Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100570 | PNY07089.1 | 62.275 | 167 | 55 | 3 | 1 | 164 | 82 | 243 | 9.38e-65 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100570 | sp|P21226|CHI2_PEA | 59.880 | 167 | 59 | 3 | 1 | 164 | 80 | 241 | 8.88e-64 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100570 | A0A2K3NVM5 | 62.275 | 167 | 55 | 3 | 1 | 164 | 82 | 243 | 4.48e-65 | 211 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1100570 | Msa1136050 | 0.854707 | 1.028622e-61 | -8.615850e-47 |
| Msa1100570 | Msa1350500 | 0.801150 | 1.031309e-48 | -8.615850e-47 |
| Msa0247050 | Msa1100570 | 0.804173 | 2.453047e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100570 | MtrunA17_Chr3g0145981 | 64.286 | 154 | 51 | 2 | 1 | 151 | 103 | 255 | 6.16e-66 | 204 |
| Msa1100570 | MtrunA17_Chr8g0370851 | 52.381 | 147 | 65 | 3 | 1 | 144 | 92 | 236 | 1.19e-50 | 164 |
| Msa1100570 | MtrunA17_Chr8g0370821 | 51.701 | 147 | 66 | 3 | 1 | 144 | 103 | 247 | 6.22e-49 | 160 |
| Msa1100570 | MtrunA17_Chr8g0370831 | 48.299 | 147 | 58 | 2 | 1 | 144 | 94 | 225 | 3.28e-42 | 142 |
| Msa1100570 | MtrunA17_Chr7g0270841 | 43.871 | 155 | 82 | 3 | 1 | 151 | 48 | 201 | 6.28e-40 | 136 |
| Msa1100570 | MtrunA17_Chr2g0329781 | 39.716 | 141 | 72 | 3 | 7 | 145 | 78 | 207 | 5.89e-31 | 112 |
| Msa1100570 | MtrunA17_Chr2g0329791 | 38.462 | 156 | 83 | 3 | 7 | 160 | 98 | 242 | 1.10e-30 | 112 |
| Msa1100570 | MtrunA17_Chr2g0294721 | 34.839 | 155 | 92 | 5 | 1 | 148 | 68 | 220 | 3.38e-23 | 93.2 |
| Msa1100570 | MtrunA17_Chr1g0206111 | 33.333 | 171 | 104 | 5 | 1 | 164 | 75 | 242 | 2.52e-22 | 90.9 |
| Msa1100570 | MtrunA17_Chr7g0221751 | 32.749 | 171 | 105 | 5 | 1 | 164 | 72 | 239 | 4.34e-22 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100570 | AT3G12500.1 | 60.390 | 154 | 57 | 2 | 1 | 151 | 98 | 250 | 6.72e-62 | 194 |
| Msa1100570 | AT4G01700.1 | 46.452 | 155 | 78 | 3 | 1 | 151 | 50 | 203 | 5.35e-44 | 147 |
| Msa1100570 | AT1G02360.1 | 42.581 | 155 | 84 | 3 | 1 | 151 | 42 | 195 | 9.99e-39 | 133 |
| Msa1100570 | AT1G02360.3 | 42.581 | 155 | 84 | 3 | 1 | 151 | 94 | 247 | 2.86e-38 | 133 |
| Msa1100570 | AT1G02360.2 | 42.581 | 155 | 84 | 3 | 1 | 151 | 88 | 241 | 3.32e-38 | 133 |
| Msa1100570 | AT3G54420.1 | 41.935 | 155 | 77 | 3 | 8 | 160 | 90 | 233 | 4.80e-35 | 123 |
| Msa1100570 | AT2G43590.1 | 37.267 | 161 | 84 | 4 | 2 | 160 | 80 | 225 | 1.47e-34 | 122 |
| Msa1100570 | AT2G43580.1 | 36.025 | 161 | 86 | 5 | 2 | 160 | 81 | 226 | 3.94e-31 | 113 |
| Msa1100570 | AT2G43610.1 | 37.107 | 159 | 84 | 3 | 2 | 160 | 100 | 242 | 2.66e-29 | 108 |
