AlfalfaGEDB | Msa1101970

M. sativa cultivar zhongmu-4 / Msa1101970

KEGG: -
GO: GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007623 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009889 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048511 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0060560 GO:0065007 GO:0071695 GO:0071840 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1101970	XP_039683591.1	95.541	740	22	3	1	737	1	732	0.0	1444

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1101970	sp\|O81316\|SCL6_ARATH	57.216	388	138	10	353	737	193	555	3.66e-138	421

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1101970	A0A396GWJ9	95.541	740	22	3	1	737	1	732	0.0	1444

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TFs/TRs:

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Gene ID	Type	Classification
Msa1101970	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0497500	Msa1101970	0.810978	8.807044e-51	-8.615850e-47
Msa1101970	Msa1102050	0.890114	1.320265e-73	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1101970	MtrunA17_Chr7g0230771	95.541	740	22	3	1	737	1	732	0.0	1444
Msa1101970	MtrunA17_Chr7g0230731	95.000	740	23	4	1	737	1	729	0.0	1433
Msa1101970	MtrunA17_Chr4g0012071	53.532	538	193	11	212	737	60	552	2.13e-177	518
Msa1101970	MtrunA17_Chr8g0373561	35.676	370	221	11	378	737	180	542	7.52e-59	208
Msa1101970	MtrunA17_Chr2g0306641	31.579	380	226	9	377	736	122	487	1.59e-42	161
Msa1101970	MtrunA17_Chr3g0110971	28.421	380	244	7	377	736	216	587	1.62e-36	145
Msa1101970	MtrunA17_Chr8g0376381	28.800	375	234	10	377	736	166	522	2.56e-36	144
Msa1101970	MtrunA17_Chr7g0224271	26.712	438	269	11	325	737	264	674	5.11e-36	145
Msa1101970	MtrunA17_Chr4g0038761	30.081	369	230	13	383	736	87	442	4.19e-35	139
Msa1101970	MtrunA17_Chr3g0101141	27.056	377	248	9	379	736	174	542	1.97e-32	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1101970	AT4G00150.1	57.216	388	138	10	353	737	193	555	3.72e-139	421
Msa1101970	AT2G45160.1	48.283	466	200	16	295	737	193	640	2.56e-122	380
Msa1101970	AT3G60630.1	45.149	505	201	17	274	737	154	623	3.47e-112	353
Msa1101970	AT4G36710.1	32.620	374	226	12	378	736	123	485	1.20e-54	196
Msa1101970	AT2G01570.1	29.570	372	239	9	377	736	221	581	2.87e-34	139
Msa1101970	AT5G17490.1	29.600	375	234	13	377	736	157	516	7.16e-32	131
Msa1101970	AT5G66770.1	28.499	393	258	13	359	736	200	584	8.08e-32	131
Msa1101970	AT3G03450.1	27.586	377	245	10	377	736	180	545	1.28e-31	130
Msa1101970	AT2G04890.1	26.005	373	246	8	381	736	54	413	6.42e-30	123
Msa1101970	AT1G14920.1	27.056	377	242	10	377	736	169	529	1.31e-29	124

