Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009980 | KEH17677.1 | 95.251 | 379 | 18 | 0 | 26 | 404 | 17 | 395 | 0.0 | 747 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009980 | sp|Q96471|DCAM_IPONI | 69.722 | 360 | 108 | 1 | 56 | 414 | 1 | 360 | 0.0 | 522 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009980 | A0A072TJR3 | 95.251 | 379 | 18 | 0 | 26 | 404 | 17 | 395 | 0.0 | 747 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1009970 | Msa1009980 | 0.833805 | 4.318778e-56 | -8.615850e-47 |
Msa1009980 | Msa1051490 | 0.801989 | 6.939941e-49 | -8.615850e-47 |
Msa1009980 | Msa1097650 | 0.815077 | 1.111830e-51 | -8.615850e-47 |
Msa1009980 | Msa1097690 | 0.880235 | 6.487886e-70 | -8.615850e-47 |
Msa1009980 | Msa1097700 | 0.851873 | 6.681380e-61 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009980 | MtrunA17_Chr4g0020181 | 94.842 | 349 | 18 | 0 | 56 | 404 | 1 | 349 | 0.0 | 684 |
Msa1009980 | MtrunA17_Chr7g0220841 | 94.269 | 349 | 20 | 0 | 56 | 404 | 1 | 349 | 0.0 | 683 |
Msa1009980 | MtrunA17_Chr7g0220781 | 94.269 | 349 | 20 | 0 | 56 | 404 | 1 | 349 | 0.0 | 678 |
Msa1009980 | MtrunA17_Chr4g0021521 | 69.014 | 355 | 107 | 3 | 58 | 411 | 1 | 353 | 8.64e-176 | 494 |
Msa1009980 | MtrunA17_Chr8g0368661 | 63.533 | 351 | 126 | 2 | 56 | 405 | 1 | 350 | 1.07e-159 | 454 |
Msa1009980 | MtrunA17_Chr7g0220811 | 94.709 | 189 | 10 | 0 | 56 | 244 | 1 | 189 | 2.07e-126 | 363 |
Msa1009980 | MtrunA17_Chr7g0220821 | 93.662 | 142 | 9 | 0 | 263 | 404 | 1 | 142 | 3.08e-97 | 287 |
Msa1009980 | MtrunA17_Chr2g0286961 | 42.982 | 342 | 173 | 8 | 64 | 387 | 5 | 342 | 4.16e-82 | 256 |
Msa1009980 | MtrunA17_Chr4g0066361 | 41.056 | 341 | 177 | 7 | 64 | 386 | 5 | 339 | 1.06e-79 | 249 |
Msa1009980 | MtrunA17_Chr7g0220831 | 97.826 | 46 | 1 | 0 | 10 | 55 | 1 | 46 | 3.23e-14 | 66.6 |
Msa1009980 | MtrunA17_Chr4g0020171 | 97.826 | 46 | 1 | 0 | 10 | 55 | 1 | 46 | 3.23e-14 | 66.6 |
Msa1009980 | MtrunA17_Chr7g0220791 | 97.826 | 46 | 1 | 0 | 10 | 55 | 1 | 46 | 4.18e-13 | 63.5 |
Msa1009980 | MtrunA17_Chr7g0220801 | 97.826 | 46 | 1 | 0 | 10 | 55 | 1 | 46 | 4.18e-13 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1009980 | AT3G02470.4 | 63.215 | 367 | 122 | 6 | 58 | 412 | 1 | 366 | 1.79e-160 | 456 |
Msa1009980 | AT3G02470.1 | 63.215 | 367 | 122 | 6 | 58 | 412 | 1 | 366 | 1.79e-160 | 456 |
Msa1009980 | AT3G02470.3 | 63.215 | 367 | 122 | 6 | 58 | 412 | 1 | 366 | 1.79e-160 | 456 |
Msa1009980 | AT5G15950.2 | 63.536 | 362 | 127 | 4 | 58 | 414 | 1 | 362 | 1.05e-157 | 449 |
Msa1009980 | AT5G15950.1 | 63.536 | 362 | 127 | 4 | 58 | 414 | 1 | 362 | 1.05e-157 | 449 |
Msa1009980 | AT3G25570.2 | 65.043 | 349 | 118 | 3 | 58 | 402 | 1 | 349 | 8.34e-157 | 446 |
Msa1009980 | AT3G25570.1 | 65.043 | 349 | 118 | 3 | 58 | 402 | 1 | 349 | 8.34e-157 | 446 |
Msa1009980 | AT5G18930.1 | 41.765 | 340 | 181 | 6 | 64 | 387 | 5 | 343 | 2.03e-84 | 262 |
Msa1009980 | AT3G17717.1 | 49.573 | 117 | 55 | 3 | 232 | 346 | 13 | 127 | 1.69e-31 | 117 |
Find 87 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATCTCATCAATTTGGTCTT+TGG | 0.217491 | 7_1:-12463039 | None:intergenic |
AAATTTCCTTTGGAGGTTAA+AGG | 0.271383 | 7_1:+12463827 | Msa1009980:CDS |
GTTTCAGAATCTCATCAATT+TGG | 0.271425 | 7_1:-12463046 | None:intergenic |
AAGTCACATATGTCGGATTT+TGG | 0.276673 | 7_1:-12463578 | None:intergenic |
GCTGTCCTTGACAGCTATTT+TGG | 0.280170 | 7_1:+12463329 | Msa1009980:CDS |
GCATAGCTGAACCCATCTTC+AGG | 0.344043 | 7_1:-12463671 | None:intergenic |
GCTTCGATGACTAAGAATTC+TGG | 0.345633 | 7_1:+12463539 | Msa1009980:CDS |
TGTTGATTCGTATGTTCTTT+CGG | 0.354000 | 7_1:+12463109 | Msa1009980:CDS |
ATGCTGATAAGTCACAAATT+TGG | 0.357352 | 7_1:+12463390 | Msa1009980:CDS |
AAAACTTGACAAATTTCCTT+TGG | 0.369192 | 7_1:+12463817 | Msa1009980:CDS |
GAAATTACGTTTGAGTAATC+AGG | 0.375087 | 7_1:-12462622 | None:intergenic |
TCAAGGCCATAGACAGCTTT+CGG | 0.378206 | 7_1:-12463449 | None:intergenic |
GCTTCACCGAAAGCTGTCTA+TGG | 0.385704 | 7_1:+12463443 | Msa1009980:CDS |
GAGAGGAGCTTCGTACAAAA+AGG | 0.388362 | 7_1:-12462545 | None:intergenic |
TTCTCTGATCCTGCCGGACT+AGG | 0.400283 | 7_1:+12463002 | Msa1009980:CDS |
TCGGCAAGCTTAAGAATTGC+AGG | 0.407592 | 7_1:-12463206 | None:intergenic |
GGTCTACTCTGAAATGTTGC+TGG | 0.418240 | 7_1:+12463945 | Msa1009980:CDS |
CGTACCTTTGTTCGAAATGA+TGG | 0.419044 | 7_1:+12463908 | Msa1009980:CDS |
GATCAGTCATGCACATTTCA+AGG | 0.421506 | 7_1:-12463466 | None:intergenic |
CTATGCAAGCTTTGAAGCAC+TGG | 0.422653 | 7_1:+12463688 | Msa1009980:CDS |
TGACTAAGAATTCTGGAATC+AGG | 0.429339 | 7_1:+12463546 | Msa1009980:CDS |
AAATCTCTGAATGAACTTGT+TGG | 0.430429 | 7_1:+12463728 | Msa1009980:CDS |
ATCCATGTCACCCCTGAAGA+TGG | 0.438146 | 7_1:+12463659 | Msa1009980:CDS |
ACTTTGAATTTGAACCTTGC+GGG | 0.440779 | 7_1:+12463597 | Msa1009980:CDS |
CAATGCTCGGAGGCCTAGTC+CGG | 0.441585 | 7_1:-12463015 | None:intergenic |
ACTTGACAAATTTCCTTTGG+AGG | 0.442578 | 7_1:+12463820 | Msa1009980:CDS |
TGTGGGAATGATTGAGCGCC+TGG | 0.446118 | 7_1:-12463284 | None:intergenic |
TTCAGGGGTGACATGGATAG+TGG | 0.468582 | 7_1:-12463654 | None:intergenic |
TTTGGTCTTTGGACAATGCT+CGG | 0.490726 | 7_1:-12463028 | None:intergenic |
CTCTGAATGAACTTGTTGGA+AGG | 0.494644 | 7_1:+12463732 | Msa1009980:CDS |
TGAGAACGAGGAGGAAGTGA+AGG | 0.496603 | 7_1:+12463976 | Msa1009980:CDS |
TCTGAATGAACTTGTTGGAA+GGG | 0.497768 | 7_1:+12463733 | Msa1009980:CDS |
TACTCAATGAACGGAATTGA+GGG | 0.499113 | 7_1:+12463620 | Msa1009980:CDS |
TTGTATCCTTTAACCTCCAA+AGG | 0.501527 | 7_1:-12463833 | None:intergenic |
CATAGCTGAACCCATCTTCA+GGG | 0.502056 | 7_1:-12463670 | None:intergenic |
GCTCGGAGGCCTAGTCCGGC+AGG | 0.509324 | 7_1:-12463011 | None:intergenic |
