Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136050 | TKY75531.1 | 65.584 | 154 | 48 | 2 | 1 | 151 | 70 | 221 | 7.81e-65 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136050 | sp|P21226|CHI2_PEA | 62.338 | 154 | 53 | 2 | 1 | 151 | 80 | 231 | 1.78e-63 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136050 | A0A1L2BU67 | 64.286 | 154 | 50 | 2 | 1 | 151 | 37 | 188 | 5.82e-65 | 207 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032130 | Msa1136050 | 0.802282 | 6.042291e-49 | -8.615850e-47 |
| Msa0060380 | Msa1136050 | 0.807159 | 5.790453e-50 | -8.615850e-47 |
| Msa0605480 | Msa1136050 | 0.824733 | 6.877236e-54 | -8.615850e-47 |
| Msa0611950 | Msa1136050 | 0.805568 | 1.253494e-49 | -8.615850e-47 |
| Msa0629720 | Msa1136050 | 0.808573 | 2.898208e-50 | -8.615850e-47 |
| Msa0646440 | Msa1136050 | 0.817111 | 3.905555e-52 | -8.615850e-47 |
| Msa0667600 | Msa1136050 | 0.807573 | 4.731656e-50 | -8.615850e-47 |
| Msa0671400 | Msa1136050 | 0.800759 | 1.239571e-48 | -8.615850e-47 |
| Msa0694790 | Msa1136050 | 0.802842 | 4.631095e-49 | -8.615850e-47 |
| Msa0708020 | Msa1136050 | 0.821772 | 3.380102e-53 | -8.615850e-47 |
| Msa0716980 | Msa1136050 | 0.810008 | 1.426826e-50 | -8.615850e-47 |
| Msa0758150 | Msa1136050 | 0.804940 | 1.696794e-49 | -8.615850e-47 |
| Msa0768670 | Msa1136050 | 0.807863 | 4.106554e-50 | -8.615850e-47 |
| Msa0777250 | Msa1136050 | 0.823851 | 1.108956e-53 | -8.615850e-47 |
| Msa0798840 | Msa1136050 | 0.811172 | 7.996147e-51 | -8.615850e-47 |
| Msa0814230 | Msa1136050 | 0.833232 | 6.003825e-56 | -8.615850e-47 |
| Msa0817100 | Msa1136050 | 0.802512 | 5.416467e-49 | -8.615850e-47 |
| Msa0147680 | Msa1136050 | 0.806736 | 7.115402e-50 | -8.615850e-47 |
| Msa0160580 | Msa1136050 | 0.804839 | 1.781722e-49 | -8.615850e-47 |
| Msa0185690 | Msa1136050 | 0.801873 | 7.331781e-49 | -8.615850e-47 |
| Msa0203880 | Msa1136050 | 0.831793 | 1.365066e-55 | -8.615850e-47 |
| Msa0206370 | Msa1136050 | 0.846372 | 2.264109e-59 | -8.615850e-47 |
| Msa0235080 | Msa1136050 | 0.804963 | 1.678469e-49 | -8.615850e-47 |
| Msa0374560 | Msa1136050 | 0.800542 | 1.372590e-48 | -8.615850e-47 |
| Msa0386560 | Msa1136050 | 0.818075 | 2.368770e-52 | -8.615850e-47 |
| Msa0401500 | Msa1136050 | 0.800248 | 1.575615e-48 | -8.615850e-47 |
| Msa0425950 | Msa1136050 | 0.827319 | 1.670464e-54 | -8.615850e-47 |
| Msa0426030 | Msa1136050 | 0.836199 | 1.076133e-56 | -8.615850e-47 |
| Msa0426170 | Msa1136050 | 0.813680 | 2.264130e-51 | -8.615850e-47 |
| Msa0448230 | Msa1136050 | 0.815236 | 1.024924e-51 | -8.615850e-47 |
