Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103280 | XP_024625444.1 | 94.539 | 293 | 16 | 0 | 6 | 298 | 1 | 293 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103280 | A0A396GWS4 | 94.539 | 293 | 16 | 0 | 6 | 298 | 1 | 293 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1017160 | Msa1103280 | 0.845371 | 4.233891e-59 | -8.615850e-47 |
| Msa0484160 | Msa1103280 | 0.806892 | 6.597792e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103280 | MtrunA17_Chr7g0232961 | 94.539 | 293 | 16 | 0 | 6 | 298 | 1 | 293 | 0.0 | 580 |
| Msa1103280 | MtrunA17_Chr7g0232491 | 61.798 | 267 | 100 | 1 | 34 | 298 | 1 | 267 | 1.62e-123 | 354 |
| Msa1103280 | MtrunA17_Chr8g0334871 | 61.719 | 256 | 98 | 0 | 40 | 295 | 15 | 270 | 4.44e-119 | 343 |
| Msa1103280 | MtrunA17_Chr5g0405131 | 62.712 | 59 | 22 | 0 | 147 | 205 | 8 | 66 | 4.74e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103280 | AT3G60450.1 | 57.085 | 247 | 105 | 1 | 50 | 295 | 12 | 258 | 2.00e-104 | 306 |
| Msa1103280 | AT3G60450.2 | 57.085 | 247 | 105 | 1 | 50 | 295 | 44 | 290 | 2.09e-104 | 307 |
| Msa1103280 | AT3G60440.1 | 53.282 | 259 | 119 | 2 | 40 | 297 | 25 | 282 | 6.02e-96 | 285 |
| Msa1103280 | AT3G60415.1 | 55.144 | 243 | 105 | 2 | 50 | 291 | 11 | 250 | 6.52e-92 | 274 |
| Msa1103280 | AT3G60420.1 | 50.602 | 249 | 112 | 4 | 50 | 298 | 33 | 270 | 1.25e-84 | 255 |
| Msa1103280 | AT3G60440.2 | 55.924 | 211 | 92 | 1 | 40 | 249 | 25 | 235 | 3.78e-81 | 246 |
Find 86 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATATTCTGGTACATAAT+TGG | 0.153715 | 7_3:-38851485 | None:intergenic |
| GAAAGAGATCACTCCCTTAT+TGG | 0.240145 | 7_3:+38853350 | Msa1103280:CDS |
| CATTAAAATTTCCACCAATA+AGG | 0.241584 | 7_3:-38853364 | None:intergenic |
| AAACTCAAATTTCCATCTTT+AGG | 0.246362 | 7_3:-38852081 | None:intergenic |
| AAAAGATTATAAACTTGATA+TGG | 0.261418 | 7_3:-38853466 | None:intergenic |
| TTTAAGAGAAAACCAAAGTT+TGG | 0.283514 | 7_3:+38851451 | Msa1103280:CDS |
| TTGCAGGTCTCTCTTGAGTA+TGG | 0.302762 | 7_3:+38852012 | Msa1103280:intron |
| TCTTGTCAAACAATCGATTC+AGG | 0.307574 | 7_3:-38853631 | None:intergenic |
| GCCTCATCACAATGATATTC+TGG | 0.327563 | 7_3:-38851496 | None:intergenic |
| ATTAAAATTTCCACCAATAA+GGG | 0.328983 | 7_3:-38853363 | None:intergenic |
| GAGTGATCTCTTTCGAAAAT+AGG | 0.329886 | 7_3:-38853341 | None:intergenic |
| CAAGAAATGAAAGAGTTAAA+AGG | 0.337294 | 7_3:+38853649 | Msa1103280:three_prime_UTR |