TCCATGTCACCCCTGAAGAT+GGG | 0.515044 | 7_1:+12463660 | Msa1009980:CDS |
TCCACAATAGTGCATTCTGC+TGG | 0.520646 | 7_1:-12463068 | None:intergenic |
AAGGTGTGTGAATGAACTAA+TGG | 0.520867 | 7_1:+12462480 | Msa1009980:CDS |
TGGTAGCCAAGCTTATATGA+TGG | 0.524204 | 7_1:+12463364 | Msa1009980:CDS |
GACTGATCTAGATAAAGAAA+AGG | 0.524898 | 7_1:+12463481 | Msa1009980:CDS |
GTACTCAATGAACGGAATTG+AGG | 0.525785 | 7_1:+12463619 | Msa1009980:CDS |
AATGAAGTGCTTGGAGAAGA+TGG | 0.529682 | 7_1:+12463872 | Msa1009980:CDS |
ACCCATCTTCAGGGGTGACA+TGG | 0.530956 | 7_1:-12463661 | None:intergenic |
AAATTCAAAGTCACATATGT+CGG | 0.533465 | 7_1:-12463585 | None:intergenic |
ATTGAAGACGTTCGACCTAA+CGG | 0.537316 | 7_1:+12462577 | Msa1009980:CDS |
AAGCAATTTCGTAGTCCCAC+AGG | 0.538583 | 7_1:-12463174 | None:intergenic |
GTCAAGGACAGCAACTTCCT+CGG | 0.543159 | 7_1:-12463318 | None:intergenic |
GTTTGCCAAAATAGCTGTCA+AGG | 0.560516 | 7_1:-12463334 | None:intergenic |
CATCACCCATCATATAAGCT+TGG | 0.565152 | 7_1:-12463370 | None:intergenic |
GAGAGGATCAATGAAGTGCT+TGG | 0.566102 | 7_1:+12463863 | Msa1009980:CDS |
GAGGTTAAAGGATACAAATG+TGG | 0.569810 | 7_1:+12463839 | Msa1009980:CDS |
AGCTTATCATCAAAACCTGT+GGG | 0.576476 | 7_1:+12463159 | Msa1009980:CDS |
CAACATTTCAGAGTAGACCT+TGG | 0.577948 | 7_1:-12463941 | None:intergenic |
GGTAGCCAAGCTTATATGAT+GGG | 0.582473 | 7_1:+12463365 | Msa1009980:CDS |
AATGAACTAATGGAGTCAAA+AGG | 0.584923 | 7_1:+12462490 | Msa1009980:CDS |
TTACGATGTGAGGAGATGGG+TGG | 0.587539 | 7_1:+12458026 | None:intergenic |
GCATTGCACATTGATGCAAA+TGG | 0.589627 | 7_1:+12463791 | Msa1009980:CDS |
GCAATTCTTAAGCTTGCCGA+TGG | 0.593187 | 7_1:+12463209 | Msa1009980:CDS |
ATGATGGCTGCTCATCTCCA+AGG | 0.593841 | 7_1:+12463924 | Msa1009980:CDS |
GCCATGACAAACTCAGCTAT+CGG | 0.597878 | 7_1:+12462927 | Msa1009980:CDS |
TCCTCGGAAAAGCTACGATG+TGG | 0.600474 | 7_1:-12463302 | None:intergenic |
ACCAGCAGAATGCACTATTG+TGG | 0.601679 | 7_1:+12463067 | Msa1009980:CDS |
ACCGATAGCTGAGTTTGTCA+TGG | 0.606711 | 7_1:-12462928 | None:intergenic |
AATGCAACAGAAAACTCAGC+TGG | 0.608895 | 7_1:-12463773 | None:intergenic |
AAGCTTATCATCAAAACCTG+TGG | 0.612735 | 7_1:+12463158 | Msa1009980:CDS |
CCGTTCATTGAGTACCCGCA+AGG | 0.620321 | 7_1:-12463611 | None:intergenic |
TATGCAAGCTTTGAAGCACT+GGG | 0.621752 | 7_1:+12463689 | Msa1009980:CDS |
AAGGATACAAATGTGGTGAG+AGG | 0.622973 | 7_1:+12463846 | Msa1009980:CDS |
TCTAGATAAAGAAAAGGCAT+CGG | 0.625471 | 7_1:+12463487 | Msa1009980:CDS |
GTGGGAATGATTGAGCGCCT+GGG | 0.635756 | 7_1:-12463283 | None:intergenic |
CCTTGCGGGTACTCAATGAA+CGG | 0.636080 | 7_1:+12463611 | Msa1009980:CDS |
CCTCGGAAAAGCTACGATGT+GGG | 0.640742 | 7_1:-12463301 | None:intergenic |
GAACTAATGGAGTCAAAAGG+TGG | 0.643029 | 7_1:+12462493 | Msa1009980:CDS |
CGGCAAGCTTAAGAATTGCA+GGG | 0.643796 | 7_1:-12463205 | None:intergenic |
TAAGAATTCTGGAATCAGGA+AGG | 0.646169 | 7_1:+12463550 | Msa1009980:CDS |
CTGGAGTGAGGATGAGAACG+AGG | 0.648538 | 7_1:+12463964 | Msa1009980:CDS |
TCTGAAATGTTGCTGGAGTG+AGG | 0.649297 | 7_1:+12463952 | Msa1009980:CDS |
GCAGCCATCATTTCGAACAA+AGG | 0.652571 | 7_1:-12463912 | None:intergenic |
CATCATTTCGAACAAAGGTA+CGG | 0.654774 | 7_1:-12463907 | None:intergenic |
GACTTTGAATTTGAACCTTG+CGG | 0.658489 | 7_1:+12463596 | Msa1009980:CDS |
GGTCTTTGGACAATGCTCGG+AGG | 0.663736 | 7_1:-12463025 | None:intergenic |
ATAGCTGAACCCATCTTCAG+GGG | 0.696514 | 7_1:-12463669 | None:intergenic |
GAGTGAGGATGAGAACGAGG+AGG | 0.703166 | 7_1:+12463967 | Msa1009980:CDS |
GAAGACGTTCGACCTAACGG+TGG | 0.747756 | 7_1:+12462580 | Msa1009980:CDS |
AAATCAGTGAGATACACTCG+CGG | 0.751449 | 7_1:+12463248 | Msa1009980:CDS |
TCTTCAATGATGTAACCGAG+AGG | 0.771142 | 7_1:-12462562 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATACAAATATCATTAT+TGG | - | chr7_1:12458265-12458284 | None:intergenic | 10.0% |
!!! | TTTTTAATTATGTCAAATAT+TGG | + | chr7_1:12459319-12459338 | Msa1009980:intron | 10.0% |
!!! | CATATGATTTTTTATTTTTT+CGG | - | chr7_1:12459942-12459961 | None:intergenic | 10.0% |
!!! | ATATACTATATTTATTTTAG+TGG | + | chr7_1:12460301-12460320 | Msa1009980:intron | 10.0% |
!!! | ACATATATAATTTTTTTTTG+AGG | + | chr7_1:12461112-12461131 | Msa1009980:intron | 10.0% |
!!! | TTTTTTATTTTGTTTGATTT+AGG | + | chr7_1:12461644-12461663 | Msa1009980:intron | 10.0% |
!!! | ATTTTAAAACAAAAGAAAAA+TGG | - | chr7_1:12461954-12461973 | None:intergenic | 10.0% |
!! | ATAAAGTTAAAATTAATCAA+AGG | - | chr7_1:12462665-12462684 | None:intergenic | 10.0% |
!! | AAAAGATACCAAAAATATAA+GGG | - | chr7_1:12458091-12458110 | None:intergenic | 15.0% |
!!! | ATGAATTTTTACTTTTATGA+TGG | - | chr7_1:12459013-12459032 | None:intergenic | 15.0% |
!!! | AACAATTTTTCAATAGTTTT+AGG | + | chr7_1:12459982-12460001 | Msa1009980:intron | 15.0% |
!! | TTTATAGACTTTATAATTTG+CGG | + | chr7_1:12460070-12460089 | Msa1009980:intron | 15.0% |
!!! | TTTTTCTATTTCATGTTTAA+TGG | + | chr7_1:12460544-12460563 | Msa1009980:intron | 15.0% |
!!! | ATCATGTATCTATTTTTTTT+TGG | + | chr7_1:12460999-12461018 | Msa1009980:intron | 15.0% |
!!! | TCATGTATCTATTTTTTTTT+GGG | + | chr7_1:12461000-12461019 | Msa1009980:intron | 15.0% |
!! | TTGAAAAAAAAAAACACATA+AGG | - | chr7_1:12461583-12461602 | None:intergenic | 15.0% |
!!! | ATGTGTTTTTTTTTTTCAAT+TGG | + | chr7_1:12461584-12461603 | Msa1009980:intron | 15.0% |
!! | TAACTTTATAGTTATAAGAT+TGG | + | chr7_1:12462676-12462695 | Msa1009980:intron | 15.0% |
!!! | CAATAATACCCTTATATTTT+TGG | + | chr7_1:12458080-12458099 | Msa1009980:intron | 20.0% |
!! | CAAAAGATACCAAAAATATA+AGG | - | chr7_1:12458092-12458111 | None:intergenic | 20.0% |
!! | AACAATGCATAATATATGTA+AGG | + | chr7_1:12458343-12458362 | Msa1009980:intron | 20.0% |