| Msa0472390 | Msa1136050 | 0.818288 | 2.120189e-52 | -8.615850e-47 |
| Msa0481670 | Msa1136050 | 0.814792 | 1.286488e-51 | -8.615850e-47 |
| Msa0987020 | Msa1136050 | 0.812515 | 4.077763e-51 | -8.615850e-47 |
| Msa0996980 | Msa1136050 | 0.803480 | 3.416468e-49 | -8.615850e-47 |
| Msa1007930 | Msa1136050 | 0.804541 | 2.055895e-49 | -8.615850e-47 |
| Msa1021620 | Msa1136050 | 0.802272 | 6.070929e-49 | -8.615850e-47 |
| Msa1078300 | Msa1136050 | 0.803598 | 3.230381e-49 | -8.615850e-47 |
| Msa1085560 | Msa1136050 | 0.812559 | 3.988742e-51 | -8.615850e-47 |
| Msa1100560 | Msa1136050 | 0.872306 | 3.519772e-67 | -8.615850e-47 |
| Msa1100570 | Msa1136050 | 0.854707 | 1.028622e-61 | -8.615850e-47 |
| Msa0247050 | Msa1136050 | 0.855314 | 6.855189e-62 | -8.615850e-47 |
| Msa0258010 | Msa1136050 | 0.804710 | 1.895974e-49 | -8.615850e-47 |
| Msa0260980 | Msa1136050 | 0.810073 | 1.382016e-50 | -8.615850e-47 |
| Msa0270390 | Msa1136050 | 0.802511 | 5.418040e-49 | -8.615850e-47 |
| Msa0285420 | Msa1136050 | 0.814198 | 1.740457e-51 | -8.615850e-47 |
| Msa0324220 | Msa1136050 | 0.815573 | 8.625281e-52 | -8.615850e-47 |
| Msa0336430 | Msa1136050 | 0.800189 | 1.619445e-48 | -8.615850e-47 |
| Msa0336460 | Msa1136050 | 0.812982 | 3.223815e-51 | -8.615850e-47 |
| Msa0336520 | Msa1136050 | 0.806251 | 9.006666e-50 | -8.615850e-47 |
| Msa0340270 | Msa1136050 | 0.800684 | 1.284265e-48 | -8.615850e-47 |
| Msa0354670 | Msa1136050 | 0.806188 | 9.285338e-50 | -8.615850e-47 |
| Msa1136050 | Msa1136060 | 0.879849 | 8.900689e-70 | -8.615850e-47 |
| Msa1136050 | Msa1143250 | 0.812260 | 4.636283e-51 | -8.615850e-47 |
| Msa1136050 | Msa1179190 | 0.826596 | 2.486915e-54 | -8.615850e-47 |
| Msa1136050 | Msa1217890 | 0.821762 | 3.397917e-53 | -8.615850e-47 |
| Msa1136050 | Msa1220720 | 0.837596 | 4.736273e-57 | -8.615850e-47 |
| Msa1136050 | Msa1233620 | 0.821803 | 3.325053e-53 | -8.615850e-47 |
| Msa1136050 | Msa1241960 | 0.800905 | 1.157507e-48 | -8.615850e-47 |
| Msa1136050 | Msa1242160 | 0.800845 | 1.190468e-48 | -8.615850e-47 |
| Msa1136050 | Msa1250660 | 0.816196 | 6.263833e-52 | -8.615850e-47 |
| Msa1136050 | Msa1255710 | 0.826798 | 2.225745e-54 | -8.615850e-47 |
| Msa1136050 | Msa1265570 | 0.839850 | 1.238155e-57 | -8.615850e-47 |
| Msa1136050 | Msa1269050 | 0.819720 | 1.001315e-52 | -8.615850e-47 |
| Msa1136050 | Msa1275840 | 0.824747 | 6.825619e-54 | -8.615850e-47 |
| Msa1136050 | Msa1283980 | 0.830645 | 2.613483e-55 | -8.615850e-47 |
| Msa1136050 | Msa1284020 | 0.807464 | 4.991905e-50 | -8.615850e-47 |
