AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1101970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101970 MtrunA17_Chr7g0230771 95.541 740 22 3 1 737 1 732 0.0 1444
Msa1101970 MtrunA17_Chr7g0230731 95.000 740 23 4 1 737 1 729 0.0 1433
Msa1101970 MtrunA17_Chr4g0012071 53.532 538 193 11 212 737 60 552 2.13e-177 518
Msa1101970 MtrunA17_Chr8g0373561 35.676 370 221 11 378 737 180 542 7.52e-59 208
Msa1101970 MtrunA17_Chr2g0306641 31.579 380 226 9 377 736 122 487 1.59e-42 161
Msa1101970 MtrunA17_Chr3g0110971 28.421 380 244 7 377 736 216 587 1.62e-36 145
Msa1101970 MtrunA17_Chr8g0376381 28.800 375 234 10 377 736 166 522 2.56e-36 144
Msa1101970 MtrunA17_Chr7g0224271 26.712 438 269 11 325 737 264 674 5.11e-36 145
Msa1101970 MtrunA17_Chr4g0038761 30.081 369 230 13 383 736 87 442 4.19e-35 139
Msa1101970 MtrunA17_Chr3g0101141 27.056 377 248 9 379 736 174 542 1.97e-32 132
Msa1101970 MtrunA17_Chr5g0424131 29.949 394 232 16 377 737 118 500 3.40e-30 125
Msa1101970 MtrunA17_Chr4g0039661 29.064 406 264 12 346 736 159 555 2.27e-29 123
Msa1101970 MtrunA17_Chr5g0445331 25.469 373 259 7 381 736 162 532 8.28e-29 121
Msa1101970 MtrunA17_Chr3g0125811 26.954 371 252 8 381 736 204 570 1.05e-27 118
Msa1101970 MtrunA17_Chr3g0114841 27.182 401 236 16 377 737 117 501 1.07e-27 117
Msa1101970 MtrunA17_Chr2g0319091 26.031 388 263 9 366 735 197 578 1.84e-26 114
Msa1101970 MtrunA17_Chr7g0245601 26.776 366 242 9 383 736 441 792 7.98e-26 114
Msa1101970 MtrunA17_Chr5g0447691 23.099 355 256 7 396 736 193 544 2.06e-25 111
Msa1101970 MtrunA17_Chr8g0383981 26.542 373 253 9 374 735 133 495 2.56e-25 110
Msa1101970 MtrunA17_Chr1g0159461 26.596 376 247 12 381 736 226 592 2.96e-25 111
Msa1101970 MtrunA17_Chr2g0290241 24.804 383 252 11 379 737 56 426 9.54e-25 107
Msa1101970 MtrunA17_Chr4g0057291 23.810 378 264 7 377 735 289 661 1.84e-24 108
Msa1101970 MtrunA17_Chr1g0183641 28.533 375 238 16 377 737 120 478 6.75e-24 105
Msa1101970 MtrunA17_Chr4g0076091 23.885 381 254 9 381 737 176 544 3.23e-23 104
Msa1101970 MtrunA17_Chr5g0403741 30.736 231 147 6 514 737 51 275 3.66e-23 100
Msa1101970 MtrunA17_Chr4g0057891 25.258 388 251 12 377 737 146 521 4.03e-23 103
Msa1101970 MtrunA17_Chr2g0328431 23.450 371 261 9 381 735 290 653 3.82e-19 92.0
Msa1101970 MtrunA17_Chr8g0357601 22.798 386 260 10 377 736 179 552 5.59e-19 91.3
Msa1101970 MtrunA17_Chr2g0294471 23.454 388 272 10 366 736 197 576 4.00e-18 88.6
Msa1101970 MtrunA17_Chr2g0294461 23.885 381 269 9 376 736 206 585 4.36e-18 88.6
Msa1101970 MtrunA17_Chr1g0200401 25.935 401 236 16 377 735 77 458 4.63e-18 87.8
Msa1101970 MtrunA17_Chr2g0328381 24.933 373 254 11 381 735 276 640 5.47e-18 88.6
Msa1101970 MtrunA17_Chr4g0031741 23.848 369 263 7 381 735 285 649 1.27e-17 87.4
Msa1101970 MtrunA17_Chr7g0238891 22.487 378 261 6 381 736 373 740 1.91e-17 87.0
Msa1101970 MtrunA17_Chr7g0270031 25.337 371 256 11 381 736 190 554 2.06e-17 86.3
Msa1101970 MtrunA17_Chr4g0031721 22.034 413 282 10 351 735 283 683 4.12e-17 85.9
Msa1101970 MtrunA17_Chr2g0328391 22.835 381 256 9 381 735 300 668 4.62e-17 85.5
Msa1101970 MtrunA17_Chr2g0328341 23.057 386 245 10 381 735 273 637 7.83e-17 84.7
Msa1101970 MtrunA17_Chr2g0329591 23.274 391 251 10 381 736 75 451 2.05e-16 82.4
Msa1101970 MtrunA17_Chr2g0328411 21.981 414 289 11 349 735 247 653 2.39e-16 83.2
Msa1101970 MtrunA17_Chr4g0031731 22.703 370 264 9 381 731 255 621 1.92e-15 80.1
Msa1101970 MtrunA17_Chr4g0031701 21.680 369 269 7 381 731 255 621 1.46e-14 77.4
Msa1101970 MtrunA17_Chr4g0038851 33.529 170 105 2 357 518 19 188 1.84e-14 76.6
Msa1101970 MtrunA17_Chr4g0031711 21.716 373 272 7 381 735 362 732 3.21e-14 76.6
Msa1101970 MtrunA17_Chr2g0328401 22.000 350 250 7 381 714 291 633 5.76e-14 75.5
Msa1101970 MtrunA17_Chr5g0396491 27.692 195 135 2 357 549 33 223 2.98e-13 72.8
Msa1101970 MtrunA17_Chr5g0401131 21.932 383 265 10 381 736 115 490 1.58e-12 70.5
Msa1101970 MtrunA17_Chr2g0328361 24.533 375 228 14 381 735 275 614 2.48e-12 70.5
Msa1101970 MtrunA17_Chr2g0328371 24.400 250 171 6 450 686 2 246 3.45e-12 67.4
Msa1101970 MtrunA17_Chr1g0194621 23.457 405 269 16 361 736 126 518 4.79e-12 69.3
Msa1101970 MtrunA17_Chr3g0085681 31.034 145 90 2 381 519 26 166 4.91e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101970 AT4G00150.1 57.216 388 138 10 353 737 193 555 3.72e-139 421
Msa1101970 AT2G45160.1 48.283 466 200 16 295 737 193 640 2.56e-122 380
Msa1101970 AT3G60630.1 45.149 505 201 17 274 737 154 623 3.47e-112 353
Msa1101970 AT4G36710.1 32.620 374 226 12 378 736 123 485 1.20e-54 196
Msa1101970 AT2G01570.1 29.570 372 239 9 377 736 221 581 2.87e-34 139
Msa1101970 AT5G17490.1 29.600 375 234 13 377 736 157 516 7.16e-32 131
Msa1101970 AT5G66770.1 28.499 393 258 13 359 736 200 584 8.08e-32 131
Msa1101970 AT3G03450.1 27.586 377 245 10 377 736 180 545 1.28e-31 130