!! | TGAAGACAAGTTTATAATAT+TGG | - | chr7_1:12458614-12458633 | None:intergenic | 20.0% |
!!! | CTTGTTATTGATAGTTTTTT+AGG | - | chr7_1:12458821-12458840 | None:intergenic | 20.0% |
!! | ATTGAATAATTAACGTACTT+GGG | - | chr7_1:12459077-12459096 | None:intergenic | 20.0% |
!!! | TTTTTGCTTATAATAGTGAT+TGG | + | chr7_1:12459113-12459132 | Msa1009980:intron | 20.0% |
!!! | GTTTCCAAAATTAACAATTT+TGG | - | chr7_1:12459438-12459457 | None:intergenic | 20.0% |
!!! | TTGTCTTTTGATTACTATTT+TGG | - | chr7_1:12459487-12459506 | None:intergenic | 20.0% |
!!! | TTGTTTAAAATCTTGCAAAA+TGG | - | chr7_1:12459858-12459877 | None:intergenic | 20.0% |
!!! | TTTGCAATAGTTTTAGTTTT+CGG | + | chr7_1:12459879-12459898 | Msa1009980:intron | 20.0% |
!! | TGTTTAAAAATCTCACAAAA+TGG | - | chr7_1:12459966-12459985 | None:intergenic | 20.0% |
!!! | TTATAGACTTTATAATTTGC+GGG | + | chr7_1:12460071-12460090 | Msa1009980:intron | 20.0% |
!!! | TTTTTCATAAACATATCAGA+GGG | - | chr7_1:12460631-12460650 | None:intergenic | 20.0% |
!! | ATTGTACTTGCAAAAAAATA+CGG | + | chr7_1:12460692-12460711 | Msa1009980:intron | 20.0% |
!! | AGGTTATAAATATCATCATT+GGG | - | chr7_1:12460786-12460805 | None:intergenic | 20.0% |
!!! | TTGTAAATTGAATTTTTGAC+TGG | - | chr7_1:12461262-12461281 | None:intergenic | 20.0% |
!!! | TAAGGTTTAAGATATGATAT+TGG | - | chr7_1:12461459-12461478 | None:intergenic | 20.0% |
!!! | TAATAATTGGAATTGGTTTA+AGG | - | chr7_1:12461477-12461496 | None:intergenic | 20.0% |
!! | GAGAAAATAATAATTGGAAT+TGG | - | chr7_1:12461484-12461503 | None:intergenic | 20.0% |
!! | TCAAAATTCTGATTCATAAA+AGG | + | chr7_1:12461674-12461693 | Msa1009980:intron | 20.0% |
!! | CAAAATTCTGATTCATAAAA+GGG | + | chr7_1:12461675-12461694 | Msa1009980:intron | 20.0% |
!! | AAAATTCTGATTCATAAAAG+GGG | + | chr7_1:12461676-12461695 | Msa1009980:intron | 20.0% |
!!! | CATGTTTCTCAATTTTTTTA+TGG | + | chr7_1:12462014-12462033 | Msa1009980:intron | 20.0% |
!! | TTGTTAATAATGTTGTATTC+TGG | + | chr7_1:12462089-12462108 | Msa1009980:intron | 20.0% |
!! | TGTTAATAATGTTGTATTCT+GGG | + | chr7_1:12462090-12462109 | Msa1009980:intron | 20.0% |
!! | CTTAACAAAAGTTAAGAAAT+TGG | + | chr7_1:12462180-12462199 | Msa1009980:intron | 20.0% |
!! | TGAAATCAACAAGAAAAATT+TGG | - | chr7_1:12462266-12462285 | None:intergenic | 20.0% |
!!! | CATATTTCTGGATTATTTTT+TGG | - | chr7_1:12462399-12462418 | None:intergenic | 20.0% |
!! | AAAATGTCAATCACAAATAT+AGG | - | chr7_1:12462441-12462460 | None:intergenic | 20.0% |
!! | AAAGGAATTGAAATTGAATT+GGG | - | chr7_1:12462647-12462666 | None:intergenic | 20.0% |
!! | CTGCATAATAAAGAAAAAAA+AGG | - | chr7_1:12462726-12462745 | None:intergenic | 20.0% |
! | AGATTCTATACCAAATTTGT+AGG | - | chr7_1:12458147-12458166 | None:intergenic | 25.0% |
!!! | TGTCATCTCATTTTTTTTTG+TGG | - | chr7_1:12458391-12458410 | None:intergenic | 25.0% |
! | AAAAAAAAATGAGATGACAC+TGG | + | chr7_1:12458392-12458411 | Msa1009980:intron | 25.0% |
! | TACATATGAGTTTACCTAAA+AGG | + | chr7_1:12458659-12458678 | Msa1009980:intron | 25.0% |
! | TGAAGATTAAAAACCTTTGA+GGG | + | chr7_1:12458718-12458737 | Msa1009980:intron | 25.0% |
! | AAGTTGAAGAAAAAATCTAG+AGG | + | chr7_1:12458746-12458765 | Msa1009980:intron | 25.0% |
! | AGTTGAAGAAAAAATCTAGA+GGG | + | chr7_1:12458747-12458766 | Msa1009980:intron | 25.0% |
! | TCAATAACAAGATAAGTATG+TGG | + | chr7_1:12458830-12458849 | Msa1009980:intron | 25.0% |
! | TTAATTAAGCATTCCTTGAA+TGG | - | chr7_1:12458971-12458990 | None:intergenic | 25.0% |
! | GATTCATTGAATAATGTATC+TGG | + | chr7_1:12459039-12459058 | Msa1009980:intron | 25.0% |
! | CATTGAATAATTAACGTACT+TGG | - | chr7_1:12459078-12459097 | None:intergenic | 25.0% |
!! | ATTATGTCAAATATTGGTTG+TGG | + | chr7_1:12459325-12459344 | Msa1009980:intron | 25.0% |
!! | GTTTGAAAATCACACTTTTA+AGG | - | chr7_1:12459409-12459428 | None:intergenic | 25.0% |
!!! | TTAATTTTGGAAACTCTGAA+GGG | + | chr7_1:12459444-12459463 | Msa1009980:intron | 25.0% |
! | TTAGACATGATTATTCATTC+CGG | + | chr7_1:12459550-12459569 | Msa1009980:intron | 25.0% |
! | TTAATATTAGCAATTGTGCT+CGG | + | chr7_1:12459595-12459614 | Msa1009980:intron | 25.0% |
! | GATTGACAGTAATAATGTAA+TGG | - | chr7_1:12459691-12459710 | None:intergenic | 25.0% |
! | TGATAACTATTCTTAATCAG+TGG | + | chr7_1:12459749-12459768 | Msa1009980:intron | 25.0% |
! | GTAATAATGTAATGACGATA+TGG | - | chr7_1:12459818-12459837 | None:intergenic | 25.0% |
! | AAAATCTTGCAAAATGGATA+TGG | - | chr7_1:12459852-12459871 | None:intergenic | 25.0% |
!!! | TCAATAGTTTTAGGTTTTAG+TGG | + | chr7_1:12459991-12460010 | Msa1009980:intron | 25.0% |
!! | AAAATCACGTATGTCAATTT+TGG | - | chr7_1:12460019-12460038 | None:intergenic | 25.0% |
!! | GATTTTTGTCATCTTAAACT+TGG | + | chr7_1:12460033-12460052 | Msa1009980:intron | 25.0% |
!! | TATAGACTTTATAATTTGCG+GGG | + | chr7_1:12460072-12460091 | Msa1009980:intron | 25.0% |
! | TTGATAGAACAATATAATGG+AGG | - | chr7_1:12460106-12460125 | None:intergenic | 25.0% |
!!! | CAGTTGATAGAACAATATAA+TGG | - | chr7_1:12460109-12460128 | None:intergenic | 25.0% |
!!! | ATTTATTTTAGTGGTCCATT+TGG | + | chr7_1:12460310-12460329 | Msa1009980:intron | 25.0% |
! | GTCAGAAAAAAAAATCCAAA+TGG | - | chr7_1:12460328-12460347 | None:intergenic | 25.0% |
! | CTCACATTGATCAATAATAA+CGG | - | chr7_1:12460358-12460377 | None:intergenic | 25.0% |
!!! | CTTTTTCATAAACATATCAG+AGG | - | chr7_1:12460632-12460651 | None:intergenic | 25.0% |
! | AAAATACGGTAAAGAATACT+AGG | + | chr7_1:12460706-12460725 | Msa1009980:intron | 25.0% |
! | AAATACGGTAAAGAATACTA+GGG | + | chr7_1:12460707-12460726 | Msa1009980:intron | 25.0% |
! | GAGGTTATAAATATCATCAT+TGG | - | chr7_1:12460787-12460806 | None:intergenic | 25.0% |
