AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1102050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102050 MtrunA17_Chr7g0230771 95.811 740 19 3 1 736 1 732 0.0 1451
Msa1102050 MtrunA17_Chr7g0230731 95.516 736 26 2 1 736 1 729 0.0 1446
Msa1102050 MtrunA17_Chr4g0012071 53.346 538 194 11 211 736 60 552 4.64e-177 518
Msa1102050 MtrunA17_Chr8g0373561 35.946 370 220 11 377 736 180 542 4.01e-59 209
Msa1102050 MtrunA17_Chr2g0306641 31.316 380 227 9 376 735 122 487 5.98e-42 160
Msa1102050 MtrunA17_Chr7g0224271 26.484 438 270 11 324 736 264 674 9.95e-36 144
Msa1102050 MtrunA17_Chr3g0110971 27.895 380 246 7 376 735 216 587 1.18e-35 143
Msa1102050 MtrunA17_Chr8g0376381 27.733 375 238 9 376 735 166 522 2.11e-35 141
Msa1102050 MtrunA17_Chr4g0038761 30.081 369 230 13 382 735 87 442 1.85e-34 137
Msa1102050 MtrunA17_Chr3g0101141 27.056 377 248 9 378 735 174 542 2.88e-32 132
Msa1102050 MtrunA17_Chr4g0039661 28.818 406 265 12 345 735 159 555 5.25e-29 122
Msa1102050 MtrunA17_Chr5g0424131 29.442 394 234 16 376 736 118 500 8.38e-29 121
Msa1102050 MtrunA17_Chr5g0445331 25.469 373 259 7 380 735 162 532 1.19e-28 120
Msa1102050 MtrunA17_Chr3g0125811 26.954 371 252 8 380 735 204 570 1.43e-27 118
Msa1102050 MtrunA17_Chr3g0114841 26.933 401 237 16 376 736 117 501 1.27e-26 114
Msa1102050 MtrunA17_Chr2g0319091 26.031 388 263 9 365 734 197 578 1.48e-26 115
Msa1102050 MtrunA17_Chr7g0245601 27.322 366 240 9 382 735 441 792 1.51e-26 115
Msa1102050 MtrunA17_Chr5g0447691 23.099 355 256 7 395 735 193 544 2.21e-25 111
Msa1102050 MtrunA17_Chr1g0159461 26.596 376 247 12 380 735 226 592 2.93e-25 111
Msa1102050 MtrunA17_Chr8g0383981 26.273 373 254 9 373 734 133 495 1.07e-24 108
Msa1102050 MtrunA17_Chr2g0290241 24.543 383 253 11 378 736 56 426 2.81e-24 106
Msa1102050 MtrunA17_Chr4g0057291 23.545 378 265 7 376 734 289 661 1.78e-23 105
Msa1102050 MtrunA17_Chr1g0183641 28.533 375 238 16 376 736 120 478 1.90e-23 104
Msa1102050 MtrunA17_Chr5g0403741 30.736 231 147 6 513 736 51 275 3.00e-23 100
Msa1102050 MtrunA17_Chr4g0057891 25.258 388 251 12 376 736 146 521 4.68e-23 103
Msa1102050 MtrunA17_Chr4g0076091 23.622 381 255 9 380 736 176 544 7.92e-23 103
Msa1102050 MtrunA17_Chr8g0357601 22.798 386 260 10 376 735 179 552 6.41e-19 91.3
Msa1102050 MtrunA17_Chr2g0328431 23.181 371 262 9 380 734 290 653 9.33e-19 90.9
Msa1102050 MtrunA17_Chr2g0294471 23.711 388 271 10 365 735 197 576 1.89e-18 89.7
Msa1102050 MtrunA17_Chr2g0294461 24.147 381 268 9 375 735 206 585 2.51e-18 89.4
Msa1102050 MtrunA17_Chr2g0328381 24.665 373 255 11 380 734 276 640 1.16e-17 87.4
Msa1102050 MtrunA17_Chr4g0031741 23.848 369 263 7 380 734 285 649 1.32e-17 87.4
Msa1102050 MtrunA17_Chr1g0200401 25.935 401 236 16 376 734 77 458 2.10e-17 85.9
Msa1102050 MtrunA17_Chr7g0270031 25.337 371 256 11 380 735 190 554 2.29e-17 86.3
Msa1102050 MtrunA17_Chr7g0238891 22.222 378 262 6 380 735 373 740 3.19e-17 86.3
Msa1102050 MtrunA17_Chr2g0328391 22.572 381 257 9 380 734 300 668 1.34e-16 84.0
Msa1102050 MtrunA17_Chr4g0031721 21.792 413 283 10 350 734 283 683 2.11e-16 83.6
Msa1102050 MtrunA17_Chr2g0328341 22.798 386 246 10 380 734 273 637 2.14e-16 83.2
Msa1102050 MtrunA17_Chr2g0329591 23.274 391 251 10 380 735 75 451 3.51e-16 82.0
Msa1102050 MtrunA17_Chr2g0328411 21.739 414 290 11 348 734 247 653 6.51e-16 82.0
Msa1102050 MtrunA17_Chr4g0031731 22.432 370 265 9 380 730 255 621 7.08e-15 78.6
Msa1102050 MtrunA17_Chr4g0038851 32.941 170 106 2 356 517 19 188 4.32e-14 75.5
Msa1102050 MtrunA17_Chr4g0031701 21.409 369 270 7 380 730 255 621 4.80e-14 75.9
Msa1102050 MtrunA17_Chr2g0328401 21.714 350 251 7 380 713 291 633 9.74e-14 74.7
Msa1102050 MtrunA17_Chr4g0031711 21.505 372 274 6 380 734 362 732 1.04e-13 75.1
Msa1102050 MtrunA17_Chr5g0401131 21.465 396 251 11 380 735 115 490 7.43e-13 71.6
Msa1102050 MtrunA17_Chr5g0396491 27.179 195 136 2 356 548 33 223 8.51e-13 71.2
Msa1102050 MtrunA17_Chr3g0085681 31.724 145 89 2 380 518 26 166 2.18e-12 70.1
Msa1102050 MtrunA17_Chr1g0194621 23.457 405 269 16 360 735 126 518 5.35e-12 68.9
Msa1102050 MtrunA17_Chr2g0328371 24.000 250 172 6 449 685 2 246 9.33e-12 65.9
Msa1102050 MtrunA17_Chr2g0328361 24.000 375 230 14 380 734 275 614 1.41e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102050 AT4G00150.1 56.959 388 139 10 352 736 193 555 7.75e-139 420
Msa1102050 AT2G45160.1 48.069 466 201 16 294 736 193 640 1.52e-121 378
Msa1102050 AT3G60630.1 44.950 505 202 17 273 736 154 623 1.51e-111 352
Msa1102050 AT4G36710.1 32.888 374 225 12 377 735 123 485 5.01e-55 197
