 5 | 343 | 5.07e-84 | 259 |
| Msa1097690 | AT3G17717.1 | 49.107 | 112 | 53 | 3 | 182 | 291 | 18 | 127 | 1.41e-29 | 110 |
Find 79 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTCATCAATTTGGTCTT+TGG | 0.217491 | 7_3:+23186766 | None:intergenic |
| AAATTTCCTTTGGAGGTTAA+AGG | 0.271383 | 7_3:-23185978 | Msa1097690:CDS |
| GTTTCAGAATCTCATCAATT+TGG | 0.271425 | 7_3:+23186759 | None:intergenic |
| AAGTCACATATGTCGGATTT+TGG | 0.276673 | 7_3:+23186227 | None:intergenic |
| GCTGTCCTTGACAGCTATTT+TGG | 0.280170 | 7_3:-23186476 | Msa1097690:CDS |
| GCATAGCTGAACCCATCTTC+AGG | 0.344043 | 7_3:+23186134 | None:intergenic |
| AAAACTTGACAAATTTCCTT+TGG | 0.369192 | 7_3:-23185988 | Msa1097690:CDS |
| CATACCTTTGTTCGAAATGA+TGG | 0.395244 | 7_3:-23185897 | Msa1097690:CDS |
| TTCTCTGATCCTGCCGGACT+AGG | 0.400283 | 7_3:-23186803 | Msa1097690:CDS |
| TCGGCAAGCTTAAGAATTGC+AGG | 0.407592 | 7_3:+23186599 | None:intergenic |
| GCTTCACCGGAAGCTGTCTA+TGG | 0.409050 | 7_3:-23186362 | Msa1097690:CDS |
| GGTCTACTCTGAAATGTTGC+TGG | 0.418240 | 7_3:-23185860 | Msa1097690:CDS |
| GACCAGTCATGCACACTTCA+AGG | 0.420563 | 7_3:+23186339 | None:intergenic |
| CTATGCAAGCTTTGAAGCAC+TGG | 0.422653 | 7_3:-23186117 | Msa1097690:CDS |
| GGCCTTGAAGTGTGCATGAC+TGG | 0.429225 | 7_3:-23186341 | Msa1097690:CDS |
| AAATCTCTGAATGAACTTGT+TGG | 0.430429 | 7_3:-23186077 | Msa1097690:CDS |
| TCAAGGCCATAGACAGCTTC+CGG | 0.434065 | 7_3:+23186356 | None:intergenic |
| ATCCATGTCACCCCTGAAGA+TGG | 0.438146 | 7_3:-23186146 | Msa1097690:CDS |
| ACTTTGAATTTGAACCTTGC+GGG | 0.440779 | 7_3:-23186208 | Msa1097690:CDS |
| CAATGCTCGGAGGCCTAGTC+CGG | 0.441585 | 7_3:+23186790 | None:intergenic |
| ACTTGACAAATTTCCTTTGG+AGG | 0.442578 | 7_3:-23185985 | Msa1097690:CDS |
| TGACTAAGAATTCTGCAATC+AGG | 0.461802 | 7_3:-23186259 | Msa1097690:CDS |
| ATGCTGATAAGTCACAGATT+TGG | 0.463717 | 7_3:-23186415 | Msa1097690:CDS |
| TTCAGGGGTGACATGGATAG+TGG | 0.468582 | 7_3:+23186151 | None:intergenic |
| TTTGGTCTTTGGACAATGCT+CGG | 0.490726 | 7_3:+23186777 | None:intergenic |
| CTCTGAATGAACTTGTTGGA+AGG | 0.494644 | 7_3:-23186073 | Msa1097690:CDS |
| TGAGAACGAGGAGGAAGTGA+AGG | 0.496603 | 7_3:-23185829 | Msa1097690:CDS |
| TCTGAATGAACTTGTTGGAA+GGG | 0.497768 | 7_3:-23186072 | Msa1097690:CDS |
| TACTCAATGAACGGAATTGA+GGG | 0.499113 | 7_3:-23186185 | Msa1097690:CDS |
| CATAGCTGAACCCATCTTCA+GGG | 0.502056 | 7_3:+23186135 | None:intergenic |
| GCTCGGAGGCCTAGTCCGGC+AGG | 0.509324 | 7_3:+23186794 | None:intergenic |
| TCCATGTCACCCCTGAAGAT+GGG | 0.515044 | 7_3:-23186145 | Msa1097690:CDS |
| TCCACAATAGTGCATTCTGC+TGG | 0.520646 | 7_3:+23186737 | None:intergenic |
| TGGTAGCCAAGCTTATATGA+TGG | 0.524204 | 7_3:-23186441 | Msa1097690:CDS |
| GTACTCAATGAACGGAATTG+AGG | 0.525785 | 7_3:-23186186 | Msa1097690:CDS |
| AATGAAGTGCTTGGAGAAGA+TGG | 0.529682 | 7_3:-23185933 | Msa1097690:CDS |