! | AAGTTCTATACCAAATTTGA+AGG | + | chr7_1:12461291-12461310 | Msa1009980:intron | 25.0% |
! | AGTTCTATACCAAATTTGAA+GGG | + | chr7_1:12461292-12461311 | Msa1009980:intron | 25.0% |
!! | AAAATGATACGAAAAGCATA+AGG | + | chr7_1:12461368-12461387 | Msa1009980:intron | 25.0% |
!! | AAATGATACGAAAAGCATAA+GGG | + | chr7_1:12461369-12461388 | Msa1009980:intron | 25.0% |
! | GTTTATTTATATAGAGGCTT+AGG | - | chr7_1:12461416-12461435 | None:intergenic | 25.0% |
! | GGAGTAGTTTATTTATATAG+AGG | - | chr7_1:12461422-12461441 | None:intergenic | 25.0% |
! | CGAAGAGAGAAAATAATAAT+TGG | - | chr7_1:12461490-12461509 | None:intergenic | 25.0% |
! | TCTTAAACAACACAAACAAT+TGG | - | chr7_1:12462208-12462227 | None:intergenic | 25.0% |
!!! | GACATTTTGCTTTATTCTTT+TGG | + | chr7_1:12462453-12462472 | Msa1009980:intron | 25.0% |
! | CAAAGGAATTGAAATTGAAT+TGG | - | chr7_1:12462648-12462667 | None:intergenic | 25.0% |
!! | AGTTATAAGATTGGTTGATT+TGG | + | chr7_1:12462685-12462704 | Msa1009980:intron | 25.0% |
!!! | GAGATGACTTTTTTTGAAAA+TGG | + | chr7_1:12462975-12462994 | Msa1009980:CDS | 25.0% |
! | AAATTCAAAGTCACATATGT+CGG | - | chr7_1:12463588-12463607 | None:intergenic | 25.0% |
! | AAAACTTGACAAATTTCCTT+TGG | + | chr7_1:12463817-12463836 | Msa1009980:CDS | 25.0% |
ATACCAAATTTGTAGGAGAA+GGG | - | chr7_1:12458140-12458159 | None:intergenic | 30.0% | |
TATACCAAATTTGTAGGAGA+AGG | - | chr7_1:12458141-12458160 | None:intergenic | 30.0% | |
TGCATAATATATGTAAGGTC+TGG | + | chr7_1:12458348-12458367 | Msa1009980:intron | 30.0% | |
GCATAATATATGTAAGGTCT+GGG | + | chr7_1:12458349-12458368 | Msa1009980:intron | 30.0% | |
CATAATATATGTAAGGTCTG+GGG | + | chr7_1:12458350-12458369 | Msa1009980:intron | 30.0% | |
!!! | CATCTCATTTTTTTTTGTGG+TGG | - | chr7_1:12458388-12458407 | None:intergenic | 30.0% |
GTGAAGATTAAAAACCTTTG+AGG | + | chr7_1:12458717-12458736 | Msa1009980:intron | 30.0% | |
AAGATAAATAGTCCCCTTAA+CGG | - | chr7_1:12458881-12458900 | None:intergenic | 30.0% | |
TGCTTATAATAGTGATTGGA+CGG | + | chr7_1:12459117-12459136 | Msa1009980:intron | 30.0% | |
TTCTCATCAACTTATCAATC+TGG | + | chr7_1:12459153-12459172 | Msa1009980:intron | 30.0% | |
! | AAGTGTGATTTTCAAACTAG+TGG | + | chr7_1:12459412-12459431 | Msa1009980:intron | 30.0% |
! | GTGGCCAAAATTGTTAATTT+TGG | + | chr7_1:12459431-12459450 | Msa1009980:intron | 30.0% |
!! | GTTAATTTTGGAAACTCTGA+AGG | + | chr7_1:12459443-12459462 | Msa1009980:intron | 30.0% |
!! | TTTTGGCTAAAATGCACTTT+TGG | - | chr7_1:12459470-12459489 | None:intergenic | 30.0% |
CTAATATTAAGTACCTAGTC+GGG | - | chr7_1:12459585-12459604 | None:intergenic | 30.0% | |
GCTAATATTAAGTACCTAGT+CGG | - | chr7_1:12459586-12459605 | None:intergenic | 30.0% | |
TAATATTAGCAATTGTGCTC+GGG | + | chr7_1:12459596-12459615 | Msa1009980:intron | 30.0% | |
! | TTTATTTGGTGGAATTGTCA+GGG | - | chr7_1:12459631-12459650 | None:intergenic | 30.0% |
!! | TTTTATTTGGTGGAATTGTC+AGG | - | chr7_1:12459632-12459651 | None:intergenic | 30.0% |
!!! | CAAGGGAAATCAGTTTTATT+TGG | - | chr7_1:12459645-12459664 | None:intergenic | 30.0% |
! | CAAATAAAACTGATTTCCCT+TGG | + | chr7_1:12459643-12459662 | Msa1009980:intron | 30.0% |
TAACTATTCTTAATCAGTGG+CGG | + | chr7_1:12459752-12459771 | Msa1009980:intron | 30.0% | |
TCTTAAACTTGGTTGATTAG+CGG | + | chr7_1:12460044-12460063 | Msa1009980:intron | 30.0% | |
! | ATAGACTTTATAATTTGCGG+GGG | + | chr7_1:12460073-12460092 | Msa1009980:intron | 30.0% |
CTGAAAATGCCTACAATTTA+CGG | + | chr7_1:12460126-12460145 | Msa1009980:intron | 30.0% | |
CATTAAGTACAAAGTTGAAG+TGG | - | chr7_1:12460255-12460274 | None:intergenic | 30.0% | |
ACATTGATCAATAATAACGG+TGG | - | chr7_1:12460355-12460374 | None:intergenic | 30.0% | |
!! | GAGAATTTATTTTCTCGTGA+AGG | - | chr7_1:12460441-12460460 | None:intergenic | 30.0% |
AGAATATTGTGTGTGTGATT+GGG | - | chr7_1:12460498-12460517 | None:intergenic | 30.0% | |
TAGAATATTGTGTGTGTGAT+TGG | - | chr7_1:12460499-12460518 | None:intergenic | 30.0% | |
AGGGTTCAGTATAATAATCT+AGG | + | chr7_1:12460726-12460745 | Msa1009980:intron | 30.0% | |
GGGTTCAGTATAATAATCTA+GGG | + | chr7_1:12460727-12460746 | Msa1009980:intron | 30.0% | |
TGATATTTATAACCTCCTTG+TGG | + | chr7_1:12460791-12460810 | Msa1009980:intron | 30.0% | |
GATATTTATAACCTCCTTGT+GGG | + | chr7_1:12460792-12460811 | Msa1009980:intron | 30.0% | |
! | AGCCTTTAGGAATATTATGA+CGG | + | chr7_1:12460966-12460985 | Msa1009980:intron | 30.0% |
AACCGTCATAATATTCCTAA+AGG | - | chr7_1:12460971-12460990 | None:intergenic | 30.0% | |
TACTCACAGTTGTAAACAAT+TGG | - | chr7_1:12461726-12461745 | None:intergenic | 30.0% | |
TTAATGTTGTTGCTAGCATT+TGG | + | chr7_1:12461858-12461877 | Msa1009980:intron | 30.0% | |
AATGAACTAATGGAGTCAAA+AGG | + | chr7_1:12462490-12462509 | Msa1009980:CDS | 30.0% | |
GAAATTACGTTTGAGTAATC+AGG | - | chr7_1:12462625-12462644 | None:intergenic | 30.0% | |
!!! | AAACCATCCTGAGATTTTTT+GGG | + | chr7_1:12462755-12462774 | Msa1009980:intron | 30.0% |
! | TTTTCTCCTTTGATTCAAGA+TGG | + | chr7_1:12462905-12462924 | Msa1009980:intron | 30.0% |
GTTTCAGAATCTCATCAATT+TGG | - | chr7_1:12463049-12463068 | None:intergenic | 30.0% | |
!! | TGTTGATTCGTATGTTCTTT+CGG | + | chr7_1:12463109-12463128 | Msa1009980:CDS | 30.0% |
ATGCTGATAAGTCACAAATT+TGG | + | chr7_1:12463390-12463409 | Msa1009980:CDS | 30.0% | |
GACTGATCTAGATAAAGAAA+AGG | + | chr7_1:12463481-12463500 | Msa1009980:CDS | 30.0% | |
! | TCTAGATAAAGAAAAGGCAT+CGG | + | chr7_1:12463487-12463506 | Msa1009980:CDS | 30.0% |
AAATCTCTGAATGAACTTGT+TGG | + | chr7_1:12463728-12463747 | Msa1009980:CDS | 30.0% | |
! | AAATTTCCTTTGGAGGTTAA+AGG | + | chr7_1:12463827-12463846 | Msa1009980:CDS | 30.0% |
CATCTCATCTAAATGCTCTT+GGG | - | chr7_1:12458289-12458308 | None:intergenic | 35.0% | |