Msa1102050 AT2G01570.1 29.301 372 240 9 376 735 221 581 1.34e-33 137
Msa1102050 AT5G66770.1 27.990 393 260 12 358 735 200 584 2.35e-31 130
Msa1102050 AT3G03450.1 27.321 377 246 10 376 735 180 545 3.01e-31 129
Msa1102050 AT5G17490.1 28.989 376 235 13 376 735 157 516 1.02e-30 127
Msa1102050 AT3G54220.1 28.333 360 245 8 382 734 296 649 6.27e-30 126
Msa1102050 AT2G04890.1 26.005 373 246 8 380 735 54 413 7.79e-30 123
Msa1102050 AT5G48150.1 24.731 372 260 8 380 735 123 490 5.07e-29 122
Msa1102050 AT5G48150.4 24.731 372 260 8 380 735 123 490 5.07e-29 122
Msa1102050 AT5G48150.2 24.731 372 260 8 380 735 123 490 5.07e-29 122
Msa1102050 AT5G48150.3 24.731 372 260 8 380 735 123 490 5.07e-29 122
Msa1102050 AT1G14920.1 26.260 377 245 9 376 735 169 529 1.01e-28 121
Msa1102050 AT5G41920.1 25.122 410 266 10 342 735 16 400 1.18e-28 119
Msa1102050 AT3G50650.1 28.800 375 222 12 389 735 185 542 9.07e-28 119
Msa1102050 AT1G66350.1 25.606 371 251 10 376 736 152 507 1.74e-27 117
Msa1102050 AT1G50600.3 24.194 372 261 7 380 735 160 526 3.24e-27 117
Msa1102050 AT1G50600.2 24.194 372 261 7 380 735 235 601 1.02e-26 116
Msa1102050 AT1G50600.1 24.194 372 261 7 380 735 231 597 1.07e-26 116
Msa1102050 AT4G08250.1 29.024 379 243 14 376 734 104 476 1.70e-26 114
Msa1102050 AT4G17230.1 25.789 380 245 8 380 735 159 525 2.67e-26 114
Msa1102050 AT4G17230.2 25.789 380 245 8 380 735 159 525 2.67e-26 114
Msa1102050 AT1G21450.1 24.574 411 272 11 353 735 193 593 4.51e-26 114
Msa1102050 AT5G59450.1 23.333 420 281 10 346 735 190 598 7.05e-23 104
Msa1102050 AT1G55580.1 24.771 327 220 6 425 735 129 445 1.24e-19 92.8
Msa1102050 AT1G63100.1 24.495 396 246 14 376 734 249 628 2.09e-19 93.2
Msa1102050 AT1G63100.2 24.495 396 246 14 376 734 274 653 2.27e-19 93.2
Msa1102050 AT1G07520.1 21.067 375 269 8 383 734 322 692 5.40e-18 89.0
Msa1102050 AT1G07520.3 21.067 375 269 8 383 734 323 693 5.80e-18 89.0
Msa1102050 AT1G07520.2 21.067 375 269 8 383 734 158 528 6.51e-18 88.2
Msa1102050 AT1G07520.4 21.067 375 269 8 383 734 158 528 6.51e-18 88.2
Msa1102050 AT3G46600.1 21.594 389 281 7 368 735 194 579 1.25e-16 84.3
Msa1102050 AT3G46600.3 21.594 389 281 7 368 735 162 547 3.25e-16 82.8
Msa1102050 AT3G46600.2 21.622 370 273 6 380 735 5 371 6.90e-16 80.5
Msa1102050 AT1G07530.1 22.546 377 261 9 380 734 397 764 1.21e-15 81.6
Msa1102050 AT1G50420.1 29.897 194 116 5 376 558 54 238 3.05e-15 79.7
Msa1102050 AT4G37650.1 22.081 394 258 10 380 735 147 529 1.88e-14 77.4
Msa1102050 AT5G52510.1 24.522 314 191 11 457 735 338 640 2.69e-13 73.9
Msa1102050 AT2G29065.1 21.220 377 273 7 380 734 253 627 2.28e-12 70.9

Find 154 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTGAAGAACTGAAATT+AGG 0.187840 7_3:+33961186 None:intergenic
GGAAAAGGTGTGTTAGATTT+TGG 0.194202 7_3:-33961822 Msa1102050:CDS
GGCAGTTGAGAAGCTTGTTT+TGG 0.246331 7_3:-33959897 Msa1102050:CDS
AAGTTACCATTTGAAGAAAT+AGG 0.249425 7_3:+33961321 None:intergenic
ATTTGTTCTGATTTCCCTTT+TGG 0.265105 7_3:-33961237 Msa1102050:CDS
TCTTCGCCGCCACCGCTTCC+AGG 0.267033 7_3:+33960793 None:intergenic
TTCCATTATCAATTTCAATA+TGG 0.276508 7_3:+33961470 None:intergenic
AATTCCGAAGATACCCTTCT+TGG 0.278051 7_3:-33960944 Msa1102050:CDS
TTCCATATTGAAATTGATAA+TGG 0.285700 7_3:-33961472 Msa1102050:CDS
GCTTCCCCATAGGAGAAATT+TGG 0.291304 7_3:+33960656 None:intergenic
AAATGCCTCCTTAAAATAAA+AGG 0.302232 7_3:+33960618 None:intergenic
GTAGGAGTGGTTTGTTGATT+TGG 0.323080 7_3:+33961666 None:intergenic
AGATATTGAAGATGCATCTA+TGG 0.323147 7_3:-33961448 Msa1102050:CDS
GTATAAACTGAGCTTGGTTT+TGG 0.329115 7_3:+33961073 None:intergenic
GGAACACGCGCACGGGATAT+TGG 0.339508 7_3:-33960692 Msa1102050:CDS
AATGGCGCCTAAGCAGAAAA+TGG 0.339684 7_3:-33960821 Msa1102050:CDS
GAAGATACCCTTCTTGGATT+CGG 0.340738 7_3:-33960938 Msa1102050:CDS
GTTTATACCTAACCCTAGTT+TGG 0.345137 7_3:-33961058 Msa1102050:CDS
CAACAAGATGTTGAATTCAA+TGG 0.350188 7_3:-33961381 Msa1102050:CDS
CTTGTGAAGAACTGAAATTA+GGG 0.351845 7_3:+33961187 None:intergenic
CAGCATCAACAACAATCAAT+TGG 0.353717 7_3:-33961135 Msa1102050:CDS
AAGATACCCTTCTTGGATTC+GGG 0.361865 7_3:-33960937 Msa1102050:CDS
TGTTTGGTGCAGAGGATTCC+TGG 0.364499 7_3:-33959770 Msa1102050:CDS
TTTGCACTCCAGTCTTATTC+CGG 0.364854 7_3:-33960001 Msa1102050:CDS
AGTTACCATTTGAAGAAATA+GGG 0.368741 7_3:+33961322 None:intergenic
CGGGTCAAGAGATGTTTCTT+AGG 0.388186 7_3:-33960918 Msa1102050:CDS
ATCGGTAGAAGCGCCGCCTC+CGG 0.394887 7_3:+33961608 None:intergenic
CAATCACCAAATTTCTCCTA+TGG 0.395643 7_3:-33960662 Msa1102050:CDS
TATGTATTCTTCAAAGGGTA+AGG 0.404339 7_3:+33961845 None:intergenic
ACTTATAGACGCCGGTAATC+CGG 0.404547 7_3:-33960713 Msa1102050:CDS
