AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1009980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009980 MtrunA17_Chr4g0020181 94.842 349 18 0 56 404 1 349 0.0 684
Msa1009980 MtrunA17_Chr7g0220841 94.269 349 20 0 56 404 1 349 0.0 683
Msa1009980 MtrunA17_Chr7g0220781 94.269 349 20 0 56 404 1 349 0.0 678
Msa1009980 MtrunA17_Chr4g0021521 69.014 355 107 3 58 411 1 353 8.64e-176 494
Msa1009980 MtrunA17_Chr8g0368661 63.533 351 126 2 56 405 1 350 1.07e-159 454
Msa1009980 MtrunA17_Chr7g0220811 94.709 189 10 0 56 244 1 189 2.07e-126 363
Msa1009980 MtrunA17_Chr7g0220821 93.662 142 9 0 263 404 1 142 3.08e-97 287
Msa1009980 MtrunA17_Chr2g0286961 42.982 342 173 8 64 387 5 342 4.16e-82 256
Msa1009980 MtrunA17_Chr4g0066361 41.056 341 177 7 64 386 5 339 1.06e-79 249
Msa1009980 MtrunA17_Chr7g0220831 97.826 46 1 0 10 55 1 46 3.23e-14 66.6
Msa1009980 MtrunA17_Chr4g0020171 97.826 46 1 0 10 55 1 46 3.23e-14 66.6
Msa1009980 MtrunA17_Chr7g0220791 97.826 46 1 0 10 55 1 46 4.18e-13 63.5
Msa1009980 MtrunA17_Chr7g0220801 97.826 46 1 0 10 55 1 46 4.18e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009980 AT3G02470.4 63.215 367 122 6 58 412 1 366 1.79e-160 456
Msa1009980 AT3G02470.1 63.215 367 122 6 58 412 1 366 1.79e-160 456
Msa1009980 AT3G02470.3 63.215 367 122 6 58 412 1 366 1.79e-160 456
Msa1009980 AT5G15950.2 63.536 362 127 4 58 414 1 362 1.05e-157 449
Msa1009980 AT5G15950.1 63.536 362 127 4 58 414 1 362 1.05e-157 449
Msa1009980 AT3G25570.2 65.043 349 118 3 58 402 1 349 8.34e-157 446
Msa1009980 AT3G25570.1 65.043 349 118 3 58 402 1 349 8.34e-157 446
Msa1009980 AT5G18930.1 41.765 340 181 6 64 387 5 343 2.03e-84 262
Msa1009980 AT3G17717.1 49.573 117 55 3 232 346 13 127 1.69e-31 117

Find 87 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTCATCAATTTGGTCTT+TGG 0.217491 7_1:-12463039 None:intergenic
AAATTTCCTTTGGAGGTTAA+AGG 0.271383 7_1:+12463827 Msa1009980:CDS
GTTTCAGAATCTCATCAATT+TGG 0.271425 7_1:-12463046 None:intergenic
AAGTCACATATGTCGGATTT+TGG 0.276673 7_1:-12463578 None:intergenic
GCTGTCCTTGACAGCTATTT+TGG 0.280170 7_1:+12463329 Msa1009980:CDS
GCATAGCTGAACCCATCTTC+AGG 0.344043 7_1:-12463671 None:intergenic
GCTTCGATGACTAAGAATTC+TGG 0.345633 7_1:+12463539 Msa1009980:CDS
TGTTGATTCGTATGTTCTTT+CGG 0.354000 7_1:+12463109 Msa1009980:CDS
ATGCTGATAAGTCACAAATT+TGG 0.357352 7_1:+12463390 Msa1009980:CDS
AAAACTTGACAAATTTCCTT+TGG 0.369192 7_1:+12463817 Msa1009980:CDS
GAAATTACGTTTGAGTAATC+AGG 0.375087 7_1:-12462622 None:intergenic
TCAAGGCCATAGACAGCTTT+CGG 0.378206 7_1:-12463449 None:intergenic
GCTTCACCGAAAGCTGTCTA+TGG 0.385704 7_1:+12463443 Msa1009980:CDS
GAGAGGAGCTTCGTACAAAA+AGG 0.388362 7_1:-12462545 None:intergenic
TTCTCTGATCCTGCCGGACT+AGG 0.400283 7_1:+12463002 Msa1009980:CDS
TCGGCAAGCTTAAGAATTGC+AGG 0.407592 7_1:-12463206 None:intergenic
GGTCTACTCTGAAATGTTGC+TGG 0.418240 7_1:+12463945 Msa1009980:CDS
CGTACCTTTGTTCGAAATGA+TGG 0.419044 7_1:+12463908 Msa1009980:CDS
GATCAGTCATGCACATTTCA+AGG 0.421506 7_1:-12463466 None:intergenic
CTATGCAAGCTTTGAAGCAC+TGG 0.422653 7_1:+12463688 Msa1009980:CDS
TGACTAAGAATTCTGGAATC+AGG 0.429339 7_1:+12463546 Msa1009980:CDS
AAATCTCTGAATGAACTTGT+TGG 0.430429 7_1:+12463728 Msa1009980:CDS
ATCCATGTCACCCCTGAAGA+TGG 0.438146 7_1:+12463659 Msa1009980:CDS
ACTTTGAATTTGAACCTTGC+GGG 0.440779 7_1:+12463597 Msa1009980:CDS
CAATGCTCGGAGGCCTAGTC+CGG 0.441585 7_1:-12463015 None:intergenic
ACTTGACAAATTTCCTTTGG+AGG 0.442578 7_1:+12463820 Msa1009980:CDS
TGTGGGAATGATTGAGCGCC+TGG 0.446118 7_1:-12463284 None:intergenic
TTCAGGGGTGACATGGATAG+TGG 0.468582 7_1:-12463654 None:intergenic
TTTGGTCTTTGGACAATGCT+CGG 0.490726 7_1:-12463028 None:intergenic
CTCTGAATGAACTTGTTGGA+AGG 0.494644 7_1:+12463732 Msa1009980:CDS
TGAGAACGAGGAGGAAGTGA+AGG 0.496603 7_1:+12463976 Msa1009980:CDS
TCTGAATGAACTTGTTGGAA+GGG 0.497768 7_1:+12463733 Msa1009980:CDS
TACTCAATGAACGGAATTGA+GGG 0.499113 7_1:+12463620 Msa1009980:CDS
TTGTATCCTTTAACCTCCAA+AGG 0.501527 7_1:-12463833 None:intergenic
CATAGCTGAACCCATCTTCA+GGG 0.502056 7_1:-12463670 None:intergenic
GCTCGGAGGCCTAGTCCGGC+AGG 0.509324 7_1:-12463011 None:intergenic
TCCATGTCACCCCTGAAGAT+GGG 0.515044 7_1:+12463660 Msa1009980:CDS
TCCACAATAGTGCATTCTGC+TGG 0.520646 7_1:-12463068 None:intergenic
AAGGTGTGTGAATGAACTAA+TGG 0.520867 7_1:+12462480 Msa1009980:CDS
TGGTAGCCAAGCTTATATGA+TGG 0.524204 7_1:+12463364 Msa1009980:CDS
GACTGATCTAGATAAAGAAA+AGG 0.524898 7_1:+12463481 Msa1009980:CDS
GTACTCAATGAACGGAATTG+AGG 0.525785 7_1:+12463619 Msa1009980:CDS
AATGAAGTGCTTGGAGAAGA+TGG 0.529682 7_1:+12463872 Msa1009980:CDS
ACCCATCTTCAGGGGTGACA+TGG 0.530956 7_1:-12463661 None:intergenic
AAATTCAAAGTCACATATGT+CGG 0.533465 7_1:-12463585 None:intergenic
ATTGAAGACGTTCGACCTAA+CGG 0.537316 7_1:+12462577 Msa1009980:CDS
AAGCAATTTCGTAGTCCCAC+AGG 0.538583 7_1:-12463174 None:intergenic
GTCAAGGACAGCAACTTCCT+CGG 0.543159 7_1:-12463318 None:intergenic
GTTTGCCAAAATAGCTGTCA+AGG 0.560516 7_1:-12463334 None:intergenic
CATCACCCATCATATAAGCT+TGG 0.565152 7_1:-12463370 None:intergenic