TCATCTCATCTAAATGCTCT+TGG | - | chr7_1:12458290-12458309 | None:intergenic | 35.0% | |
!!! | TCATTTTTTTTTGTGGTGGC+CGG | - | chr7_1:12458384-12458403 | None:intergenic | 35.0% |
TTAACGTTGTTGCATGTTCA+AGG | - | chr7_1:12458457-12458476 | None:intergenic | 35.0% | |
ACCGATCGTCAAAAAAAAAG+AGG | + | chr7_1:12458686-12458705 | Msa1009980:intron | 35.0% | |
!!! | CCCTCTTTTTTTTTGACGAT+CGG | - | chr7_1:12458690-12458709 | None:intergenic | 35.0% |
CCGATCGTCAAAAAAAAAGA+GGG | + | chr7_1:12458687-12458706 | Msa1009980:intron | 35.0% | |
! | TTCAACTTTTAGTCCCTCAA+AGG | - | chr7_1:12458734-12458753 | None:intergenic | 35.0% |
GAGGGACTAAAACAAAAAGT+TGG | + | chr7_1:12458765-12458784 | Msa1009980:intron | 35.0% | |
AGATAAATAGTCCCCTTAAC+GGG | - | chr7_1:12458880-12458899 | None:intergenic | 35.0% | |
! | TTATGTGCTCAACATTTTCC+CGG | + | chr7_1:12458899-12458918 | Msa1009980:intron | 35.0% |
!! | CTTTTATGATGGTGACAAGA+GGG | - | chr7_1:12459002-12459021 | None:intergenic | 35.0% |
!! | ACTTTTATGATGGTGACAAG+AGG | - | chr7_1:12459003-12459022 | None:intergenic | 35.0% |
TACGATCACCATGTACATTT+CGG | - | chr7_1:12459201-12459220 | None:intergenic | 35.0% | |
GATCGTAAAATCTTGTTACG+AGG | + | chr7_1:12459214-12459233 | Msa1009980:intron | 35.0% | |
ACGAGGTTAGATTCAAAGTA+AGG | + | chr7_1:12459231-12459250 | Msa1009980:intron | 35.0% | |
TTAGACCTACCAACAAAAAC+AGG | - | chr7_1:12459289-12459308 | None:intergenic | 35.0% | |
TGTGGAAGAAGTTGAAAGAT+TGG | + | chr7_1:12459343-12459362 | Msa1009980:intron | 35.0% | |
! | AAAATTTTCACTCGACCGTT+GGG | + | chr7_1:12459370-12459389 | Msa1009980:intron | 35.0% |
!!! | GGGAAATCAGTTTTATTTGG+TGG | - | chr7_1:12459642-12459661 | None:intergenic | 35.0% |
! | ATAAAACTGATTTCCCTTGG+CGG | + | chr7_1:12459646-12459665 | Msa1009980:intron | 35.0% |
ATCATTCAGACATTGCTATG+GGG | - | chr7_1:12459724-12459743 | None:intergenic | 35.0% | |
CATCATTCAGACATTGCTAT+GGG | - | chr7_1:12459725-12459744 | None:intergenic | 35.0% | |
AATGACGATATGGTTTGAGT+GGG | - | chr7_1:12459808-12459827 | None:intergenic | 35.0% | |
TAATGACGATATGGTTTGAG+TGG | - | chr7_1:12459809-12459828 | None:intergenic | 35.0% | |
ACAATACGACCGTAAATTGT+AGG | - | chr7_1:12460138-12460157 | None:intergenic | 35.0% | |
!! | GAGGTTGACTTTTAAAAGCT+AGG | - | chr7_1:12460230-12460249 | None:intergenic | 35.0% |
TAAGTACAAAGTTGAAGTGG+TGG | - | chr7_1:12460252-12460271 | None:intergenic | 35.0% | |
TTGATCAATAATAACGGTGG+TGG | - | chr7_1:12460352-12460371 | None:intergenic | 35.0% | |
AAGGTTTGATATGGTTGAAG+AGG | - | chr7_1:12460422-12460441 | None:intergenic | 35.0% | |
TTTCTCGTGAAGGTTTGATA+TGG | - | chr7_1:12460431-12460450 | None:intergenic | 35.0% | |
CTAGGGTTTAAACTGACTAT+TGG | + | chr7_1:12460744-12460763 | Msa1009980:intron | 35.0% | |
!! | TGGTCTTTTGGTCTTTTATG+CGG | + | chr7_1:12460847-12460866 | Msa1009980:intron | 35.0% |
! | TTTCTAGAGGTTAAGAAAGG+CGG | + | chr7_1:12460870-12460889 | Msa1009980:intron | 35.0% |
TACCAAATTTGAAGGGAATG+TGG | + | chr7_1:12461299-12461318 | Msa1009980:intron | 35.0% | |
TACCACATTCCCTTCAAATT+TGG | - | chr7_1:12461304-12461323 | None:intergenic | 35.0% | |
TTTATATAGAGGCTTAGGTG+AGG | - | chr7_1:12461411-12461430 | None:intergenic | 35.0% | |
ATATTGGAGTTAGAGAAGAG+CGG | - | chr7_1:12461443-12461462 | None:intergenic | 35.0% | |
CAGAGAATCAAGAAGAATTG+AGG | - | chr7_1:12461542-12461561 | None:intergenic | 35.0% | |
AACACAAAGCTATGCAATCT+GGG | - | chr7_1:12462144-12462163 | None:intergenic | 35.0% | |
AAACACAAAGCTATGCAATC+TGG | - | chr7_1:12462145-12462164 | None:intergenic | 35.0% | |
CAATGCTATGCAATCAAATC+TGG | - | chr7_1:12462330-12462349 | None:intergenic | 35.0% | |
! | TCAATTGCGTTTGGAACAAT+TGG | + | chr7_1:12462359-12462378 | Msa1009980:intron | 35.0% |
TTGCAACGAAGTCATATTTC+TGG | - | chr7_1:12462411-12462430 | None:intergenic | 35.0% | |
!! | GCTTTATTCTTTTGGCAGAA+AGG | + | chr7_1:12462461-12462480 | Msa1009980:intron | 35.0% |
AAGGTGTGTGAATGAACTAA+TGG | + | chr7_1:12462480-12462499 | Msa1009980:CDS | 35.0% | |
! | AATTTTTCTACTCCACCGTT+AGG | - | chr7_1:12462595-12462614 | None:intergenic | 35.0% |
!!! | CAAACCATCCTGAGATTTTT+TGG | + | chr7_1:12462754-12462773 | Msa1009980:intron | 35.0% |
ATCAGAACCCAAAAAATCTC+AGG | - | chr7_1:12462765-12462784 | None:intergenic | 35.0% | |
! | TGGGTTCTGATATAGTTCTT+AGG | + | chr7_1:12462774-12462793 | Msa1009980:intron | 35.0% |
TGAAGAAAAAAGCAAAGAGG+AGG | - | chr7_1:12462849-12462868 | None:intergenic | 35.0% | |
GGTTGAAGAAAAAAGCAAAG+AGG | - | chr7_1:12462852-12462871 | None:intergenic | 35.0% | |
TGTATAGAGAAAGGGAACAA+GGG | - | chr7_1:12462873-12462892 | None:intergenic | 35.0% | |
CGTTGTTGTGTATAGAGAAA+GGG | - | chr7_1:12462881-12462900 | None:intergenic | 35.0% | |
TCGTTGTTGTGTATAGAGAA+AGG | - | chr7_1:12462882-12462901 | None:intergenic | 35.0% | |
!!! | GTTTTGAAGGCTATGAAAAG+AGG | + | chr7_1:12462949-12462968 | Msa1009980:CDS | 35.0% |
AAGCTTATCATCAAAACCTG+TGG | + | chr7_1:12463158-12463177 | Msa1009980:CDS | 35.0% | |
AGCTTATCATCAAAACCTGT+GGG | + | chr7_1:12463159-12463178 | Msa1009980:CDS | 35.0% | |
!!! | CACAGCTATTTTAAGACCAT+CGG | - | chr7_1:12463228-12463247 | None:intergenic | 35.0% |
!!! | TATTTTGGCAAACTAGGTTC+TGG | + | chr7_1:12463344-12463363 | Msa1009980:CDS | 35.0% |
!! | TGACTAAGAATTCTGGAATC+AGG | + | chr7_1:12463546-12463565 | Msa1009980:CDS | 35.0% |
!! | TAAGAATTCTGGAATCAGGA+AGG | + | chr7_1:12463550-12463569 | Msa1009980:CDS | 35.0% |
! | AAGTCACATATGTCGGATTT+TGG | - | chr7_1:12463581-12463600 | None:intergenic | 35.0% |
GACTTTGAATTTGAACCTTG+CGG | + | chr7_1:12463596-12463615 | Msa1009980:CDS | 35.0% | |