| Msa1136050 | Msa1314020 | 0.832580 | 8.718920e-56 | -8.615850e-47 |
| Msa1136050 | Msa1322960 | 0.802889 | 4.527865e-49 | -8.615850e-47 |
| Msa1136050 | Msa1322980 | 0.831490 | 1.620872e-55 | -8.615850e-47 |
| Msa1136050 | Msa1323120 | 0.814047 | 1.879265e-51 | -8.615850e-47 |
| Msa1136050 | Msa1334670 | 0.842780 | 2.098442e-58 | -8.615850e-47 |
| Msa1136050 | Msa1350490 | 0.859221 | 4.803936e-63 | -8.615850e-47 |
| Msa1136050 | Msa1362590 | 0.825037 | 5.831351e-54 | -8.615850e-47 |
| Msa1136050 | Msa1365230 | 0.840279 | 9.569493e-58 | -8.615850e-47 |
| Msa1136050 | Msa1378950 | 0.802051 | 6.740324e-49 | -8.615850e-47 |
| Msa1136050 | Msa1381010 | 0.818467 | 1.930834e-52 | -8.615850e-47 |
| Msa1136050 | Msa1398490 | 0.803012 | 4.271414e-49 | -8.615850e-47 |
| Msa1136050 | Msa1407810 | 0.811263 | 7.639115e-51 | -8.615850e-47 |
| Msa1136050 | Msa1409600 | 0.824275 | 8.818225e-54 | -8.615850e-47 |
| Msa1136050 | Msa1417220 | 0.811590 | 6.489584e-51 | -8.615850e-47 |
| Msa1136050 | Msa1434700 | 0.812216 | 4.741050e-51 | -8.615850e-47 |
| Msa1136050 | Msa1437780 | 0.811101 | 8.285166e-51 | -8.615850e-47 |
| Msa1136050 | Msa1445530 | 0.807176 | 5.744460e-50 | -8.615850e-47 |
| Msa1136050 | Msa1445900 | 0.829639 | 4.600749e-55 | -8.615850e-47 |
| Msa1136050 | Msa1459610 | 0.803733 | 3.028158e-49 | -8.615850e-47 |
| Msa0487100 | Msa1136050 | 0.810232 | 1.276696e-50 | -8.615850e-47 |
| Msa0487110 | Msa1136050 | 0.803369 | 3.602158e-49 | -8.615850e-47 |
| Msa0496380 | Msa1136050 | 0.814007 | 1.917692e-51 | -8.615850e-47 |
| Msa0523550 | Msa1136050 | 0.818329 | 2.074544e-52 | -8.615850e-47 |
| Msa0523720 | Msa1136050 | 0.800125 | 1.668734e-48 | -8.615850e-47 |
| Msa0531030 | Msa1136050 | 0.847803 | 9.174681e-60 | -8.615850e-47 |
| Msa0531080 | Msa1136050 | 0.842559 | 2.402308e-58 | -8.615850e-47 |
| Msa0540640 | Msa1136050 | 0.800262 | 1.565323e-48 | -8.615850e-47 |
| Msa0549970 | Msa1136050 | 0.820960 | 5.203152e-53 | -8.615850e-47 |
| Msa0556720 | Msa1136050 | 0.815285 | 9.999695e-52 | -8.615850e-47 |
| Msa0567330 | Msa1136050 | 0.808024 | 3.794822e-50 | -8.615850e-47 |
| Msa0567570 | Msa1136050 | 0.813695 | 2.246602e-51 | -8.615850e-47 |
| Msa0576320 | Msa1136050 | 0.815888 | 7.340058e-52 | -8.615850e-47 |
| Msa0587920 | Msa1136050 | 0.838729 | 2.418576e-57 | -8.615850e-47 |
| Msa0589460 | Msa1136050 | 0.814193 | 1.745076e-51 | -8.615850e-47 |
| Msa0853080 | Msa1136050 | 0.805639 | 1.211115e-49 | -8.615850e-47 |
| Msa0896920 | Msa1136050 | 0.817044 | 4.043423e-52 | -8.615850e-47 |
| Msa0913550 | Msa1136050 | 0.818251 | 2.161267e-52 | -8.615850e-47 |