| GACTGGTCTAGATAAAGAAA+AGG | 0.529734 | 7_3:-23186324 | Msa1097690:CDS |
| ACCCATCTTCAGGGGTGACA+TGG | 0.530956 | 7_3:+23186144 | None:intergenic |
| TGTGGGAATGATTGAGCACC+TGG | 0.531846 | 7_3:+23186521 | None:intergenic |
| AAATTCAAAGTCACATATGT+CGG | 0.533465 | 7_3:+23186220 | None:intergenic |
| TTGTATCCTTTAACCTCCAA+AGG | 0.534196 | 7_3:+23185972 | None:intergenic |
| AAGCAATTTCGTAGTCCCAC+AGG | 0.538583 | 7_3:+23186631 | None:intergenic |
| GTCAAGGACAGCAACTTCCT+CGG | 0.543159 | 7_3:+23186487 | None:intergenic |
| TGCTAAGCTAGAAGCTTCAC+CGG | 0.553986 | 7_3:-23186375 | Msa1097690:CDS |
| GTTTGCCAAAATAGCTGTCA+AGG | 0.560516 | 7_3:+23186471 | None:intergenic |
| CATCACCCATCATATAAGCT+TGG | 0.565152 | 7_3:+23186435 | None:intergenic |
| CATCATTTCGAACAAAGGTA+TGG | 0.565625 | 7_3:+23185898 | None:intergenic |
| GAGAGGATCAATGAAGTGCT+TGG | 0.566102 | 7_3:-23185942 | Msa1097690:CDS |
| AGCTTATCATCAAAACCTGT+GGG | 0.576476 | 7_3:-23186646 | Msa1097690:CDS |
| CAACATTTCAGAGTAGACCT+TGG | 0.577948 | 7_3:+23185864 | None:intergenic |
| GGTAGCCAAGCTTATATGAT+GGG | 0.582473 | 7_3:-23186440 | Msa1097690:CDS |
| GCAATTCTTAAGCTTGCCGA+TGG | 0.593187 | 7_3:-23186596 | Msa1097690:CDS |
| ATGATGGCTGCTCATCTCCA+AGG | 0.593841 | 7_3:-23185881 | Msa1097690:CDS |
| GCCATGACAAACTCAGCTAT+CGG | 0.597878 | 7_3:-23186878 | Msa1097690:CDS |
| TCCTCGGAAAAGCTACGATG+TGG | 0.600474 | 7_3:+23186503 | None:intergenic |
| ACCAGCAGAATGCACTATTG+TGG | 0.601679 | 7_3:-23186738 | Msa1097690:CDS |
| ACCGATAGCTGAGTTTGTCA+TGG | 0.606711 | 7_3:+23186877 | None:intergenic |
| TTTAGCATGTTTCTATCCAG+CGG | 0.611804 | 7_3:-23186048 | Msa1097690:CDS |
| AAGCTTATCATCAAAACCTG+TGG | 0.612735 | 7_3:-23186647 | Msa1097690:CDS |
| CCGTTCATTGAGTACCCGCA+AGG | 0.620321 | 7_3:+23186194 | None:intergenic |
| TATGCAAGCTTTGAAGCACT+GGG | 0.621752 | 7_3:-23186116 | Msa1097690:CDS |
| TCTAGATAAAGAAAAGGCAT+CGG | 0.625471 | 7_3:-23186318 | Msa1097690:CDS |
| AAGGATACAACTGTGGTGAG+AGG | 0.627321 | 7_3:-23185959 | Msa1097690:CDS |
| GCAGCCATCATTTCGAACAA+AGG | 0.633963 | 7_3:+23185893 | None:intergenic |
| TAAGAATTCTGCAATCAGGA+AGG | 0.635708 | 7_3:-23186255 | Msa1097690:CDS |
| CCTTGCGGGTACTCAATGAA+CGG | 0.636080 | 7_3:-23186194 | Msa1097690:CDS |
| CCTCGGAAAAGCTACGATGT+GGG | 0.640742 | 7_3:+23186504 | None:intergenic |
| CGGCAAGCTTAAGAATTGCA+GGG | 0.643796 | 7_3:+23186600 | None:intergenic |
| AATGCAACAGAAAACTCCGC+TGG | 0.645173 | 7_3:+23186032 | None:intergenic |
| CTGGAGTGAGGATGAGAACG+AGG | 0.648538 | 7_3:-23185841 | Msa1097690:CDS |
| TCTGAAATGTTGCTGGAGTG+AGG | 0.649297 | 7_3:-23185853 | Msa1097690:CDS |
| GACTTTGAATTTGAACCTTG+CGG | 0.658489 | 7_3:-23186209 | Msa1097690:CDS |
| GGTCTTTGGACAATGCTCGG+AGG | 0.663736 | 7_3:+23186780 | None:intergenic |