Msa1101970 AT2G04890.1 26.005 373 246 8 381 736 54 413 6.42e-30 123
Msa1101970 AT1G14920.1 27.056 377 242 10 377 736 169 529 1.31e-29 124
Msa1101970 AT5G41920.1 25.122 410 266 10 343 736 16 400 3.02e-29 121
Msa1101970 AT3G54220.1 27.778 360 247 8 383 735 296 649 3.77e-29 124
Msa1101970 AT5G48150.1 24.731 372 260 8 381 736 123 490 5.09e-29 122
Msa1101970 AT5G48150.4 24.731 372 260 8 381 736 123 490 5.09e-29 122
Msa1101970 AT5G48150.2 24.731 372 260 8 381 736 123 490 5.09e-29 122
Msa1101970 AT5G48150.3 24.731 372 260 8 381 736 123 490 5.09e-29 122
Msa1101970 AT1G66350.1 26.146 371 249 10 377 737 152 507 1.97e-28 120
Msa1101970 AT3G50650.1 29.067 375 221 12 390 736 185 542 2.54e-28 120
Msa1101970 AT4G08250.1 29.288 379 242 14 377 735 104 476 2.21e-27 117
Msa1101970 AT1G50600.3 24.194 372 261 7 381 736 160 526 3.46e-27 117
Msa1101970 AT1G50600.1 24.194 372 261 7 381 736 231 597 9.14e-27 116
Msa1101970 AT1G50600.2 24.194 372 261 7 381 736 235 601 9.94e-27 116
Msa1101970 AT4G17230.1 25.789 380 245 7 381 736 159 525 1.87e-26 114
Msa1101970 AT4G17230.2 25.789 380 245 7 381 736 159 525 1.87e-26 114
Msa1101970 AT1G21450.1 24.574 411 272 11 354 736 193 593 3.82e-26 114
Msa1101970 AT5G59450.1 23.571 420 280 10 347 736 190 598 2.50e-23 105
Msa1101970 AT1G55580.1 24.771 327 220 6 426 736 129 445 1.21e-19 92.8
Msa1101970 AT1G63100.1 24.495 396 246 14 377 735 249 628 1.45e-19 94.0
Msa1101970 AT1G63100.2 24.051 395 249 12 377 735 274 653 1.63e-19 94.0
Msa1101970 AT1G07520.1 21.067 375 269 8 384 735 322 692 4.03e-18 89.4
Msa1101970 AT1G07520.3 21.067 375 269 8 384 735 323 693 4.04e-18 89.4
Msa1101970 AT1G07520.2 21.067 375 269 8 384 735 158 528 4.79e-18 88.6
Msa1101970 AT1G07520.4 21.067 375 269 8 384 735 158 528 4.79e-18 88.6
Msa1101970 AT3G46600.1 21.851 389 280 7 369 736 194 579 4.68e-17 85.9
Msa1101970 AT3G46600.3 21.851 389 280 7 369 736 162 547 1.66e-16 84.0
Msa1101970 AT3G46600.2 21.892 370 272 6 381 736 5 371 3.14e-16 81.6
Msa1101970 AT1G07530.1 22.812 377 260 9 381 735 397 764 5.11e-16 82.8
Msa1101970 AT1G50420.1 29.381 194 117 5 377 559 54 238 6.94e-15 78.6
Msa1101970 AT4G37650.1 22.081 394 258 10 381 736 147 529 1.17e-14 77.8
Msa1101970 AT5G52510.1 24.522 314 191 11 458 736 338 640 2.47e-13 73.9
Msa1101970 AT2G29065.1 21.220 377 273 7 381 735 253 627 1.51e-12 71.6

Find 172 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTGAAGAACTGAAATT+AGG 0.187840 7_3:+33393409 None:intergenic
GGAAAAGGTGTGTTAGATTT+TGG 0.194202 7_3:-33394048 Msa1101970:CDS
ATGTAATGTAACAAAATAAA+TGG 0.230568 7_3:+33394481 None:intergenic
GGCAGTTGAGAAGCTTGTTT+TGG 0.246331 7_3:-33392120 Msa1101970:CDS
AAGTTACCATTTGAAGAAAT+AGG 0.249425 7_3:+33393538 None:intergenic
CATGAAAACCACATCAATTT+AGG 0.258965 7_3:+33391609 None:intergenic
ATTTGTTCTGATTTCCCTTT+TGG 0.265105 7_3:-33393460 Msa1101970:CDS
TCTTCGCCGCCACCGCTTCC+AGG 0.267033 7_3:+33393016 None:intergenic
ATGCTAATTTGTCTATGTTT+AGG 0.271802 7_3:-33391785 Msa1101970:three_prime_UTR
TTCCATTATCAATTTCAATA+TGG 0.276508 7_3:+33393687 None:intergenic
AATTCCGAAGATACCCTTCT+TGG 0.278051 7_3:-33393167 Msa1101970:CDS
TTCCATATTGAAATTGATAA+TGG 0.285700 7_3:-33393689 Msa1101970:CDS
GCTTCCCCATAGGAGAAATT+TGG 0.291304 7_3:+33392879 None:intergenic
CTCACTCTTGTGTTTCTCTC+TGG 0.299154 7_3:+33394676 None:intergenic
AAATGCCTCCTTAAAATAAA+AGG 0.302232 7_3:+33392841 None:intergenic
GTAGGAGTGGTTTGTTGATT+TGG 0.323080 7_3:+33393892 None:intergenic
AGATATTGAAGATGCATCTA+TGG 0.323147 7_3:-33393665 Msa1101970:CDS
GTATAAACTGAGCTTGGTTT+TGG 0.329115 7_3:+33393296 None:intergenic
GGAACACGCGCACGGGATAT+TGG 0.339508 7_3:-33392915 Msa1101970:CDS
AATGGCGCCTAAGCAGAAAA+TGG 0.339684 7_3:-33393044 Msa1101970:CDS
GAAGATACCCTTCTTGGATT+CGG 0.340738 7_3:-33393161 Msa1101970:CDS
GTTTATACCTAACCCTAGTT+TGG 0.345137 7_3:-33393281 Msa1101970:CDS
CAACAAGATGTTGAATTCAA+TGG 0.350188 7_3:-33393598 Msa1101970:CDS
CTTGTGAAGAACTGAAATTA+GGG 0.351845 7_3:+33393410 None:intergenic
CAGCATCAACAACAATCAAT+TGG 0.353717 7_3:-33393358 Msa1101970:CDS
AAGATACCCTTCTTGGATTC+GGG 0.361865 7_3:-33393160 Msa1101970:CDS
TGTTTGGTGCAGAGGATTCC+TGG 0.364499 7_3:-33391993 Msa1101970:CDS
AGTTACCATTTGAAGAAATA+GGG 0.368741 7_3:+33393539 None:intergenic
CGGGTCAAGAGATGTTTCTT+AGG 0.388186 7_3:-33393141 Msa1101970:CDS
ATCGGTAGAAGCGCCGCCTC+CGG 0.394887 7_3:+33393834 None:intergenic
CAATCACCAAATTTCTCCTA+TGG 0.395643 7_3:-33392885 Msa1101970:CDS
TATGTATTCTTCAAAGGGTA+AGG 0.404339 7_3:+33394071 None:intergenic
ACTTATAGACGCCGGTAATC+CGG 0.404547 7_3:-33392936 Msa1101970:CDS
CTTGACCCTATTTCTTCAAA+TGG 0.407880 7_3:-33393544 Msa1101970:CDS
TTCTATCCTGCGAGCGCAAA+CGG 0.414907 7_3:+33392096 None:intergenic
AAATTTGCAAACTGCAGAAC+AGG 0.415407 7_3:+33392713 None:intergenic
GTGCGCGTGTTCCGGATTAC+CGG 0.417521 7_3:+33392925 None:intergenic
GGGAACCCTGGAAGCGGTGG+CGG 0.418143 7_3:-33393022 Msa1101970:CDS
AGTCTCTGAATTCTGTTTCG+TGG 0.422058 7_3:-33392427 Msa1101970:CDS