| Msa0951150 | Msa1136050 | 0.801101 | 1.055302e-48 | -8.615850e-47 |
| Msa0968180 | Msa1136050 | 0.817770 | 2.775817e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136050 | MtrunA17_Chr3g0145981 | 63.636 | 154 | 52 | 2 | 1 | 151 | 103 | 255 | 3.61e-66 | 205 |
| Msa1136050 | MtrunA17_Chr8g0370851 | 52.381 | 147 | 65 | 3 | 1 | 144 | 92 | 236 | 2.04e-51 | 166 |
| Msa1136050 | MtrunA17_Chr8g0370821 | 51.701 | 147 | 66 | 3 | 1 | 144 | 103 | 247 | 1.28e-49 | 162 |
| Msa1136050 | MtrunA17_Chr8g0370831 | 48.299 | 147 | 58 | 2 | 1 | 144 | 94 | 225 | 6.74e-43 | 144 |
| Msa1136050 | MtrunA17_Chr7g0270841 | 43.226 | 155 | 83 | 3 | 1 | 151 | 48 | 201 | 5.40e-40 | 135 |
| Msa1136050 | MtrunA17_Chr2g0329791 | 39.716 | 141 | 72 | 3 | 7 | 145 | 98 | 227 | 2.20e-29 | 108 |
| Msa1136050 | MtrunA17_Chr2g0329781 | 38.298 | 141 | 74 | 3 | 7 | 145 | 78 | 207 | 2.34e-29 | 108 |
| Msa1136050 | MtrunA17_Chr2g0294721 | 34.839 | 155 | 92 | 5 | 1 | 148 | 68 | 220 | 1.12e-23 | 94.4 |
| Msa1136050 | MtrunA17_Chr1g0206111 | 33.775 | 151 | 92 | 4 | 1 | 144 | 75 | 224 | 1.13e-21 | 89.0 |
| Msa1136050 | MtrunA17_Chr7g0221751 | 33.113 | 151 | 93 | 4 | 1 | 144 | 72 | 221 | 1.99e-21 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1136050 | AT3G12500.1 | 60.390 | 154 | 57 | 2 | 1 | 151 | 98 | 250 | 2.33e-62 | 195 |
| Msa1136050 | AT4G01700.1 | 47.368 | 152 | 75 | 3 | 4 | 151 | 53 | 203 | 1.02e-44 | 148 |
| Msa1136050 | AT1G02360.1 | 42.581 | 155 | 84 | 3 | 1 | 151 | 42 | 195 | 2.13e-39 | 134 |
| Msa1136050 | AT1G02360.3 | 43.421 | 152 | 81 | 3 | 4 | 151 | 97 | 247 | 4.97e-39 | 135 |
| Msa1136050 | AT1G02360.2 | 43.421 | 152 | 81 | 3 | 4 | 151 | 91 | 241 | 5.47e-39 | 134 |
| Msa1136050 | AT3G54420.1 | 41.060 | 151 | 76 | 3 | 8 | 156 | 90 | 229 | 1.50e-33 | 119 |
| Msa1136050 | AT2G43590.1 | 36.306 | 157 | 83 | 4 | 2 | 156 | 80 | 221 | 3.65e-33 | 118 |
| Msa1136050 | AT2G43580.1 | 33.333 | 156 | 89 | 2 | 2 | 156 | 81 | 222 | 6.06e-30 | 110 |
| Msa1136050 | AT2G43610.1 | 36.129 | 155 | 83 | 3 | 2 | 156 | 100 | 238 | 9.42e-28 | 104 |
| Msa1136050 | AT2G43620.1 | 36.129 | 155 | 83 | 3 | 2 | 156 | 102 | 240 | 5.48e-27 | 102 |
| Msa1136050 | AT1G56680.1 | 38.926 | 149 | 74 | 4 | 2 | 149 | 96 | 228 | 8.77e-26 | 99.4 |
| Msa1136050 | AT1G56680.2 | 39.860 | 143 | 69 | 4 | 2 | 143 | 119 | 245 | 1.47e-25 | 99.4 |
| Msa1136050 | AT2G43600.1 | 35.897 | 156 | 82 | 4 | 2 | 156 | 92 | 230 | 5.57e-24 | 94.7 |
| Msa1136050 | AT1G05850.1 | 35.762 | 151 | 89 | 4 | 1 | 144 | 72 | 221 | 8.55e-24 | 94.7 |