ACTTTGAATTTGAACCTTGC+GGG | + | chr7_1:12463597-12463616 | Msa1009980:CDS | 35.0% | |
TACTCAATGAACGGAATTGA+GGG | + | chr7_1:12463620-12463639 | Msa1009980:CDS | 35.0% | |
!! | TCTGAATGAACTTGTTGGAA+GGG | + | chr7_1:12463733-12463752 | Msa1009980:CDS | 35.0% |
ACTTGACAAATTTCCTTTGG+AGG | + | chr7_1:12463820-12463839 | Msa1009980:CDS | 35.0% | |
TTGTATCCTTTAACCTCCAA+AGG | - | chr7_1:12463836-12463855 | None:intergenic | 35.0% | |
GAGGTTAAAGGATACAAATG+TGG | + | chr7_1:12463839-12463858 | Msa1009980:CDS | 35.0% | |
CATCATTTCGAACAAAGGTA+CGG | - | chr7_1:12463910-12463929 | None:intergenic | 35.0% | |
!!! | CATTTTTTTTTGTGGTGGCC+GGG | - | chr7_1:12458383-12458402 | None:intergenic | 40.0% |
TTCAAGGCTGAATTTGAACC+GGG | - | chr7_1:12458441-12458460 | None:intergenic | 40.0% | |
GTTCAAGGCTGAATTTGAAC+CGG | - | chr7_1:12458442-12458461 | None:intergenic | 40.0% | |
GATAAATAGTCCCCTTAACG+GGG | - | chr7_1:12458879-12458898 | None:intergenic | 40.0% | |
ACCTCTAGCAATTAGAAGTC+CGG | - | chr7_1:12458921-12458940 | None:intergenic | 40.0% | |
CAAGATGCTTAGACCATTCA+AGG | + | chr7_1:12458955-12458974 | Msa1009980:intron | 40.0% | |
TCTTTCAGCCGAAATGTACA+TGG | + | chr7_1:12459190-12459209 | Msa1009980:intron | 40.0% | |
AGGTTATTGAGAGTCATCTG+AGG | + | chr7_1:12459251-12459270 | Msa1009980:intron | 40.0% | |
!!! | CTTGGACTACCTGTTTTTGT+TGG | + | chr7_1:12459277-12459296 | Msa1009980:intron | 40.0% |
!!! | GACTACCTGTTTTTGTTGGT+AGG | + | chr7_1:12459281-12459300 | Msa1009980:intron | 40.0% |
! | GAAAATTTTCACTCGACCGT+TGG | + | chr7_1:12459369-12459388 | Msa1009980:intron | 40.0% |
TCATTCAGACATTGCTATGG+GGG | - | chr7_1:12459723-12459742 | None:intergenic | 40.0% | |
GCATCATTCAGACATTGCTA+TGG | - | chr7_1:12459726-12459745 | None:intergenic | 40.0% | |
! | TGAGACATTACGTCACTTTG+CGG | - | chr7_1:12459918-12459937 | None:intergenic | 40.0% |
TAAACTTGGTTGATTAGCGG+AGG | + | chr7_1:12460047-12460066 | Msa1009980:intron | 40.0% | |
TGATATGGTTGAAGAGGTTG+AGG | - | chr7_1:12460416-12460435 | None:intergenic | 40.0% | |
AAACATATCAGAGGGCGAAT+GGG | - | chr7_1:12460623-12460642 | None:intergenic | 40.0% | |
TAAACATATCAGAGGGCGAA+TGG | - | chr7_1:12460624-12460643 | None:intergenic | 40.0% | |
AACGCTAAAATAAGCCCACA+AGG | - | chr7_1:12460809-12460828 | None:intergenic | 40.0% | |
ACCAAAAGACCAACTTCCTT+GGG | - | chr7_1:12460839-12460858 | None:intergenic | 40.0% | |
!! | GTCTTTTATGCGGTTTCTAG+AGG | + | chr7_1:12460857-12460876 | Msa1009980:intron | 40.0% |
! | CGGTTTCTAGAGGTTAAGAA+AGG | + | chr7_1:12460867-12460886 | Msa1009980:intron | 40.0% |
! | TAGAGGGCTTTTAAGCCTTT+AGG | + | chr7_1:12460953-12460972 | Msa1009980:intron | 40.0% |
TCTGTTGTCCCATTTCTTCA+CGG | - | chr7_1:12461336-12461355 | None:intergenic | 40.0% | |
TCTTCGTTCTTTCTTTCCGT+TGG | + | chr7_1:12461504-12461523 | Msa1009980:intron | 40.0% | |
! | GGAATTCGAGAAGCATAGAT+CGG | + | chr7_1:12461697-12461716 | Msa1009980:intron | 40.0% |
ATGTTGTTGCTAGCATTTGG+TGG | + | chr7_1:12461861-12461880 | Msa1009980:intron | 40.0% | |
CGTTCTCTTTCAATTGCGTT+TGG | + | chr7_1:12462350-12462369 | Msa1009980:intron | 40.0% | |
GAACTAATGGAGTCAAAAGG+TGG | + | chr7_1:12462493-12462512 | Msa1009980:CDS | 40.0% | |
! | TTTTTGTACGAAGCTCCTCT+CGG | + | chr7_1:12462547-12462566 | Msa1009980:CDS | 40.0% |
TCTTCAATGATGTAACCGAG+AGG | - | chr7_1:12462565-12462584 | None:intergenic | 40.0% | |
ATTGAAGACGTTCGACCTAA+CGG | + | chr7_1:12462577-12462596 | Msa1009980:CDS | 40.0% | |
GAACCCAAAAAATCTCAGGA+TGG | - | chr7_1:12462761-12462780 | None:intergenic | 40.0% | |
CAAAGAGGAGGACAAGAAAA+AGG | - | chr7_1:12462837-12462856 | None:intergenic | 40.0% | |
GTGTATAGAGAAAGGGAACA+AGG | - | chr7_1:12462874-12462893 | None:intergenic | 40.0% | |
TCATGGCCATCTTGAATCAA+AGG | - | chr7_1:12462914-12462933 | None:intergenic | 40.0% | |
!!! | AACTCAGCTATCGGTTTTGA+AGG | + | chr7_1:12462936-12462955 | Msa1009980:CDS | 40.0% |
AAATCAGTGAGATACACTCG+CGG | + | chr7_1:12463248-12463267 | Msa1009980:CDS | 40.0% | |
GTTTGCCAAAATAGCTGTCA+AGG | - | chr7_1:12463337-12463356 | None:intergenic | 40.0% | |
!!! | GACAGCTATTTTGGCAAACT+AGG | + | chr7_1:12463338-12463357 | Msa1009980:CDS | 40.0% |
TGGTAGCCAAGCTTATATGA+TGG | + | chr7_1:12463364-12463383 | Msa1009980:CDS | 40.0% | |
GGTAGCCAAGCTTATATGAT+GGG | + | chr7_1:12463365-12463384 | Msa1009980:CDS | 40.0% | |
CATCACCCATCATATAAGCT+TGG | - | chr7_1:12463373-12463392 | None:intergenic | 40.0% | |
GATCAGTCATGCACATTTCA+AGG | - | chr7_1:12463469-12463488 | None:intergenic | 40.0% | |
GCTTCGATGACTAAGAATTC+TGG | + | chr7_1:12463539-12463558 | Msa1009980:CDS | 40.0% | |
!! | CACATATGTCGGATTTTGGT+AGG | - | chr7_1:12463577-12463596 | None:intergenic | 40.0% |
GTACTCAATGAACGGAATTG+AGG | + | chr7_1:12463619-12463638 | Msa1009980:CDS | 40.0% | |
!! | TATGCAAGCTTTGAAGCACT+GGG | + | chr7_1:12463689-12463708 | Msa1009980:CDS | 40.0% |
!! | CTCTGAATGAACTTGTTGGA+AGG | + | chr7_1:12463732-12463751 | Msa1009980:CDS | 40.0% |
AATGCAACAGAAAACTCAGC+TGG | - | chr7_1:12463776-12463795 | None:intergenic | 40.0% | |
GCATTGCACATTGATGCAAA+TGG | + | chr7_1:12463791-12463810 | Msa1009980:CDS | 40.0% | |
AAGGATACAAATGTGGTGAG+AGG | + | chr7_1:12463846-12463865 | Msa1009980:CDS | 40.0% | |
! | AATGAAGTGCTTGGAGAAGA+TGG | + | chr7_1:12463872-12463891 | Msa1009980:CDS | 40.0% |
CGTACCTTTGTTCGAAATGA+TGG | + | chr7_1:12463908-12463927 | Msa1009980:CDS | 40.0% | |
CAACATTTCAGAGTAGACCT+TGG | - | chr7_1:12463944-12463963 | None:intergenic | 40.0% | |
AATTTGTAGGAGAAGGGACG+TGG | - | chr7_1:12458134-12458153 | None:intergenic | 45.0% | |
CGTCCCTTCTCCTACAAATT+TGG | + | chr7_1:12458134-12458153 | Msa1009980:intron | 45.0% | |
!! | GATGAGTTTTGTCCTCAGCA+AGG | + | chr7_1:12458852-12458871 | Msa1009980:intron | 45.0% |