AATATCCCGTGCGCGTGTTC+CGG 0.422409 7_3:+33392917 None:intergenic
AAGATGTGGAATGGAGGATT+GGG 0.422443 7_3:-33393752 Msa1101970:CDS
TTTGTTATTTCCACTTATGA+TGG 0.424153 7_3:-33391761 Msa1101970:three_prime_UTR
ATGGCGCCTAAGCAGAAAAT+GGG 0.428884 7_3:-33393043 Msa1101970:CDS
AGAGTCGCAGGCAGAGTGTT+TGG 0.429838 7_3:-33392009 Msa1101970:CDS
CTTGAATCACTTGATGCTGT+TGG 0.430566 7_3:-33392197 Msa1101970:CDS
ATGTTTACTTCCATCATAAG+TGG 0.439594 7_3:+33391751 None:intergenic
CCACAGCTTCAAGCAATGCT+TGG 0.439953 7_3:+33392681 None:intergenic
TCGATCATCTGAAGGACATC+CGG 0.441979 7_3:+33392161 None:intergenic
ATCAAGTGATTCAAGCAAAC+TGG 0.442048 7_3:+33392205 None:intergenic
TAATTTGAGAAAGAGCAAAT+AGG 0.442683 7_3:+33392362 None:intergenic
AGCTTGTGGTATGTTTCTGT+TGG 0.443296 7_3:+33393783 None:intergenic
ACTAGCCTCTTGCTCAAGAT+TGG 0.445518 7_3:-33392764 Msa1101970:CDS
ATCTCATCTCGGTTTCAACT+TGG 0.447156 7_3:-33391911 Msa1101970:CDS
CTTGCGTTCTCTGCTGTGGA+TGG 0.448501 7_3:+33394610 None:intergenic
TTTCCTATGTATTCTTCAAA+GGG 0.453051 7_3:+33394066 None:intergenic
AAAGATGTGGAATGGAGGAT+TGG 0.456441 7_3:-33393753 Msa1101970:CDS
TTCATCCCTCTACTACCAAA+AGG 0.463150 7_3:+33393445 None:intergenic
TCACAAGTTTCACTTTCTCA+TGG 0.465348 7_3:-33393394 Msa1101970:CDS
GGTGCAGAGGATTCCTGGTA+GGG 0.470286 7_3:-33391988 Msa1101970:CDS
TCGCAATCGCGTAGTGGCTG+CGG 0.474481 7_3:+33392404 None:intergenic
TAAAAGGCAGCCCTTTGAAA+AGG 0.479249 7_3:+33392857 None:intergenic
GCCTAAAATTGTCGTAACAT+TGG 0.480828 7_3:-33392294 Msa1101970:CDS
AGGGAAAATTGTTGCTATGC+GGG 0.481377 7_3:-33393955 Msa1101970:CDS
CTCGATTTCGTCGTGGTGTG+AGG 0.481816 7_3:+33392529 None:intergenic
CGCAGGATAGAACACTTCCC+TGG 0.482072 7_3:-33392085 Msa1101970:CDS
AGCTTCAAGCAATGCTTGGT+TGG 0.488113 7_3:+33392685 None:intergenic
TTTGAAGAATACATAGGAAA+AGG 0.490303 7_3:-33394063 Msa1101970:CDS
GGTTAGGTATAAACTGAGCT+TGG 0.491230 7_3:+33393290 None:intergenic
AGCATCAACAACAATCAATT+GGG 0.491428 7_3:-33393357 Msa1101970:CDS
TTTGGGCCGTTTGCGCTCGC+AGG 0.491743 7_3:-33392102 Msa1101970:CDS
TGGTGCAGAGGATTCCTGGT+AGG 0.496504 7_3:-33391989 Msa1101970:CDS
ACGCGATTGCGAAGCAGTTG+TGG 0.497464 7_3:-33392393 Msa1101970:CDS
TCACACGGTAGCGCCGGAGG+CGG 0.497760 7_3:-33393847 Msa1101970:CDS
AGCACTAAAGGCAGGTATGA+AGG 0.498213 7_3:+33392338 None:intergenic
CTTTGCGCCGGTGGTGCTAT+CGG 0.499180 7_3:+33393816 None:intergenic
ATCTTGAGCAAGAGGCTAGT+TGG 0.505941 7_3:+33392767 None:intergenic
CCATTGTCCTCTGCTGCAGA+TGG 0.506974 7_3:+33393062 None:intergenic
CGAGAAATACTATCTTCAAC+CGG 0.509431 7_3:-33392141 Msa1101970:CDS
AATCACCAAATTTCTCCTAT+GGG 0.509811 7_3:-33392884 Msa1101970:CDS
GAATCCAAGAAGGGTATCTT+CGG 0.510787 7_3:+33393163 None:intergenic
CGGTGGCGGCGAAGATGTAT+CGG 0.512246 7_3:-33393008 Msa1101970:CDS
CGATCATCTGAAGGACATCC+GGG 0.514286 7_3:+33392162 None:intergenic
ACAATGGTCTTCATTTATGC+AGG 0.517675 7_3:-33392609 Msa1101970:CDS
GTGCAGAGGATTCCTGGTAG+GGG 0.518621 7_3:-33391987 Msa1101970:CDS
TTACCCTTTGAAGAATACAT+AGG 0.522370 7_3:-33394069 Msa1101970:CDS
TGTCTTAATTAGCAACTGAA+TGG 0.523386 7_3:-33391717 Msa1101970:three_prime_UTR
AAAACAAGCTTCTCAACTGC+CGG 0.524789 7_3:+33392122 None:intergenic
CCAAGCATTGCTTGAAGCTG+TGG 0.524919 7_3:-33392681 Msa1101970:CDS
CAAGCAAACTGGAATAAGAC+TGG 0.525647 7_3:+33392216 None:intergenic
CTTCGCCGCCACCGCTTCCA+GGG 0.526440 7_3:+33393017 None:intergenic
AGAACTCACTTGTCTTGTGT+TGG 0.527376 7_3:-33391944 Msa1101970:CDS
CACTTGTCTTGTGTTGGCAA+AGG 0.532124 7_3:-33391938 Msa1101970:CDS
TCATCCCTCTACTACCAAAA+GGG 0.532544 7_3:+33393446 None:intergenic
CCTCCTTGCGTTCTCTGCTG+TGG 0.534263 7_3:+33394606 None:intergenic
ATGGGGAACCCTGGAAGCGG+TGG 0.534973 7_3:-33393025 Msa1101970:CDS
TGTCTTGTGTTGGCAAAGGA+AGG 0.536796 7_3:-33391934 Msa1101970:CDS
TAGTAACTTCACAGAGTCGC+AGG 0.538196 7_3:-33392021 Msa1101970:CDS
GACAGTGTTGAGGATGAAGT+AGG 0.538311 7_3:+33393874 None:intergenic
TTGGAGATGCTGAGAGTGAA+GGG 0.538398 7_3:-33391892 Msa1101970:exon
CTCTTGACCCGAATCCAAGA+AGG 0.539089 7_3:+33393153 None:intergenic
TCCACATGGAATCCCCTACC+AGG 0.543648 7_3:+33391975 None:intergenic
ATGAAGAAGAAGAATGAATG+AGG 0.544065 7_3:-33394372 Msa1101970:intron
GATATTGAAGATGCATCTAT+GGG 0.546979 7_3:-33393664 Msa1101970:CDS
CTTGGAGATGCTGAGAGTGA+AGG 0.548025 7_3:-33391893 Msa1101970:exon
ATTGTTATCCTTTGCGCCGG+TGG 0.548468 7_3:+33393807 None:intergenic
AAGCACCAATCTTGAGCAAG+AGG 0.549041 7_3:+33392759 None:intergenic
CTTTGAAAAGGCTTCCCCAT+AGG 0.549307 7_3:+33392869 None:intergenic
CAAGTTTCACTTTCTCATGG+TGG 0.549648 7_3:-33393391 Msa1101970:CDS
AAAATCATGTGCTGAGGAAA+CGG 0.554908 7_3:+33392245 None:intergenic
TTCCTCACCATCTGCAGCAG+AGG 0.556566 7_3:-33393069 Msa1101970:CDS
ATCGGCTCATCAGTTTCAGC+AGG 0.556576 7_3:-33392990 Msa1101970:CDS
TTCACGAATCGAAGCACTAA+AGG 0.557184 7_3:+33392326 None:intergenic
TGTTGAGGATGAAGTAGGAG+TGG 0.560505 7_3:+33393879 None:intergenic
TCGATTTCGTCGTGGTGTGA+GGG 0.560923 7_3:+33392530 None:intergenic