GAGAGGATCAATGAAGTGCT+TGG 0.566102 7_1:+12463863 Msa1009980:CDS
GAGGTTAAAGGATACAAATG+TGG 0.569810 7_1:+12463839 Msa1009980:CDS
AGCTTATCATCAAAACCTGT+GGG 0.576476 7_1:+12463159 Msa1009980:CDS
CAACATTTCAGAGTAGACCT+TGG 0.577948 7_1:-12463941 None:intergenic
GGTAGCCAAGCTTATATGAT+GGG 0.582473 7_1:+12463365 Msa1009980:CDS
AATGAACTAATGGAGTCAAA+AGG 0.584923 7_1:+12462490 Msa1009980:CDS
TTACGATGTGAGGAGATGGG+TGG 0.587539 7_1:+12458026 None:intergenic
GCATTGCACATTGATGCAAA+TGG 0.589627 7_1:+12463791 Msa1009980:CDS
GCAATTCTTAAGCTTGCCGA+TGG 0.593187 7_1:+12463209 Msa1009980:CDS
ATGATGGCTGCTCATCTCCA+AGG 0.593841 7_1:+12463924 Msa1009980:CDS
GCCATGACAAACTCAGCTAT+CGG 0.597878 7_1:+12462927 Msa1009980:CDS
TCCTCGGAAAAGCTACGATG+TGG 0.600474 7_1:-12463302 None:intergenic
ACCAGCAGAATGCACTATTG+TGG 0.601679 7_1:+12463067 Msa1009980:CDS
ACCGATAGCTGAGTTTGTCA+TGG 0.606711 7_1:-12462928 None:intergenic
AATGCAACAGAAAACTCAGC+TGG 0.608895 7_1:-12463773 None:intergenic
AAGCTTATCATCAAAACCTG+TGG 0.612735 7_1:+12463158 Msa1009980:CDS
CCGTTCATTGAGTACCCGCA+AGG 0.620321 7_1:-12463611 None:intergenic
TATGCAAGCTTTGAAGCACT+GGG 0.621752 7_1:+12463689 Msa1009980:CDS
AAGGATACAAATGTGGTGAG+AGG 0.622973 7_1:+12463846 Msa1009980:CDS
TCTAGATAAAGAAAAGGCAT+CGG 0.625471 7_1:+12463487 Msa1009980:CDS
GTGGGAATGATTGAGCGCCT+GGG 0.635756 7_1:-12463283 None:intergenic
CCTTGCGGGTACTCAATGAA+CGG 0.636080 7_1:+12463611 Msa1009980:CDS
CCTCGGAAAAGCTACGATGT+GGG 0.640742 7_1:-12463301 None:intergenic
GAACTAATGGAGTCAAAAGG+TGG 0.643029 7_1:+12462493 Msa1009980:CDS
CGGCAAGCTTAAGAATTGCA+GGG 0.643796 7_1:-12463205 None:intergenic
TAAGAATTCTGGAATCAGGA+AGG 0.646169 7_1:+12463550 Msa1009980:CDS
CTGGAGTGAGGATGAGAACG+AGG 0.648538 7_1:+12463964 Msa1009980:CDS
TCTGAAATGTTGCTGGAGTG+AGG 0.649297 7_1:+12463952 Msa1009980:CDS
GCAGCCATCATTTCGAACAA+AGG 0.652571 7_1:-12463912 None:intergenic
CATCATTTCGAACAAAGGTA+CGG 0.654774 7_1:-12463907 None:intergenic
GACTTTGAATTTGAACCTTG+CGG 0.658489 7_1:+12463596 Msa1009980:CDS
GGTCTTTGGACAATGCTCGG+AGG 0.663736 7_1:-12463025 None:intergenic
ATAGCTGAACCCATCTTCAG+GGG 0.696514 7_1:-12463669 None:intergenic
GAGTGAGGATGAGAACGAGG+AGG 0.703166 7_1:+12463967 Msa1009980:CDS
GAAGACGTTCGACCTAACGG+TGG 0.747756 7_1:+12462580 Msa1009980:CDS
AAATCAGTGAGATACACTCG+CGG 0.751449 7_1:+12463248 Msa1009980:CDS
TCTTCAATGATGTAACCGAG+AGG 0.771142 7_1:-12462562 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATACAAATATCATTAT+TGG - chr7_1:12458265-12458284 None:intergenic 10.0%
!!! TTTTTAATTATGTCAAATAT+TGG + chr7_1:12459319-12459338 Msa1009980:intron 10.0%
!!! CATATGATTTTTTATTTTTT+CGG - chr7_1:12459942-12459961 None:intergenic 10.0%
!!! ATATACTATATTTATTTTAG+TGG + chr7_1:12460301-12460320 Msa1009980:intron 10.0%
!!! ACATATATAATTTTTTTTTG+AGG + chr7_1:12461112-12461131 Msa1009980:intron 10.0%
!!! TTTTTTATTTTGTTTGATTT+AGG + chr7_1:12461644-12461663 Msa1009980:intron 10.0%
!!! ATTTTAAAACAAAAGAAAAA+TGG - chr7_1:12461954-12461973 None:intergenic 10.0%
!! ATAAAGTTAAAATTAATCAA+AGG - chr7_1:12462665-12462684 None:intergenic 10.0%
!! AAAAGATACCAAAAATATAA+GGG - chr7_1:12458091-12458110 None:intergenic 15.0%
!!! ATGAATTTTTACTTTTATGA+TGG - chr7_1:12459013-12459032 None:intergenic 15.0%
!!! AACAATTTTTCAATAGTTTT+AGG + chr7_1:12459982-12460001 Msa1009980:intron 15.0%
!! TTTATAGACTTTATAATTTG+CGG + chr7_1:12460070-12460089 Msa1009980:intron 15.0%
!!! TTTTTCTATTTCATGTTTAA+TGG + chr7_1:12460544-12460563 Msa1009980:intron 15.0%
!!! ATCATGTATCTATTTTTTTT+TGG + chr7_1:12460999-12461018 Msa1009980:intron 15.0%
!!! TCATGTATCTATTTTTTTTT+GGG + chr7_1:12461000-12461019 Msa1009980:intron 15.0%
!! TTGAAAAAAAAAAACACATA+AGG - chr7_1:12461583-12461602 None:intergenic 15.0%
!!! ATGTGTTTTTTTTTTTCAAT+TGG + chr7_1:12461584-12461603 Msa1009980:intron 15.0%
!! TAACTTTATAGTTATAAGAT+TGG + chr7_1:12462676-12462695 Msa1009980:intron 15.0%
!!! CAATAATACCCTTATATTTT+TGG + chr7_1:12458080-12458099 Msa1009980:intron 20.0%
!! CAAAAGATACCAAAAATATA+AGG - chr7_1:12458092-12458111 None:intergenic 20.0%
!! AACAATGCATAATATATGTA+AGG + chr7_1:12458343-12458362 Msa1009980:intron 20.0%
!! TGAAGACAAGTTTATAATAT+TGG - chr7_1:12458614-12458633 None:intergenic 20.0%
!!! CTTGTTATTGATAGTTTTTT+AGG - chr7_1:12458821-12458840 None:intergenic 20.0%
!! ATTGAATAATTAACGTACTT+GGG - chr7_1:12459077-12459096 None:intergenic 20.0%
!!! TTTTTGCTTATAATAGTGAT+TGG + chr7_1:12459113-12459132 Msa1009980:intron 20.0%
!!! GTTTCCAAAATTAACAATTT+TGG - chr7_1:12459438-12459457 None:intergenic 20.0%
!!! TTGTCTTTTGATTACTATTT+TGG - chr7_1:12459487-12459506 None:intergenic 20.0%
!!! TTGTTTAAAATCTTGCAAAA+TGG - chr7_1:12459858-12459877 None:intergenic 20.0%
!!! TTTGCAATAGTTTTAGTTTT+CGG + chr7_1:12459879-12459898 Msa1009980:intron 20.0%
!! TGTTTAAAAATCTCACAAAA+TGG - chr7_1:12459966-12459985 None:intergenic 20.0%
!!! TTATAGACTTTATAATTTGC+GGG + chr7_1:12460071-12460090 Msa1009980:intron 20.0%
!!! TTTTTCATAAACATATCAGA+GGG - chr7_1:12460631-12460650 None:intergenic 20.0%
!! ATTGTACTTGCAAAAAAATA+CGG + chr7_1:12460692-12460711 Msa1009980:intron 20.0%