| CAGGTTCGAGCATTTCAAAT+AGG | 0.341397 | 7_3:+38851602 | Msa1103280:CDS |
| CAACCACGGCTGCGCGGCCG+TGG | 0.342569 | 7_3:+38851555 | Msa1103280:CDS |
| TTTGAGTTTAATTCTCTTCA+AGG | 0.345813 | 7_3:-38853704 | None:intergenic |
| AACTAAATTAGATTGGAATA+TGG | 0.365280 | 7_3:+38853501 | Msa1103280:three_prime_UTR |
| AGGTTCGAGCATTTCAAATA+GGG | 0.378872 | 7_3:+38851603 | Msa1103280:CDS |
| ATTGTGTAACTAAATTAGAT+TGG | 0.382676 | 7_3:+38853494 | Msa1103280:three_prime_UTR |
| TGCTCGAACCTGGCCCGGTT+GGG | 0.386842 | 7_3:-38851591 | None:intergenic |
| GGATCCTCCGTTGACCCAAC+CGG | 0.397481 | 7_3:+38851577 | Msa1103280:CDS |
| TCTGGATGCAACGGAGAAAT+GGG | 0.400676 | 7_3:-38851676 | None:intergenic |
| GTCTGGATGCAACGGAGAAA+TGG | 0.411862 | 7_3:-38851677 | None:intergenic |
| TGATATTCTGGTACATAATT+GGG | 0.413260 | 7_3:-38851484 | None:intergenic |
| CTTGCAGCCATGCTCCCAGC+TGG | 0.413928 | 7_3:+38852117 | Msa1103280:CDS |
| TCCGTTGACCCAACCGGGCC+AGG | 0.426856 | 7_3:+38851583 | Msa1103280:CDS |
| CTACTCTGAATAGCATGAAA+TGG | 0.427224 | 7_3:-38849915 | None:intergenic |
| ATGCTCGAACCTGGCCCGGT+TGG | 0.432526 | 7_3:-38851592 | None:intergenic |
| CTCAATGTTGCTCCTAAAGA+TGG | 0.435432 | 7_3:+38852069 | Msa1103280:CDS |
| GGCTTTCGATCATTACATAC+AGG | 0.439419 | 7_3:+38849948 | Msa1103280:CDS |
| AGTAGATAGTAATGTAGAAA+TGG | 0.442094 | 7_3:+38852143 | Msa1103280:CDS |
| TAACGAGTTCGGCAGCAGTC+TGG | 0.456635 | 7_3:-38851694 | None:intergenic |
| GAGACAATTAGCCGATGTAT+TGG | 0.458195 | 7_3:-38851653 | None:intergenic |
| ACCTGGCCCGGTTGGGTCAA+CGG | 0.459559 | 7_3:-38851584 | None:intergenic |
| TTTCAACAAGTAATCTCAAA+GGG | 0.461415 | 7_3:+38849759 | None:intergenic |
| GAAGCTTTATGAGGAAATAT+AGG | 0.462527 | 7_3:-38853417 | None:intergenic |
| ACTTCCACGGACATCGTTAA+CGG | 0.467955 | 7_3:-38851729 | None:intergenic |
| TGAAATGCTCGAACCTGGCC+CGG | 0.472957 | 7_3:-38851596 | None:intergenic |
| ATAAACCTCAGCTGCCTAAG+TGG | 0.474299 | 7_3:+38852294 | Msa1103280:intron |
| TACTGTCCCAGCTGGGAGCA+TGG | 0.478327 | 7_3:-38852124 | None:intergenic |
| CATTGATCCTTCAAAAGTAA+AGG | 0.483146 | 7_3:+38851772 | Msa1103280:CDS |
| TATCACTCAGAAGCTTTATG+AGG | 0.483225 | 7_3:-38853426 | None:intergenic |
| AGAGAGAGCAATAACGAGTT+CGG | 0.495160 | 7_3:-38851705 | None:intergenic |
| CTATTTGAAATGCTCGAACC+TGG | 0.495767 | 7_3:-38851601 | None:intergenic |
| CAGAGAGCTCAAAGAAGAAG+AGG | 0.497591 | 7_3:-38849799 | None:intergenic |