| Msa1100570 | AT2G43620.1 | 37.107 | 159 | 84 | 3 | 2 | 160 | 102 | 244 | 1.33e-28 | 107 |
| Msa1100570 | AT1G56680.1 | 42.282 | 149 | 69 | 5 | 2 | 149 | 96 | 228 | 1.14e-27 | 104 |
| Msa1100570 | AT1G56680.2 | 43.357 | 143 | 64 | 5 | 2 | 143 | 119 | 245 | 1.67e-27 | 104 |
| Msa1100570 | AT2G43600.1 | 38.255 | 149 | 74 | 4 | 2 | 149 | 92 | 223 | 4.82e-25 | 97.8 |
| Msa1100570 | AT2G43570.1 | 38.194 | 144 | 76 | 4 | 1 | 143 | 89 | 220 | 8.58e-25 | 97.1 |
| Msa1100570 | AT2G43600.2 | 38.255 | 149 | 74 | 4 | 2 | 149 | 113 | 244 | 9.37e-25 | 97.4 |
| Msa1100570 | AT1G05850.1 | 35.762 | 151 | 89 | 4 | 1 | 144 | 72 | 221 | 5.27e-23 | 93.2 |
| Msa1100570 | AT1G05850.2 | 35.762 | 151 | 89 | 4 | 1 | 144 | 72 | 221 | 5.27e-23 | 93.2 |
| Msa1100570 | AT3G16920.1 | 32.903 | 155 | 95 | 5 | 1 | 148 | 80 | 232 | 6.33e-21 | 87.8 |
| Msa1100570 | AT3G16920.2 | 32.903 | 155 | 95 | 5 | 1 | 148 | 104 | 256 | 8.87e-21 | 87.4 |
| Msa1100570 | AT3G47540.1 | 27.848 | 158 | 85 | 6 | 10 | 165 | 50 | 180 | 2.63e-12 | 62.8 |
| Msa1100570 | AT3G47540.2 | 27.848 | 158 | 85 | 6 | 10 | 165 | 50 | 180 | 4.93e-12 | 62.8 |
Find 57 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCCTTCGTTGCCGAACC+TGG | 0.245191 | 7_3:-30587099 | None:intergenic |
| TCAAGAGTGCTATATGGTTT+TGG | 0.289569 | 7_3:+30587420 | Msa1100570:CDS |
| TCTAAATTTCCATGTGTTCC+TGG | 0.293914 | 7_3:+30587269 | Msa1100570:CDS |
| ATCAAAGGGAATAAAATATA+TGG | 0.311345 | 7_3:+30587323 | Msa1100570:CDS |
| GGAGAATGTGGAAGTATAAT+AGG | 0.323922 | 7_3:+30587344 | Msa1100570:CDS |
| AAAGAAATATCCCCGGTCAT+AGG | 0.328899 | 7_3:-30587201 | None:intergenic |
| GCCGAACCTGGGGAATGTTT+TGG | 0.339992 | 7_3:-30587087 | None:intergenic |
| GGGTCTGTGGCAATGAGATC+TGG | 0.352495 | 7_3:-30587386 | None:intergenic |
| GCACTCTTGAAGGATATAAC+AGG | 0.377927 | 7_3:-30587407 | None:intergenic |
| AAGAAATATCCCCGGTCATA+GGG | 0.408514 | 7_3:-30587200 | None:intergenic |
| GGCTGGAAGGAATGCGCGAC+CGG | 0.412108 | 7_3:+30587581 | Msa1100570:CDS |
| GGAATGCGCGACCGGGTGGC+TGG | 0.413441 | 7_3:+30587589 | Msa1100570:CDS |
| TATCCTTCAAGAGTGCTATA+TGG | 0.418078 | 7_3:+30587414 | Msa1100570:CDS |
| AAACCATATAGCACTCTTGA+AGG | 0.434167 | 7_3:-30587417 | None:intergenic |
| TCTCCTTCGTTGCCGAACCT+GGG | 0.454761 | 7_3:-30587098 | None:intergenic |
| GCCAAAACATTCCCCAGGTT+CGG | 0.455985 | 7_3:+30587086 | Msa1100570:CDS |
| CTAAATTTCCATGTGTTCCT+GGG | 0.462737 | 7_3:+30587270 | Msa1100570:CDS |
| ACACATGGAAATTTAGAGCT+TGG | 0.463623 | 7_3:-30587263 | None:intergenic |