!! AGGTTATAAATATCATCATT+GGG - chr7_1:12460786-12460805 None:intergenic 20.0%
!!! TTGTAAATTGAATTTTTGAC+TGG - chr7_1:12461262-12461281 None:intergenic 20.0%
!!! TAAGGTTTAAGATATGATAT+TGG - chr7_1:12461459-12461478 None:intergenic 20.0%
!!! TAATAATTGGAATTGGTTTA+AGG - chr7_1:12461477-12461496 None:intergenic 20.0%
!! GAGAAAATAATAATTGGAAT+TGG - chr7_1:12461484-12461503 None:intergenic 20.0%
!! TCAAAATTCTGATTCATAAA+AGG + chr7_1:12461674-12461693 Msa1009980:intron 20.0%
!! CAAAATTCTGATTCATAAAA+GGG + chr7_1:12461675-12461694 Msa1009980:intron 20.0%
!! AAAATTCTGATTCATAAAAG+GGG + chr7_1:12461676-12461695 Msa1009980:intron 20.0%
!!! CATGTTTCTCAATTTTTTTA+TGG + chr7_1:12462014-12462033 Msa1009980:intron 20.0%
!! TTGTTAATAATGTTGTATTC+TGG + chr7_1:12462089-12462108 Msa1009980:intron 20.0%
!! TGTTAATAATGTTGTATTCT+GGG + chr7_1:12462090-12462109 Msa1009980:intron 20.0%
!! CTTAACAAAAGTTAAGAAAT+TGG + chr7_1:12462180-12462199 Msa1009980:intron 20.0%
!! TGAAATCAACAAGAAAAATT+TGG - chr7_1:12462266-12462285 None:intergenic 20.0%
!!! CATATTTCTGGATTATTTTT+TGG - chr7_1:12462399-12462418 None:intergenic 20.0%
!! AAAATGTCAATCACAAATAT+AGG - chr7_1:12462441-12462460 None:intergenic 20.0%
!! AAAGGAATTGAAATTGAATT+GGG - chr7_1:12462647-12462666 None:intergenic 20.0%
!! CTGCATAATAAAGAAAAAAA+AGG - chr7_1:12462726-12462745 None:intergenic 20.0%
! AGATTCTATACCAAATTTGT+AGG - chr7_1:12458147-12458166 None:intergenic 25.0%
!!! TGTCATCTCATTTTTTTTTG+TGG - chr7_1:12458391-12458410 None:intergenic 25.0%
! AAAAAAAAATGAGATGACAC+TGG + chr7_1:12458392-12458411 Msa1009980:intron 25.0%
! TACATATGAGTTTACCTAAA+AGG + chr7_1:12458659-12458678 Msa1009980:intron 25.0%
! TGAAGATTAAAAACCTTTGA+GGG + chr7_1:12458718-12458737 Msa1009980:intron 25.0%
! AAGTTGAAGAAAAAATCTAG+AGG + chr7_1:12458746-12458765 Msa1009980:intron 25.0%
! AGTTGAAGAAAAAATCTAGA+GGG + chr7_1:12458747-12458766 Msa1009980:intron 25.0%
! TCAATAACAAGATAAGTATG+TGG + chr7_1:12458830-12458849 Msa1009980:intron 25.0%
! TTAATTAAGCATTCCTTGAA+TGG - chr7_1:12458971-12458990 None:intergenic 25.0%
! GATTCATTGAATAATGTATC+TGG + chr7_1:12459039-12459058 Msa1009980:intron 25.0%
! CATTGAATAATTAACGTACT+TGG - chr7_1:12459078-12459097 None:intergenic 25.0%
!! ATTATGTCAAATATTGGTTG+TGG + chr7_1:12459325-12459344 Msa1009980:intron 25.0%
!! GTTTGAAAATCACACTTTTA+AGG - chr7_1:12459409-12459428 None:intergenic 25.0%
!!! TTAATTTTGGAAACTCTGAA+GGG + chr7_1:12459444-12459463 Msa1009980:intron 25.0%
! TTAGACATGATTATTCATTC+CGG + chr7_1:12459550-12459569 Msa1009980:intron 25.0%
! TTAATATTAGCAATTGTGCT+CGG + chr7_1:12459595-12459614 Msa1009980:intron 25.0%
! GATTGACAGTAATAATGTAA+TGG - chr7_1:12459691-12459710 None:intergenic 25.0%
! TGATAACTATTCTTAATCAG+TGG + chr7_1:12459749-12459768 Msa1009980:intron 25.0%
! GTAATAATGTAATGACGATA+TGG - chr7_1:12459818-12459837 None:intergenic 25.0%
! AAAATCTTGCAAAATGGATA+TGG - chr7_1:12459852-12459871 None:intergenic 25.0%
!!! TCAATAGTTTTAGGTTTTAG+TGG + chr7_1:12459991-12460010 Msa1009980:intron 25.0%
!! AAAATCACGTATGTCAATTT+TGG - chr7_1:12460019-12460038 None:intergenic 25.0%
!! GATTTTTGTCATCTTAAACT+TGG + chr7_1:12460033-12460052 Msa1009980:intron 25.0%
!! TATAGACTTTATAATTTGCG+GGG + chr7_1:12460072-12460091 Msa1009980:intron 25.0%
! TTGATAGAACAATATAATGG+AGG - chr7_1:12460106-12460125 None:intergenic 25.0%
!!! CAGTTGATAGAACAATATAA+TGG - chr7_1:12460109-12460128 None:intergenic 25.0%
!!! ATTTATTTTAGTGGTCCATT+TGG + chr7_1:12460310-12460329 Msa1009980:intron 25.0%
! GTCAGAAAAAAAAATCCAAA+TGG - chr7_1:12460328-12460347 None:intergenic 25.0%
! CTCACATTGATCAATAATAA+CGG - chr7_1:12460358-12460377 None:intergenic 25.0%
!!! CTTTTTCATAAACATATCAG+AGG - chr7_1:12460632-12460651 None:intergenic 25.0%
! AAAATACGGTAAAGAATACT+AGG + chr7_1:12460706-12460725 Msa1009980:intron 25.0%
! AAATACGGTAAAGAATACTA+GGG + chr7_1:12460707-12460726 Msa1009980:intron 25.0%
! GAGGTTATAAATATCATCAT+TGG - chr7_1:12460787-12460806 None:intergenic 25.0%
! AAGTTCTATACCAAATTTGA+AGG + chr7_1:12461291-12461310 Msa1009980:intron 25.0%
! AGTTCTATACCAAATTTGAA+GGG + chr7_1:12461292-12461311 Msa1009980:intron 25.0%
!! AAAATGATACGAAAAGCATA+AGG + chr7_1:12461368-12461387 Msa1009980:intron 25.0%
!! AAATGATACGAAAAGCATAA+GGG + chr7_1:12461369-12461388 Msa1009980:intron 25.0%
! GTTTATTTATATAGAGGCTT+AGG - chr7_1:12461416-12461435 None:intergenic 25.0%
! GGAGTAGTTTATTTATATAG+AGG - chr7_1:12461422-12461441 None:intergenic 25.0%
! CGAAGAGAGAAAATAATAAT+TGG - chr7_1:12461490-12461509 None:intergenic 25.0%
! TCTTAAACAACACAAACAAT+TGG - chr7_1:12462208-12462227 None:intergenic 25.0%
!!! GACATTTTGCTTTATTCTTT+TGG + chr7_1:12462453-12462472 Msa1009980:intron 25.0%
! CAAAGGAATTGAAATTGAAT+TGG - chr7_1:12462648-12462667 None:intergenic 25.0%
!! AGTTATAAGATTGGTTGATT+TGG + chr7_1:12462685-12462704 Msa1009980:intron 25.0%
!!! GAGATGACTTTTTTTGAAAA+TGG + chr7_1:12462975-12462994 Msa1009980:CDS 25.0%
! AAATTCAAAGTCACATATGT+CGG - chr7_1:12463588-12463607 None:intergenic 25.0%
! AAAACTTGACAAATTTCCTT+TGG + chr7_1:12463817-12463836 Msa1009980:CDS 25.0%