| Msa1136050 | AT1G05850.2 | 35.762 | 151 | 89 | 4 | 1 | 144 | 72 | 221 | 8.55e-24 | 94.7 |
| Msa1136050 | AT2G43600.2 | 35.897 | 156 | 82 | 4 | 2 | 156 | 113 | 251 | 9.70e-24 | 94.4 |
| Msa1136050 | AT2G43570.1 | 36.242 | 149 | 72 | 6 | 1 | 143 | 89 | 220 | 8.48e-23 | 91.7 |
| Msa1136050 | AT3G16920.1 | 32.903 | 155 | 95 | 5 | 1 | 148 | 80 | 232 | 1.67e-21 | 89.0 |
| Msa1136050 | AT3G16920.2 | 32.903 | 155 | 95 | 5 | 1 | 148 | 104 | 256 | 2.11e-21 | 89.0 |
| Msa1136050 | AT3G47540.1 | 27.152 | 151 | 81 | 6 | 8 | 156 | 48 | 171 | 3.33e-11 | 59.3 |
| Msa1136050 | AT3G47540.2 | 27.517 | 149 | 79 | 6 | 10 | 156 | 50 | 171 | 4.88e-11 | 59.7 |
Find 44 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGAGTGCTATATGGTTT+TGG | 0.289569 | 7_4:-4005234 | Msa1136050:CDS |
| TCTAAATTTCCATGTGTTCC+TGG | 0.293914 | 7_4:-4005385 | Msa1136050:CDS |
| GTCTCCTTCATTGCCGAACC+TGG | 0.310175 | 7_4:+4005555 | None:intergenic |
| ATCAAAGGGAATAAAATATA+TGG | 0.311345 | 7_4:-4005331 | Msa1136050:CDS |
| GGAGAATGTGGAAGTATAAT+AGG | 0.323922 | 7_4:-4005310 | Msa1136050:CDS |
| GCCGAACCTGGGGAATGTTT+TGG | 0.347989 | 7_4:+4005567 | None:intergenic |
| GGGTCTGTGGCAATGAGATC+TGG | 0.352495 | 7_4:+4005268 | None:intergenic |
| GCACTCTTGAAGGATATAAC+AGG | 0.377927 | 7_4:+4005247 | None:intergenic |
| TATCCTTCAAGAGTGCTATA+TGG | 0.418078 | 7_4:-4005240 | Msa1136050:CDS |
| AAACCATATAGCACTCTTGA+AGG | 0.434167 | 7_4:+4005237 | None:intergenic |
| GCCAAAACATTCCCCAGGTT+CGG | 0.455985 | 7_4:-4005568 | Msa1136050:CDS |
| CTAAATTTCCATGTGTTCCT+GGG | 0.462737 | 7_4:-4005384 | Msa1136050:CDS |
| ACACATGGAAATTTAGAGCT+TGG | 0.463623 | 7_4:+4005391 | None:intergenic |
| TTCGCAGTAGTCTTCTTCGA+TGG | 0.468797 | 7_4:+4005414 | None:intergenic |
| CTCTCGTAGTATTGCTTCCC+AGG | 0.474080 | 7_4:+4005367 | None:intergenic |
| CAAGATGGCTTTACTTGGAA+AGG | 0.478902 | 7_4:+4005190 | None:intergenic |
| TTCCCCAGGTTCGGCAATGA+AGG | 0.485902 | 7_4:-4005559 | Msa1136050:CDS |
| TCGCAGTAGTCTTCTTCGAT+GGG | 0.491948 | 7_4:+4005415 | None:intergenic |
| AGAGGAGGTTTCCAGGATAT+GGG | 0.498919 | 7_4:-4005117 | Msa1136050:intron |
| AAGATGGCTTTACTTGGAAA+GGG | 0.503243 | 7_4:+4005191 | None:intergenic |
| TTATTCCCTTTGATCTGAAG+CGG | 0.516176 | 7_4:+4005340 | None:intergenic |
| AATAAAATATATGGAGAATG+TGG | 0.517331 | 7_4:-4005322 | Msa1136050:CDS |
| AGGGGTCCGCTTCAGATCAA+AGG | 0.525246 | 7_4:-4005346 | Msa1136050:CDS |
| TCTCCTTCATTGCCGAACCT+GGG | 0.529122 | 7_4:+4005556 | None:intergenic |
| GGCTTTACTTGGAAAGGGAA+AGG | 0.540330 | 7_4:+4005196 | None:intergenic |