| CACCTCTTAGCCCCTATGAC+CGG | 0.464103 | 7_3:+30587189 | Msa1100570:CDS |
| TTCGCAGTAGTCTTCTTCGA+TGG | 0.468797 | 7_3:-30587240 | None:intergenic |
| CTCTCGTAGTATTGCTTCCC+AGG | 0.474080 | 7_3:-30587287 | None:intergenic |
| ACCTCTTAGCCCCTATGACC+GGG | 0.474353 | 7_3:+30587190 | Msa1100570:CDS |
| CAAGATGGCTTTACTTGGAA+AGG | 0.479312 | 7_3:-30587464 | None:intergenic |
| TCGCAGTAGTCTTCTTCGAT+GGG | 0.491948 | 7_3:-30587239 | None:intergenic |
| CCCCGGTCATAGGGGCTAAG+AGG | 0.498386 | 7_3:-30587191 | None:intergenic |
| AAGATGGCTTTACTTGGAAA+GGG | 0.503243 | 7_3:-30587463 | None:intergenic |
| TTATTCCCTTTGATCTGAAG+CGG | 0.516176 | 7_3:-30587314 | None:intergenic |
| AATAAAATATATGGAGAATG+TGG | 0.517331 | 7_3:+30587332 | Msa1100570:CDS |
| AGGGGTCCGCTTCAGATCAA+AGG | 0.525246 | 7_3:+30587308 | Msa1100570:CDS |
| GGCTTTACTTGGAAAGGGAA+AGG | 0.540330 | 7_3:-30587458 | None:intergenic |
| GGTCTGTGGCAATGAGATCT+GGG | 0.547304 | 7_3:-30587385 | None:intergenic |
| CCACATATGTCATAGAAGGC+TGG | 0.554306 | 7_3:+30587564 | Msa1100570:intron |
| ACTTGGAAAGGGAAAGGTGG+AGG | 0.555116 | 7_3:-30587452 | None:intergenic |
| GGGGTCCGCTTCAGATCAAA+GGG | 0.557701 | 7_3:+30587309 | Msa1100570:CDS |
| AAGCTGCCAAAACATTCCCC+AGG | 0.566465 | 7_3:+30587081 | Msa1100570:CDS |
| CTCGTTTACATCCAGCCACC+CGG | 0.571779 | 7_3:-30587600 | None:intergenic |
| GATGATGAGTGTGAGGGGAA+AGG | 0.572756 | 7_3:+30587032 | Msa1100570:CDS |
| GCTGGAAGGAATGCGCGACC+GGG | 0.573064 | 7_3:+30587582 | Msa1100570:CDS |
| AGCTCTCACAAAACAAGAGG+TGG | 0.574719 | 7_3:+30587164 | Msa1100570:CDS |
| GGAAGGAATGCGCGACCGGG+TGG | 0.575460 | 7_3:+30587585 | Msa1100570:CDS |
| CTCCTTCGTTGCCGAACCTG+GGG | 0.576604 | 7_3:-30587097 | None:intergenic |
| TATTGCTTCCCAGGAACACA+TGG | 0.580157 | 7_3:-30587278 | None:intergenic |
| TTCCCCAGGTTCGGCAACGA+AGG | 0.585501 | 7_3:+30587095 | Msa1100570:CDS |
| CACTCTTGAAGGATATAACA+GGG | 0.603547 | 7_3:-30587406 | None:intergenic |
| CGCGACGATGATGAGTGTGA+GGG | 0.608511 | 7_3:+30587026 | Msa1100570:CDS |
| CATTCACAAAGAAATATCCC+CGG | 0.613688 | 7_3:-30587208 | None:intergenic |
| TCGCGACGATGATGAGTGTG+AGG | 0.615130 | 7_3:+30587025 | Msa1100570:CDS |
| AGAAATATCCCCGGTCATAG+GGG | 0.616770 | 7_3:-30587199 | None:intergenic |
| GAAGGATATAACAGGGTCTG+TGG | 0.619235 | 7_3:-30587399 | None:intergenic |
| CCTCTTAGCCCCTATGACCG+GGG | 0.619811 | 7_3:+30587191 | Msa1100570:CDS |
| CTGGGAAGCAATACTACGAG+AGG | 0.622203 | 7_3:+30587288 | Msa1100570:CDS |
| CAAAGCTCTCACAAAACAAG+AGG | 0.630156 | 7_3:+30587161 | Msa1100570:CDS |