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Find 172 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGCTTCTCAACTGC+CGG	0.524789	7_3:+33392122	None:intergenic
AAAACCTACTCTTGTCATCA+GGG	0.582681	7_3:-33392061	Msa1101970:CDS
AAAATCATGTGCTGAGGAAA+CGG	0.554908	7_3:+33392245	None:intergenic
AAAATGGGGAACCCTGGAAG+CGG	0.610138	7_3:-33393028	Msa1101970:CDS
AAAGATGTGGAATGGAGGAT+TGG	0.456441	7_3:-33393753	Msa1101970:CDS
AAATGCCTCCTTAAAATAAA+AGG	0.302232	7_3:+33392841	None:intergenic
AAATTGTCGTAACATTGGAT+AGG	0.615531	7_3:-33392289	Msa1101970:CDS
AAATTTGCAAACTGCAGAAC+AGG	0.415407	7_3:+33392713	None:intergenic
AACTAAGCTCGATTTCGTCG+TGG	0.700452	7_3:+33392522	None:intergenic
AAGATACCCTTCTTGGATTC+GGG	0.361865	7_3:-33393160	Msa1101970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTGTGTTTGAGTGAAAAA+AGG	-	chr7_3:33391885-33391904	Msa1101970:exon	30.0%
ATGAAGAAGAAGAATGAATG+AGG	-	chr7_3:33391926-33391945	Msa1101970:CDS	30.0%
TGTTTGAAAGAAACTTGTGT+TGG	-	chr7_3:33392173-33392192	Msa1101970:CDS	30.0%
ATGTATTCTTCAAAGGGTAA+GGG	+	chr7_3:33392229-33392248	None:intergenic	30.0%
TATGTATTCTTCAAAGGGTA+AGG	+	chr7_3:33392230-33392249	None:intergenic	30.0%
GTCAAAAACAACAACAGAAT+TGG	+	chr7_3:33392377-33392396	None:intergenic	30.0%
AGATATTGAAGATGCATCTA+TGG	-	chr7_3:33392633-33392652	Msa1101970:CDS	30.0%
GATATTGAAGATGCATCTAT+GGG	-	chr7_3:33392634-33392653	Msa1101970:CDS	30.0%
CAACAAGATGTTGAATTCAA+TGG	-	chr7_3:33392700-33392719	Msa1101970:CDS	30.0%
CTTGTGAAGAACTGAAATTA+GGG	+	chr7_3:33392891-33392910	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	33391624	33394696	33391624	ID=Msa1101970;Name=Msa1101970
chr7_3	mRNA	33391624	33394696	33391624	ID=Msa1101970-mRNA-1;Parent=Msa1101970;Name=Msa1101970-mRNA-1;_AED=0.20;_eAED=0.20;_QI=315\|1\|1\|1\|0\|0.5\|2\|278\|737
chr7_3	exon	33391624	33394106	33391624	ID=Msa1101970-mRNA-1:exon:7204;Parent=Msa1101970-mRNA-1
chr7_3	exon	33394373	33394696	33394373	ID=Msa1101970-mRNA-1:exon:7203;Parent=Msa1101970-mRNA-1
chr7_3	five_prime_UTR	33394382	33394696	33394382	ID=Msa1101970-mRNA-1:five_prime_utr;Parent=Msa1101970-mRNA-1
chr7_3	CDS	33394373	33394381	33394373	ID=Msa1101970-mRNA-1:cds;Parent=Msa1101970-mRNA-1
chr7_3	CDS	33391902	33394106	33391902	ID=Msa1101970-mRNA-1:cds;Parent=Msa1101970-mRNA-1
chr7_3	three_prime_UTR	33391624	33391901	33391624	ID=Msa1101970-mRNA-1:three_prime_utr;Parent=Msa1101970-mRNA-1