| GCATTGCACATTGATGCGAA+TGG | 0.665215 | 7_3:-23186014 | Msa1097690:CDS |
| GAGGTTAAAGGATACAACTG+TGG | 0.695244 | 7_3:-23185966 | Msa1097690:CDS |
| ATAGCTGAACCCATCTTCAG+GGG | 0.696514 | 7_3:+23186136 | None:intergenic |
| GAGTGAGGATGAGAACGAGG+AGG | 0.703166 | 7_3:-23185838 | Msa1097690:CDS |
| GTGGGAATGATTGAGCACCT+GGG | 0.718165 | 7_3:+23186522 | None:intergenic |
| AAATCAGTGAGATACACTCG+CGG | 0.751449 | 7_3:-23186557 | Msa1097690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAGATGACTTTTTTTGAAAA+TGG | - | chr7_3:23185872-23185891 | Msa1097690:CDS | 25.0% |
| ! | AAATTCAAAGTCACATATGT+CGG | + | chr7_3:23186485-23186504 | None:intergenic | 25.0% |
| ! | AAAACTTGACAAATTTCCTT+TGG | - | chr7_3:23186714-23186733 | Msa1097690:CDS | 25.0% |
| !!! | GAGATGACTTTTTTTGAAAA+TGG | - | chr7_3:23185872-23185891 | Msa1097690:CDS | 25.0% |
| ! | AAATTCAAAGTCACATATGT+CGG | + | chr7_3:23186485-23186504 | None:intergenic | 25.0% |
| ! | AAAACTTGACAAATTTCCTT+TGG | - | chr7_3:23186714-23186733 | Msa1097690:CDS | 25.0% |
| ! | AATCTCATCAATTTGGTCTT+TGG | + | chr7_3:23185939-23185958 | None:intergenic | 30.0% |
| GTTTCAGAATCTCATCAATT+TGG | + | chr7_3:23185946-23185965 | None:intergenic | 30.0% | |
| ! | TCTAGATAAAGAAAAGGCAT+CGG | - | chr7_3:23186384-23186403 | Msa1097690:CDS | 30.0% |
| AAATCTCTGAATGAACTTGT+TGG | - | chr7_3:23186625-23186644 | Msa1097690:CDS | 30.0% | |
| ! | AAATTTCCTTTGGAGGTTAA+AGG | - | chr7_3:23186724-23186743 | Msa1097690:CDS | 30.0% |
| ! | AATCTCATCAATTTGGTCTT+TGG | + | chr7_3:23185939-23185958 | None:intergenic | 30.0% |
| GTTTCAGAATCTCATCAATT+TGG | + | chr7_3:23185946-23185965 | None:intergenic | 30.0% | |
| ! | TCTAGATAAAGAAAAGGCAT+CGG | - | chr7_3:23186384-23186403 | Msa1097690:CDS | 30.0% |
| AAATCTCTGAATGAACTTGT+TGG | - | chr7_3:23186625-23186644 | Msa1097690:CDS | 30.0% | |
| ! | AAATTTCCTTTGGAGGTTAA+AGG | - | chr7_3:23186724-23186743 | Msa1097690:CDS | 30.0% |
| !!! | GTTTTGAAGGCTATGAAAAG+AGG | - | chr7_3:23185846-23185865 | Msa1097690:CDS | 35.0% |
| AAGCTTATCATCAAAACCTG+TGG | - | chr7_3:23186055-23186074 | Msa1097690:CDS | 35.0% | |
| AGCTTATCATCAAAACCTGT+GGG | - | chr7_3:23186056-23186075 | Msa1097690:CDS | 35.0% | |
| !!! | CACAGCTATTTTAAGACCAT+CGG | + | chr7_3:23186125-23186144 | None:intergenic | 35.0% |
| !!! | TATTTTGGCAAACTAGGTTC+TGG | - | chr7_3:23186241-23186260 | Msa1097690:CDS | 35.0% |
| ATGCTGATAAGTCACAGATT+TGG | - | chr7_3:23186287-23186306 | Msa1097690:CDS | 35.0% | |
| !! | GACTGGTCTAGATAAAGAAA+AGG | - | chr7_3:23186378-23186397 | Msa1097690:CDS | 35.0% |
| TGACTAAGAATTCTGCAATC+AGG | - | chr7_3:23186443-23186462 | Msa1097690:CDS | 35.0% | |
| TAAGAATTCTGCAATCAGGA+AGG | - | chr7_3:23186447-23186466 | Msa1097690:CDS | 35.0% | |
| ! | AAGTCACATATGTCGGATTT+TGG | + | chr7_3:23186478-23186497 | None:intergenic | 35.0% |