| ATATGTCATAGAAGGCTGGA+AGG | 0.630999 | 7_3:+30587568 | Msa1100570:intron |
| TGGGAAGCAATACTACGAGA+GGG | 0.631128 | 7_3:+30587289 | Msa1100570:CDS |
| TTTACTTGGAAAGGGAAAGG+TGG | 0.645661 | 7_3:-30587455 | None:intergenic |
| GCGACGATGATGAGTGTGAG+GGG | 0.672599 | 7_3:+30587027 | Msa1100570:CDS |
| GGGAAGCAATACTACGAGAG+GGG | 0.685899 | 7_3:+30587290 | Msa1100570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAAGGGAATAAAATATA+TGG | + | chr7_3:30587323-30587342 | Msa1100570:CDS | 20.0% |
| !! | AATAAAATATATGGAGAATG+TGG | + | chr7_3:30587332-30587351 | Msa1100570:CDS | 20.0% |
| ! | GACTAAAATCAAAATCAGTA+GGG | - | chr7_3:30587517-30587536 | None:intergenic | 25.0% |
| ! | TGACTAAAATCAAAATCAGT+AGG | - | chr7_3:30587518-30587537 | None:intergenic | 25.0% |
| !!! | AGAGAAATTGCTGCTTTTTT+TGG | + | chr7_3:30587137-30587156 | Msa1100570:CDS | 30.0% |
| !!! | CTGATTTTGATTTTAGTCAG+AGG | + | chr7_3:30587519-30587538 | Msa1100570:intron | 30.0% |
| !!! | ATTTTGATTTTAGTCAGAGG+AGG | + | chr7_3:30587522-30587541 | Msa1100570:intron | 30.0% |
| CATTCACAAAGAAATATCCC+CGG | - | chr7_3:30587211-30587230 | None:intergenic | 35.0% | |
| ! | ACACATGGAAATTTAGAGCT+TGG | - | chr7_3:30587266-30587285 | None:intergenic | 35.0% |
| TCTAAATTTCCATGTGTTCC+TGG | + | chr7_3:30587269-30587288 | Msa1100570:CDS | 35.0% | |
| CTAAATTTCCATGTGTTCCT+GGG | + | chr7_3:30587270-30587289 | Msa1100570:CDS | 35.0% | |
| TTATTCCCTTTGATCTGAAG+CGG | - | chr7_3:30587317-30587336 | None:intergenic | 35.0% | |
| ! | GGAGAATGTGGAAGTATAAT+AGG | + | chr7_3:30587344-30587363 | Msa1100570:CDS | 35.0% |
| CACTCTTGAAGGATATAACA+GGG | - | chr7_3:30587409-30587428 | None:intergenic | 35.0% | |
| !! | TATCCTTCAAGAGTGCTATA+TGG | + | chr7_3:30587414-30587433 | Msa1100570:CDS | 35.0% |
| AAACCATATAGCACTCTTGA+AGG | - | chr7_3:30587420-30587439 | None:intergenic | 35.0% | |
| !!! | TCAAGAGTGCTATATGGTTT+TGG | + | chr7_3:30587420-30587439 | Msa1100570:CDS | 35.0% |
| ! | AAGATGGCTTTACTTGGAAA+GGG | - | chr7_3:30587466-30587485 | None:intergenic | 35.0% |
| ATGACCACATATGTCATAGA+AGG | + | chr7_3:30587560-30587579 | Msa1100570:intron | 35.0% | |
| CAAAGCTCTCACAAAACAAG+AGG | + | chr7_3:30587161-30587180 | Msa1100570:CDS | 40.0% | |
| AAGAAATATCCCCGGTCATA+GGG | - | chr7_3:30587203-30587222 | None:intergenic | 40.0% | |
| AAAGAAATATCCCCGGTCAT+AGG | - | chr7_3:30587204-30587223 | None:intergenic | 40.0% | |
| GCACTCTTGAAGGATATAAC+AGG | - | chr7_3:30587410-30587429 | None:intergenic | 40.0% | |
| TTTACTTGGAAAGGGAAAGG+TGG | - | chr7_3:30587458-30587477 | None:intergenic | 40.0% | |