GTCAAGAGATGTTTCTTAGG+AGG 0.562943 7_3:-33393138 Msa1101970:CDS
AGGCAGAGTGTTTGGTGCAG+AGG 0.564913 7_3:-33392001 Msa1101970:CDS
GAATGATCTTGATCTTGACT+TGG 0.565052 7_3:+33393709 None:intergenic
GCACTAAAGGCAGGTATGAA+GGG 0.565237 7_3:+33392339 None:intergenic
AAGCAGAAAATGGGGAACCC+TGG 0.568423 7_3:-33393034 Msa1101970:CDS
TCCTCACACGGTAGCGCCGG+AGG 0.569283 7_3:-33393850 Msa1101970:CDS
TCTTCCTCACACGGTAGCGC+CGG 0.570460 7_3:-33393853 Msa1101970:CDS
GAGAATCTGAAGCAATATGC+TGG 0.570600 7_3:-33392491 Msa1101970:CDS
AATCTCAGCAGCAGTAGCAG+TGG 0.572943 7_3:+33393480 None:intergenic
GGTAATCCGGAACACGCGCA+CGG 0.575492 7_3:-33392923 Msa1101970:CDS
GTCCTCTGCTGCAGATGGTG+AGG 0.576808 7_3:+33393067 None:intergenic
GAGGCTGAAGCTGAATCTCT+CGG 0.577024 7_3:+33393224 None:intergenic
CATCCACAGCAGAGAACGCA+AGG 0.578215 7_3:-33394609 Msa1101970:five_prime_UTR
AAAACCTACTCTTGTCATCA+GGG 0.582681 7_3:-33392061 Msa1101970:CDS
GGTATTGTTATCCTTTGCGC+CGG 0.583054 7_3:+33393804 None:intergenic
GCATTGCTTGAAGCTGTGGA+AGG 0.584725 7_3:-33392677 Msa1101970:CDS
CGATAGCACCACCGGCGCAA+AGG 0.585841 7_3:-33393815 Msa1101970:CDS
TAGCATTGAATCATAAGTCA+AGG 0.587103 7_3:+33391802 None:intergenic
CGAATCGAAGCACTAAAGGC+AGG 0.590451 7_3:+33392330 None:intergenic
GTAATCCGGAACACGCGCAC+GGG 0.591224 7_3:-33392922 Msa1101970:CDS
GCAAAGGAAGGATCTCATCT+CGG 0.596929 7_3:-33391922 Msa1101970:CDS
AGTATTTCTCGATCATCTGA+AGG 0.598913 7_3:+33392153 None:intergenic
GCTTCTACCGATAGCACCAC+CGG 0.599672 7_3:-33393823 Msa1101970:CDS
GGATAGGAGTTGTGATCGAA+CGG 0.600755 7_3:-33392273 Msa1101970:CDS
ATGTATTCTTCAAAGGGTAA+GGG 0.603369 7_3:+33394072 None:intergenic
CCATCTGCAGCAGAGGACAA+TGG 0.604634 7_3:-33393062 Msa1101970:CDS
TTATGCAGGAGTTAGCACTA+AGG 0.606201 7_3:-33392595 Msa1101970:CDS
TGAAGGTAAAAGATGTGGAA+TGG 0.609884 7_3:-33393761 Msa1101970:CDS
AGTTCTGCTTCTTCTCCACA+TGG 0.609894 7_3:+33391961 None:intergenic
AAAATGGGGAACCCTGGAAG+CGG 0.610138 7_3:-33393028 Msa1101970:CDS
TGCAGCTGAGAGTGTGTGAA+AGG 0.610994 7_3:+33393253 None:intergenic
CAAGCTGAAGGTAAAAGATG+TGG 0.613564 7_3:-33393766 Msa1101970:CDS
TTGCGTGCAGCATATAAAAG+TGG 0.613865 7_3:+33394634 None:intergenic
AAATTGTCGTAACATTGGAT+AGG 0.615531 7_3:-33392289 Msa1101970:CDS
ACGCGCACGGGATATTGGCG+CGG 0.617795 7_3:-33392910 Msa1101970:CDS
AGGTAAAAGATGTGGAATGG+AGG 0.623374 7_3:-33393758 Msa1101970:CDS
AGAACCCTGATGACAAGAGT+AGG 0.623547 7_3:+33392057 None:intergenic
CAGGAGTTAGCACTAAGGAA+TGG 0.623926 7_3:-33392590 Msa1101970:CDS
GTGAAGTTACTAAATGTCAA+CGG 0.630606 7_3:+33392032 None:intergenic
TCTTGACCCGAATCCAAGAA+GGG 0.632079 7_3:+33393154 None:intergenic
ATCACCAAATTTCTCCTATG+GGG 0.632427 7_3:-33392883 Msa1101970:CDS
TCAACACTGTCTTCCTCACA+CGG 0.633334 7_3:-33393862 Msa1101970:CDS
TGAAGGGAACAATCTTGCAA+AGG 0.633869 7_3:-33391876 Msa1101970:three_prime_UTR
TGGTTCATAACAAACTGATG+AGG 0.638887 7_3:+33393316 None:intergenic
TCCTGGTAGGGGATTCCATG+TGG 0.639151 7_3:-33391976 Msa1101970:CDS
AGAAACATACCACAAGCTGA+AGG 0.641675 7_3:-33393778 Msa1101970:CDS
ACTGCTTCGCAATCGCGTAG+TGG 0.643756 7_3:+33392398 None:intergenic
AATGCAGTGATCTTGAGTGC+AGG 0.644744 7_3:+33392560 None:intergenic
GAGGGAAAATTGTTGCTATG+CGG 0.647727 7_3:-33393956 Msa1101970:CDS
GAGTTAGCACTAAGGAATGG+TGG 0.649571 7_3:-33392587 Msa1101970:CDS
CCAGCTAAAAGACTCAATTG+TGG 0.675226 7_3:-33393202 Msa1101970:CDS
TGTTGGTGTTAATGTCCACC+CGG 0.676306 7_3:-33392180 Msa1101970:CDS
TGGCGCCTAAGCAGAAAATG+GGG 0.686084 7_3:-33393042 Msa1101970:CDS
GCTGCAGAACTTATAGACGC+CGG 0.689078 7_3:-33392944 Msa1101970:CDS
AACTAAGCTCGATTTCGTCG+TGG 0.700452 7_3:+33392522 None:intergenic
CCACAGCAGAGAACGCAAGG+AGG 0.710485 7_3:-33394606 Msa1101970:five_prime_UTR
TCATCTGAAGGACATCCGGG+TGG 0.719806 7_3:+33392165 None:intergenic
GTGTGAGGAAGACAGTGTTG+AGG 0.783398 7_3:+33393864 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTAATGTAACAAAATAAA+TGG + chr7_3:33391820-33391839 None:intergenic 15.0%
!!! CATATAATAGATTTTGATAT+TGG - chr7_3:33393657-33393676 Msa1101970:CDS 15.0%
!!! TATTGTTGTTCTTATGAAAA+TGG - chr7_3:33391980-33391999 Msa1101970:CDS 20.0%
!!! ATTGTTGTTCTTATGAAAAT+GGG - chr7_3:33391981-33392000 Msa1101970:CDS 20.0%
!! TTCCATATTGAAATTGATAA+TGG - chr7_3:33392609-33392628 Msa1101970:CDS 20.0%
!! TTCCATTATCAATTTCAATA+TGG + chr7_3:33392614-33392633 None:intergenic 20.0%
!!! ATTCAATGGTTTTAGTTTTA+TGG - chr7_3:33392714-33392733 Msa1101970:CDS 20.0%
!!! ATAGATTTTGATATTGGTTT+TGG - chr7_3:33393663-33393682 Msa1101970:CDS 20.0%
!! ACAACATAGTTATGAGTTTT+TGG - chr7_3:33391780-33391799 Msa1101970:three_prime_UTR 25.0%
!! AAAAACAAGATCTGAAGTTA+AGG + chr7_3:33392076-33392095 None:intergenic 25.0%
! ATCAACAACAAAGACAAAAT+GGG + chr7_3:33392145-33392164 None:intergenic 25.0%
! AATCAACAACAAAGACAAAA+TGG + chr7_3:33392146-33392165 None:intergenic 25.0%
! TTTCCTATGTATTCTTCAAA+GGG + chr7_3:33392235-33392254 None:intergenic 25.0%