| TTTAATGTATTAACTCATAG+TGG | 0.499666 | 7_3:+38853380 | Msa1103280:CDS |
| TCTGGTACATAATTGGGTGT+TGG | 0.519486 | 7_3:-38851478 | None:intergenic |
| ATCCCACGGCCGCGCAGCCG+TGG | 0.519529 | 7_3:-38851558 | None:intergenic |
| TTGGAAGACCAAGACTTTGT+CGG | 0.523057 | 7_3:-38851634 | None:intergenic |
| TTACTATCTACTGTCCCAGC+TGG | 0.523796 | 7_3:-38852132 | None:intergenic |
| TCGATAACTTTGTACCCTCA+TGG | 0.526284 | 7_3:+38851531 | Msa1103280:CDS |
| AAAACTGATTCTCCCCACTT+AGG | 0.527940 | 7_3:-38852308 | None:intergenic |
| CTTCTTTGTTCATACAAACA+TGG | 0.529030 | 7_3:+38849857 | Msa1103280:exon |
| CAAAGTATCCGACAAAGTCT+TGG | 0.530959 | 7_3:+38851626 | Msa1103280:CDS |
| CAGTAGGATATTTATCTGCA+AGG | 0.533834 | 7_3:-38852367 | None:intergenic |
| GAGCTCAAAGAAGAAGAGGT+TGG | 0.535491 | 7_3:-38849795 | None:intergenic |
| AGAGATCACTCCCTTATTGG+TGG | 0.537631 | 7_3:+38853353 | Msa1103280:CDS |
| GATCCTCCGTTGACCCAACC+GGG | 0.542648 | 7_3:+38851578 | Msa1103280:CDS |
| TGTAGAAATGGTCTATAAAG+AGG | 0.546137 | 7_3:+38852155 | Msa1103280:CDS |
| AACCACGGCTGCGCGGCCGT+GGG | 0.547729 | 7_3:+38851556 | Msa1103280:CDS |
| TTGCAGCCATGCTCCCAGCT+GGG | 0.547916 | 7_3:+38852118 | Msa1103280:CDS |
| CGCAGCCGTGGTTGTCCATG+AGG | 0.561900 | 7_3:-38851546 | None:intergenic |
| TAAACCTCAGCTGCCTAAGT+GGG | 0.564216 | 7_3:+38852295 | Msa1103280:intron |
| ATTCAGAGTAGTAAAGTAGC+TGG | 0.575106 | 7_3:+38849927 | Msa1103280:CDS |
| TACTATCTACTGTCCCAGCT+GGG | 0.587301 | 7_3:-38852131 | None:intergenic |
| ACAAACAACAAGTTCTCAGT+AGG | 0.589570 | 7_3:-38852383 | None:intergenic |
| TTGGAATATGGAATCAAAGT+GGG | 0.590072 | 7_3:+38853513 | Msa1103280:three_prime_UTR |
| TGGGTCAACGGAGGATCCCA+CGG | 0.590964 | 7_3:-38851572 | None:intergenic |
| CGGCAGCAGTCTGGATGCAA+CGG | 0.591338 | 7_3:-38851685 | None:intergenic |
| AACTTGTTGTTTGTTACACA+TGG | 0.599756 | 7_3:+38852392 | Msa1103280:CDS |
| TTCAGGTGAAGGAATTGAAG+TGG | 0.599842 | 7_3:+38853247 | Msa1103280:intron |
| GTAGATAAAGTGCAATATTG+TGG | 0.601012 | 7_3:+38853299 | Msa1103280:CDS |
| GCAGCCGTGGTTGTCCATGA+GGG | 0.601386 | 7_3:-38851545 | None:intergenic |
| TAACTCATAGTGGTCAAAGT+GGG | 0.604726 | 7_3:+38853390 | Msa1103280:CDS |
| GTCTTGGTCTTCCAATACAT+CGG | 0.625173 | 7_3:+38851642 | Msa1103280:CDS |
| ATTGGAATATGGAATCAAAG+TGG | 0.627267 | 7_3:+38853512 | Msa1103280:three_prime_UTR |
| AACTCATAGTGGTCAAAGTG+GGG | 0.654464 | 7_3:+38853391 | Msa1103280:CDS |