CTTGACCCTATTTCTTCAAA+TGG 0.407880 7_3:-33961327 Msa1102050:CDS
TTCTATCCTGCGAGCGCAAA+CGG 0.414907 7_3:+33959873 None:intergenic
GTGCGCGTGTTCCGGATTAC+CGG 0.417521 7_3:+33960702 None:intergenic
GGGAACCCTGGAAGCGGTGG+CGG 0.418143 7_3:-33960799 Msa1102050:CDS
AGTCTCTGAATTCTGTTTCG+TGG 0.422058 7_3:-33960204 Msa1102050:CDS
AATATCCCGTGCGCGTGTTC+CGG 0.422409 7_3:+33960694 None:intergenic
AAGATGTGGAATGGAGGATT+GGG 0.422443 7_3:-33961535 Msa1102050:CDS
CGCAGCGCCGGTGGTGCTAT+CGG 0.426723 7_3:+33961590 None:intergenic
ATGGCGCCTAAGCAGAAAAT+GGG 0.428884 7_3:-33960820 Msa1102050:CDS
AGAGTCGCAGGCAGAGTGTT+TGG 0.429838 7_3:-33959786 Msa1102050:CDS
AAATTTGAAAACTGCAGAAC+AGG 0.433172 7_3:+33960490 None:intergenic
CCACAGCTTCAAGCAATGCT+TGG 0.439953 7_3:+33960458 None:intergenic
TCGATCATCTGAAGGACATC+CGG 0.441979 7_3:+33959938 None:intergenic
TAATTTGAGAAAGAGCAAAT+AGG 0.442683 7_3:+33960139 None:intergenic
ACTAGCCTCTTGCTCAAGAT+TGG 0.445518 7_3:-33960541 Msa1102050:CDS
ATCTCATCTCGGTTTCAACT+TGG 0.447156 7_3:-33959688 Msa1102050:CDS
TTTCCTATGTATTCTTCAAA+GGG 0.453051 7_3:+33961840 None:intergenic
AAAGATGTGGAATGGAGGAT+TGG 0.456441 7_3:-33961536 Msa1102050:CDS
AGCAGCAGTAGCAGTGGTAG+TGG 0.460125 7_3:+33961263 None:intergenic
TTCATCCCTCTACTACCAAA+AGG 0.463150 7_3:+33961222 None:intergenic
TCACAAGTTTCACTTTCTCA+TGG 0.465348 7_3:-33961171 Msa1102050:CDS
GGTGCAGAGGATTCCTGGTA+GGG 0.470286 7_3:-33959765 Msa1102050:CDS
ATCAAGTGATTCAAGCAAAC+CGG 0.470386 7_3:+33959982 None:intergenic
TCGCAATCGCGTAGTGGCTG+CGG 0.474481 7_3:+33960181 None:intergenic
TAAAAGGCAGCCCTTTGAAA+AGG 0.479249 7_3:+33960634 None:intergenic
GCCTAAAATTGTCGTAACAT+TGG 0.480828 7_3:-33960071 Msa1102050:CDS
AGGGAAAATTGTTGCTATGC+GGG 0.481377 7_3:-33961729 Msa1102050:CDS
CTCGATTTCGTCGTGGTGTG+AGG 0.481816 7_3:+33960306 None:intergenic
CGCAGGATAGAACACTTCCC+TGG 0.482072 7_3:-33959862 Msa1102050:CDS
AGCTTCAAGCAATGCTTGGT+TGG 0.488113 7_3:+33960462 None:intergenic
TTTGAAGAATACATAGGAAA+AGG 0.490303 7_3:-33961837 Msa1102050:CDS
GGTTAGGTATAAACTGAGCT+TGG 0.491230 7_3:+33961067 None:intergenic
AGCATCAACAACAATCAATT+GGG 0.491428 7_3:-33961134 Msa1102050:CDS
TTTGGGCCGTTTGCGCTCGC+AGG 0.491743 7_3:-33959879 Msa1102050:CDS
TGGTGCAGAGGATTCCTGGT+AGG 0.496504 7_3:-33959766 Msa1102050:CDS
ACGCGATTGCGAAGCAGTTG+TGG 0.497464 7_3:-33960170 Msa1102050:CDS
TCACACGGTAGCGCCGGAGG+CGG 0.497760 7_3:-33961621 Msa1102050:CDS
AGCACTAAAGGCAGGTATGA+AGG 0.498213 7_3:+33960115 None:intergenic
ATCTTGAGCAAGAGGCTAGT+TGG 0.505941 7_3:+33960544 None:intergenic
CCATTGTCCTCTGCTGCAGA+TGG 0.506974 7_3:+33960839 None:intergenic
CGAGAAATACTATCTTCAAC+CGG 0.509431 7_3:-33959918 Msa1102050:CDS
AATCACCAAATTTCTCCTAT+GGG 0.509811 7_3:-33960661 Msa1102050:CDS
GAATCCAAGAAGGGTATCTT+CGG 0.510787 7_3:+33960940 None:intergenic
CGGTGGCGGCGAAGATGTAT+CGG 0.512246 7_3:-33960785 Msa1102050:CDS
CGATCATCTGAAGGACATCC+GGG 0.514286 7_3:+33959939 None:intergenic
ACAATGGTCTTCATTTATGC+AGG 0.517675 7_3:-33960386 Msa1102050:CDS
GTGCAGAGGATTCCTGGTAG+GGG 0.518621 7_3:-33959764 Msa1102050:CDS
AAAATCATATGCTGAGGAAA+CGG 0.519993 7_3:+33960022 None:intergenic
TTACCCTTTGAAGAATACAT+AGG 0.522370 7_3:-33961843 Msa1102050:CDS
AAAACAAGCTTCTCAACTGC+CGG 0.524789 7_3:+33959899 None:intergenic
CCAAGCATTGCTTGAAGCTG+TGG 0.524919 7_3:-33960458 Msa1102050:CDS
CTTCGCCGCCACCGCTTCCA+GGG 0.526440 7_3:+33960794 None:intergenic
AGAACTCACTTGTCTTGTGT+TGG 0.527376 7_3:-33959721 Msa1102050:CDS
CACTTGTCTTGTGTTGGCAA+AGG 0.532124 7_3:-33959715 Msa1102050:CDS
TCATCCCTCTACTACCAAAA+GGG 0.532544 7_3:+33961223 None:intergenic
ATGGGGAACCCTGGAAGCGG+TGG 0.534973 7_3:-33960802 Msa1102050:CDS
TGTCTTGTGTTGGCAAAGGA+AGG 0.536796 7_3:-33959711 Msa1102050:CDS
TAGTAACTTCACAGAGTCGC+AGG 0.538196 7_3:-33959798 Msa1102050:CDS
GACAGTGTTGAGGATGAAGT+AGG 0.538311 7_3:+33961648 None:intergenic
CTCTTGACCCGAATCCAAGA+AGG 0.539089 7_3:+33960930 None:intergenic
CAAGCAAACCGGAATAAGAC+TGG 0.539954 7_3:+33959993 None:intergenic
TCCACATGGAATCCCCTACC+AGG 0.543648 7_3:+33959752 None:intergenic
ATGAAGAAGAAGAATGAATG+AGG 0.544065 7_3:-33962146 Msa1102050:intron
GATATTGAAGATGCATCTAT+GGG 0.546979 7_3:-33961447 Msa1102050:CDS
TTTGTTGGCCGCAGCGCCGG+TGG 0.548083 7_3:+33961581 None:intergenic
AAGCACCAATCTTGAGCAAG+AGG 0.549041 7_3:+33960536 None:intergenic
CTTTGAAAAGGCTTCCCCAT+AGG 0.549307 7_3:+33960646 None:intergenic
CAAGTTTCACTTTCTCATGG+TGG 0.549648 7_3:-33961168 Msa1102050:CDS
TGAAGGTAAAAGATGTGGAA+TGG 0.553057 7_3:-33961544 Msa1102050:CDS
TTCCTCACCATCTGCAGCAG+AGG 0.556566 7_3:-33960846 Msa1102050:CDS