!! TTTTCCTATGTATTCTTCAA+AGG + chr7_3:33392236-33392255 None:intergenic 25.0%
! TTTGAAGAATACATAGGAAA+AGG - chr7_3:33392235-33392254 Msa1101970:CDS 25.0%
! TCAAAAACAACAACAGAATT+GGG + chr7_3:33392376-33392395 None:intergenic 25.0%
!!! TTTGTTGATTTGGTTTTTTG+AGG + chr7_3:33392399-33392418 None:intergenic 25.0%
! AGTTACCATTTGAAGAAATA+GGG + chr7_3:33392762-33392781 None:intergenic 25.0%
! AAGTTACCATTTGAAGAAAT+AGG + chr7_3:33392763-33392782 None:intergenic 25.0%
!! TATAATTGATCAGCTTTTCA+AGG - chr7_3:33393332-33393351 Msa1101970:CDS 25.0%
! AAATGCCTCCTTAAAATAAA+AGG + chr7_3:33393460-33393479 None:intergenic 25.0%
! TAATTTGAGAAAGAGCAAAT+AGG + chr7_3:33393939-33393958 None:intergenic 25.0%
!! ATGCTAATTTGTCTATGTTT+AGG - chr7_3:33394513-33394532 Msa1101970:five_prime_UTR 25.0%
!!! TTTGTTATTTCCACTTATGA+TGG - chr7_3:33394537-33394556 Msa1101970:five_prime_UTR 25.0%
TGTTGTGTTTGAGTGAAAAA+AGG - chr7_3:33391885-33391904 Msa1101970:exon 30.0%
ATGAAGAAGAAGAATGAATG+AGG - chr7_3:33391926-33391945 Msa1101970:CDS 30.0%
! TGTGTGTTTATGTCTTTTGT+TGG - chr7_3:33391954-33391973 Msa1101970:CDS 30.0%
!!! TGTGTTTTTTTGTCTGAACT+AGG - chr7_3:33392039-33392058 Msa1101970:CDS 30.0%
TGTTTGAAAGAAACTTGTGT+TGG - chr7_3:33392173-33392192 Msa1101970:CDS 30.0%
!! GTTGTTGTTGATTTAGATGA+AGG - chr7_3:33392198-33392217 Msa1101970:CDS 30.0%
ATGTATTCTTCAAAGGGTAA+GGG + chr7_3:33392229-33392248 None:intergenic 30.0%
TATGTATTCTTCAAAGGGTA+AGG + chr7_3:33392230-33392249 None:intergenic 30.0%
! TTACCCTTTGAAGAATACAT+AGG - chr7_3:33392229-33392248 Msa1101970:CDS 30.0%
GTCAAAAACAACAACAGAAT+TGG + chr7_3:33392377-33392396 None:intergenic 30.0%
AGATATTGAAGATGCATCTA+TGG - chr7_3:33392633-33392652 Msa1101970:CDS 30.0%
GATATTGAAGATGCATCTAT+GGG - chr7_3:33392634-33392653 Msa1101970:CDS 30.0%
! TTAAGCAAGCTTTTACAAGT+TGG - chr7_3:33392658-33392677 Msa1101970:CDS 30.0%
CAACAAGATGTTGAATTCAA+TGG - chr7_3:33392700-33392719 Msa1101970:CDS 30.0%
! ATTTGTTCTGATTTCCCTTT+TGG - chr7_3:33392838-33392857 Msa1101970:CDS 30.0%
CTTGTGAAGAACTGAAATTA+GGG + chr7_3:33392891-33392910 None:intergenic 30.0%
ACTTGTGAAGAACTGAAATT+AGG + chr7_3:33392892-33392911 None:intergenic 30.0%
AGCATCAACAACAATCAATT+GGG - chr7_3:33392941-33392960 Msa1101970:CDS 30.0%
TGAAAGGAAAAACCAAACTA+GGG + chr7_3:33393032-33393051 None:intergenic 30.0%
AATCACCAAATTTCTCCTAT+GGG - chr7_3:33393414-33393433 Msa1101970:CDS 30.0%
!!! GATTTTGATATTGGTTTTGG+TGG - chr7_3:33393666-33393685 Msa1101970:CDS 30.0%
! TCCAATGTTACGACAATTTT+AGG + chr7_3:33394008-33394027 None:intergenic 30.0%
AAATTGTCGTAACATTGGAT+AGG - chr7_3:33394009-33394028 Msa1101970:CDS 30.0%
GTGAAGTTACTAAATGTCAA+CGG + chr7_3:33394269-33394288 None:intergenic 30.0%
! TAGCATTGAATCATAAGTCA+AGG + chr7_3:33394499-33394518 None:intergenic 30.0%
ATGTTTACTTCCATCATAAG+TGG + chr7_3:33394550-33394569 None:intergenic 30.0%
TGTCTTAATTAGCAACTGAA+TGG - chr7_3:33394581-33394600 Msa1101970:five_prime_UTR 30.0%
!! GGAAAAGGTGTGTTAGATTT+TGG - chr7_3:33392250-33392269 Msa1101970:CDS 35.0%
! TGTTTTCTCAACAGCAAGAA+CGG - chr7_3:33392305-33392324 Msa1101970:CDS 35.0%
TGAAGGTAAAAGATGTGGAA+TGG - chr7_3:33392537-33392556 Msa1101970:CDS 35.0%
GAATGATCTTGATCTTGACT+TGG + chr7_3:33392592-33392611 None:intergenic 35.0%
! CTTGACCCTATTTCTTCAAA+TGG - chr7_3:33392754-33392773 Msa1101970:CDS 35.0%
!! ATTTCCCTTTTGGTAGTAGA+GGG - chr7_3:33392848-33392867 Msa1101970:CDS 35.0%
TCACAAGTTTCACTTTCTCA+TGG - chr7_3:33392904-33392923 Msa1101970:CDS 35.0%
CAGCATCAACAACAATCAAT+TGG - chr7_3:33392940-33392959 Msa1101970:CDS 35.0%
TGGTTCATAACAAACTGATG+AGG + chr7_3:33392985-33393004 None:intergenic 35.0%
! GTATAAACTGAGCTTGGTTT+TGG + chr7_3:33393005-33393024 None:intergenic 35.0%
GTTTATACCTAACCCTAGTT+TGG - chr7_3:33393017-33393036 Msa1101970:CDS 35.0%
GTGAAAGGAAAAACCAAACT+AGG + chr7_3:33393033-33393052 None:intergenic 35.0%
CAATCACCAAATTTCTCCTA+TGG - chr7_3:33393413-33393432 Msa1101970:CDS 35.0%
ATCACCAAATTTCTCCTATG+GGG - chr7_3:33393415-33393434 Msa1101970:CDS 35.0%
!!! AAGGGCTGCCTTTTATTTTA+AGG - chr7_3:33393449-33393468 Msa1101970:CDS 35.0%
AAATTTGCAAACTGCAGAAC+AGG + chr7_3:33393588-33393607 None:intergenic 35.0%
!!! ATATTGGTTTTGGTGGACAA+TGG - chr7_3:33393673-33393692 Msa1101970:CDS 35.0%
ACAATGGTCTTCATTTATGC+AGG - chr7_3:33393689-33393708 Msa1101970:CDS 35.0%
GCCTAAAATTGTCGTAACAT+TGG - chr7_3:33394004-33394023 Msa1101970:CDS 35.0%
AAAATCATGTGCTGAGGAAA+CGG + chr7_3:33394056-33394075 None:intergenic 35.0%
ATCAAGTGATTCAAGCAAAC+TGG + chr7_3:33394096-33394115 None:intergenic 35.0%
AGTATTTCTCGATCATCTGA+AGG + chr7_3:33394148-33394167 None:intergenic 35.0%
CGAGAAATACTATCTTCAAC+CGG - chr7_3:33394157-33394176 Msa1101970:intron 35.0%
AAAAACCTACTCTTGTCATC+AGG - chr7_3:33394236-33394255 Msa1101970:intron 35.0%
AAAACCTACTCTTGTCATCA+GGG - chr7_3:33394237-33394256 Msa1101970:intron 35.0%
TTGCGTGCAGCATATAAAAG+TGG + chr7_3:33391667-33391686 None:intergenic 40.0%