ATACCAAATTTGTAGGAGAA+GGG - chr7_1:12458140-12458159 None:intergenic 30.0%
TATACCAAATTTGTAGGAGA+AGG - chr7_1:12458141-12458160 None:intergenic 30.0%
TGCATAATATATGTAAGGTC+TGG + chr7_1:12458348-12458367 Msa1009980:intron 30.0%
GCATAATATATGTAAGGTCT+GGG + chr7_1:12458349-12458368 Msa1009980:intron 30.0%
CATAATATATGTAAGGTCTG+GGG + chr7_1:12458350-12458369 Msa1009980:intron 30.0%
!!! CATCTCATTTTTTTTTGTGG+TGG - chr7_1:12458388-12458407 None:intergenic 30.0%
GTGAAGATTAAAAACCTTTG+AGG + chr7_1:12458717-12458736 Msa1009980:intron 30.0%
AAGATAAATAGTCCCCTTAA+CGG - chr7_1:12458881-12458900 None:intergenic 30.0%
TGCTTATAATAGTGATTGGA+CGG + chr7_1:12459117-12459136 Msa1009980:intron 30.0%
TTCTCATCAACTTATCAATC+TGG + chr7_1:12459153-12459172 Msa1009980:intron 30.0%
! AAGTGTGATTTTCAAACTAG+TGG + chr7_1:12459412-12459431 Msa1009980:intron 30.0%
! GTGGCCAAAATTGTTAATTT+TGG + chr7_1:12459431-12459450 Msa1009980:intron 30.0%
!! GTTAATTTTGGAAACTCTGA+AGG + chr7_1:12459443-12459462 Msa1009980:intron 30.0%
!! TTTTGGCTAAAATGCACTTT+TGG - chr7_1:12459470-12459489 None:intergenic 30.0%
CTAATATTAAGTACCTAGTC+GGG - chr7_1:12459585-12459604 None:intergenic 30.0%
GCTAATATTAAGTACCTAGT+CGG - chr7_1:12459586-12459605 None:intergenic 30.0%
TAATATTAGCAATTGTGCTC+GGG + chr7_1:12459596-12459615 Msa1009980:intron 30.0%
! TTTATTTGGTGGAATTGTCA+GGG - chr7_1:12459631-12459650 None:intergenic 30.0%
!! TTTTATTTGGTGGAATTGTC+AGG - chr7_1:12459632-12459651 None:intergenic 30.0%
!!! CAAGGGAAATCAGTTTTATT+TGG - chr7_1:12459645-12459664 None:intergenic 30.0%
! CAAATAAAACTGATTTCCCT+TGG + chr7_1:12459643-12459662 Msa1009980:intron 30.0%
TAACTATTCTTAATCAGTGG+CGG + chr7_1:12459752-12459771 Msa1009980:intron 30.0%
TCTTAAACTTGGTTGATTAG+CGG + chr7_1:12460044-12460063 Msa1009980:intron 30.0%
! ATAGACTTTATAATTTGCGG+GGG + chr7_1:12460073-12460092 Msa1009980:intron 30.0%
CTGAAAATGCCTACAATTTA+CGG + chr7_1:12460126-12460145 Msa1009980:intron 30.0%
CATTAAGTACAAAGTTGAAG+TGG - chr7_1:12460255-12460274 None:intergenic 30.0%
ACATTGATCAATAATAACGG+TGG - chr7_1:12460355-12460374 None:intergenic 30.0%
!! GAGAATTTATTTTCTCGTGA+AGG - chr7_1:12460441-12460460 None:intergenic 30.0%
AGAATATTGTGTGTGTGATT+GGG - chr7_1:12460498-12460517 None:intergenic 30.0%
TAGAATATTGTGTGTGTGAT+TGG - chr7_1:12460499-12460518 None:intergenic 30.0%
AGGGTTCAGTATAATAATCT+AGG + chr7_1:12460726-12460745 Msa1009980:intron 30.0%
GGGTTCAGTATAATAATCTA+GGG + chr7_1:12460727-12460746 Msa1009980:intron 30.0%
TGATATTTATAACCTCCTTG+TGG + chr7_1:12460791-12460810 Msa1009980:intron 30.0%
GATATTTATAACCTCCTTGT+GGG + chr7_1:12460792-12460811 Msa1009980:intron 30.0%
! AGCCTTTAGGAATATTATGA+CGG + chr7_1:12460966-12460985 Msa1009980:intron 30.0%
AACCGTCATAATATTCCTAA+AGG - chr7_1:12460971-12460990 None:intergenic 30.0%
TACTCACAGTTGTAAACAAT+TGG - chr7_1:12461726-12461745 None:intergenic 30.0%
TTAATGTTGTTGCTAGCATT+TGG + chr7_1:12461858-12461877 Msa1009980:intron 30.0%
AATGAACTAATGGAGTCAAA+AGG + chr7_1:12462490-12462509 Msa1009980:CDS 30.0%
GAAATTACGTTTGAGTAATC+AGG - chr7_1:12462625-12462644 None:intergenic 30.0%
!!! AAACCATCCTGAGATTTTTT+GGG + chr7_1:12462755-12462774 Msa1009980:intron 30.0%
! TTTTCTCCTTTGATTCAAGA+TGG + chr7_1:12462905-12462924 Msa1009980:intron 30.0%
GTTTCAGAATCTCATCAATT+TGG - chr7_1:12463049-12463068 None:intergenic 30.0%
!! TGTTGATTCGTATGTTCTTT+CGG + chr7_1:12463109-12463128 Msa1009980:CDS 30.0%
ATGCTGATAAGTCACAAATT+TGG + chr7_1:12463390-12463409 Msa1009980:CDS 30.0%
GACTGATCTAGATAAAGAAA+AGG + chr7_1:12463481-12463500 Msa1009980:CDS 30.0%
! TCTAGATAAAGAAAAGGCAT+CGG + chr7_1:12463487-12463506 Msa1009980:CDS 30.0%
AAATCTCTGAATGAACTTGT+TGG + chr7_1:12463728-12463747 Msa1009980:CDS 30.0%
! AAATTTCCTTTGGAGGTTAA+AGG + chr7_1:12463827-12463846 Msa1009980:CDS 30.0%
CATCTCATCTAAATGCTCTT+GGG - chr7_1:12458289-12458308 None:intergenic 35.0%
TCATCTCATCTAAATGCTCT+TGG - chr7_1:12458290-12458309 None:intergenic 35.0%
!!! TCATTTTTTTTTGTGGTGGC+CGG - chr7_1:12458384-12458403 None:intergenic 35.0%
TTAACGTTGTTGCATGTTCA+AGG - chr7_1:12458457-12458476 None:intergenic 35.0%
ACCGATCGTCAAAAAAAAAG+AGG + chr7_1:12458686-12458705 Msa1009980:intron 35.0%
!!! CCCTCTTTTTTTTTGACGAT+CGG - chr7_1:12458690-12458709 None:intergenic 35.0%
CCGATCGTCAAAAAAAAAGA+GGG + chr7_1:12458687-12458706 Msa1009980:intron 35.0%
! TTCAACTTTTAGTCCCTCAA+AGG - chr7_1:12458734-12458753 None:intergenic 35.0%
GAGGGACTAAAACAAAAAGT+TGG + chr7_1:12458765-12458784 Msa1009980:intron 35.0%
AGATAAATAGTCCCCTTAAC+GGG - chr7_1:12458880-12458899 None:intergenic 35.0%
! TTATGTGCTCAACATTTTCC+CGG + chr7_1:12458899-12458918 Msa1009980:intron 35.0%
!! CTTTTATGATGGTGACAAGA+GGG - chr7_1:12459002-12459021 None:intergenic 35.0%
!! ACTTTTATGATGGTGACAAG+AGG - chr7_1:12459003-12459022 None:intergenic 35.0%
TACGATCACCATGTACATTT+CGG - chr7_1:12459201-12459220 None:intergenic 35.0%
GATCGTAAAATCTTGTTACG+AGG + chr7_1:12459214-12459233 Msa1009980:intron 35.0%
ACGAGGTTAGATTCAAAGTA+AGG + chr7_1:12459231-12459250 Msa1009980:intron 35.0%