ATCGGCTCATCAGTTTCAGC+AGG 0.556576 7_3:-33960767 Msa1102050:CDS
TTCACGAATCGAAGCACTAA+AGG 0.557184 7_3:+33960103 None:intergenic
TGTTGAGGATGAAGTAGGAG+TGG 0.560505 7_3:+33961653 None:intergenic
TCGATTTCGTCGTGGTGTGA+GGG 0.560923 7_3:+33960307 None:intergenic
GTCAAGAGATGTTTCTTAGG+AGG 0.562943 7_3:-33960915 Msa1102050:CDS
AGGCAGAGTGTTTGGTGCAG+AGG 0.564913 7_3:-33959778 Msa1102050:CDS
GAATGATCTTGATCTTGACT+TGG 0.565052 7_3:+33961492 None:intergenic
GCACTAAAGGCAGGTATGAA+GGG 0.565237 7_3:+33960116 None:intergenic
AAGCAGAAAATGGGGAACCC+TGG 0.568423 7_3:-33960811 Msa1102050:CDS
TCCTCACACGGTAGCGCCGG+AGG 0.569283 7_3:-33961624 Msa1102050:CDS
TCTTCCTCACACGGTAGCGC+CGG 0.570460 7_3:-33961627 Msa1102050:CDS
GAGAATCTGAAGCAATATGC+TGG 0.570600 7_3:-33960268 Msa1102050:CDS
AATCTCAGCAGCAGTAGCAG+TGG 0.572943 7_3:+33961257 None:intergenic
GGTAATCCGGAACACGCGCA+CGG 0.575492 7_3:-33960700 Msa1102050:CDS
GTCCTCTGCTGCAGATGGTG+AGG 0.576808 7_3:+33960844 None:intergenic
GAGGCTGAAGCTGAATCTCT+CGG 0.577024 7_3:+33961001 None:intergenic
CAAATTGAAGGTAAAAGATG+TGG 0.580900 7_3:-33961549 Msa1102050:CDS
AAAACCTACTCTTGTCATCA+GGG 0.582681 7_3:-33959838 Msa1102050:CDS
GCATTGCTTGAAGCTGTGGA+AGG 0.584725 7_3:-33960454 Msa1102050:CDS
CGAATCGAAGCACTAAAGGC+AGG 0.590451 7_3:+33960107 None:intergenic
GTAATCCGGAACACGCGCAC+GGG 0.591224 7_3:-33960699 Msa1102050:CDS
GCAAAGGAAGGATCTCATCT+CGG 0.596929 7_3:-33959699 Msa1102050:CDS
AGTATTTCTCGATCATCTGA+AGG 0.598913 7_3:+33959930 None:intergenic
GCTTCTACCGATAGCACCAC+CGG 0.599672 7_3:-33961597 Msa1102050:CDS
GGATAGGAGTTGTGATCGAA+CGG 0.600755 7_3:-33960050 Msa1102050:CDS
ATGTATTCTTCAAAGGGTAA+GGG 0.603369 7_3:+33961846 None:intergenic
CCATCTGCAGCAGAGGACAA+TGG 0.604634 7_3:-33960839 Msa1102050:CDS
TTATGCAGGAGTTAGCACTA+AGG 0.606201 7_3:-33960372 Msa1102050:CDS
AGTTCTGCTTCTTCTCCACA+TGG 0.609894 7_3:+33959738 None:intergenic
AAAATGGGGAACCCTGGAAG+CGG 0.610138 7_3:-33960805 Msa1102050:CDS
TGCAGCTGAGAGTGTGTGAA+AGG 0.610994 7_3:+33961030 None:intergenic
AAATTGTCGTAACATTGGAT+AGG 0.615531 7_3:-33960066 Msa1102050:CDS
ACGCGCACGGGATATTGGCG+CGG 0.617795 7_3:-33960687 Msa1102050:CDS
CGATAGCACCACCGGCGCTG+CGG 0.619257 7_3:-33961589 Msa1102050:CDS
AGGTAAAAGATGTGGAATGG+AGG 0.623374 7_3:-33961541 Msa1102050:CDS
AGAACCCTGATGACAAGAGT+AGG 0.623547 7_3:+33959834 None:intergenic
CAGGAGTTAGCACTAAGGAA+TGG 0.623926 7_3:-33960367 Msa1102050:CDS
GTGAAGTTACTAAATGTCAA+CGG 0.630606 7_3:+33959809 None:intergenic
TCTTGACCCGAATCCAAGAA+GGG 0.632079 7_3:+33960931 None:intergenic
ATCACCAAATTTCTCCTATG+GGG 0.632427 7_3:-33960660 Msa1102050:CDS
TCAACACTGTCTTCCTCACA+CGG 0.633334 7_3:-33961636 Msa1102050:CDS
TGGTTCATAACAAACTGATG+AGG 0.638887 7_3:+33961093 None:intergenic
TCCTGGTAGGGGATTCCATG+TGG 0.639151 7_3:-33959753 Msa1102050:CDS
ACTGCTTCGCAATCGCGTAG+TGG 0.643756 7_3:+33960175 None:intergenic
AATGCAGTGATCTTGAGTGC+AGG 0.644744 7_3:+33960337 None:intergenic
GAGGGAAAATTGTTGCTATG+CGG 0.647727 7_3:-33961730 Msa1102050:CDS
GAGTTAGCACTAAGGAATGG+TGG 0.649571 7_3:-33960364 Msa1102050:CDS
CCAGCTAAAAGACTCAATTG+TGG 0.675226 7_3:-33960979 Msa1102050:CDS
TGTTAGTGTTAATGTCCACC+CGG 0.680851 7_3:-33959957 Msa1102050:CDS
TGGCGCCTAAGCAGAAAATG+GGG 0.686084 7_3:-33960819 Msa1102050:CDS
GCTGCAGAACTTATAGACGC+CGG 0.689078 7_3:-33960721 Msa1102050:CDS
AACTAAGCTCGATTTCGTCG+TGG 0.700452 7_3:+33960299 None:intergenic
TCATCTGAAGGACATCCGGG+TGG 0.719806 7_3:+33959942 None:intergenic
GTGTGAGGAAGACAGTGTTG+AGG 0.783398 7_3:+33961638 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATATAATAGATTTTGATAT+TGG - chr7_3:33961510-33961529 Msa1102050:CDS 15.0%
!!! TATTGTTGTTCTTATGAAAA+TGG - chr7_3:33959836-33959855 Msa1102050:CDS 20.0%
!!! ATTGTTGTTCTTATGAAAAT+GGG - chr7_3:33959837-33959856 Msa1102050:CDS 20.0%
!! TTCCATATTGAAATTGATAA+TGG - chr7_3:33960456-33960475 Msa1102050:CDS 20.0%
!! TTCCATTATCAATTTCAATA+TGG + chr7_3:33960461-33960480 None:intergenic 20.0%
!!! ATTCAATGGTTTTAGTTTTA+TGG - chr7_3:33960561-33960580 Msa1102050:CDS 20.0%
!!! ATAGATTTTGATATTGGTTT+TGG - chr7_3:33961516-33961535 Msa1102050:CDS 20.0%
!! AAAAACAAGATCTGAAGTTA+AGG + chr7_3:33959932-33959951 None:intergenic 25.0%
! ATCAACAACAAAGACAAAAT+GGG + chr7_3:33960001-33960020 None:intergenic 25.0%
! AATCAACAACAAAGACAAAA+TGG + chr7_3:33960002-33960021 None:intergenic 25.0%
! TTTCCTATGTATTCTTCAAA+GGG + chr7_3:33960091-33960110 None:intergenic 25.0%
!! TTTTCCTATGTATTCTTCAA+AGG + chr7_3:33960092-33960111 None:intergenic 25.0%
! TTTGAAGAATACATAGGAAA+AGG - chr7_3:33960091-33960110 Msa1102050:CDS 25.0%
! TCAAAAACAACAACAGAATT+GGG + chr7_3:33960232-33960251 None:intergenic 25.0%