| ! | CAAGATGGCTTTACTTGGAA+AGG | - | chr7_3:30587467-30587486 | None:intergenic | 40.0% |
| ATATGTCATAGAAGGCTGGA+AGG | + | chr7_3:30587568-30587587 | Msa1100570:intron | 40.0% | |
| AGCTCTCACAAAACAAGAGG+TGG | + | chr7_3:30587164-30587183 | Msa1100570:CDS | 45.0% | |
| AGAAATATCCCCGGTCATAG+GGG | - | chr7_3:30587202-30587221 | None:intergenic | 45.0% | |
| TCGCAGTAGTCTTCTTCGAT+GGG | - | chr7_3:30587242-30587261 | None:intergenic | 45.0% | |
| TTCGCAGTAGTCTTCTTCGA+TGG | - | chr7_3:30587243-30587262 | None:intergenic | 45.0% | |
| TATTGCTTCCCAGGAACACA+TGG | - | chr7_3:30587281-30587300 | None:intergenic | 45.0% | |
| TGGGAAGCAATACTACGAGA+GGG | + | chr7_3:30587289-30587308 | Msa1100570:CDS | 45.0% | |
| GAAGGATATAACAGGGTCTG+TGG | - | chr7_3:30587402-30587421 | None:intergenic | 45.0% | |
| GGCTTTACTTGGAAAGGGAA+AGG | - | chr7_3:30587461-30587480 | None:intergenic | 45.0% | |
| TTTAGTCAGAGGAGGTTTCC+AGG | + | chr7_3:30587530-30587549 | Msa1100570:intron | 45.0% | |
| AGAGGAGGTTTCCAGGATAT+GGG | + | chr7_3:30587537-30587556 | Msa1100570:intron | 45.0% | |
| TATGTGGTCATCCCATATCC+TGG | - | chr7_3:30587551-30587570 | None:intergenic | 45.0% | |
| CCAGCCTTCTATGACATATG+TGG | - | chr7_3:30587567-30587586 | None:intergenic | 45.0% | |
| CCACATATGTCATAGAAGGC+TGG | + | chr7_3:30587564-30587583 | Msa1100570:intron | 45.0% | |
| GATGATGAGTGTGAGGGGAA+AGG | + | chr7_3:30587032-30587051 | Msa1100570:CDS | 50.0% | |
| AAGCTGCCAAAACATTCCCC+AGG | + | chr7_3:30587081-30587100 | Msa1100570:CDS | 50.0% | |
| GCCAAAACATTCCCCAGGTT+CGG | + | chr7_3:30587086-30587105 | Msa1100570:CDS | 50.0% | |
| CTCTCGTAGTATTGCTTCCC+AGG | - | chr7_3:30587290-30587309 | None:intergenic | 50.0% | |
| CTGGGAAGCAATACTACGAG+AGG | + | chr7_3:30587288-30587307 | Msa1100570:CDS | 50.0% | |
| GGGAAGCAATACTACGAGAG+GGG | + | chr7_3:30587290-30587309 | Msa1100570:CDS | 50.0% | |
| GGTCTGTGGCAATGAGATCT+GGG | - | chr7_3:30587388-30587407 | None:intergenic | 50.0% | |
| ACTTGGAAAGGGAAAGGTGG+AGG | - | chr7_3:30587455-30587474 | None:intergenic | 50.0% | |
| ! | CGTGGCAAGATGGCTTTACT+TGG | - | chr7_3:30587472-30587491 | None:intergenic | 50.0% |
| GTTATAGCGTCGTGGCAAGA+TGG | - | chr7_3:30587482-30587501 | None:intergenic | 50.0% | |
| TCTTGCCACGACGCTATAAC+CGG | + | chr7_3:30587482-30587501 | Msa1100570:intron | 50.0% | |
| ATCAGTAGGGATCCATCGTC+CGG | - | chr7_3:30587504-30587523 | None:intergenic | 50.0% | |
| CAGAGGAGGTTTCCAGGATA+TGG | + | chr7_3:30587536-30587555 | Msa1100570:intron | 50.0% | |
| TCGCGACGATGATGAGTGTG+AGG | + | chr7_3:30587025-30587044 | Msa1100570:CDS | 55.0% | |