| GACTTTGAATTTGAACCTTG+CGG | - | chr7_3:23186493-23186512 | Msa1097690:CDS | 35.0% | |
| ACTTTGAATTTGAACCTTGC+GGG | - | chr7_3:23186494-23186513 | Msa1097690:CDS | 35.0% | |
| TACTCAATGAACGGAATTGA+GGG | - | chr7_3:23186517-23186536 | Msa1097690:CDS | 35.0% | |
| !! | TCTGAATGAACTTGTTGGAA+GGG | - | chr7_3:23186630-23186649 | Msa1097690:CDS | 35.0% |
| ! | TTTAGCATGTTTCTATCCAG+CGG | - | chr7_3:23186654-23186673 | Msa1097690:CDS | 35.0% |
| ACTTGACAAATTTCCTTTGG+AGG | - | chr7_3:23186717-23186736 | Msa1097690:CDS | 35.0% | |
| TTGTATCCTTTAACCTCCAA+AGG | + | chr7_3:23186733-23186752 | None:intergenic | 35.0% | |
| CATCATTTCGAACAAAGGTA+TGG | + | chr7_3:23186807-23186826 | None:intergenic | 35.0% | |
| CATACCTTTGTTCGAAATGA+TGG | - | chr7_3:23186805-23186824 | Msa1097690:CDS | 35.0% | |
| !!! | GTTTTGAAGGCTATGAAAAG+AGG | - | chr7_3:23185846-23185865 | Msa1097690:CDS | 35.0% |
| AAGCTTATCATCAAAACCTG+TGG | - | chr7_3:23186055-23186074 | Msa1097690:CDS | 35.0% | |
| AGCTTATCATCAAAACCTGT+GGG | - | chr7_3:23186056-23186075 | Msa1097690:CDS | 35.0% | |
| !!! | CACAGCTATTTTAAGACCAT+CGG | + | chr7_3:23186125-23186144 | None:intergenic | 35.0% |
| !!! | TATTTTGGCAAACTAGGTTC+TGG | - | chr7_3:23186241-23186260 | Msa1097690:CDS | 35.0% |
| ATGCTGATAAGTCACAGATT+TGG | - | chr7_3:23186287-23186306 | Msa1097690:CDS | 35.0% | |
| !! | GACTGGTCTAGATAAAGAAA+AGG | - | chr7_3:23186378-23186397 | Msa1097690:CDS | 35.0% |
| TGACTAAGAATTCTGCAATC+AGG | - | chr7_3:23186443-23186462 | Msa1097690:CDS | 35.0% | |
| TAAGAATTCTGCAATCAGGA+AGG | - | chr7_3:23186447-23186466 | Msa1097690:CDS | 35.0% | |
| ! | AAGTCACATATGTCGGATTT+TGG | + | chr7_3:23186478-23186497 | None:intergenic | 35.0% |
| GACTTTGAATTTGAACCTTG+CGG | - | chr7_3:23186493-23186512 | Msa1097690:CDS | 35.0% | |
| ACTTTGAATTTGAACCTTGC+GGG | - | chr7_3:23186494-23186513 | Msa1097690:CDS | 35.0% | |
| TACTCAATGAACGGAATTGA+GGG | - | chr7_3:23186517-23186536 | Msa1097690:CDS | 35.0% | |
| !! | TCTGAATGAACTTGTTGGAA+GGG | - | chr7_3:23186630-23186649 | Msa1097690:CDS | 35.0% |
| ! | TTTAGCATGTTTCTATCCAG+CGG | - | chr7_3:23186654-23186673 | Msa1097690:CDS | 35.0% |
| ACTTGACAAATTTCCTTTGG+AGG | - | chr7_3:23186717-23186736 | Msa1097690:CDS | 35.0% | |
| TTGTATCCTTTAACCTCCAA+AGG | + | chr7_3:23186733-23186752 | None:intergenic | 35.0% | |
| CATCATTTCGAACAAAGGTA+TGG | + | chr7_3:23186807-23186826 | None:intergenic | 35.0% | |
| CATACCTTTGTTCGAAATGA+TGG | - | chr7_3:23186805-23186824 | Msa1097690:CDS | 35.0% | |
| !!! | AACTCAGCTATCGGTTTTGA+AGG | - | chr7_3:23185833-23185852 | Msa1097690:CDS | 40.0% |
| ! | TTTGGTCTTTGGACAATGCT+CGG | + | chr7_3:23185928-23185947 | None:intergenic | 40.0% |
| AAATCAGTGAGATACACTCG+CGG | - | chr7_3:23186145-23186164 | Msa1097690:CDS | 40.0% | |
| GTTTGCCAAAATAGCTGTCA+AGG | + | chr7_3:23186234-23186253 | None:intergenic | 40.0% | |