!!! TTTGTTGATTTGGTTTTTTG+AGG + chr7_3:33960255-33960274 None:intergenic 25.0%
!!! AATTTGTGGTATGTTTTTGT+TGG + chr7_3:33960365-33960384 None:intergenic 25.0%
! AAAAACATACCACAAATTGA+AGG - chr7_3:33960367-33960386 Msa1102050:CDS 25.0%
! AGTTACCATTTGAAGAAATA+GGG + chr7_3:33960609-33960628 None:intergenic 25.0%
! AAGTTACCATTTGAAGAAAT+AGG + chr7_3:33960610-33960629 None:intergenic 25.0%
!! TATAATTGATCAGCTTTTCA+AGG - chr7_3:33961185-33961204 Msa1102050:CDS 25.0%
! AAATGCCTCCTTAAAATAAA+AGG + chr7_3:33961313-33961332 None:intergenic 25.0%
! TAATTTGAGAAAGAGCAAAT+AGG + chr7_3:33961792-33961811 None:intergenic 25.0%
TGTTGTGTTTGAGTGAAAAA+AGG - chr7_3:33959741-33959760 Msa1102050:CDS 30.0%
ATGAAGAAGAAGAATGAATG+AGG - chr7_3:33959782-33959801 Msa1102050:CDS 30.0%
! TGTGTGTTTATGTCTTTTGT+TGG - chr7_3:33959810-33959829 Msa1102050:CDS 30.0%
!!! TGTGTTTTTTTGTCTGAACT+AGG - chr7_3:33959895-33959914 Msa1102050:CDS 30.0%
TGTTTGAAAGAAACTTGTGT+TGG - chr7_3:33960029-33960048 Msa1102050:CDS 30.0%
!! GTTGTTGTTGATTTAGATGA+AGG - chr7_3:33960054-33960073 Msa1102050:CDS 30.0%
ATGTATTCTTCAAAGGGTAA+GGG + chr7_3:33960085-33960104 None:intergenic 30.0%
TATGTATTCTTCAAAGGGTA+AGG + chr7_3:33960086-33960105 None:intergenic 30.0%
! TTACCCTTTGAAGAATACAT+AGG - chr7_3:33960085-33960104 Msa1102050:CDS 30.0%
GTCAAAAACAACAACAGAAT+TGG + chr7_3:33960233-33960252 None:intergenic 30.0%
! CATCTTTTACCTTCAATTTG+TGG + chr7_3:33960379-33960398 None:intergenic 30.0%
CAAATTGAAGGTAAAAGATG+TGG - chr7_3:33960379-33960398 Msa1102050:CDS 30.0%
AGATATTGAAGATGCATCTA+TGG - chr7_3:33960480-33960499 Msa1102050:CDS 30.0%
GATATTGAAGATGCATCTAT+GGG - chr7_3:33960481-33960500 Msa1102050:CDS 30.0%
! TTAAGCAAGCTTTTACAAGT+TGG - chr7_3:33960505-33960524 Msa1102050:CDS 30.0%
CAACAAGATGTTGAATTCAA+TGG - chr7_3:33960547-33960566 Msa1102050:CDS 30.0%
! ATTTGTTCTGATTTCCCTTT+TGG - chr7_3:33960691-33960710 Msa1102050:CDS 30.0%
CTTGTGAAGAACTGAAATTA+GGG + chr7_3:33960744-33960763 None:intergenic 30.0%
ACTTGTGAAGAACTGAAATT+AGG + chr7_3:33960745-33960764 None:intergenic 30.0%
AGCATCAACAACAATCAATT+GGG - chr7_3:33960794-33960813 Msa1102050:CDS 30.0%
TGAAAGGAAAAACCAAACTA+GGG + chr7_3:33960885-33960904 None:intergenic 30.0%
AATCACCAAATTTCTCCTAT+GGG - chr7_3:33961267-33961286 Msa1102050:CDS 30.0%
AAATTTGAAAACTGCAGAAC+AGG + chr7_3:33961441-33961460 None:intergenic 30.0%
!!! GATTTTGATATTGGTTTTGG+TGG - chr7_3:33961519-33961538 Msa1102050:CDS 30.0%
! TCCAATGTTACGACAATTTT+AGG + chr7_3:33961861-33961880 None:intergenic 30.0%
AAATTGTCGTAACATTGGAT+AGG - chr7_3:33961862-33961881 Msa1102050:intron 30.0%
AAAATCATATGCTGAGGAAA+CGG + chr7_3:33961909-33961928 None:intergenic 30.0%
GTGAAGTTACTAAATGTCAA+CGG + chr7_3:33962122-33962141 None:intergenic 30.0%
!! GGAAAAGGTGTGTTAGATTT+TGG - chr7_3:33960106-33960125 Msa1102050:CDS 35.0%
! TGTTTTCTCAACAGCAAGAA+CGG - chr7_3:33960161-33960180 Msa1102050:CDS 35.0%
TGAAGGTAAAAGATGTGGAA+TGG - chr7_3:33960384-33960403 Msa1102050:CDS 35.0%
GAATGATCTTGATCTTGACT+TGG + chr7_3:33960439-33960458 None:intergenic 35.0%
! CTTGACCCTATTTCTTCAAA+TGG - chr7_3:33960601-33960620 Msa1102050:CDS 35.0%
!! ATTTCCCTTTTGGTAGTAGA+GGG - chr7_3:33960701-33960720 Msa1102050:CDS 35.0%
TCACAAGTTTCACTTTCTCA+TGG - chr7_3:33960757-33960776 Msa1102050:CDS 35.0%
CAGCATCAACAACAATCAAT+TGG - chr7_3:33960793-33960812 Msa1102050:CDS 35.0%
TGGTTCATAACAAACTGATG+AGG + chr7_3:33960838-33960857 None:intergenic 35.0%
! GTATAAACTGAGCTTGGTTT+TGG + chr7_3:33960858-33960877 None:intergenic 35.0%
GTTTATACCTAACCCTAGTT+TGG - chr7_3:33960870-33960889 Msa1102050:CDS 35.0%
GTGAAAGGAAAAACCAAACT+AGG + chr7_3:33960886-33960905 None:intergenic 35.0%
CAATCACCAAATTTCTCCTA+TGG - chr7_3:33961266-33961285 Msa1102050:CDS 35.0%
ATCACCAAATTTCTCCTATG+GGG - chr7_3:33961268-33961287 Msa1102050:CDS 35.0%
!!! AAGGGCTGCCTTTTATTTTA+AGG - chr7_3:33961302-33961321 Msa1102050:CDS 35.0%
!!! ATATTGGTTTTGGTGGACAA+TGG - chr7_3:33961526-33961545 Msa1102050:CDS 35.0%
ACAATGGTCTTCATTTATGC+AGG - chr7_3:33961542-33961561 Msa1102050:CDS 35.0%
GCCTAAAATTGTCGTAACAT+TGG - chr7_3:33961857-33961876 Msa1102050:CDS 35.0%
AGTGCAAAAATCATATGCTG+AGG + chr7_3:33961915-33961934 None:intergenic 35.0%
ATCAAGTGATTCAAGCAAAC+CGG + chr7_3:33961949-33961968 None:intergenic 35.0%
AGTATTTCTCGATCATCTGA+AGG + chr7_3:33962001-33962020 None:intergenic 35.0%
CGAGAAATACTATCTTCAAC+CGG - chr7_3:33962010-33962029 Msa1102050:intron 35.0%
AAAAACCTACTCTTGTCATC+AGG - chr7_3:33962089-33962108 Msa1102050:intron 35.0%
AAAACCTACTCTTGTCATCA+GGG - chr7_3:33962090-33962109 Msa1102050:intron 35.0%