| GGTCTGTGGCAATGAGATCT+GGG | 0.547304 | 7_4:+4005269 | None:intergenic |
| ACTTGGAAAGGGAAAGGTGG+AGG | 0.555116 | 7_4:+4005202 | None:intergenic |
| GGGGTCCGCTTCAGATCAAA+GGG | 0.557701 | 7_4:-4005345 | Msa1136050:CDS |
| AAGCTGCCAAAACATTCCCC+AGG | 0.566465 | 7_4:-4005573 | Msa1136050:CDS |
| GATGATGAGTGTGAGGGGAA+AGG | 0.572756 | 7_4:-4005622 | Msa1136050:CDS |
| AGCTCTCACAAAACAAGAGG+TGG | 0.574719 | 7_4:-4005490 | Msa1136050:CDS |
| CTCCTTCATTGCCGAACCTG+GGG | 0.576604 | 7_4:+4005557 | None:intergenic |
| TATTGCTTCCCAGGAACACA+TGG | 0.580157 | 7_4:+4005376 | None:intergenic |
| CACTCTTGAAGGATATAACA+GGG | 0.603547 | 7_4:+4005248 | None:intergenic |
| CGCGACGATGATGAGTGTGA+GGG | 0.608511 | 7_4:-4005628 | Msa1136050:CDS |
| AGCTTCAACAAATGCTTCGT+AGG | 0.613992 | 7_4:+4005591 | None:intergenic |
| TCGCGACGATGATGAGTGTG+AGG | 0.615130 | 7_4:-4005629 | Msa1136050:CDS |
| GAAGGATATAACAGGGTCTG+TGG | 0.619235 | 7_4:+4005255 | None:intergenic |
| CTGGGAAGCAATACTACGAG+AGG | 0.622203 | 7_4:-4005366 | Msa1136050:CDS |
| CAAAGCTCTCACAAAACAAG+AGG | 0.630156 | 7_4:-4005493 | Msa1136050:CDS |
| TGGGAAGCAATACTACGAGA+GGG | 0.631128 | 7_4:-4005365 | Msa1136050:CDS |
| TTTACTTGGAAAGGGAAAGG+TGG | 0.645661 | 7_4:+4005199 | None:intergenic |
| GCGACGATGATGAGTGTGAG+GGG | 0.672599 | 7_4:-4005627 | Msa1136050:CDS |
| GGGAAGCAATACTACGAGAG+GGG | 0.685899 | 7_4:-4005364 | Msa1136050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAAGGGAATAAAATATA+TGG | - | chr7_4:4005422-4005441 | Msa1136050:CDS | 20.0% |
| !! | AATAAAATATATGGAGAATG+TGG | - | chr7_4:4005431-4005450 | Msa1136050:CDS | 20.0% |
| ! | AAGAAATATCCCCAAAAATA+GGG | + | chr7_4:4005302-4005321 | None:intergenic | 25.0% |
| ! | AAAGAAATATCCCCAAAAAT+AGG | + | chr7_4:4005303-4005322 | None:intergenic | 25.0% |
| ! | GACTAAAATCAAAATCAGTA+GGG | + | chr7_4:4005616-4005635 | None:intergenic | 25.0% |
| ! | TGACTAAAATCAAAATCAGT+AGG | + | chr7_4:4005617-4005636 | None:intergenic | 25.0% |
| AGAAATATCCCCAAAAATAG+GGG | + | chr7_4:4005301-4005320 | None:intergenic | 30.0% | |
| !!! | CTGATTTTGATTTTAGTCAG+AGG | - | chr7_4:4005618-4005637 | Msa1136050:CDS | 30.0% |
| !!! | ATTTTGATTTTAGTCAGAGG+AGG | - | chr7_4:4005621-4005640 | Msa1136050:CDS | 30.0% |
| ! | ACACATGGAAATTTAGAGCT+TGG | + | chr7_4:4005365-4005384 | None:intergenic | 35.0% |
| TCTAAATTTCCATGTGTTCC+TGG | - | chr7_4:4005368-4005387 | Msa1136050:CDS | 35.0% | |
| CTAAATTTCCATGTGTTCCT+GGG | - | chr7_4:4005369-4005388 | Msa1136050:CDS | 35.0% | |
| TTATTCCCTTTGATCTGAAG+CGG | + | chr7_4:4005416-4005435 | None:intergenic | 35.0% | |