| !!! | GACAGCTATTTTGGCAAACT+AGG | - | chr7_3:23186235-23186254 | Msa1097690:CDS | 40.0% |
| TGGTAGCCAAGCTTATATGA+TGG | - | chr7_3:23186261-23186280 | Msa1097690:CDS | 40.0% | |
| GGTAGCCAAGCTTATATGAT+GGG | - | chr7_3:23186262-23186281 | Msa1097690:CDS | 40.0% | |
| CATCACCCATCATATAAGCT+TGG | + | chr7_3:23186270-23186289 | None:intergenic | 40.0% | |
| !! | CACATATGTCGGATTTTGGT+AGG | + | chr7_3:23186474-23186493 | None:intergenic | 40.0% |
| GTACTCAATGAACGGAATTG+AGG | - | chr7_3:23186516-23186535 | Msa1097690:CDS | 40.0% | |
| !! | TATGCAAGCTTTGAAGCACT+GGG | - | chr7_3:23186586-23186605 | Msa1097690:CDS | 40.0% |
| !! | CTCTGAATGAACTTGTTGGA+AGG | - | chr7_3:23186629-23186648 | Msa1097690:CDS | 40.0% |
| GAGGTTAAAGGATACAACTG+TGG | - | chr7_3:23186736-23186755 | Msa1097690:CDS | 40.0% | |
| ! | AATGAAGTGCTTGGAGAAGA+TGG | - | chr7_3:23186769-23186788 | Msa1097690:CDS | 40.0% |
| CAACATTTCAGAGTAGACCT+TGG | + | chr7_3:23186841-23186860 | None:intergenic | 40.0% | |
| !!! | AACTCAGCTATCGGTTTTGA+AGG | - | chr7_3:23185833-23185852 | Msa1097690:CDS | 40.0% |
| ! | TTTGGTCTTTGGACAATGCT+CGG | + | chr7_3:23185928-23185947 | None:intergenic | 40.0% |
| AAATCAGTGAGATACACTCG+CGG | - | chr7_3:23186145-23186164 | Msa1097690:CDS | 40.0% | |
| GTTTGCCAAAATAGCTGTCA+AGG | + | chr7_3:23186234-23186253 | None:intergenic | 40.0% | |
| !!! | GACAGCTATTTTGGCAAACT+AGG | - | chr7_3:23186235-23186254 | Msa1097690:CDS | 40.0% |
| TGGTAGCCAAGCTTATATGA+TGG | - | chr7_3:23186261-23186280 | Msa1097690:CDS | 40.0% | |
| GGTAGCCAAGCTTATATGAT+GGG | - | chr7_3:23186262-23186281 | Msa1097690:CDS | 40.0% | |
| CATCACCCATCATATAAGCT+TGG | + | chr7_3:23186270-23186289 | None:intergenic | 40.0% | |
| !! | CACATATGTCGGATTTTGGT+AGG | + | chr7_3:23186474-23186493 | None:intergenic | 40.0% |
| GTACTCAATGAACGGAATTG+AGG | - | chr7_3:23186516-23186535 | Msa1097690:CDS | 40.0% | |
| !! | TATGCAAGCTTTGAAGCACT+GGG | - | chr7_3:23186586-23186605 | Msa1097690:CDS | 40.0% |
| !! | CTCTGAATGAACTTGTTGGA+AGG | - | chr7_3:23186629-23186648 | Msa1097690:CDS | 40.0% |
| GAGGTTAAAGGATACAACTG+TGG | - | chr7_3:23186736-23186755 | Msa1097690:CDS | 40.0% | |
| ! | AATGAAGTGCTTGGAGAAGA+TGG | - | chr7_3:23186769-23186788 | Msa1097690:CDS | 40.0% |
| CAACATTTCAGAGTAGACCT+TGG | + | chr7_3:23186841-23186860 | None:intergenic | 40.0% | |
| GCCATGACAAACTCAGCTAT+CGG | - | chr7_3:23185824-23185843 | Msa1097690:CDS | 45.0% | |
| ACCGATAGCTGAGTTTGTCA+TGG | + | chr7_3:23185828-23185847 | None:intergenic | 45.0% | |
| ACCAGCAGAATGCACTATTG+TGG | - | chr7_3:23185964-23185983 | Msa1097690:CDS | 45.0% | |
| TCCACAATAGTGCATTCTGC+TGG | + | chr7_3:23185968-23185987 | None:intergenic | 45.0% | |
| AAGCAATTTCGTAGTCCCAC+AGG | + | chr7_3:23186074-23186093 | None:intergenic | 45.0% | |