! AGCAAGAACGGTTTTTGCAA+AGG - chr7_3:33392317-33392336 Msa1101970:CDS 40.0%
! AAGAACGGTTTTTGCAAAGG+TGG - chr7_3:33392320-33392339 Msa1101970:CDS 40.0%
GAGGGAAAATTGTTGCTATG+CGG - chr7_3:33392342-33392361 Msa1101970:CDS 40.0%
AGGGAAAATTGTTGCTATGC+GGG - chr7_3:33392343-33392362 Msa1101970:CDS 40.0%
!! GTAGGAGTGGTTTGTTGATT+TGG + chr7_3:33392409-33392428 None:intergenic 40.0%
! AGCTTGTGGTATGTTTCTGT+TGG + chr7_3:33392518-33392537 None:intergenic 40.0%
AGAAACATACCACAAGCTGA+AGG - chr7_3:33392520-33392539 Msa1101970:CDS 40.0%
! CATCTTTTACCTTCAGCTTG+TGG + chr7_3:33392532-33392551 None:intergenic 40.0%
CAAGCTGAAGGTAAAAGATG+TGG - chr7_3:33392532-33392551 Msa1101970:CDS 40.0%
AGGTAAAAGATGTGGAATGG+AGG - chr7_3:33392540-33392559 Msa1101970:CDS 40.0%
AAAGATGTGGAATGGAGGAT+TGG - chr7_3:33392545-33392564 Msa1101970:CDS 40.0%
AAGATGTGGAATGGAGGATT+GGG - chr7_3:33392546-33392565 Msa1101970:CDS 40.0%
!! GATTTCCCTTTTGGTAGTAG+AGG - chr7_3:33392847-33392866 Msa1101970:CDS 40.0%
TCATCCCTCTACTACCAAAA+GGG + chr7_3:33392855-33392874 None:intergenic 40.0%
TTCATCCCTCTACTACCAAA+AGG + chr7_3:33392856-33392875 None:intergenic 40.0%
CAAGTTTCACTTTCTCATGG+TGG - chr7_3:33392907-33392926 Msa1101970:CDS 40.0%
GGTTAGGTATAAACTGAGCT+TGG + chr7_3:33393011-33393030 None:intergenic 40.0%
GGAAAAACCAAACTAGGGTT+AGG + chr7_3:33393027-33393046 None:intergenic 40.0%
!! CAATTGAGTCTTTTAGCTGG+AGG + chr7_3:33393096-33393115 None:intergenic 40.0%
! CCACAATTGAGTCTTTTAGC+TGG + chr7_3:33393099-33393118 None:intergenic 40.0%
CCAGCTAAAAGACTCAATTG+TGG - chr7_3:33393096-33393115 Msa1101970:CDS 40.0%
AATTCCGAAGATACCCTTCT+TGG - chr7_3:33393131-33393150 Msa1101970:CDS 40.0%
!! GAATCCAAGAAGGGTATCTT+CGG + chr7_3:33393138-33393157 None:intergenic 40.0%
GAAGATACCCTTCTTGGATT+CGG - chr7_3:33393137-33393156 Msa1101970:CDS 40.0%
AAGATACCCTTCTTGGATTC+GGG - chr7_3:33393138-33393157 Msa1101970:CDS 40.0%
GTCAAGAGATGTTTCTTAGG+AGG - chr7_3:33393160-33393179 Msa1101970:CDS 40.0%
! TATGGGGAAGCCTTTTCAAA+GGG - chr7_3:33393431-33393450 Msa1101970:CDS 40.0%
! TAAAAGGCAGCCCTTTGAAA+AGG + chr7_3:33393444-33393463 None:intergenic 40.0%
!!! GGCTGCCTTTTATTTTAAGG+AGG - chr7_3:33393452-33393471 Msa1101970:CDS 40.0%
TTATGCAGGAGTTAGCACTA+AGG - chr7_3:33393703-33393722 Msa1101970:CDS 40.0%
! GAGAATCTGAAGCAATATGC+TGG - chr7_3:33393807-33393826 Msa1101970:CDS 40.0%
AGTCTCTGAATTCTGTTTCG+TGG - chr7_3:33393871-33393890 Msa1101970:CDS 40.0%
! TTCACGAATCGAAGCACTAA+AGG + chr7_3:33393975-33393994 None:intergenic 40.0%
AGTGCAAAAATCATGTGCTG+AGG + chr7_3:33394062-33394081 None:intergenic 40.0%
CAAGCAAACTGGAATAAGAC+TGG + chr7_3:33394085-33394104 None:intergenic 40.0%
CTTGAATCACTTGATGCTGT+TGG - chr7_3:33394101-33394120 Msa1101970:intron 40.0%
AAAACAAGCTTCTCAACTGC+CGG + chr7_3:33394179-33394198 None:intergenic 40.0%
!! GCAGTTGAGAAGCTTGTTTT+GGG - chr7_3:33394179-33394198 Msa1101970:intron 40.0%
! GACAAGAGTAGGTTTTTCCA+GGG + chr7_3:33394233-33394252 None:intergenic 40.0%
! TGACAAGAGTAGGTTTTTCC+AGG + chr7_3:33394234-33394253 None:intergenic 40.0%
AGAACTCACTTGTCTTGTGT+TGG - chr7_3:33394354-33394373 Msa1101970:intron 40.0%
ATCTCATCTCGGTTTCAACT+TGG - chr7_3:33394387-33394406 Msa1101970:five_prime_UTR 40.0%
TGAAGGGAACAATCTTGCAA+AGG - chr7_3:33394422-33394441 Msa1101970:five_prime_UTR 40.0%
! AACGGTTTTTGCAAAGGTGG+AGG - chr7_3:33392323-33392342 Msa1101970:CDS 45.0%
! ACGGTTTTTGCAAAGGTGGA+GGG - chr7_3:33392324-33392343 Msa1101970:CDS 45.0%
TGTTGAGGATGAAGTAGGAG+TGG + chr7_3:33392422-33392441 None:intergenic 45.0%
! GACAGTGTTGAGGATGAAGT+AGG + chr7_3:33392427-33392446 None:intergenic 45.0%
TCAACACTGTCTTCCTCACA+CGG - chr7_3:33392436-33392455 Msa1101970:CDS 45.0%
GGTATTGTTATCCTTTGCGC+CGG + chr7_3:33392497-33392516 None:intergenic 45.0%
TCTTGACCCGAATCCAAGAA+GGG + chr7_3:33393147-33393166 None:intergenic 45.0%
CGGGTCAAGAGATGTTTCTT+AGG - chr7_3:33393157-33393176 Msa1101970:CDS 45.0%
AATGGCGCCTAAGCAGAAAA+TGG - chr7_3:33393254-33393273 Msa1101970:CDS 45.0%
ATGGCGCCTAAGCAGAAAAT+GGG - chr7_3:33393255-33393274 Msa1101970:CDS 45.0%
ACTTATAGACGCCGGTAATC+CGG - chr7_3:33393362-33393381 Msa1101970:CDS 45.0%
GCTTCCCCATAGGAGAAATT+TGG + chr7_3:33393422-33393441 None:intergenic 45.0%
! CTTTGAAAAGGCTTCCCCAT+AGG + chr7_3:33393432-33393451 None:intergenic 45.0%
! CTATGGGGAAGCCTTTTCAA+AGG - chr7_3:33393430-33393449 Msa1101970:CDS 45.0%
ATCTTGAGCAAGAGGCTAGT+TGG + chr7_3:33393534-33393553 None:intergenic 45.0%
! ACTAGCCTCTTGCTCAAGAT+TGG - chr7_3:33393534-33393553 Msa1101970:CDS 45.0%
AAGCACCAATCTTGAGCAAG+AGG + chr7_3:33393542-33393561 None:intergenic 45.0%
AGCTTCAAGCAATGCTTGGT+TGG + chr7_3:33393616-33393635 None:intergenic 45.0%
CAGGAGTTAGCACTAAGGAA+TGG - chr7_3:33393708-33393727 Msa1101970:CDS 45.0%
GAGTTAGCACTAAGGAATGG+TGG - chr7_3:33393711-33393730 Msa1101970:CDS 45.0%
AATGCAGTGATCTTGAGTGC+AGG + chr7_3:33393741-33393760 None:intergenic 45.0%