| ! | GGAGAATGTGGAAGTATAAT+AGG | - | chr7_4:4005443-4005462 | Msa1136050:CDS | 35.0% |
| CACTCTTGAAGGATATAACA+GGG | + | chr7_4:4005508-4005527 | None:intergenic | 35.0% | |
| !! | TATCCTTCAAGAGTGCTATA+TGG | - | chr7_4:4005513-4005532 | Msa1136050:CDS | 35.0% |
| AAACCATATAGCACTCTTGA+AGG | + | chr7_4:4005519-4005538 | None:intergenic | 35.0% | |
| !!! | TCAAGAGTGCTATATGGTTT+TGG | - | chr7_4:4005519-4005538 | Msa1136050:CDS | 35.0% |
| ! | AAGATGGCTTTACTTGGAAA+GGG | + | chr7_4:4005565-4005584 | None:intergenic | 35.0% |
| AGCTTCAACAAATGCTTCGT+AGG | + | chr7_4:4005165-4005184 | None:intergenic | 40.0% | |
| !!! | AGAGACAGTGCTGCTTTTTT+TGG | - | chr7_4:4005236-4005255 | Msa1136050:CDS | 40.0% |
| CAAAGCTCTCACAAAACAAG+AGG | - | chr7_4:4005260-4005279 | Msa1136050:CDS | 40.0% | |
| !! | ACCTCTTAGCCCCTATTTTT+GGG | - | chr7_4:4005289-4005308 | Msa1136050:CDS | 40.0% |
| GCACTCTTGAAGGATATAAC+AGG | + | chr7_4:4005509-4005528 | None:intergenic | 40.0% | |
| TTTACTTGGAAAGGGAAAGG+TGG | + | chr7_4:4005557-4005576 | None:intergenic | 40.0% | |
| ! | CAAGATGGCTTTACTTGGAA+AGG | + | chr7_4:4005566-4005585 | None:intergenic | 40.0% |
| AGCTCTCACAAAACAAGAGG+TGG | - | chr7_4:4005263-4005282 | Msa1136050:CDS | 45.0% | |
| ! | CACCTCTTAGCCCCTATTTT+TGG | - | chr7_4:4005288-4005307 | Msa1136050:CDS | 45.0% |
| !!! | CCTCTTAGCCCCTATTTTTG+GGG | - | chr7_4:4005290-4005309 | Msa1136050:CDS | 45.0% |
| TCGCAGTAGTCTTCTTCGAT+GGG | + | chr7_4:4005341-4005360 | None:intergenic | 45.0% | |
| TTCGCAGTAGTCTTCTTCGA+TGG | + | chr7_4:4005342-4005361 | None:intergenic | 45.0% | |
| TATTGCTTCCCAGGAACACA+TGG | + | chr7_4:4005380-4005399 | None:intergenic | 45.0% | |
| TGGGAAGCAATACTACGAGA+GGG | - | chr7_4:4005388-4005407 | Msa1136050:CDS | 45.0% | |
| GAAGGATATAACAGGGTCTG+TGG | + | chr7_4:4005501-4005520 | None:intergenic | 45.0% | |
| GGCTTTACTTGGAAAGGGAA+AGG | + | chr7_4:4005560-4005579 | None:intergenic | 45.0% | |
| ! | CATGGCAAGATGGCTTTACT+TGG | + | chr7_4:4005571-4005590 | None:intergenic | 45.0% |
| GTTATAGCGTCATGGCAAGA+TGG | + | chr7_4:4005581-4005600 | None:intergenic | 45.0% | |
| TCTTGCCATGACGCTATAAC+CGG | - | chr7_4:4005581-4005600 | Msa1136050:CDS | 45.0% | |
| TTTAGTCAGAGGAGGTTTCC+AGG | - | chr7_4:4005629-4005648 | Msa1136050:CDS | 45.0% | |
| AGAGGAGGTTTCCAGGATAT+GGG | - | chr7_4:4005636-4005655 | Msa1136050:CDS | 45.0% | |
| GATGATGAGTGTGAGGGGAA+AGG | - | chr7_4:4005131-4005150 | Msa1136050:intron | 50.0% | |
| AAGCTGCCAAAACATTCCCC+AGG | - | chr7_4:4005180-4005199 | Msa1136050:intron | 50.0% | |
| GCCAAAACATTCCCCAGGTT+CGG | - | chr7_4:4005185-4005204 | Msa1136050:intron | 50.0% | |