| CGGCAAGCTTAAGAATTGCA+GGG | + | chr7_3:23186105-23186124 | None:intergenic | 45.0% | |
| TCGGCAAGCTTAAGAATTGC+AGG | + | chr7_3:23186106-23186125 | None:intergenic | 45.0% | |
| GCAATTCTTAAGCTTGCCGA+TGG | - | chr7_3:23186106-23186125 | Msa1097690:CDS | 45.0% | |
| ! | GCTGTCCTTGACAGCTATTT+TGG | - | chr7_3:23186226-23186245 | Msa1097690:CDS | 45.0% |
| TGCTAAGCTAGAAGCTTCAC+CGG | - | chr7_3:23186327-23186346 | Msa1097690:CDS | 45.0% | |
| ATAGCTGAACCCATCTTCAG+GGG | + | chr7_3:23186569-23186588 | None:intergenic | 45.0% | |
| CATAGCTGAACCCATCTTCA+GGG | + | chr7_3:23186570-23186589 | None:intergenic | 45.0% | |
| !! | CTATGCAAGCTTTGAAGCAC+TGG | - | chr7_3:23186585-23186604 | Msa1097690:CDS | 45.0% |
| AATGCAACAGAAAACTCCGC+TGG | + | chr7_3:23186673-23186692 | None:intergenic | 45.0% | |
| GCATTGCACATTGATGCGAA+TGG | - | chr7_3:23186688-23186707 | Msa1097690:CDS | 45.0% | |
| AAGGATACAACTGTGGTGAG+AGG | - | chr7_3:23186743-23186762 | Msa1097690:CDS | 45.0% | |
| ! | GAGAGGATCAATGAAGTGCT+TGG | - | chr7_3:23186760-23186779 | Msa1097690:CDS | 45.0% |
| GCAGCCATCATTTCGAACAA+AGG | + | chr7_3:23186812-23186831 | None:intergenic | 45.0% | |
| !! | GGTCTACTCTGAAATGTTGC+TGG | - | chr7_3:23186842-23186861 | Msa1097690:CDS | 45.0% |
| ! | TCTGAAATGTTGCTGGAGTG+AGG | - | chr7_3:23186849-23186868 | Msa1097690:CDS | 45.0% |
| GCCATGACAAACTCAGCTAT+CGG | - | chr7_3:23185824-23185843 | Msa1097690:CDS | 45.0% | |
| ACCGATAGCTGAGTTTGTCA+TGG | + | chr7_3:23185828-23185847 | None:intergenic | 45.0% | |
| ACCAGCAGAATGCACTATTG+TGG | - | chr7_3:23185964-23185983 | Msa1097690:CDS | 45.0% | |
| TCCACAATAGTGCATTCTGC+TGG | + | chr7_3:23185968-23185987 | None:intergenic | 45.0% | |
| AAGCAATTTCGTAGTCCCAC+AGG | + | chr7_3:23186074-23186093 | None:intergenic | 45.0% | |
| CGGCAAGCTTAAGAATTGCA+GGG | + | chr7_3:23186105-23186124 | None:intergenic | 45.0% | |
| TCGGCAAGCTTAAGAATTGC+AGG | + | chr7_3:23186106-23186125 | None:intergenic | 45.0% | |
| GCAATTCTTAAGCTTGCCGA+TGG | - | chr7_3:23186106-23186125 | Msa1097690:CDS | 45.0% | |
| ! | GCTGTCCTTGACAGCTATTT+TGG | - | chr7_3:23186226-23186245 | Msa1097690:CDS | 45.0% |
| TGCTAAGCTAGAAGCTTCAC+CGG | - | chr7_3:23186327-23186346 | Msa1097690:CDS | 45.0% | |
| ATAGCTGAACCCATCTTCAG+GGG | + | chr7_3:23186569-23186588 | None:intergenic | 45.0% | |
| CATAGCTGAACCCATCTTCA+GGG | + | chr7_3:23186570-23186589 | None:intergenic | 45.0% | |
| !! | CTATGCAAGCTTTGAAGCAC+TGG | - | chr7_3:23186585-23186604 | Msa1097690:CDS | 45.0% |
| AATGCAACAGAAAACTCCGC+TGG | + | chr7_3:23186673-23186692 | None:intergenic | 45.0% | |
| GCATTGCACATTGATGCGAA+TGG | - | chr7_3:23186688-23186707 | Msa1097690:CDS | 45.0% | |
| AAGGATACAACTGTGGTGAG+AGG | - | chr7_3:23186743-23186762 | Msa1097690:CDS | 45.0% | |
| ! | GAGAGGATCAATGAAGTGCT+TGG | - | chr7_3:23186760-23186779 | Msa1097690:CDS | 45.0% |