AACTAAGCTCGATTTCGTCG+TGG + chr7_3:33393779-33393798 None:intergenic 45.0%
GCACTAAAGGCAGGTATGAA+GGG + chr7_3:33393962-33393981 None:intergenic 45.0%
AGCACTAAAGGCAGGTATGA+AGG + chr7_3:33393963-33393982 None:intergenic 45.0%
GGATAGGAGTTGTGATCGAA+CGG - chr7_3:33394025-33394044 Msa1101970:CDS 45.0%
!! TGTTGGTGTTAATGTCCACC+CGG - chr7_3:33394118-33394137 Msa1101970:intron 45.0%
TCGATCATCTGAAGGACATC+CGG + chr7_3:33394140-33394159 None:intergenic 45.0%
!! GGCAGTTGAGAAGCTTGTTT+TGG - chr7_3:33394178-33394197 Msa1101970:intron 45.0%
AGAACCCTGATGACAAGAGT+AGG + chr7_3:33394244-33394263 None:intergenic 45.0%
TAGTAACTTCACAGAGTCGC+AGG - chr7_3:33394277-33394296 Msa1101970:intron 45.0%
AGTTCTGCTTCTTCTCCACA+TGG + chr7_3:33394340-33394359 None:intergenic 45.0%
! CACTTGTCTTGTGTTGGCAA+AGG - chr7_3:33394360-33394379 Msa1101970:intron 45.0%
! TGTCTTGTGTTGGCAAAGGA+AGG - chr7_3:33394364-33394383 Msa1101970:intron 45.0%
GCAAAGGAAGGATCTCATCT+CGG - chr7_3:33394376-33394395 Msa1101970:exon 45.0%
TTGGAGATGCTGAGAGTGAA+GGG - chr7_3:33394406-33394425 Msa1101970:five_prime_UTR 45.0%
GTGTGAGGAAGACAGTGTTG+AGG + chr7_3:33392437-33392456 None:intergenic 50.0%
ATTGTTATCCTTTGCGCCGG+TGG + chr7_3:33392494-33392513 None:intergenic 50.0%
AATCTCAGCAGCAGTAGCAG+TGG + chr7_3:33392821-33392840 None:intergenic 50.0%
! TGCAGCTGAGAGTGTGTGAA+AGG + chr7_3:33393048-33393067 None:intergenic 50.0%
GAGGCTGAAGCTGAATCTCT+CGG + chr7_3:33393077-33393096 None:intergenic 50.0%
CTCTTGACCCGAATCCAAGA+AGG + chr7_3:33393148-33393167 None:intergenic 50.0%
TGGCGCCTAAGCAGAAAATG+GGG - chr7_3:33393256-33393275 Msa1101970:CDS 50.0%
! GGGTTCCCCATTTTCTGCTT+AGG + chr7_3:33393264-33393283 None:intergenic 50.0%
AAGCAGAAAATGGGGAACCC+TGG - chr7_3:33393264-33393283 Msa1101970:CDS 50.0%
AAAATGGGGAACCCTGGAAG+CGG - chr7_3:33393270-33393289 Msa1101970:CDS 50.0%
! ATCGGCTCATCAGTTTCAGC+AGG - chr7_3:33393308-33393327 Msa1101970:CDS 50.0%
GCTGCAGAACTTATAGACGC+CGG - chr7_3:33393354-33393373 Msa1101970:CDS 50.0%
CCACAGCTTCAAGCAATGCT+TGG + chr7_3:33393620-33393639 None:intergenic 50.0%
! CCAAGCATTGCTTGAAGCTG+TGG - chr7_3:33393617-33393636 Msa1101970:CDS 50.0%
GCATTGCTTGAAGCTGTGGA+AGG - chr7_3:33393621-33393640 Msa1101970:CDS 50.0%
TCGATTTCGTCGTGGTGTGA+GGG + chr7_3:33393771-33393790 None:intergenic 50.0%
! CGAATCGAAGCACTAAAGGC+AGG + chr7_3:33393971-33393990 None:intergenic 50.0%
CGATCATCTGAAGGACATCC+GGG + chr7_3:33394139-33394158 None:intergenic 50.0%
TTCTATCCTGCGAGCGCAAA+CGG + chr7_3:33394205-33394224 None:intergenic 50.0%
!! TGTTTGGTGCAGAGGATTCC+TGG - chr7_3:33394305-33394324 Msa1101970:intron 50.0%
CTTGGAGATGCTGAGAGTGA+AGG - chr7_3:33394405-33394424 Msa1101970:five_prime_UTR 50.0%
CTTGCGTTCTCTGCTGTGGA+TGG + chr7_3:33391691-33391710 None:intergenic 55.0%
CATCCACAGCAGAGAACGCA+AGG - chr7_3:33391689-33391708 Msa1101970:three_prime_UTR 55.0%
GCTTCTACCGATAGCACCAC+CGG - chr7_3:33392475-33392494 Msa1101970:CDS 55.0%
TTCCTCACCATCTGCAGCAG+AGG - chr7_3:33393229-33393248 Msa1101970:CDS 55.0%
CCATTGTCCTCTGCTGCAGA+TGG + chr7_3:33393239-33393258 None:intergenic 55.0%
CCATCTGCAGCAGAGGACAA+TGG - chr7_3:33393236-33393255 Msa1101970:CDS 55.0%
AATATCCCGTGCGCGTGTTC+CGG + chr7_3:33393384-33393403 None:intergenic 55.0%
CTCGATTTCGTCGTGGTGTG+AGG + chr7_3:33393772-33393791 None:intergenic 55.0%
ACTGCTTCGCAATCGCGTAG+TGG + chr7_3:33393903-33393922 None:intergenic 55.0%
ACGCGATTGCGAAGCAGTTG+TGG - chr7_3:33393905-33393924 Msa1101970:CDS 55.0%
TCATCTGAAGGACATCCGGG+TGG + chr7_3:33394136-33394155 None:intergenic 55.0%
CGCAGGATAGAACACTTCCC+TGG - chr7_3:33394213-33394232 Msa1101970:intron 55.0%
! AGAGTCGCAGGCAGAGTGTT+TGG - chr7_3:33394289-33394308 Msa1101970:intron 55.0%
!! AGGCAGAGTGTTTGGTGCAG+AGG - chr7_3:33394297-33394316 Msa1101970:intron 55.0%
TGGTGCAGAGGATTCCTGGT+AGG - chr7_3:33394309-33394328 Msa1101970:intron 55.0%
GGTGCAGAGGATTCCTGGTA+GGG - chr7_3:33394310-33394329 Msa1101970:intron 55.0%
GTGCAGAGGATTCCTGGTAG+GGG - chr7_3:33394311-33394330 Msa1101970:intron 55.0%
TCCTGGTAGGGGATTCCATG+TGG - chr7_3:33394322-33394341 Msa1101970:intron 55.0%
TCCACATGGAATCCCCTACC+AGG + chr7_3:33394326-33394345 None:intergenic 55.0%
CCTCCTTGCGTTCTCTGCTG+TGG + chr7_3:33391695-33391714 None:intergenic 60.0%
CCACAGCAGAGAACGCAAGG+AGG - chr7_3:33391692-33391711 Msa1101970:three_prime_UTR 60.0%
TCTTCCTCACACGGTAGCGC+CGG - chr7_3:33392445-33392464 Msa1101970:CDS 60.0%
!! CTTTGCGCCGGTGGTGCTAT+CGG + chr7_3:33392485-33392504 None:intergenic 60.0%
GTCCTCTGCTGCAGATGGTG+AGG + chr7_3:33393234-33393253 None:intergenic 60.0%
! CGGTGGCGGCGAAGATGTAT+CGG - chr7_3:33393290-33393309 Msa1101970:CDS 60.0%
GTGCGCGTGTTCCGGATTAC+CGG + chr7_3:33393376-33393395 None:intergenic 60.0%
GGTAATCCGGAACACGCGCA+CGG - chr7_3:33393375-33393394 Msa1101970:CDS 60.0%
GTAATCCGGAACACGCGCAC+GGG - chr7_3:33393376-33393395 Msa1101970:CDS 60.0%
GGAACACGCGCACGGGATAT+TGG - chr7_3:33393383-33393402 Msa1101970:CDS 60.0%