! AGCAAGAACGGTTTTTGCAA+AGG - chr7_3:33960173-33960192 Msa1102050:CDS 40.0%
! AAGAACGGTTTTTGCAAAGG+TGG - chr7_3:33960176-33960195 Msa1102050:CDS 40.0%
GAGGGAAAATTGTTGCTATG+CGG - chr7_3:33960198-33960217 Msa1102050:CDS 40.0%
AGGGAAAATTGTTGCTATGC+GGG - chr7_3:33960199-33960218 Msa1102050:CDS 40.0%
!! GTAGGAGTGGTTTGTTGATT+TGG + chr7_3:33960265-33960284 None:intergenic 40.0%
AGGTAAAAGATGTGGAATGG+AGG - chr7_3:33960387-33960406 Msa1102050:CDS 40.0%
AAAGATGTGGAATGGAGGAT+TGG - chr7_3:33960392-33960411 Msa1102050:CDS 40.0%
AAGATGTGGAATGGAGGATT+GGG - chr7_3:33960393-33960412 Msa1102050:CDS 40.0%
!! GATTTCCCTTTTGGTAGTAG+AGG - chr7_3:33960700-33960719 Msa1102050:CDS 40.0%
TCATCCCTCTACTACCAAAA+GGG + chr7_3:33960708-33960727 None:intergenic 40.0%
TTCATCCCTCTACTACCAAA+AGG + chr7_3:33960709-33960728 None:intergenic 40.0%
CAAGTTTCACTTTCTCATGG+TGG - chr7_3:33960760-33960779 Msa1102050:CDS 40.0%
GGTTAGGTATAAACTGAGCT+TGG + chr7_3:33960864-33960883 None:intergenic 40.0%
GGAAAAACCAAACTAGGGTT+AGG + chr7_3:33960880-33960899 None:intergenic 40.0%
!! CAATTGAGTCTTTTAGCTGG+AGG + chr7_3:33960949-33960968 None:intergenic 40.0%
! CCACAATTGAGTCTTTTAGC+TGG + chr7_3:33960952-33960971 None:intergenic 40.0%
CCAGCTAAAAGACTCAATTG+TGG - chr7_3:33960949-33960968 Msa1102050:CDS 40.0%
AATTCCGAAGATACCCTTCT+TGG - chr7_3:33960984-33961003 Msa1102050:CDS 40.0%
!! GAATCCAAGAAGGGTATCTT+CGG + chr7_3:33960991-33961010 None:intergenic 40.0%
GAAGATACCCTTCTTGGATT+CGG - chr7_3:33960990-33961009 Msa1102050:CDS 40.0%
AAGATACCCTTCTTGGATTC+GGG - chr7_3:33960991-33961010 Msa1102050:CDS 40.0%
GTCAAGAGATGTTTCTTAGG+AGG - chr7_3:33961013-33961032 Msa1102050:CDS 40.0%
! TATGGGGAAGCCTTTTCAAA+GGG - chr7_3:33961284-33961303 Msa1102050:CDS 40.0%
! TAAAAGGCAGCCCTTTGAAA+AGG + chr7_3:33961297-33961316 None:intergenic 40.0%
!!! GGCTGCCTTTTATTTTAAGG+AGG - chr7_3:33961305-33961324 Msa1102050:CDS 40.0%
TTATGCAGGAGTTAGCACTA+AGG - chr7_3:33961556-33961575 Msa1102050:CDS 40.0%
! GAGAATCTGAAGCAATATGC+TGG - chr7_3:33961660-33961679 Msa1102050:CDS 40.0%
AGTCTCTGAATTCTGTTTCG+TGG - chr7_3:33961724-33961743 Msa1102050:CDS 40.0%
! TTCACGAATCGAAGCACTAA+AGG + chr7_3:33961828-33961847 None:intergenic 40.0%
!! TTTGCACTCCAGTCTTATTC+CGG - chr7_3:33961927-33961946 Msa1102050:intron 40.0%
TGTTAGTGTTAATGTCCACC+CGG - chr7_3:33961971-33961990 Msa1102050:intron 40.0%
AAAACAAGCTTCTCAACTGC+CGG + chr7_3:33962032-33962051 None:intergenic 40.0%
!! GCAGTTGAGAAGCTTGTTTT+GGG - chr7_3:33962032-33962051 Msa1102050:intron 40.0%
! GACAAGAGTAGGTTTTTCCA+GGG + chr7_3:33962086-33962105 None:intergenic 40.0%
! TGACAAGAGTAGGTTTTTCC+AGG + chr7_3:33962087-33962106 None:intergenic 40.0%
AGAACTCACTTGTCTTGTGT+TGG - chr7_3:33962207-33962226 Msa1102050:five_prime_UTR 40.0%
ATCTCATCTCGGTTTCAACT+TGG - chr7_3:33962240-33962259 Msa1102050:five_prime_UTR 40.0%
! AACGGTTTTTGCAAAGGTGG+AGG - chr7_3:33960179-33960198 Msa1102050:CDS 45.0%
! ACGGTTTTTGCAAAGGTGGA+GGG - chr7_3:33960180-33960199 Msa1102050:CDS 45.0%
TGTTGAGGATGAAGTAGGAG+TGG + chr7_3:33960278-33960297 None:intergenic 45.0%
! GACAGTGTTGAGGATGAAGT+AGG + chr7_3:33960283-33960302 None:intergenic 45.0%
TCAACACTGTCTTCCTCACA+CGG - chr7_3:33960292-33960311 Msa1102050:CDS 45.0%
TCTTGACCCGAATCCAAGAA+GGG + chr7_3:33961000-33961019 None:intergenic 45.0%
CGGGTCAAGAGATGTTTCTT+AGG - chr7_3:33961010-33961029 Msa1102050:CDS 45.0%
AATGGCGCCTAAGCAGAAAA+TGG - chr7_3:33961107-33961126 Msa1102050:CDS 45.0%
ATGGCGCCTAAGCAGAAAAT+GGG - chr7_3:33961108-33961127 Msa1102050:CDS 45.0%
ACTTATAGACGCCGGTAATC+CGG - chr7_3:33961215-33961234 Msa1102050:CDS 45.0%
GCTTCCCCATAGGAGAAATT+TGG + chr7_3:33961275-33961294 None:intergenic 45.0%
! CTTTGAAAAGGCTTCCCCAT+AGG + chr7_3:33961285-33961304 None:intergenic 45.0%
! CTATGGGGAAGCCTTTTCAA+AGG - chr7_3:33961283-33961302 Msa1102050:CDS 45.0%
ATCTTGAGCAAGAGGCTAGT+TGG + chr7_3:33961387-33961406 None:intergenic 45.0%
! ACTAGCCTCTTGCTCAAGAT+TGG - chr7_3:33961387-33961406 Msa1102050:CDS 45.0%
AAGCACCAATCTTGAGCAAG+AGG + chr7_3:33961395-33961414 None:intergenic 45.0%
AGCTTCAAGCAATGCTTGGT+TGG + chr7_3:33961469-33961488 None:intergenic 45.0%
CAGGAGTTAGCACTAAGGAA+TGG - chr7_3:33961561-33961580 Msa1102050:CDS 45.0%
GAGTTAGCACTAAGGAATGG+TGG - chr7_3:33961564-33961583 Msa1102050:CDS 45.0%
AATGCAGTGATCTTGAGTGC+AGG + chr7_3:33961594-33961613 None:intergenic 45.0%
AACTAAGCTCGATTTCGTCG+TGG + chr7_3:33961632-33961651 None:intergenic 45.0%
GCACTAAAGGCAGGTATGAA+GGG + chr7_3:33961815-33961834 None:intergenic 45.0%
AGCACTAAAGGCAGGTATGA+AGG + chr7_3:33961816-33961835 None:intergenic 45.0%