| GCAGCCATCATTTCGAACAA+AGG | + | chr7_3:23186812-23186831 | None:intergenic | 45.0% | |
| !! | GGTCTACTCTGAAATGTTGC+TGG | - | chr7_3:23186842-23186861 | Msa1097690:CDS | 45.0% |
| ! | TCTGAAATGTTGCTGGAGTG+AGG | - | chr7_3:23186849-23186868 | Msa1097690:CDS | 45.0% |
| ! | GGTGTTTTCTCTGATCCTGC+CGG | - | chr7_3:23185893-23185912 | Msa1097690:CDS | 50.0% |
| GTGGGAATGATTGAGCACCT+GGG | + | chr7_3:23186183-23186202 | None:intergenic | 50.0% | |
| TGTGGGAATGATTGAGCACC+TGG | + | chr7_3:23186184-23186203 | None:intergenic | 50.0% | |
| CCTCGGAAAAGCTACGATGT+GGG | + | chr7_3:23186201-23186220 | None:intergenic | 50.0% | |
| TCCTCGGAAAAGCTACGATG+TGG | + | chr7_3:23186202-23186221 | None:intergenic | 50.0% | |
| GTCAAGGACAGCAACTTCCT+CGG | + | chr7_3:23186218-23186237 | None:intergenic | 50.0% | |
| TCAAGGCCATAGACAGCTTC+CGG | + | chr7_3:23186349-23186368 | None:intergenic | 50.0% | |
| GACCAGTCATGCACACTTCA+AGG | + | chr7_3:23186366-23186385 | None:intergenic | 50.0% | |
| CCTTGCGGGTACTCAATGAA+CGG | - | chr7_3:23186508-23186527 | Msa1097690:CDS | 50.0% | |
| TTCAGGGGTGACATGGATAG+TGG | + | chr7_3:23186554-23186573 | None:intergenic | 50.0% | |
| ATCCATGTCACCCCTGAAGA+TGG | - | chr7_3:23186556-23186575 | Msa1097690:CDS | 50.0% | |
| TCCATGTCACCCCTGAAGAT+GGG | - | chr7_3:23186557-23186576 | Msa1097690:CDS | 50.0% | |
| GCATAGCTGAACCCATCTTC+AGG | + | chr7_3:23186571-23186590 | None:intergenic | 50.0% | |
| ATGATGGCTGCTCATCTCCA+AGG | - | chr7_3:23186821-23186840 | Msa1097690:CDS | 50.0% | |
| TGAGAACGAGGAGGAAGTGA+AGG | - | chr7_3:23186873-23186892 | Msa1097690:CDS | 50.0% | |
| ! | GGTGTTTTCTCTGATCCTGC+CGG | - | chr7_3:23185893-23185912 | Msa1097690:CDS | 50.0% |
| GTGGGAATGATTGAGCACCT+GGG | + | chr7_3:23186183-23186202 | None:intergenic | 50.0% | |
| TGTGGGAATGATTGAGCACC+TGG | + | chr7_3:23186184-23186203 | None:intergenic | 50.0% | |
| CCTCGGAAAAGCTACGATGT+GGG | + | chr7_3:23186201-23186220 | None:intergenic | 50.0% | |
| TCCTCGGAAAAGCTACGATG+TGG | + | chr7_3:23186202-23186221 | None:intergenic | 50.0% | |
| GTCAAGGACAGCAACTTCCT+CGG | + | chr7_3:23186218-23186237 | None:intergenic | 50.0% | |
| TCAAGGCCATAGACAGCTTC+CGG | + | chr7_3:23186349-23186368 | None:intergenic | 50.0% | |
| GACCAGTCATGCACACTTCA+AGG | + | chr7_3:23186366-23186385 | None:intergenic | 50.0% | |
| CCTTGCGGGTACTCAATGAA+CGG | - | chr7_3:23186508-23186527 | Msa1097690:CDS | 50.0% | |
| TTCAGGGGTGACATGGATAG+TGG | + | chr7_3:23186554-23186573 | None:intergenic | 50.0% | |
| ATCCATGTCACCCCTGAAGA+TGG | - | chr7_3:23186556-23186575 | Msa1097690:CDS | 50.0% | |
| TCCATGTCACCCCTGAAGAT+GGG | - | chr7_3:23186557-23186576 | Msa1097690:CDS | 50.0% | |
| GCATAGCTGAACCCATCTTC+AGG | + | chr7_3:23186571-23186590 | None:intergenic | 50.0% | |