| CGCGACGATGATGAGTGTGA+GGG | + | chr7_3:30587026-30587045 | Msa1100570:CDS | 55.0% | |
| GCGACGATGATGAGTGTGAG+GGG | + | chr7_3:30587027-30587046 | Msa1100570:CDS | 55.0% | |
| ! | GCCGAACCTGGGGAATGTTT+TGG | - | chr7_3:30587090-30587109 | None:intergenic | 55.0% |
| TCTCCTTCGTTGCCGAACCT+GGG | - | chr7_3:30587101-30587120 | None:intergenic | 55.0% | |
| CACCTCTTAGCCCCTATGAC+CGG | + | chr7_3:30587189-30587208 | Msa1100570:CDS | 55.0% | |
| ACCTCTTAGCCCCTATGACC+GGG | + | chr7_3:30587190-30587209 | Msa1100570:CDS | 55.0% | |
| AGGGGTCCGCTTCAGATCAA+AGG | + | chr7_3:30587308-30587327 | Msa1100570:CDS | 55.0% | |
| GGGGTCCGCTTCAGATCAAA+GGG | + | chr7_3:30587309-30587328 | Msa1100570:CDS | 55.0% | |
| GGGTCTGTGGCAATGAGATC+TGG | - | chr7_3:30587389-30587408 | None:intergenic | 55.0% | |
| ATCGTCCGGTTATAGCGTCG+TGG | - | chr7_3:30587490-30587509 | None:intergenic | 55.0% | |
| ACGACGCTATAACCGGACGA+TGG | + | chr7_3:30587489-30587508 | Msa1100570:intron | 55.0% | |
| TTCCCCAGGTTCGGCAACGA+AGG | + | chr7_3:30587095-30587114 | Msa1100570:CDS | 60.0% | |
| CTCCTTCGTTGCCGAACCTG+GGG | - | chr7_3:30587100-30587119 | None:intergenic | 60.0% | |
| GTCTCCTTCGTTGCCGAACC+TGG | - | chr7_3:30587102-30587121 | None:intergenic | 60.0% | |
| CCTCTTAGCCCCTATGACCG+GGG | + | chr7_3:30587191-30587210 | Msa1100570:CDS | 60.0% | |
| CCCCGGTCATAGGGGCTAAG+AGG | - | chr7_3:30587194-30587213 | None:intergenic | 65.0% | |
| GGCTGGAAGGAATGCGCGAC+CGG | + | chr7_3:30587581-30587600 | Msa1100570:CDS | 65.0% | |
| GCTGGAAGGAATGCGCGACC+GGG | + | chr7_3:30587582-30587601 | Msa1100570:CDS | 65.0% | |
| GGAAGGAATGCGCGACCGGG+TGG | + | chr7_3:30587585-30587604 | Msa1100570:CDS | 70.0% | |
| GGAATGCGCGACCGGGTGGC+TGG | + | chr7_3:30587589-30587608 | Msa1100570:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 30587014 | 30587617 | 30587014 | ID=Msa1100570;Name=Msa1100570 |
| chr7_3 | mRNA | 30587014 | 30587617 | 30587014 | ID=Msa1100570-mRNA-1;Parent=Msa1100570;Name=Msa1100570-mRNA-1;_AED=0.37;_eAED=0.42;_QI=0|0|0|1|1|1|2|0|165 |
| chr7_3 | exon | 30587014 | 30587472 | 30587014 | ID=Msa1100570-mRNA-1:exon:6483;Parent=Msa1100570-mRNA-1 |
| chr7_3 | exon | 30587579 | 30587617 | 30587579 | ID=Msa1100570-mRNA-1:exon:6484;Parent=Msa1100570-mRNA-1 |
| chr7_3 | CDS | 30587014 | 30587472 | 30587014 | ID=Msa1100570-mRNA-1:cds;Parent=Msa1100570-mRNA-1 |
| chr7_3 | CDS | 30587579 | 30587617 | 30587579 | ID=Msa1100570-mRNA-1:cds;Parent=Msa1100570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