GGATAGGAGTTGTGATCGAA+CGG - chr7_3:33961878-33961897 Msa1102050:intron 45.0%
CAAGCAAACCGGAATAAGAC+TGG + chr7_3:33961938-33961957 None:intergenic 45.0%
TCGATCATCTGAAGGACATC+CGG + chr7_3:33961993-33962012 None:intergenic 45.0%
!! GGCAGTTGAGAAGCTTGTTT+TGG - chr7_3:33962031-33962050 Msa1102050:intron 45.0%
AGAACCCTGATGACAAGAGT+AGG + chr7_3:33962097-33962116 None:intergenic 45.0%
TAGTAACTTCACAGAGTCGC+AGG - chr7_3:33962130-33962149 Msa1102050:intron 45.0%
AGTTCTGCTTCTTCTCCACA+TGG + chr7_3:33962193-33962212 None:intergenic 45.0%
! CACTTGTCTTGTGTTGGCAA+AGG - chr7_3:33962213-33962232 Msa1102050:five_prime_UTR 45.0%
! TGTCTTGTGTTGGCAAAGGA+AGG - chr7_3:33962217-33962236 Msa1102050:five_prime_UTR 45.0%
GCAAAGGAAGGATCTCATCT+CGG - chr7_3:33962229-33962248 Msa1102050:five_prime_UTR 45.0%
GTGTGAGGAAGACAGTGTTG+AGG + chr7_3:33960293-33960312 None:intergenic 50.0%
AATCTCAGCAGCAGTAGCAG+TGG + chr7_3:33960674-33960693 None:intergenic 50.0%
! TGCAGCTGAGAGTGTGTGAA+AGG + chr7_3:33960901-33960920 None:intergenic 50.0%
GAGGCTGAAGCTGAATCTCT+CGG + chr7_3:33960930-33960949 None:intergenic 50.0%
CTCTTGACCCGAATCCAAGA+AGG + chr7_3:33961001-33961020 None:intergenic 50.0%
TGGCGCCTAAGCAGAAAATG+GGG - chr7_3:33961109-33961128 Msa1102050:CDS 50.0%
! GGGTTCCCCATTTTCTGCTT+AGG + chr7_3:33961117-33961136 None:intergenic 50.0%
AAGCAGAAAATGGGGAACCC+TGG - chr7_3:33961117-33961136 Msa1102050:CDS 50.0%
AAAATGGGGAACCCTGGAAG+CGG - chr7_3:33961123-33961142 Msa1102050:CDS 50.0%
! ATCGGCTCATCAGTTTCAGC+AGG - chr7_3:33961161-33961180 Msa1102050:CDS 50.0%
GCTGCAGAACTTATAGACGC+CGG - chr7_3:33961207-33961226 Msa1102050:CDS 50.0%
CCACAGCTTCAAGCAATGCT+TGG + chr7_3:33961473-33961492 None:intergenic 50.0%
! CCAAGCATTGCTTGAAGCTG+TGG - chr7_3:33961470-33961489 Msa1102050:CDS 50.0%
GCATTGCTTGAAGCTGTGGA+AGG - chr7_3:33961474-33961493 Msa1102050:CDS 50.0%
TCGATTTCGTCGTGGTGTGA+GGG + chr7_3:33961624-33961643 None:intergenic 50.0%
! CGAATCGAAGCACTAAAGGC+AGG + chr7_3:33961824-33961843 None:intergenic 50.0%
CGATCATCTGAAGGACATCC+GGG + chr7_3:33961992-33962011 None:intergenic 50.0%
TTCTATCCTGCGAGCGCAAA+CGG + chr7_3:33962058-33962077 None:intergenic 50.0%
!! TGTTTGGTGCAGAGGATTCC+TGG - chr7_3:33962158-33962177 Msa1102050:five_prime_UTR 50.0%
GCTTCTACCGATAGCACCAC+CGG - chr7_3:33960331-33960350 Msa1102050:CDS 55.0%
AGCAGCAGTAGCAGTGGTAG+TGG + chr7_3:33960668-33960687 None:intergenic 55.0%
TTCCTCACCATCTGCAGCAG+AGG - chr7_3:33961082-33961101 Msa1102050:CDS 55.0%
CCATTGTCCTCTGCTGCAGA+TGG + chr7_3:33961092-33961111 None:intergenic 55.0%
CCATCTGCAGCAGAGGACAA+TGG - chr7_3:33961089-33961108 Msa1102050:CDS 55.0%
AATATCCCGTGCGCGTGTTC+CGG + chr7_3:33961237-33961256 None:intergenic 55.0%
CTCGATTTCGTCGTGGTGTG+AGG + chr7_3:33961625-33961644 None:intergenic 55.0%
ACTGCTTCGCAATCGCGTAG+TGG + chr7_3:33961756-33961775 None:intergenic 55.0%
ACGCGATTGCGAAGCAGTTG+TGG - chr7_3:33961758-33961777 Msa1102050:CDS 55.0%
TCATCTGAAGGACATCCGGG+TGG + chr7_3:33961989-33962008 None:intergenic 55.0%
CGCAGGATAGAACACTTCCC+TGG - chr7_3:33962066-33962085 Msa1102050:intron 55.0%
! AGAGTCGCAGGCAGAGTGTT+TGG - chr7_3:33962142-33962161 Msa1102050:intron 55.0%
!! AGGCAGAGTGTTTGGTGCAG+AGG - chr7_3:33962150-33962169 Msa1102050:exon 55.0%
TGGTGCAGAGGATTCCTGGT+AGG - chr7_3:33962162-33962181 Msa1102050:five_prime_UTR 55.0%
GGTGCAGAGGATTCCTGGTA+GGG - chr7_3:33962163-33962182 Msa1102050:five_prime_UTR 55.0%
GTGCAGAGGATTCCTGGTAG+GGG - chr7_3:33962164-33962183 Msa1102050:five_prime_UTR 55.0%
TCCTGGTAGGGGATTCCATG+TGG - chr7_3:33962175-33962194 Msa1102050:five_prime_UTR 55.0%
TCCACATGGAATCCCCTACC+AGG + chr7_3:33962179-33962198 None:intergenic 55.0%
TCTTCCTCACACGGTAGCGC+CGG - chr7_3:33960301-33960320 Msa1102050:CDS 60.0%
! GTTTTTGTTGGCCGCAGCGC+CGG + chr7_3:33960353-33960372 None:intergenic 60.0%
GTCCTCTGCTGCAGATGGTG+AGG + chr7_3:33961087-33961106 None:intergenic 60.0%
! CGGTGGCGGCGAAGATGTAT+CGG - chr7_3:33961143-33961162 Msa1102050:CDS 60.0%
GTGCGCGTGTTCCGGATTAC+CGG + chr7_3:33961229-33961248 None:intergenic 60.0%
GGTAATCCGGAACACGCGCA+CGG - chr7_3:33961228-33961247 Msa1102050:CDS 60.0%
GTAATCCGGAACACGCGCAC+GGG - chr7_3:33961229-33961248 Msa1102050:CDS 60.0%
GGAACACGCGCACGGGATAT+TGG - chr7_3:33961236-33961255 Msa1102050:CDS 60.0%
TCGCAATCGCGTAGTGGCTG+CGG + chr7_3:33961750-33961769 None:intergenic 60.0%
!! ATCGGTAGAAGCGCCGCCTC+CGG + chr7_3:33960323-33960342 None:intergenic 65.0%
ATGGGGAACCCTGGAAGCGG+TGG - chr7_3:33961126-33961145 Msa1102050:CDS 65.0%
ACGCGCACGGGATATTGGCG+CGG - chr7_3:33961241-33961260 Msa1102050:CDS 65.0%
TTTGGGCCGTTTGCGCTCGC+AGG - chr7_3:33962049-33962068 Msa1102050:intron 65.0%