| ATGATGGCTGCTCATCTCCA+AGG | - | chr7_3:23186821-23186840 | Msa1097690:CDS | 50.0% | |
| TGAGAACGAGGAGGAAGTGA+AGG | - | chr7_3:23186873-23186892 | Msa1097690:CDS | 50.0% | |
| TTCTCTGATCCTGCCGGACT+AGG | - | chr7_3:23185899-23185918 | Msa1097690:CDS | 55.0% | |
| GGTCTTTGGACAATGCTCGG+AGG | + | chr7_3:23185925-23185944 | None:intergenic | 55.0% | |
| ! | CGCGGAAGCTTCATTTTCCC+AGG | - | chr7_3:23186163-23186182 | Msa1097690:CDS | 55.0% |
| ! | CCCACATCGTAGCTTTTCCG+AGG | - | chr7_3:23186198-23186217 | Msa1097690:CDS | 55.0% |
| GCTTCACCGGAAGCTGTCTA+TGG | - | chr7_3:23186340-23186359 | Msa1097690:CDS | 55.0% | |
| GGCCTTGAAGTGTGCATGAC+TGG | - | chr7_3:23186361-23186380 | Msa1097690:CDS | 55.0% | |
| CCGTTCATTGAGTACCCGCA+AGG | + | chr7_3:23186511-23186530 | None:intergenic | 55.0% | |
| ACCCATCTTCAGGGGTGACA+TGG | + | chr7_3:23186561-23186580 | None:intergenic | 55.0% | |
| CTGGAGTGAGGATGAGAACG+AGG | - | chr7_3:23186861-23186880 | Msa1097690:CDS | 55.0% | |
| GAGTGAGGATGAGAACGAGG+AGG | - | chr7_3:23186864-23186883 | Msa1097690:CDS | 55.0% | |
| TTCTCTGATCCTGCCGGACT+AGG | - | chr7_3:23185899-23185918 | Msa1097690:CDS | 55.0% | |
| GGTCTTTGGACAATGCTCGG+AGG | + | chr7_3:23185925-23185944 | None:intergenic | 55.0% | |
| ! | CGCGGAAGCTTCATTTTCCC+AGG | - | chr7_3:23186163-23186182 | Msa1097690:CDS | 55.0% |
| ! | CCCACATCGTAGCTTTTCCG+AGG | - | chr7_3:23186198-23186217 | Msa1097690:CDS | 55.0% |
| GCTTCACCGGAAGCTGTCTA+TGG | - | chr7_3:23186340-23186359 | Msa1097690:CDS | 55.0% | |
| GGCCTTGAAGTGTGCATGAC+TGG | - | chr7_3:23186361-23186380 | Msa1097690:CDS | 55.0% | |
| CCGTTCATTGAGTACCCGCA+AGG | + | chr7_3:23186511-23186530 | None:intergenic | 55.0% | |
| ACCCATCTTCAGGGGTGACA+TGG | + | chr7_3:23186561-23186580 | None:intergenic | 55.0% | |
| CTGGAGTGAGGATGAGAACG+AGG | - | chr7_3:23186861-23186880 | Msa1097690:CDS | 55.0% | |
| GAGTGAGGATGAGAACGAGG+AGG | - | chr7_3:23186864-23186883 | Msa1097690:CDS | 55.0% | |
| CAATGCTCGGAGGCCTAGTC+CGG | + | chr7_3:23185915-23185934 | None:intergenic | 60.0% | |
| CAATGCTCGGAGGCCTAGTC+CGG | + | chr7_3:23185915-23185934 | None:intergenic | 60.0% | |
| GCTCGGAGGCCTAGTCCGGC+AGG | + | chr7_3:23185911-23185930 | None:intergenic | 75.0% | |
| GCTCGGAGGCCTAGTCCGGC+AGG | + | chr7_3:23185911-23185930 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 23185821 | 23186903 | 23185821 | ID=Msa1097690;Name=Msa1097690 |
| chr7_3 | mRNA | 23185821 | 23186903 | 23185821 | ID=Msa1097690-mRNA-1;Parent=Msa1097690;Name=Msa1097690-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|-1|0|1|-1|1|1|0|360 |
| chr7_3 | exon | 23185821 | 23186903 | 23185821 | ID=Msa1097690-mRNA-1:exon:5142;Parent=Msa1097690-mRNA-1 |
| chr7_3 | CDS | 23185821 | 23186903 | 23185821 | ID=Msa1097690-mRNA-1:cds;Parent=Msa1097690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