TTAGACCTACCAACAAAAAC+AGG - chr7_1:12459289-12459308 None:intergenic 35.0%
TGTGGAAGAAGTTGAAAGAT+TGG + chr7_1:12459343-12459362 Msa1009980:intron 35.0%
! AAAATTTTCACTCGACCGTT+GGG + chr7_1:12459370-12459389 Msa1009980:intron 35.0%
!!! GGGAAATCAGTTTTATTTGG+TGG - chr7_1:12459642-12459661 None:intergenic 35.0%
! ATAAAACTGATTTCCCTTGG+CGG + chr7_1:12459646-12459665 Msa1009980:intron 35.0%
ATCATTCAGACATTGCTATG+GGG - chr7_1:12459724-12459743 None:intergenic 35.0%
CATCATTCAGACATTGCTAT+GGG - chr7_1:12459725-12459744 None:intergenic 35.0%
AATGACGATATGGTTTGAGT+GGG - chr7_1:12459808-12459827 None:intergenic 35.0%
TAATGACGATATGGTTTGAG+TGG - chr7_1:12459809-12459828 None:intergenic 35.0%
ACAATACGACCGTAAATTGT+AGG - chr7_1:12460138-12460157 None:intergenic 35.0%
!! GAGGTTGACTTTTAAAAGCT+AGG - chr7_1:12460230-12460249 None:intergenic 35.0%
TAAGTACAAAGTTGAAGTGG+TGG - chr7_1:12460252-12460271 None:intergenic 35.0%
TTGATCAATAATAACGGTGG+TGG - chr7_1:12460352-12460371 None:intergenic 35.0%
AAGGTTTGATATGGTTGAAG+AGG - chr7_1:12460422-12460441 None:intergenic 35.0%
TTTCTCGTGAAGGTTTGATA+TGG - chr7_1:12460431-12460450 None:intergenic 35.0%
CTAGGGTTTAAACTGACTAT+TGG + chr7_1:12460744-12460763 Msa1009980:intron 35.0%
!! TGGTCTTTTGGTCTTTTATG+CGG + chr7_1:12460847-12460866 Msa1009980:intron 35.0%
! TTTCTAGAGGTTAAGAAAGG+CGG + chr7_1:12460870-12460889 Msa1009980:intron 35.0%
TACCAAATTTGAAGGGAATG+TGG + chr7_1:12461299-12461318 Msa1009980:intron 35.0%
TACCACATTCCCTTCAAATT+TGG - chr7_1:12461304-12461323 None:intergenic 35.0%
TTTATATAGAGGCTTAGGTG+AGG - chr7_1:12461411-12461430 None:intergenic 35.0%
ATATTGGAGTTAGAGAAGAG+CGG - chr7_1:12461443-12461462 None:intergenic 35.0%
CAGAGAATCAAGAAGAATTG+AGG - chr7_1:12461542-12461561 None:intergenic 35.0%
AACACAAAGCTATGCAATCT+GGG - chr7_1:12462144-12462163 None:intergenic 35.0%
AAACACAAAGCTATGCAATC+TGG - chr7_1:12462145-12462164 None:intergenic 35.0%
CAATGCTATGCAATCAAATC+TGG - chr7_1:12462330-12462349 None:intergenic 35.0%
! TCAATTGCGTTTGGAACAAT+TGG + chr7_1:12462359-12462378 Msa1009980:intron 35.0%
TTGCAACGAAGTCATATTTC+TGG - chr7_1:12462411-12462430 None:intergenic 35.0%
!! GCTTTATTCTTTTGGCAGAA+AGG + chr7_1:12462461-12462480 Msa1009980:intron 35.0%
AAGGTGTGTGAATGAACTAA+TGG + chr7_1:12462480-12462499 Msa1009980:CDS 35.0%
! AATTTTTCTACTCCACCGTT+AGG - chr7_1:12462595-12462614 None:intergenic 35.0%
!!! CAAACCATCCTGAGATTTTT+TGG + chr7_1:12462754-12462773 Msa1009980:intron 35.0%
ATCAGAACCCAAAAAATCTC+AGG - chr7_1:12462765-12462784 None:intergenic 35.0%
! TGGGTTCTGATATAGTTCTT+AGG + chr7_1:12462774-12462793 Msa1009980:intron 35.0%
TGAAGAAAAAAGCAAAGAGG+AGG - chr7_1:12462849-12462868 None:intergenic 35.0%
GGTTGAAGAAAAAAGCAAAG+AGG - chr7_1:12462852-12462871 None:intergenic 35.0%
TGTATAGAGAAAGGGAACAA+GGG - chr7_1:12462873-12462892 None:intergenic 35.0%
CGTTGTTGTGTATAGAGAAA+GGG - chr7_1:12462881-12462900 None:intergenic 35.0%
TCGTTGTTGTGTATAGAGAA+AGG - chr7_1:12462882-12462901 None:intergenic 35.0%
!!! GTTTTGAAGGCTATGAAAAG+AGG + chr7_1:12462949-12462968 Msa1009980:CDS 35.0%
AAGCTTATCATCAAAACCTG+TGG + chr7_1:12463158-12463177 Msa1009980:CDS 35.0%
AGCTTATCATCAAAACCTGT+GGG + chr7_1:12463159-12463178 Msa1009980:CDS 35.0%
!!! CACAGCTATTTTAAGACCAT+CGG - chr7_1:12463228-12463247 None:intergenic 35.0%
!!! TATTTTGGCAAACTAGGTTC+TGG + chr7_1:12463344-12463363 Msa1009980:CDS 35.0%
!! TGACTAAGAATTCTGGAATC+AGG + chr7_1:12463546-12463565 Msa1009980:CDS 35.0%
!! TAAGAATTCTGGAATCAGGA+AGG + chr7_1:12463550-12463569 Msa1009980:CDS 35.0%
! AAGTCACATATGTCGGATTT+TGG - chr7_1:12463581-12463600 None:intergenic 35.0%
GACTTTGAATTTGAACCTTG+CGG + chr7_1:12463596-12463615 Msa1009980:CDS 35.0%
ACTTTGAATTTGAACCTTGC+GGG + chr7_1:12463597-12463616 Msa1009980:CDS 35.0%
TACTCAATGAACGGAATTGA+GGG + chr7_1:12463620-12463639 Msa1009980:CDS 35.0%
!! TCTGAATGAACTTGTTGGAA+GGG + chr7_1:12463733-12463752 Msa1009980:CDS 35.0%
ACTTGACAAATTTCCTTTGG+AGG + chr7_1:12463820-12463839 Msa1009980:CDS 35.0%
TTGTATCCTTTAACCTCCAA+AGG - chr7_1:12463836-12463855 None:intergenic 35.0%
GAGGTTAAAGGATACAAATG+TGG + chr7_1:12463839-12463858 Msa1009980:CDS 35.0%
CATCATTTCGAACAAAGGTA+CGG - chr7_1:12463910-12463929 None:intergenic 35.0%
!!! CATTTTTTTTTGTGGTGGCC+GGG - chr7_1:12458383-12458402 None:intergenic 40.0%
TTCAAGGCTGAATTTGAACC+GGG - chr7_1:12458441-12458460 None:intergenic 40.0%
GTTCAAGGCTGAATTTGAAC+CGG - chr7_1:12458442-12458461 None:intergenic 40.0%
GATAAATAGTCCCCTTAACG+GGG - chr7_1:12458879-12458898 None:intergenic 40.0%
ACCTCTAGCAATTAGAAGTC+CGG - chr7_1:12458921-12458940 None:intergenic 40.0%
CAAGATGCTTAGACCATTCA+AGG + chr7_1:12458955-12458974 Msa1009980:intron 40.0%
TCTTTCAGCCGAAATGTACA+TGG + chr7_1:12459190-12459209 Msa1009980:intron 40.0%
AGGTTATTGAGAGTCATCTG+AGG + chr7_1:12459251-12459270 Msa1009980:intron 40.0%
!!! CTTGGACTACCTGTTTTTGT+TGG + chr7_1:12459277-12459296 Msa1009980:intron 40.0%
!!! GACTACCTGTTTTTGTTGGT+AGG + chr7_1:12459281-12459300 Msa1009980:intron 40.0%
! GAAAATTTTCACTCGACCGT+TGG + chr7_1:12459369-12459388 Msa1009980:intron 40.0%