| TCTCCTTCATTGCCGAACCT+GGG | + | chr7_4:4005200-4005219 | None:intergenic | 50.0% | |
| CCCCAAAAATAGGGGCTAAG+AGG | + | chr7_4:4005293-4005312 | None:intergenic | 50.0% | |
| CTCTCGTAGTATTGCTTCCC+AGG | + | chr7_4:4005389-4005408 | None:intergenic | 50.0% | |
| CTGGGAAGCAATACTACGAG+AGG | - | chr7_4:4005387-4005406 | Msa1136050:CDS | 50.0% | |
| GGGAAGCAATACTACGAGAG+GGG | - | chr7_4:4005389-4005408 | Msa1136050:CDS | 50.0% | |
| GGTCTGTGGCAATGAGATCT+GGG | + | chr7_4:4005487-4005506 | None:intergenic | 50.0% | |
| ACTTGGAAAGGGAAAGGTGG+AGG | + | chr7_4:4005554-4005573 | None:intergenic | 50.0% | |
| ATCGTCCGGTTATAGCGTCA+TGG | + | chr7_4:4005589-4005608 | None:intergenic | 50.0% | |
| ATGACGCTATAACCGGACGA+TGG | - | chr7_4:4005588-4005607 | Msa1136050:CDS | 50.0% | |
| ATCAGTAGGGATCCATCGTC+CGG | + | chr7_4:4005603-4005622 | None:intergenic | 50.0% | |
| CAGAGGAGGTTTCCAGGATA+TGG | - | chr7_4:4005635-4005654 | Msa1136050:CDS | 50.0% | |
| TCGCGACGATGATGAGTGTG+AGG | - | chr7_4:4005124-4005143 | Msa1136050:intron | 55.0% | |
| CGCGACGATGATGAGTGTGA+GGG | - | chr7_4:4005125-4005144 | Msa1136050:intron | 55.0% | |
| GCGACGATGATGAGTGTGAG+GGG | - | chr7_4:4005126-4005145 | Msa1136050:intron | 55.0% | |
| ! | GCCGAACCTGGGGAATGTTT+TGG | + | chr7_4:4005189-4005208 | None:intergenic | 55.0% |
| TTCCCCAGGTTCGGCAATGA+AGG | - | chr7_4:4005194-4005213 | Msa1136050:intron | 55.0% | |
| CTCCTTCATTGCCGAACCTG+GGG | + | chr7_4:4005199-4005218 | None:intergenic | 55.0% | |
| GTCTCCTTCATTGCCGAACC+TGG | + | chr7_4:4005201-4005220 | None:intergenic | 55.0% | |
| AGGGGTCCGCTTCAGATCAA+AGG | - | chr7_4:4005407-4005426 | Msa1136050:CDS | 55.0% | |
| GGGGTCCGCTTCAGATCAAA+GGG | - | chr7_4:4005408-4005427 | Msa1136050:CDS | 55.0% | |
| GGGTCTGTGGCAATGAGATC+TGG | + | chr7_4:4005488-4005507 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 4005113 | 4005662 | 4005113 | ID=Msa1136050;Name=Msa1136050 |
| chr7_4 | mRNA | 4005113 | 4005662 | 4005113 | ID=Msa1136050-mRNA-1;Parent=Msa1136050;Name=Msa1136050-mRNA-1;_AED=0.36;_eAED=0.38;_QI=0|0|0|1|1|1|2|0|156 |
| chr7_4 | exon | 4005204 | 4005662 | 4005204 | ID=Msa1136050-mRNA-1:exon:1097;Parent=Msa1136050-mRNA-1 |
| chr7_4 | exon | 4005113 | 4005124 | 4005113 | ID=Msa1136050-mRNA-1:exon:1096;Parent=Msa1136050-mRNA-1 |
| chr7_4 | CDS | 4005204 | 4005662 | 4005204 | ID=Msa1136050-mRNA-1:cds;Parent=Msa1136050-mRNA-1 |
| chr7_4 | CDS | 4005113 | 4005124 | 4005113 | ID=Msa1136050-mRNA-1:cds;Parent=Msa1136050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