CCTCTAGCAATTAGAAGTCC+GGG | - | chr7_1:12458920-12458939 | None:intergenic | 45.0% | |
! | GAGAGTCATCTGAGGTATCT+TGG | + | chr7_1:12459259-12459278 | Msa1009980:intron | 45.0% |
! | CCTAGTCGGGTATTTTCAAC+CGG | - | chr7_1:12459572-12459591 | None:intergenic | 45.0% |
GGTGGAATTGTCAGGGTTTA+AGG | - | chr7_1:12459624-12459643 | None:intergenic | 45.0% | |
AGACATTGCTATGGGGGATA+TGG | - | chr7_1:12459717-12459736 | None:intergenic | 45.0% | |
! | AGACATTACGTCACTTTGCG+GGG | - | chr7_1:12459916-12459935 | None:intergenic | 45.0% |
! | GAGACATTACGTCACTTTGC+GGG | - | chr7_1:12459917-12459936 | None:intergenic | 45.0% |
GTACAAAGTTGAAGTGGTGG+AGG | - | chr7_1:12460249-12460268 | None:intergenic | 45.0% | |
GCTAAAATAAGCCCACAAGG+AGG | - | chr7_1:12460806-12460825 | None:intergenic | 45.0% | |
TTTAGCGTTACTTCACCCCA+AGG | + | chr7_1:12460820-12460839 | Msa1009980:intron | 45.0% | |
TTACTTCACCCCAAGGAAGT+TGG | + | chr7_1:12460827-12460846 | Msa1009980:intron | 45.0% | |
CCAAAAGACCAACTTCCTTG+GGG | - | chr7_1:12460838-12460857 | None:intergenic | 45.0% | |
GACCAAAAGACCAACTTCCT+TGG | - | chr7_1:12460840-12460859 | None:intergenic | 45.0% | |
! | GGCTTAAAAGCCCTCTAGAA+AGG | - | chr7_1:12460950-12460969 | None:intergenic | 45.0% |
GAGGAGCGAAAGAAAACCAA+CGG | - | chr7_1:12461523-12461542 | None:intergenic | 45.0% | |
AGGAGCTTCGTACAAAAAGG+AGG | - | chr7_1:12462545-12462564 | None:intergenic | 45.0% | |
GAGAGGAGCTTCGTACAAAA+AGG | - | chr7_1:12462548-12462567 | None:intergenic | 45.0% | |
AGGAGGACAAGAAAAAGGAG+AGG | - | chr7_1:12462832-12462851 | None:intergenic | 45.0% | |
GCCATGACAAACTCAGCTAT+CGG | + | chr7_1:12462927-12462946 | Msa1009980:CDS | 45.0% | |
ACCGATAGCTGAGTTTGTCA+TGG | - | chr7_1:12462931-12462950 | None:intergenic | 45.0% | |
ACCAGCAGAATGCACTATTG+TGG | + | chr7_1:12463067-12463086 | Msa1009980:CDS | 45.0% | |
TCCACAATAGTGCATTCTGC+TGG | - | chr7_1:12463071-12463090 | None:intergenic | 45.0% | |
AAGCAATTTCGTAGTCCCAC+AGG | - | chr7_1:12463177-12463196 | None:intergenic | 45.0% | |
CGGCAAGCTTAAGAATTGCA+GGG | - | chr7_1:12463208-12463227 | None:intergenic | 45.0% | |
TCGGCAAGCTTAAGAATTGC+AGG | - | chr7_1:12463209-12463228 | None:intergenic | 45.0% | |
GCAATTCTTAAGCTTGCCGA+TGG | + | chr7_1:12463209-12463228 | Msa1009980:CDS | 45.0% | |
! | GCTGTCCTTGACAGCTATTT+TGG | + | chr7_1:12463329-12463348 | Msa1009980:CDS | 45.0% |
TCAAGGCCATAGACAGCTTT+CGG | - | chr7_1:12463452-12463471 | None:intergenic | 45.0% | |
ATAGCTGAACCCATCTTCAG+GGG | - | chr7_1:12463672-12463691 | None:intergenic | 45.0% | |
CATAGCTGAACCCATCTTCA+GGG | - | chr7_1:12463673-12463692 | None:intergenic | 45.0% | |
!! | CTATGCAAGCTTTGAAGCAC+TGG | + | chr7_1:12463688-12463707 | Msa1009980:CDS | 45.0% |
! | GAGAGGATCAATGAAGTGCT+TGG | + | chr7_1:12463863-12463882 | Msa1009980:CDS | 45.0% |
GCAGCCATCATTTCGAACAA+AGG | - | chr7_1:12463915-12463934 | None:intergenic | 45.0% | |
!! | GGTCTACTCTGAAATGTTGC+TGG | + | chr7_1:12463945-12463964 | Msa1009980:CDS | 45.0% |
! | TCTGAAATGTTGCTGGAGTG+AGG | + | chr7_1:12463952-12463971 | Msa1009980:CDS | 45.0% |
!!! | AAAAAATTCTAAAATTTTTT+GGG | - | chr7_1:12458486-12458505 | None:intergenic | 5.0% |
!!! | TAAAAAATTCTAAAATTTTT+TGG | - | chr7_1:12458487-12458506 | None:intergenic | 5.0% |
!!! | TATTAATTTTTAAATTTTTG+CGG | - | chr7_1:12458540-12458559 | None:intergenic | 5.0% |
!!! | ATTGTTATTATTATTTTTTA+TGG | + | chr7_1:12460656-12460675 | Msa1009980:intron | 5.0% |
!!! | TATTATCATAATATTTTTTT+AGG | + | chr7_1:12461027-12461046 | Msa1009980:intron | 5.0% |
GGTGGTTTATATAGGGGCTG+AGG | + | chr7_1:12458044-12458063 | Msa1009980:intron | 50.0% | |
TCAACTGAACTAAGCTCGCG+AGG | - | chr7_1:12458319-12458338 | None:intergenic | 50.0% | |
! | AAGGTCTGGGGTTCAAATCC+CGG | + | chr7_1:12458362-12458381 | Msa1009980:intron | 50.0% |
TCTAACATACCCAAGCGTCC+CGG | + | chr7_1:12458420-12458439 | Msa1009980:intron | 50.0% | |
GAATTTGAACCGGGACGCTT+GGG | - | chr7_1:12458432-12458451 | None:intergenic | 50.0% | |
TGAATTTGAACCGGGACGCT+TGG | - | chr7_1:12458433-12458452 | None:intergenic | 50.0% | |
! | GACGATCGGTCTCTCCTTTT+AGG | - | chr7_1:12458676-12458695 | None:intergenic | 50.0% |
CCCGGACTTCTAATTGCTAG+AGG | + | chr7_1:12458917-12458936 | Msa1009980:intron | 50.0% | |
TCGACCGTTGGGATAGAAGT+TGG | + | chr7_1:12459381-12459400 | Msa1009980:intron | 50.0% | |
CGACCGTTGGGATAGAAGTT+GGG | + | chr7_1:12459382-12459401 | Msa1009980:intron | 50.0% | |
GACCGTTGGGATAGAAGTTG+GGG | + | chr7_1:12459383-12459402 | Msa1009980:intron | 50.0% | |
CCGGTTGAAAATACCCGACT+AGG | + | chr7_1:12459569-12459588 | Msa1009980:intron | 50.0% | |
GATATGGTTTGAGTGGGTCG+TGG | - | chr7_1:12459802-12459821 | None:intergenic | 50.0% | |
! | TACGTCACTTTGCGGGGATT+TGG | - | chr7_1:12459910-12459929 | None:intergenic | 50.0% |
AGTGCACTTTGCGATGAGGT+GGG | - | chr7_1:12460384-12460403 | None:intergenic | 50.0% | |
! | AGAGAGTGCACTTTGCGATG+AGG | - | chr7_1:12460388-12460407 | None:intergenic | 50.0% |
!!! | CCCCAAGGAAGTTGGTCTTT+TGG | + | chr7_1:12460835-12460854 | Msa1009980:intron | 50.0% |
GACGTCTGAGCCTTTCTAGA+GGG | + | chr7_1:12460937-12460956 | Msa1009980:intron | 50.0% | |
! | GGTGTTTTCTCTGATCCTGC+CGG | + | chr7_1:12462996-12463015 | Msa1009980:CDS | 50.0% |
CCTCGGAAAAGCTACGATGT+GGG | - | chr7_1:12463304-12463323 | None:intergenic | 50.0% | |
TCCTCGGAAAAGCTACGATG+TGG | - | chr7_1:12463305-12463324 | None:intergenic | 50.0% | |
GTCAAGGACAGCAACTTCCT+CGG | - | chr7_1:12463321-12463340 | None:intergenic | 50.0% | |
GCTTCACCGAAAGCTGTCTA+TGG | + | chr7_1:12463443-12463462 | Msa1009980:CDS | 50.0% | |
CCTTGCGGGTACTCAATGAA+CGG | + | chr7_1:12463611-12463630 | Msa1009980:CDS | 50.0% | |