TCATTCAGACATTGCTATGG+GGG - chr7_1:12459723-12459742 None:intergenic 40.0%
GCATCATTCAGACATTGCTA+TGG - chr7_1:12459726-12459745 None:intergenic 40.0%
! TGAGACATTACGTCACTTTG+CGG - chr7_1:12459918-12459937 None:intergenic 40.0%
TAAACTTGGTTGATTAGCGG+AGG + chr7_1:12460047-12460066 Msa1009980:intron 40.0%
TGATATGGTTGAAGAGGTTG+AGG - chr7_1:12460416-12460435 None:intergenic 40.0%
AAACATATCAGAGGGCGAAT+GGG - chr7_1:12460623-12460642 None:intergenic 40.0%
TAAACATATCAGAGGGCGAA+TGG - chr7_1:12460624-12460643 None:intergenic 40.0%
AACGCTAAAATAAGCCCACA+AGG - chr7_1:12460809-12460828 None:intergenic 40.0%
ACCAAAAGACCAACTTCCTT+GGG - chr7_1:12460839-12460858 None:intergenic 40.0%
!! GTCTTTTATGCGGTTTCTAG+AGG + chr7_1:12460857-12460876 Msa1009980:intron 40.0%
! CGGTTTCTAGAGGTTAAGAA+AGG + chr7_1:12460867-12460886 Msa1009980:intron 40.0%
! TAGAGGGCTTTTAAGCCTTT+AGG + chr7_1:12460953-12460972 Msa1009980:intron 40.0%
TCTGTTGTCCCATTTCTTCA+CGG - chr7_1:12461336-12461355 None:intergenic 40.0%
TCTTCGTTCTTTCTTTCCGT+TGG + chr7_1:12461504-12461523 Msa1009980:intron 40.0%
! GGAATTCGAGAAGCATAGAT+CGG + chr7_1:12461697-12461716 Msa1009980:intron 40.0%
ATGTTGTTGCTAGCATTTGG+TGG + chr7_1:12461861-12461880 Msa1009980:intron 40.0%
CGTTCTCTTTCAATTGCGTT+TGG + chr7_1:12462350-12462369 Msa1009980:intron 40.0%
GAACTAATGGAGTCAAAAGG+TGG + chr7_1:12462493-12462512 Msa1009980:CDS 40.0%
! TTTTTGTACGAAGCTCCTCT+CGG + chr7_1:12462547-12462566 Msa1009980:CDS 40.0%
TCTTCAATGATGTAACCGAG+AGG - chr7_1:12462565-12462584 None:intergenic 40.0%
ATTGAAGACGTTCGACCTAA+CGG + chr7_1:12462577-12462596 Msa1009980:CDS 40.0%
GAACCCAAAAAATCTCAGGA+TGG - chr7_1:12462761-12462780 None:intergenic 40.0%
CAAAGAGGAGGACAAGAAAA+AGG - chr7_1:12462837-12462856 None:intergenic 40.0%
GTGTATAGAGAAAGGGAACA+AGG - chr7_1:12462874-12462893 None:intergenic 40.0%
TCATGGCCATCTTGAATCAA+AGG - chr7_1:12462914-12462933 None:intergenic 40.0%
!!! AACTCAGCTATCGGTTTTGA+AGG + chr7_1:12462936-12462955 Msa1009980:CDS 40.0%
AAATCAGTGAGATACACTCG+CGG + chr7_1:12463248-12463267 Msa1009980:CDS 40.0%
GTTTGCCAAAATAGCTGTCA+AGG - chr7_1:12463337-12463356 None:intergenic 40.0%
!!! GACAGCTATTTTGGCAAACT+AGG + chr7_1:12463338-12463357 Msa1009980:CDS 40.0%
TGGTAGCCAAGCTTATATGA+TGG + chr7_1:12463364-12463383 Msa1009980:CDS 40.0%
GGTAGCCAAGCTTATATGAT+GGG + chr7_1:12463365-12463384 Msa1009980:CDS 40.0%
CATCACCCATCATATAAGCT+TGG - chr7_1:12463373-12463392 None:intergenic 40.0%
GATCAGTCATGCACATTTCA+AGG - chr7_1:12463469-12463488 None:intergenic 40.0%
GCTTCGATGACTAAGAATTC+TGG + chr7_1:12463539-12463558 Msa1009980:CDS 40.0%
!! CACATATGTCGGATTTTGGT+AGG - chr7_1:12463577-12463596 None:intergenic 40.0%
GTACTCAATGAACGGAATTG+AGG + chr7_1:12463619-12463638 Msa1009980:CDS 40.0%
!! TATGCAAGCTTTGAAGCACT+GGG + chr7_1:12463689-12463708 Msa1009980:CDS 40.0%
!! CTCTGAATGAACTTGTTGGA+AGG + chr7_1:12463732-12463751 Msa1009980:CDS 40.0%
AATGCAACAGAAAACTCAGC+TGG - chr7_1:12463776-12463795 None:intergenic 40.0%
GCATTGCACATTGATGCAAA+TGG + chr7_1:12463791-12463810 Msa1009980:CDS 40.0%
AAGGATACAAATGTGGTGAG+AGG + chr7_1:12463846-12463865 Msa1009980:CDS 40.0%
! AATGAAGTGCTTGGAGAAGA+TGG + chr7_1:12463872-12463891 Msa1009980:CDS 40.0%
CGTACCTTTGTTCGAAATGA+TGG + chr7_1:12463908-12463927 Msa1009980:CDS 40.0%
CAACATTTCAGAGTAGACCT+TGG - chr7_1:12463944-12463963 None:intergenic 40.0%
AATTTGTAGGAGAAGGGACG+TGG - chr7_1:12458134-12458153 None:intergenic 45.0%
CGTCCCTTCTCCTACAAATT+TGG + chr7_1:12458134-12458153 Msa1009980:intron 45.0%
!! GATGAGTTTTGTCCTCAGCA+AGG + chr7_1:12458852-12458871 Msa1009980:intron 45.0%
CCTCTAGCAATTAGAAGTCC+GGG - chr7_1:12458920-12458939 None:intergenic 45.0%
! GAGAGTCATCTGAGGTATCT+TGG + chr7_1:12459259-12459278 Msa1009980:intron 45.0%
! CCTAGTCGGGTATTTTCAAC+CGG - chr7_1:12459572-12459591 None:intergenic 45.0%
GGTGGAATTGTCAGGGTTTA+AGG - chr7_1:12459624-12459643 None:intergenic 45.0%
AGACATTGCTATGGGGGATA+TGG - chr7_1:12459717-12459736 None:intergenic 45.0%
! AGACATTACGTCACTTTGCG+GGG - chr7_1:12459916-12459935 None:intergenic 45.0%
! GAGACATTACGTCACTTTGC+GGG - chr7_1:12459917-12459936 None:intergenic 45.0%
GTACAAAGTTGAAGTGGTGG+AGG - chr7_1:12460249-12460268 None:intergenic 45.0%
GCTAAAATAAGCCCACAAGG+AGG - chr7_1:12460806-12460825 None:intergenic 45.0%
TTTAGCGTTACTTCACCCCA+AGG + chr7_1:12460820-12460839 Msa1009980:intron 45.0%
TTACTTCACCCCAAGGAAGT+TGG + chr7_1:12460827-12460846 Msa1009980:intron 45.0%
CCAAAAGACCAACTTCCTTG+GGG - chr7_1:12460838-12460857 None:intergenic 45.0%
GACCAAAAGACCAACTTCCT+TGG - chr7_1:12460840-12460859 None:intergenic 45.0%
! GGCTTAAAAGCCCTCTAGAA+AGG - chr7_1:12460950-12460969 None:intergenic 45.0%
GAGGAGCGAAAGAAAACCAA+CGG - chr7_1:12461523-12461542 None:intergenic 45.0%
AGGAGCTTCGTACAAAAAGG+AGG - chr7_1:12462545-12462564 None:intergenic 45.0%
GAGAGGAGCTTCGTACAAAA+AGG - chr7_1:12462548-12462567 None:intergenic 45.0%
AGGAGGACAAGAAAAAGGAG+AGG - chr7_1:12462832-12462851 None:intergenic 45.0%
GCCATGACAAACTCAGCTAT+CGG + chr7_1:12462927-12462946 Msa1009980:CDS 45.0%