! TCCTCACACGGTAGCGCCGG+AGG - chr7_3:33960304-33960323 Msa1102050:CDS 70.0%
! TCACACGGTAGCGCCGGAGG+CGG - chr7_3:33960307-33960326 Msa1102050:CDS 70.0%
!! CGCAGCGCCGGTGGTGCTAT+CGG + chr7_3:33960341-33960360 None:intergenic 70.0%
CGATAGCACCACCGGCGCTG+CGG - chr7_3:33960339-33960358 Msa1102050:CDS 70.0%
! TTTGTTGGCCGCAGCGCCGG+TGG + chr7_3:33960350-33960369 None:intergenic 70.0%
GGGAACCCTGGAAGCGGTGG+CGG - chr7_3:33961129-33961148 Msa1102050:CDS 70.0%
CTTCGCCGCCACCGCTTCCA+GGG + chr7_3:33961137-33961156 None:intergenic 70.0%
TCTTCGCCGCCACCGCTTCC+AGG + chr7_3:33961138-33961157 None:intergenic 70.0%
GCCTCCGGCGCTACCGTGTG+AGG + chr7_3:33960308-33960327 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 33959679 33962271 33959679 ID=Msa1102050;Name=Msa1102050
chr7_3 mRNA 33959679 33962271 33959679 ID=Msa1102050-mRNA-1;Parent=Msa1102050;Name=Msa1102050-mRNA-1;_AED=0.28;_eAED=0.28;_QI=116|1|0.5|1|0|0.5|2|0|736
chr7_3 exon 33959679 33961880 33959679 ID=Msa1102050-mRNA-1:exon:7237;Parent=Msa1102050-mRNA-1
chr7_3 exon 33962147 33962271 33962147 ID=Msa1102050-mRNA-1:exon:7236;Parent=Msa1102050-mRNA-1
chr7_3 five_prime_UTR 33962156 33962271 33962156 ID=Msa1102050-mRNA-1:five_prime_utr;Parent=Msa1102050-mRNA-1
chr7_3 CDS 33962147 33962155 33962147 ID=Msa1102050-mRNA-1:cds;Parent=Msa1102050-mRNA-1
chr7_3 CDS 33959679 33961880 33959679 ID=Msa1102050-mRNA-1:cds;Parent=Msa1102050-mRNA-1
Gene Sequence

>Msa1102050

ATGAATGAGATGAAGGCTATGCCCTTACCCTTTGAAGAATACATAGGAAAAGGTGTGTTAGATTTTGGTTCAAGTGTTGTTGCTTCTTCAGATTCATATTTGTTTTCTCAACAGCAAGAACGGTTTTTGCAAAGGTGGAGGGAAAATTGTTGCTATGCGGGCATTGAGCCCAATTCTGTTGTTGTTTTTGACCTCAAAAAACCAAATCAACAAACCACTCCTACTTCATCCTCAACACTGTCTTCCTCACACGGTAGCGCCGGAGGCGGCGCTTCTACCGATAGCACCACCGGCGCTGCGGCCAACAAAAACATACCACAAATTGAAGGTAAAAGATGTGGAATGGAGGATTGGGAGAGTGTGTTATCTGAATCACCAAGTCAAGATCAAGATCATTCCATATTGAAATTGATAATGGAAGATATTGAAGATGCATCTATGGGATTAAGCAAGCTTTTACAAGTTGGAACTAGTAATTCTCATTCTCAACAAGATGTTGAATTCAATGGTTTTAGTTTTATGGATCAACAAAGTTCTGTACTTGACCCTATTTCTTCAAATGGTAACTTTGTAACTAGCATTGATTCTTCTTCTGTTGCTGCTACCACTACCACTGCTACTGCTGCTGAGATTTGTTCTGATTTCCCTTTTGGTAGTAGAGGGATGAATCAAATTCAAAACCCTAATTTCAGTTCTTCACAAGTTTCACTTTCTCATGGTGGTTTGTTTCATCAGCATCAACAACAATCAATTGGGTCTCTTGATGAGAAGCTACCTCATCAGTTTGTTATGAACCAAAACCAAGCTCAGTTTATACCTAACCCTAGTTTGGTTTTTCCTTTCACACACTCTCAGCTGCAAGAAAACCGAGAGATTCAGCTTCAGCCTCCAGCTAAAAGACTCAATTGTGGAACAAATTATGAAATTCCGAAGATACCCTTCTTGGATTCGGGTCAAGAGATGTTTCTTAGGAGGCAACAACAGCATCAGCAACAGCAACATCAGCAGCAGCTTCAACTGCTTCCTCACCATCTGCAGCAGAGGACAATGGCGCCTAAGCAGAAAATGGGGAACCCTGGAAGCGGTGGCGGCGAAGATGTATCGGCTCATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTCAAGGCTGCAGAACTTATAGACGCCGGTAATCCGGAACACGCGCACGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATGGGGAAGCCTTTTCAAAGGGCTGCCTTTTATTTTAAGGAGGCATTTCAATTGCTTCTTCAATCAAATGTCAACAACAGCAACAACAACAGCTTTTCACCAACTAGCCTCTTGCTCAAGATTGGTGCTTATAAATCATTCTCAGAAATCTCACCTGTTCTGCAGTTTTCAAATTTCACTTCCAACCAAGCATTGCTTGAAGCTGTGGAAGGTTTCGATCGAATTCATATAATAGATTTTGATATTGGTTTTGGTGGACAATGGTCTTCATTTATGCAGGAGTTAGCACTAAGGAATGGTGGTGCACCTGCACTCAAGATCACTGCATTTGTTTCGCCCTCACACCACGACGAAATCGAGCTTAGTTTCACTAACGAGAATCTGAAGCAATATGCTGGTGAAATTAACATGTCATTTGAGCTCGAAATTCTGACACTTGAGTCTCTGAATTCTGTTTCGTGGCCGCAGCCACTACGCGATTGCGAAGCAGTTGTGGTTAACTTGCCTATTTGCTCTTTCTCAAATTACCCTTCATACCTGCCTTTAGTGCTTCGATTCGTGAAGCAGCTAATGCCTAAAATTGTCGTAACATTGGATAGGAGTTGTGATCGAACGGATGCACCGTTTCCTCAGCATATGATTTTTGCACTCCAGTCTTATTCCGGTTTGCTTGAATCACTTGATGCTGTTAGTGTTAATGTCCACCCGGATGTCCTTCAGATGATCGAGAAATACTATCTTCAACCGGCAGTTGAGAAGCTTGTTTTGGGCCGTTTGCGCTCGCAGGATAGAACACTTCCCTGGAAAAACCTACTCTTGTCATCAGGGTTCTCGCCGTTGACATTTAGTAACTTCACAGAGTCGCAGGCAGAGTGTTTGGTGCAGAGGATTCCTGGTAGGGGATTCCATGTGGAGAAGAAGCAGAACTCACTTGTCTTGTGTTGGCAAAGGAAGGATCTCATCTCGGTTTCAACTTGGAGATGCTGA
Protein sequence

>Msa1102050

MNEMKAMPLPFEEYIGKGVLDFGSSVVASSDSYLFSQQQERFLQRWRENCCYAGIEPNSVVVFDLKKPNQQTTPTSSSTLSSSHGSAGGGASTDSTTGAAANKNIPQIEGKRCGMEDWESVLSESPSQDQDHSILKLIMEDIEDASMGLSKLLQVGTSNSHSQQDVEFNGFSFMDQQSSVLDPISSNGNFVTSIDSSSVAATTTTATAAEICSDFPFGSRGMNQIQNPNFSSSQVSLSHGGLFHQHQQQSIGSLDEKLPHQFVMNQNQAQFIPNPSLVFPFTHSQLQENREIQLQPPAKRLNCGTNYEIPKIPFLDSGQEMFLRRQQQHQQQQHQQQLQLLPHHLQQRTMAPKQKMGNPGSGGGEDVSAHQFQQAIIDQLFKAAELIDAGNPEHAHGILARLNHQISPMGKPFQRAAFYFKEAFQLLLQSNVNNSNNNSFSPTSLLLKIGAYKSFSEISPVLQFSNFTSNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPSHHDEIELSFTNENLKQYAGEINMSFELEILTLESLNSVSWPQPLRDCEAVVVNLPICSFSNYPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHMIFALQSYSGLLESLDAVSVNVHPDVLQMIEKYYLQPAVEKLVLGRLRSQDRTLPWKNLLLSSGFSPLTFSNFTESQAECLVQRIPGRGFHVEKKQNSLVLCWQRKDLISVSTWRC*