TTCAGGGGTGACATGGATAG+TGG | - | chr7_1:12463657-12463676 | None:intergenic | 50.0% | |
ATCCATGTCACCCCTGAAGA+TGG | + | chr7_1:12463659-12463678 | Msa1009980:CDS | 50.0% | |
TCCATGTCACCCCTGAAGAT+GGG | + | chr7_1:12463660-12463679 | Msa1009980:CDS | 50.0% | |
GCATAGCTGAACCCATCTTC+AGG | - | chr7_1:12463674-12463693 | None:intergenic | 50.0% | |
ATGATGGCTGCTCATCTCCA+AGG | + | chr7_1:12463924-12463943 | Msa1009980:CDS | 50.0% | |
TGAGAACGAGGAGGAAGTGA+AGG | + | chr7_1:12463976-12463995 | Msa1009980:CDS | 50.0% | |
CTCAGCAAGGTCCCCGTTAA+GGG | + | chr7_1:12458865-12458884 | Msa1009980:intron | 55.0% | |
TCAGCAAGGTCCCCGTTAAG+GGG | + | chr7_1:12458866-12458885 | Msa1009980:intron | 55.0% | |
GGCCCCAACTTCTATCCCAA+CGG | - | chr7_1:12459388-12459407 | None:intergenic | 55.0% | |
! | ATCAGTGGCGGAGTCCTTCA+TGG | + | chr7_1:12459764-12459783 | Msa1009980:intron | 55.0% |
! | TCAGTGGCGGAGTCCTTCAT+GGG | + | chr7_1:12459765-12459784 | Msa1009980:intron | 55.0% |
GAGTGCACTTTGCGATGAGG+TGG | - | chr7_1:12460385-12460404 | None:intergenic | 55.0% | |
GGACGTCTGAGCCTTTCTAG+AGG | + | chr7_1:12460936-12460955 | Msa1009980:intron | 55.0% | |
GTGCCACGCCGTGAAGAAAT+GGG | + | chr7_1:12461325-12461344 | Msa1009980:intron | 55.0% | |
TGTCCCATTTCTTCACGGCG+TGG | - | chr7_1:12461331-12461350 | None:intergenic | 55.0% | |
GAAGACGTTCGACCTAACGG+TGG | + | chr7_1:12462580-12462599 | Msa1009980:CDS | 55.0% | |
TTCTCTGATCCTGCCGGACT+AGG | + | chr7_1:12463002-12463021 | Msa1009980:CDS | 55.0% | |
! | CGCGGAAGCTTCATTTTCCC+AGG | + | chr7_1:12463266-12463285 | Msa1009980:CDS | 55.0% |
GTGGGAATGATTGAGCGCCT+GGG | - | chr7_1:12463286-12463305 | None:intergenic | 55.0% | |
TGTGGGAATGATTGAGCGCC+TGG | - | chr7_1:12463287-12463306 | None:intergenic | 55.0% | |
! | CCCACATCGTAGCTTTTCCG+AGG | + | chr7_1:12463301-12463320 | Msa1009980:CDS | 55.0% |
CCGTTCATTGAGTACCCGCA+AGG | - | chr7_1:12463614-12463633 | None:intergenic | 55.0% | |
ACCCATCTTCAGGGGTGACA+TGG | - | chr7_1:12463664-12463683 | None:intergenic | 55.0% | |
CTGGAGTGAGGATGAGAACG+AGG | + | chr7_1:12463964-12463983 | Msa1009980:CDS | 55.0% | |
GAGTGAGGATGAGAACGAGG+AGG | + | chr7_1:12463967-12463986 | Msa1009980:CDS | 55.0% | |
CCTTAACGGGGACCTTGCTG+AGG | - | chr7_1:12458867-12458886 | None:intergenic | 60.0% | |
CCTCAGCAAGGTCCCCGTTA+AGG | + | chr7_1:12458864-12458883 | Msa1009980:intron | 60.0% | |
! | CTGATTTCCCTTGGCGGACG+TGG | + | chr7_1:12459652-12459671 | Msa1009980:intron | 60.0% |
CTGAACACCACGTCCGCCAA+GGG | - | chr7_1:12459662-12459681 | None:intergenic | 60.0% | |
TGGCGGAGTCCTTCATGGGT+TGG | + | chr7_1:12459769-12459788 | Msa1009980:intron | 60.0% | |
GGCGGAGTCCTTCATGGGTT+GGG | + | chr7_1:12459770-12459789 | Msa1009980:intron | 60.0% | |
! | GCGGAGTCCTTCATGGGTTG+GGG | + | chr7_1:12459771-12459790 | Msa1009980:intron | 60.0% |
!! | CGGAGTCCTTCATGGGTTGG+GGG | + | chr7_1:12459772-12459791 | Msa1009980:intron | 60.0% |
!! | AGTCCTTCATGGGTTGGGGG+TGG | + | chr7_1:12459775-12459794 | Msa1009980:intron | 60.0% |
!! | GTCCTTCATGGGTTGGGGGT+GGG | + | chr7_1:12459776-12459795 | Msa1009980:intron | 60.0% |
AAGAAAGGCGGCGCCCTAAG+AGG | + | chr7_1:12460882-12460901 | Msa1009980:intron | 60.0% | |
AGAAAGGCGGCGCCCTAAGA+GGG | + | chr7_1:12460883-12460902 | Msa1009980:intron | 60.0% | |
CAGAAGGGCTCCTGAGGACT+AGG | - | chr7_1:12460914-12460933 | None:intergenic | 60.0% | |
CTAGTCCTCAGGAGCCCTTC+TGG | + | chr7_1:12460912-12460931 | Msa1009980:intron | 60.0% | |
GGCTCAGACGTCCTCCAGAA+GGG | - | chr7_1:12460929-12460948 | None:intergenic | 60.0% | |
AGGCTCAGACGTCCTCCAGA+AGG | - | chr7_1:12460930-12460949 | None:intergenic | 60.0% | |
CGTGCCACGCCGTGAAGAAA+TGG | + | chr7_1:12461324-12461343 | Msa1009980:intron | 60.0% | |
CAATGCTCGGAGGCCTAGTC+CGG | - | chr7_1:12463018-12463037 | None:intergenic | 60.0% | |
CCTGAACACCACGTCCGCCA+AGG | - | chr7_1:12459663-12459682 | None:intergenic | 65.0% | |
! | CCTTGGCGGACGTGGTGTTC+AGG | + | chr7_1:12459660-12459679 | Msa1009980:intron | 65.0% |
GAAAGGCGGCGCCCTAAGAG+GGG | + | chr7_1:12460884-12460903 | Msa1009980:intron | 65.0% | |
GACTAGGCGCGCCCCTCTTA+GGG | - | chr7_1:12460898-12460917 | None:intergenic | 65.0% | |
GTCCTCAGGAGCCCTTCTGG+AGG | + | chr7_1:12460915-12460934 | Msa1009980:intron | 65.0% | |
GTCCTCCAGAAGGGCTCCTG+AGG | - | chr7_1:12460920-12460939 | None:intergenic | 65.0% | |
GGCCCACCCCCAACCCATGA+AGG | - | chr7_1:12459781-12459800 | None:intergenic | 70.0% | |
GGACTAGGCGCGCCCCTCTT+AGG | - | chr7_1:12460899-12460918 | None:intergenic | 70.0% | |
! | GAGGGGCGCGCCTAGTCCTC+AGG | + | chr7_1:12460901-12460920 | Msa1009980:intron | 75.0% |
GCTCGGAGGCCTAGTCCGGC+AGG | - | chr7_1:12463014-12463033 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 12458041 | 12464006 | 12458041 | ID=Msa1009980;Name=Msa1009980 |
chr7_1 | mRNA | 12458041 | 12464006 | 12458041 | ID=Msa1009980-mRNA-1;Parent=Msa1009980;Name=Msa1009980-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0.33|0.66|1|1|3|0|415 |
chr7_1 | exon | 12458041 | 12458047 | 12458041 | ID=Msa1009980-mRNA-1:exon:3215;Parent=Msa1009980-mRNA-1 |
chr7_1 | exon | 12462479 | 12462636 | 12462479 | ID=Msa1009980-mRNA-1:exon:3216;Parent=Msa1009980-mRNA-1 |
chr7_1 | exon | 12462924 | 12464006 | 12462924 | ID=Msa1009980-mRNA-1:exon:3217;Parent=Msa1009980-mRNA-1 |
chr7_1 | CDS | 12458041 | 12458047 | 12458041 | ID=Msa1009980-mRNA-1:cds;Parent=Msa1009980-mRNA-1 |
chr7_1 | CDS | 12462479 | 12462636 | 12462479 | ID=Msa1009980-mRNA-1:cds;Parent=Msa1009980-mRNA-1 |
chr7_1 | CDS | 12462924 | 12464006 | 12462924 | ID=Msa1009980-mRNA-1:cds;Parent=Msa1009980-mRNA-1 |
Gene Sequence |
Protein sequence |