ACCGATAGCTGAGTTTGTCA+TGG - chr7_1:12462931-12462950 None:intergenic 45.0%
ACCAGCAGAATGCACTATTG+TGG + chr7_1:12463067-12463086 Msa1009980:CDS 45.0%
TCCACAATAGTGCATTCTGC+TGG - chr7_1:12463071-12463090 None:intergenic 45.0%
AAGCAATTTCGTAGTCCCAC+AGG - chr7_1:12463177-12463196 None:intergenic 45.0%
CGGCAAGCTTAAGAATTGCA+GGG - chr7_1:12463208-12463227 None:intergenic 45.0%
TCGGCAAGCTTAAGAATTGC+AGG - chr7_1:12463209-12463228 None:intergenic 45.0%
GCAATTCTTAAGCTTGCCGA+TGG + chr7_1:12463209-12463228 Msa1009980:CDS 45.0%
! GCTGTCCTTGACAGCTATTT+TGG + chr7_1:12463329-12463348 Msa1009980:CDS 45.0%
TCAAGGCCATAGACAGCTTT+CGG - chr7_1:12463452-12463471 None:intergenic 45.0%
ATAGCTGAACCCATCTTCAG+GGG - chr7_1:12463672-12463691 None:intergenic 45.0%
CATAGCTGAACCCATCTTCA+GGG - chr7_1:12463673-12463692 None:intergenic 45.0%
!! CTATGCAAGCTTTGAAGCAC+TGG + chr7_1:12463688-12463707 Msa1009980:CDS 45.0%
! GAGAGGATCAATGAAGTGCT+TGG + chr7_1:12463863-12463882 Msa1009980:CDS 45.0%
GCAGCCATCATTTCGAACAA+AGG - chr7_1:12463915-12463934 None:intergenic 45.0%
!! GGTCTACTCTGAAATGTTGC+TGG + chr7_1:12463945-12463964 Msa1009980:CDS 45.0%
! TCTGAAATGTTGCTGGAGTG+AGG + chr7_1:12463952-12463971 Msa1009980:CDS 45.0%
!!! AAAAAATTCTAAAATTTTTT+GGG - chr7_1:12458486-12458505 None:intergenic 5.0%
!!! TAAAAAATTCTAAAATTTTT+TGG - chr7_1:12458487-12458506 None:intergenic 5.0%
!!! TATTAATTTTTAAATTTTTG+CGG - chr7_1:12458540-12458559 None:intergenic 5.0%
!!! ATTGTTATTATTATTTTTTA+TGG + chr7_1:12460656-12460675 Msa1009980:intron 5.0%
!!! TATTATCATAATATTTTTTT+AGG + chr7_1:12461027-12461046 Msa1009980:intron 5.0%
GGTGGTTTATATAGGGGCTG+AGG + chr7_1:12458044-12458063 Msa1009980:intron 50.0%
TCAACTGAACTAAGCTCGCG+AGG - chr7_1:12458319-12458338 None:intergenic 50.0%
! AAGGTCTGGGGTTCAAATCC+CGG + chr7_1:12458362-12458381 Msa1009980:intron 50.0%
TCTAACATACCCAAGCGTCC+CGG + chr7_1:12458420-12458439 Msa1009980:intron 50.0%
GAATTTGAACCGGGACGCTT+GGG - chr7_1:12458432-12458451 None:intergenic 50.0%
TGAATTTGAACCGGGACGCT+TGG - chr7_1:12458433-12458452 None:intergenic 50.0%
! GACGATCGGTCTCTCCTTTT+AGG - chr7_1:12458676-12458695 None:intergenic 50.0%
CCCGGACTTCTAATTGCTAG+AGG + chr7_1:12458917-12458936 Msa1009980:intron 50.0%
TCGACCGTTGGGATAGAAGT+TGG + chr7_1:12459381-12459400 Msa1009980:intron 50.0%
CGACCGTTGGGATAGAAGTT+GGG + chr7_1:12459382-12459401 Msa1009980:intron 50.0%
GACCGTTGGGATAGAAGTTG+GGG + chr7_1:12459383-12459402 Msa1009980:intron 50.0%
CCGGTTGAAAATACCCGACT+AGG + chr7_1:12459569-12459588 Msa1009980:intron 50.0%
GATATGGTTTGAGTGGGTCG+TGG - chr7_1:12459802-12459821 None:intergenic 50.0%
! TACGTCACTTTGCGGGGATT+TGG - chr7_1:12459910-12459929 None:intergenic 50.0%
AGTGCACTTTGCGATGAGGT+GGG - chr7_1:12460384-12460403 None:intergenic 50.0%
! AGAGAGTGCACTTTGCGATG+AGG - chr7_1:12460388-12460407 None:intergenic 50.0%
!!! CCCCAAGGAAGTTGGTCTTT+TGG + chr7_1:12460835-12460854 Msa1009980:intron 50.0%
GACGTCTGAGCCTTTCTAGA+GGG + chr7_1:12460937-12460956 Msa1009980:intron 50.0%
! GGTGTTTTCTCTGATCCTGC+CGG + chr7_1:12462996-12463015 Msa1009980:CDS 50.0%
CCTCGGAAAAGCTACGATGT+GGG - chr7_1:12463304-12463323 None:intergenic 50.0%
TCCTCGGAAAAGCTACGATG+TGG - chr7_1:12463305-12463324 None:intergenic 50.0%
GTCAAGGACAGCAACTTCCT+CGG - chr7_1:12463321-12463340 None:intergenic 50.0%
GCTTCACCGAAAGCTGTCTA+TGG + chr7_1:12463443-12463462 Msa1009980:CDS 50.0%
CCTTGCGGGTACTCAATGAA+CGG + chr7_1:12463611-12463630 Msa1009980:CDS 50.0%
TTCAGGGGTGACATGGATAG+TGG - chr7_1:12463657-12463676 None:intergenic 50.0%
ATCCATGTCACCCCTGAAGA+TGG + chr7_1:12463659-12463678 Msa1009980:CDS 50.0%
TCCATGTCACCCCTGAAGAT+GGG + chr7_1:12463660-12463679 Msa1009980:CDS 50.0%
GCATAGCTGAACCCATCTTC+AGG - chr7_1:12463674-12463693 None:intergenic 50.0%
ATGATGGCTGCTCATCTCCA+AGG + chr7_1:12463924-12463943 Msa1009980:CDS 50.0%
TGAGAACGAGGAGGAAGTGA+AGG + chr7_1:12463976-12463995 Msa1009980:CDS 50.0%
CTCAGCAAGGTCCCCGTTAA+GGG + chr7_1:12458865-12458884 Msa1009980:intron 55.0%
TCAGCAAGGTCCCCGTTAAG+GGG + chr7_1:12458866-12458885 Msa1009980:intron 55.0%
GGCCCCAACTTCTATCCCAA+CGG - chr7_1:12459388-12459407 None:intergenic 55.0%
! ATCAGTGGCGGAGTCCTTCA+TGG + chr7_1:12459764-12459783 Msa1009980:intron 55.0%
! TCAGTGGCGGAGTCCTTCAT+GGG + chr7_1:12459765-12459784 Msa1009980:intron 55.0%
GAGTGCACTTTGCGATGAGG+TGG - chr7_1:12460385-12460404 None:intergenic 55.0%
GGACGTCTGAGCCTTTCTAG+AGG + chr7_1:12460936-12460955 Msa1009980:intron 55.0%
GTGCCACGCCGTGAAGAAAT+GGG + chr7_1:12461325-12461344 Msa1009980:intron 55.0%
TGTCCCATTTCTTCACGGCG+TGG - chr7_1:12461331-12461350 None:intergenic 55.0%
GAAGACGTTCGACCTAACGG+TGG + chr7_1:12462580-12462599 Msa1009980:CDS 55.0%
TTCTCTGATCCTGCCGGACT+AGG + chr7_1:12463002-12463021 Msa1009980:CDS 55.0%
! CGCGGAAGCTTCATTTTCCC+AGG + chr7_1:12463266-12463285 Msa1009980:CDS 55.0%
GTGGGAATGATTGAGCGCCT+GGG - chr7_1:12463286-12463305 None:intergenic 55.0%
TGTGGGAATGATTGAGCGCC+TGG - chr7_1:12463287-12463306 None:intergenic 55.0%
! CCCACATCGTAGCTTTTCCG+AGG + chr7_1:12463301-12463320 Msa1009980:CDS 55.0%