TCGCAATCGCGTAGTGGCTG+CGG + chr7_3:33393897-33393916 None:intergenic 60.0%
!! ATCGGTAGAAGCGCCGCCTC+CGG + chr7_3:33392467-33392486 None:intergenic 65.0%
CGATAGCACCACCGGCGCAA+AGG - chr7_3:33392483-33392502 Msa1101970:CDS 65.0%
ATGGGGAACCCTGGAAGCGG+TGG - chr7_3:33393273-33393292 Msa1101970:CDS 65.0%
ACGCGCACGGGATATTGGCG+CGG - chr7_3:33393388-33393407 Msa1101970:CDS 65.0%
TTTGGGCCGTTTGCGCTCGC+AGG - chr7_3:33394196-33394215 Msa1101970:intron 65.0%
! TCCTCACACGGTAGCGCCGG+AGG - chr7_3:33392448-33392467 Msa1101970:CDS 70.0%
! TCACACGGTAGCGCCGGAGG+CGG - chr7_3:33392451-33392470 Msa1101970:CDS 70.0%
GGGAACCCTGGAAGCGGTGG+CGG - chr7_3:33393276-33393295 Msa1101970:CDS 70.0%
CTTCGCCGCCACCGCTTCCA+GGG + chr7_3:33393284-33393303 None:intergenic 70.0%
TCTTCGCCGCCACCGCTTCC+AGG + chr7_3:33393285-33393304 None:intergenic 70.0%
GCCTCCGGCGCTACCGTGTG+AGG + chr7_3:33392452-33392471 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 33391624 33394696 33391624 ID=Msa1101970;Name=Msa1101970
chr7_3 mRNA 33391624 33394696 33391624 ID=Msa1101970-mRNA-1;Parent=Msa1101970;Name=Msa1101970-mRNA-1;_AED=0.20;_eAED=0.20;_QI=315|1|1|1|0|0.5|2|278|737
chr7_3 exon 33391624 33394106 33391624 ID=Msa1101970-mRNA-1:exon:7204;Parent=Msa1101970-mRNA-1
chr7_3 exon 33394373 33394696 33394373 ID=Msa1101970-mRNA-1:exon:7203;Parent=Msa1101970-mRNA-1
chr7_3 five_prime_UTR 33394382 33394696 33394382 ID=Msa1101970-mRNA-1:five_prime_utr;Parent=Msa1101970-mRNA-1
chr7_3 CDS 33394373 33394381 33394373 ID=Msa1101970-mRNA-1:cds;Parent=Msa1101970-mRNA-1
chr7_3 CDS 33391902 33394106 33391902 ID=Msa1101970-mRNA-1:cds;Parent=Msa1101970-mRNA-1
chr7_3 three_prime_UTR 33391624 33391901 33391624 ID=Msa1101970-mRNA-1:three_prime_utr;Parent=Msa1101970-mRNA-1
Gene Sequence

>Msa1101970

ATGAATGAGATGAAGGCTATGCCCTTACCCTTTGAAGAATACATAGGAAAAGGTGTGTTAGATTTTGGTTCAAGTGTTGTTGCTTCTTCAGATTCATATTTGTTTTCTCAACAGCAAGAACGGTTTTTGCAAAGGTGGAGGGAAAATTGTTGCTATGCGGGCATTGAGCCCAATTCTGTTGTTGTTTTTGACCTCAAAAAACCAAATCAACAAACCACTCCTACTTCATCCTCAACACTGTCTTCCTCACACGGTAGCGCCGGAGGCGGCGCTTCTACCGATAGCACCACCGGCGCAAAGGATAACAATACCAACAGAAACATACCACAAGCTGAAGGTAAAAGATGTGGAATGGAGGATTGGGAGAGTGTGTTATCTGAATCACCAAGTCAAGATCAAGATCATTCCATATTGAAATTGATAATGGAAGATATTGAAGATGCATCTATGGGATTAAGCAAGCTTTTACAAGTTGGAACTAGTAATTCTCATTCTCAACAAGATGTTGAATTCAATGGTTTTAGTTTTATGGATCAACAAAGTTCTGTACTTGACCCTATTTCTTCAAATGGTAACTTTGTAACTAGCATTGATTCTTCTTCTGTTGTTGCTACCACTGCTACTGCTGCTGAGATTTGTTCTGATTTCCCTTTTGGTAGTAGAGGGATGAATCAAATTCAAAACCCTAATTTCAGTTCTTCACAAGTTTCACTTTCTCATGGTGGTTTGTTTCATCAGCATCAACAACAATCAATTGGGTCTCTTGATGAGAAGCTACCTCATCAGTTTGTTATGAACCAAAACCAAGCTCAGTTTATACCTAACCCTAGTTTGGTTTTTCCTTTCACACACTCTCAGCTGCAAGAAAACCGAGAGATTCAGCTTCAGCCTCCAGCTAAAAGACTCAATTGTGGAACAAATTATGAAATTCCGAAGATACCCTTCTTGGATTCGGGTCAAGAGATGTTTCTTAGGAGGCAACAACAGCATCAGCAACAGCAACATCAGCAGCAGCTTCAACTGCTTCCTCACCATCTGCAGCAGAGGACAATGGCGCCTAAGCAGAAAATGGGGAACCCTGGAAGCGGTGGCGGCGAAGATGTATCGGCTCATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTCAAGGCTGCAGAACTTATAGACGCCGGTAATCCGGAACACGCGCACGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATGGGGAAGCCTTTTCAAAGGGCTGCCTTTTATTTTAAGGAGGCATTTCAATTGCTTCTTCAATCAAATGTCAACAACAGCAACAACAACAGCTTTTCACCAACTAGCCTCTTGCTCAAGATTGGTGCTTATAAATCATTCTCAGAAATCTCACCTGTTCTGCAGTTTGCAAATTTCACTTCCAACCAAGCATTGCTTGAAGCTGTGGAAGGTTTCGATCGAATTCATATAATAGATTTTGATATTGGTTTTGGTGGACAATGGTCTTCATTTATGCAGGAGTTAGCACTAAGGAATGGTGGTGCACCTGCACTCAAGATCACTGCATTTGTTTCGCCCTCACACCACGACGAAATCGAGCTTAGTTTCACTAACGAGAATCTGAAGCAATATGCTGGTGAAATTAACATGTCATTTGAGCTCGAAATTCTGACACTTGAGTCTCTGAATTCTGTTTCGTGGCCGCAGCCACTACGCGATTGCGAAGCAGTTGTGGTTAACTTGCCTATTTGCTCTTTCTCAAATTACCCTTCATACCTGCCTTTAGTGCTTCGATTCGTGAAGCAGCTAATGCCTAAAATTGTCGTAACATTGGATAGGAGTTGTGATCGAACGGATGCACCGTTTCCTCAGCACATGATTTTTGCACTCCAGTCTTATTCCAGTTTGCTTGAATCACTTGATGCTGTTGGTGTTAATGTCCACCCGGATGTCCTTCAGATGATCGAGAAATACTATCTTCAACCGGCAGTTGAGAAGCTTGTTTTGGGCCGTTTGCGCTCGCAGGATAGAACACTTCCCTGGAAAAACCTACTCTTGTCATCAGGGTTCTCGCCGTTGACATTTAGTAACTTCACAGAGTCGCAGGCAGAGTGTTTGGTGCAGAGGATTCCTGGTAGGGGATTCCATGTGGAGAAGAAGCAGAACTCACTTGTCTTGTGTTGGCAAAGGAAGGATCTCATCTCGGTTTCAACTTGGAGATGCTGA
Protein sequence

>Msa1101970

MNEMKAMPLPFEEYIGKGVLDFGSSVVASSDSYLFSQQQERFLQRWRENCCYAGIEPNSVVVFDLKKPNQQTTPTSSSTLSSSHGSAGGGASTDSTTGAKDNNTNRNIPQAEGKRCGMEDWESVLSESPSQDQDHSILKLIMEDIEDASMGLSKLLQVGTSNSHSQQDVEFNGFSFMDQQSSVLDPISSNGNFVTSIDSSSVVATTATAAEICSDFPFGSRGMNQIQNPNFSSSQVSLSHGGLFHQHQQQSIGSLDEKLPHQFVMNQNQAQFIPNPSLVFPFTHSQLQENREIQLQPPAKRLNCGTNYEIPKIPFLDSGQEMFLRRQQQHQQQQHQQQLQLLPHHLQQRTMAPKQKMGNPGSGGGEDVSAHQFQQAIIDQLFKAAELIDAGNPEHAHGILARLNHQISPMGKPFQRAAFYFKEAFQLLLQSNVNNSNNNSFSPTSLLLKIGAYKSFSEISPVLQFANFTSNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPSHHDEIELSFTNENLKQYAGEINMSFELEILTLESLNSVSWPQPLRDCEAVVVNLPICSFSNYPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHMIFALQSYSSLLESLDAVGVNVHPDVLQMIEKYYLQPAVEKLVLGRLRSQDRTLPWKNLLLSSGFSPLTFSNFTESQAECLVQRIPGRGFHVEKKQNSLVLCWQRKDLISVSTWRC*