Gene Sequence

>Msa1101970

ATGAATGAGATGAAGGCTATGCCCTTACCCTTTGAAGAATACATAGGAAAAGGTGTGTTAGATTTTGGTTCAAGTGTTGTTGCTTCTTCAGATTCATATTTGTTTTCTCAACAGCAAGAACGGTTTTTGCAAAGGTGGAGGGAAAATTGTTGCTATGCGGGCATTGAGCCCAATTCTGTTGTTGTTTTTGACCTCAAAAAACCAAATCAACAAACCACTCCTACTTCATCCTCAACACTGTCTTCCTCACACGGTAGCGCCGGAGGCGGCGCTTCTACCGATAGCACCACCGGCGCAAAGGATAACAATACCAACAGAAACATACCACAAGCTGAAGGTAAAAGATGTGGAATGGAGGATTGGGAGAGTGTGTTATCTGAATCACCAAGTCAAGATCAAGATCATTCCATATTGAAATTGATAATGGAAGATATTGAAGATGCATCTATGGGATTAAGCAAGCTTTTACAAGTTGGAACTAGTAATTCTCATTCTCAACAAGATGTTGAATTCAATGGTTTTAGTTTTATGGATCAACAAAGTTCTGTACTTGACCCTATTTCTTCAAATGGTAACTTTGTAACTAGCATTGATTCTTCTTCTGTTGTTGCTACCACTGCTACTGCTGCTGAGATTTGTTCTGATTTCCCTTTTGGTAGTAGAGGGATGAATCAAATTCAAAACCCTAATTTCAGTTCTTCACAAGTTTCACTTTCTCATGGTGGTTTGTTTCATCAGCATCAACAACAATCAATTGGGTCTCTTGATGAGAAGCTACCTCATCAGTTTGTTATGAACCAAAACCAAGCTCAGTTTATACCTAACCCTAGTTTGGTTTTTCCTTTCACACACTCTCAGCTGCAAGAAAACCGAGAGATTCAGCTTCAGCCTCCAGCTAAAAGACTCAATTGTGGAACAAATTATGAAATTCCGAAGATACCCTTCTTGGATTCGGGTCAAGAGATGTTTCTTAGGAGGCAACAACAGCATCAGCAACAGCAACATCAGCAGCAGCTTCAACTGCTTCCTCACCATCTGCAGCAGAGGACAATGGCGCCTAAGCAGAAAATGGGGAACCCTGGAAGCGGTGGCGGCGAAGATGTATCGGCTCATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTCAAGGCTGCAGAACTTATAGACGCCGGTAATCCGGAACACGCGCACGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATGGGGAAGCCTTTTCAAAGGGCTGCCTTTTATTTTAAGGAGGCATTTCAATTGCTTCTTCAATCAAATGTCAACAACAGCAACAACAACAGCTTTTCACCAACTAGCCTCTTGCTCAAGATTGGTGCTTATAAATCATTCTCAGAAATCTCACCTGTTCTGCAGTTTGCAAATTTCACTTCCAACCAAGCATTGCTTGAAGCTGTGGAAGGTTTCGATCGAATTCATATAATAGATTTTGATATTGGTTTTGGTGGACAATGGTCTTCATTTATGCAGGAGTTAGCACTAAGGAATGGTGGTGCACCTGCACTCAAGATCACTGCATTTGTTTCGCCCTCACACCACGACGAAATCGAGCTTAGTTTCACTAACGAGAATCTGAAGCAATATGCTGGTGAAATTAACATGTCATTTGAGCTCGAAATTCTGACACTTGAGTCTCTGAATTCTGTTTCGTGGCCGCAGCCACTACGCGATTGCGAAGCAGTTGTGGTTAACTTGCCTATTTGCTCTTTCTCAAATTACCCTTCATACCTGCCTTTAGTGCTTCGATTCGTGAAGCAGCTAATGCCTAAAATTGTCGTAACATTGGATAGGAGTTGTGATCGAACGGATGCACCGTTTCCTCAGCACATGATTTTTGCACTCCAGTCTTATTCCAGTTTGCTTGAATCACTTGATGCTGTTGGTGTTAATGTCCACCCGGATGTCCTTCAGATGATCGAGAAATACTATCTTCAACCGGCAGTTGAGAAGCTTGTTTTGGGCCGTTTGCGCTCGCAGGATAGAACACTTCCCTGGAAAAACCTACTCTTGTCATCAGGGTTCTCGCCGTTGACATTTAGTAACTTCACAGAGTCGCAGGCAGAGTGTTTGGTGCAGAGGATTCCTGGTAGGGGATTCCATGTGGAGAAGAAGCAGAACTCACTTGTCTTGTGTTGGCAAAGGAAGGATCTCATCTCGGTTTCAACTTGGAGATGCTGA

Protein sequence

>Msa1101970

MNEMKAMPLPFEEYIGKGVLDFGSSVVASSDSYLFSQQQERFLQRWRENCCYAGIEPNSVVVFDLKKPNQQTTPTSSSTLSSSHGSAGGGASTDSTTGAKDNNTNRNIPQAEGKRCGMEDWESVLSESPSQDQDHSILKLIMEDIEDASMGLSKLLQVGTSNSHSQQDVEFNGFSFMDQQSSVLDPISSNGNFVTSIDSSSVVATTATAAEICSDFPFGSRGMNQIQNPNFSSSQVSLSHGGLFHQHQQQSIGSLDEKLPHQFVMNQNQAQFIPNPSLVFPFTHSQLQENREIQLQPPAKRLNCGTNYEIPKIPFLDSGQEMFLRRQQQHQQQQHQQQLQLLPHHLQQRTMAPKQKMGNPGSGGGEDVSAHQFQQAIIDQLFKAAELIDAGNPEHAHGILARLNHQISPMGKPFQRAAFYFKEAFQLLLQSNVNNSNNNSFSPTSLLLKIGAYKSFSEISPVLQFANFTSNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPSHHDEIELSFTNENLKQYAGEINMSFELEILTLESLNSVSWPQPLRDCEAVVVNLPICSFSNYPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHMIFALQSYSSLLESLDAVGVNVHPDVLQMIEKYYLQPAVEKLVLGRLRSQDRTLPWKNLLLSSGFSPLTFSNFTESQAECLVQRIPGRGFHVEKKQNSLVLCWQRKDLISVSTWRC*