CCGTTCATTGAGTACCCGCA+AGG - chr7_1:12463614-12463633 None:intergenic 55.0%
ACCCATCTTCAGGGGTGACA+TGG - chr7_1:12463664-12463683 None:intergenic 55.0%
CTGGAGTGAGGATGAGAACG+AGG + chr7_1:12463964-12463983 Msa1009980:CDS 55.0%
GAGTGAGGATGAGAACGAGG+AGG + chr7_1:12463967-12463986 Msa1009980:CDS 55.0%
CCTTAACGGGGACCTTGCTG+AGG - chr7_1:12458867-12458886 None:intergenic 60.0%
CCTCAGCAAGGTCCCCGTTA+AGG + chr7_1:12458864-12458883 Msa1009980:intron 60.0%
! CTGATTTCCCTTGGCGGACG+TGG + chr7_1:12459652-12459671 Msa1009980:intron 60.0%
CTGAACACCACGTCCGCCAA+GGG - chr7_1:12459662-12459681 None:intergenic 60.0%
TGGCGGAGTCCTTCATGGGT+TGG + chr7_1:12459769-12459788 Msa1009980:intron 60.0%
GGCGGAGTCCTTCATGGGTT+GGG + chr7_1:12459770-12459789 Msa1009980:intron 60.0%
! GCGGAGTCCTTCATGGGTTG+GGG + chr7_1:12459771-12459790 Msa1009980:intron 60.0%
!! CGGAGTCCTTCATGGGTTGG+GGG + chr7_1:12459772-12459791 Msa1009980:intron 60.0%
!! AGTCCTTCATGGGTTGGGGG+TGG + chr7_1:12459775-12459794 Msa1009980:intron 60.0%
!! GTCCTTCATGGGTTGGGGGT+GGG + chr7_1:12459776-12459795 Msa1009980:intron 60.0%
AAGAAAGGCGGCGCCCTAAG+AGG + chr7_1:12460882-12460901 Msa1009980:intron 60.0%
AGAAAGGCGGCGCCCTAAGA+GGG + chr7_1:12460883-12460902 Msa1009980:intron 60.0%
CAGAAGGGCTCCTGAGGACT+AGG - chr7_1:12460914-12460933 None:intergenic 60.0%
CTAGTCCTCAGGAGCCCTTC+TGG + chr7_1:12460912-12460931 Msa1009980:intron 60.0%
GGCTCAGACGTCCTCCAGAA+GGG - chr7_1:12460929-12460948 None:intergenic 60.0%
AGGCTCAGACGTCCTCCAGA+AGG - chr7_1:12460930-12460949 None:intergenic 60.0%
CGTGCCACGCCGTGAAGAAA+TGG + chr7_1:12461324-12461343 Msa1009980:intron 60.0%
CAATGCTCGGAGGCCTAGTC+CGG - chr7_1:12463018-12463037 None:intergenic 60.0%
CCTGAACACCACGTCCGCCA+AGG - chr7_1:12459663-12459682 None:intergenic 65.0%
! CCTTGGCGGACGTGGTGTTC+AGG + chr7_1:12459660-12459679 Msa1009980:intron 65.0%
GAAAGGCGGCGCCCTAAGAG+GGG + chr7_1:12460884-12460903 Msa1009980:intron 65.0%
GACTAGGCGCGCCCCTCTTA+GGG - chr7_1:12460898-12460917 None:intergenic 65.0%
GTCCTCAGGAGCCCTTCTGG+AGG + chr7_1:12460915-12460934 Msa1009980:intron 65.0%
GTCCTCCAGAAGGGCTCCTG+AGG - chr7_1:12460920-12460939 None:intergenic 65.0%
GGCCCACCCCCAACCCATGA+AGG - chr7_1:12459781-12459800 None:intergenic 70.0%
GGACTAGGCGCGCCCCTCTT+AGG - chr7_1:12460899-12460918 None:intergenic 70.0%
! GAGGGGCGCGCCTAGTCCTC+AGG + chr7_1:12460901-12460920 Msa1009980:intron 75.0%
GCTCGGAGGCCTAGTCCGGC+AGG - chr7_1:12463014-12463033 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 12458041 12464006 12458041 ID=Msa1009980;Name=Msa1009980
chr7_1 mRNA 12458041 12464006 12458041 ID=Msa1009980-mRNA-1;Parent=Msa1009980;Name=Msa1009980-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0.33|0.66|1|1|3|0|415
chr7_1 exon 12458041 12458047 12458041 ID=Msa1009980-mRNA-1:exon:3215;Parent=Msa1009980-mRNA-1
chr7_1 exon 12462479 12462636 12462479 ID=Msa1009980-mRNA-1:exon:3216;Parent=Msa1009980-mRNA-1
chr7_1 exon 12462924 12464006 12462924 ID=Msa1009980-mRNA-1:exon:3217;Parent=Msa1009980-mRNA-1
chr7_1 CDS 12458041 12458047 12458041 ID=Msa1009980-mRNA-1:cds;Parent=Msa1009980-mRNA-1
chr7_1 CDS 12462479 12462636 12462479 ID=Msa1009980-mRNA-1:cds;Parent=Msa1009980-mRNA-1
chr7_1 CDS 12462924 12464006 12462924 ID=Msa1009980-mRNA-1:cds;Parent=Msa1009980-mRNA-1
Gene Sequence

>Msa1009980

ATGGGTGAAAGGTGTGTGAATGAACTAATGGAGTCAAAAGGTGGTAAGAAGAAGTCTAGCAGTAGTAGTTCCTCCTTTTTGTACGAAGCTCCTCTCGGTTACATCATTGAAGACGTTCGACCTAACGGTGGAGTAGAAAAATTCAAATCACCTGATTACTCAAACATGGCCATGACAAACTCAGCTATCGGTTTTGAAGGCTATGAAAAGAGGCTTGAGATGACTTTTTTTGAAAATGGTGTTTTCTCTGATCCTGCCGGACTAGGCCTCCGAGCATTGTCCAAAGACCAAATTGATGAGATTCTGAAACCAGCAGAATGCACTATTGTGGACTCACTATCTAATGATTATGTTGATTCGTATGTTCTTTCGGAGTCAAGCTTATTCATCTATGCTTACAAGCTTATCATCAAAACCTGTGGGACTACGAAATTGCTTCTGTCTATCCCTGCAATTCTTAAGCTTGCCGATGGTCTTAAAATAGCTGTGAAATCAGTGAGATACACTCGCGGAAGCTTCATTTTCCCAGGCGCTCAATCATTCCCACATCGTAGCTTTTCCGAGGAAGTTGCTGTCCTTGACAGCTATTTTGGCAAACTAGGTTCTGGTAGCCAAGCTTATATGATGGGTGATGCTGATAAGTCACAAATTTGGCACATTTACTCTGCTAGTGCTAAGCTAGAAGCTTCACCGAAAGCTGTCTATGGCCTTGAAATGTGCATGACTGATCTAGATAAAGAAAAGGCATCGGTCTTTTTCAAGACAGATAAATCTTCTGCAGCTTCGATGACTAAGAATTCTGGAATCAGGAAGGTCCTACCAAAATCCGACATATGTGACTTTGAATTTGAACCTTGCGGGTACTCAATGAACGGAATTGAGGGAAGTGCAATATCCACTATCCATGTCACCCCTGAAGATGGGTTCAGCTATGCAAGCTTTGAAGCACTGGGTTATGACTATGACGAGAAATCTCTGAATGAACTTGTTGGAAGGGTTTTAGCATGTTTCTATCCAGCTGAGTTTTCTGTTGCATTGCACATTGATGCAAATGGTGAAAAACTTGACAAATTTCCTTTGGAGGTTAAAGGATACAAATGTGGTGAGAGGATCAATGAAGTGCTTGGAGAAGATGGTGCAGTTGTGTACCGTACCTTTGTTCGAAATGATGGCTGCTCATCTCCAAGGTCTACTCTGAAATGTTGCTGGAGTGAGGATGAGAACGAGGAGGAAGTGAAGGAGATATAG

Protein sequence

>Msa1009980

MGERCVNELMESKGGKKKSSSSSSSFLYEAPLGYIIEDVRPNGGVEKFKSPDYSNMAMTNSAIGFEGYEKRLEMTFFENGVFSDPAGLGLRALSKDQIDEILKPAECTIVDSLSNDYVDSYVLSESSLFIYAYKLIIKTCGTTKLLLSIPAILKLADGLKIAVKSVRYTRGSFIFPGAQSFPHRSFSEEVAVLDSYFGKLGSGSQAYMMGDADKSQIWHIYSASAKLEASPKAVYGLEMCMTDLDKEKASVFFKTDKSSAASMTKNSGIRKVLPKSDICDFEFEPCGYSMNGIEGSAISTIHVTPEDGFSYASFEALGYDYDEKSLNELVGRVLACFYPAEFSVALHIDANGEKLDKFPLEVKGYKCGERINEVLGEDGAVVYRTFVRNDGCSSPRSTLKCCWSEDENEEEVKEI*