| TGTCACTAATGTCACTTCCA+CGG | 0.655460 | 7_3:-38851742 | None:intergenic |
| CTGGATGCAACGGAGAAATG+GGG | 0.663171 | 7_3:-38851675 | None:intergenic |
| AATATCATTGTGATGAGGCA+TGG | 0.665963 | 7_3:+38851500 | Msa1103280:CDS |
| AAACCTCAGCTGCCTAAGTG+GGG | 0.666248 | 7_3:+38852296 | Msa1103280:intron |
| TGTACCCTCATGGACAACCA+CGG | 0.667940 | 7_3:+38851541 | Msa1103280:CDS |
| ACCAGAATATCATTGTGATG+AGG | 0.672322 | 7_3:+38851495 | Msa1103280:CDS |
| TTAACTCATAGTGGTCAAAG+TGG | 0.674484 | 7_3:+38853389 | Msa1103280:CDS |
| TCTGCCGTTAACGATGTCCG+TGG | 0.679417 | 7_3:+38851725 | Msa1103280:CDS |
| CATGGACAACCACGGCTGCG+CGG | 0.680171 | 7_3:+38851549 | Msa1103280:CDS |
| TGGCCCGGTTGGGTCAACGG+AGG | 0.694421 | 7_3:-38851581 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAATCAACT+AGG | - | chr7_3:38850872-38850891 | None:intergenic | 10.0% |
| !!! | TTTATTTTAAAAAGTGAAAA+TGG | - | chr7_3:38850977-38850996 | None:intergenic | 10.0% |
| !!! | AAAAATTAAAGCAATTTTTT+TGG | + | chr7_3:38851854-38851873 | Msa1103280:intron | 10.0% |
| !!! | AAAATTAAAGCAATTTTTTT+GGG | + | chr7_3:38851855-38851874 | Msa1103280:intron | 10.0% |
| !! | ATAAAATTAACTAATTATGA+TGG | - | chr7_3:38852199-38852218 | None:intergenic | 10.0% |
| !!! | TAATATTTTATATTTAGGAC+AGG | + | chr7_3:38850027-38850046 | Msa1103280:intron | 15.0% |
| !!! | AATATTTTATATTTAGGACA+GGG | + | chr7_3:38850028-38850047 | Msa1103280:intron | 15.0% |
| !! | TTAAAATAGAAATCTCATAT+TGG | + | chr7_3:38850221-38850240 | Msa1103280:intron | 15.0% |
| !!! | TTTAAAACAACTAATTGTTT+TGG | - | chr7_3:38850301-38850320 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAACATATTCG+TGG | + | chr7_3:38850529-38850548 | Msa1103280:intron | 15.0% |
| !! | TAAGATATATTAATATAGGT+TGG | - | chr7_3:38851033-38851052 | None:intergenic | 15.0% |
| !!! | AGCTAAAGTTTTTTATATAT+GGG | - | chr7_3:38851396-38851415 | None:intergenic | 15.0% |
| !!! | TAGCTAAAGTTTTTTATATA+TGG | - | chr7_3:38851397-38851416 | None:intergenic | 15.0% |
| !!! | AAATTAAAGCAATTTTTTTG+GGG | + | chr7_3:38851856-38851875 | Msa1103280:intron | 15.0% |
| !!! | TAAAATCATGTTTTCAATTA+TGG | - | chr7_3:38852631-38852650 | None:intergenic | 15.0% |
| !!! | GAAAACATGATTTTAAATTA+TGG | + | chr7_3:38852636-38852655 | Msa1103280:intron | 15.0% |
| !!! | TTTTGCTAATTTTTTTATTG+AGG | + | chr7_3:38852799-38852818 | Msa1103280:intron | 15.0% |
| !!! | CTATTCTAATTTGTAATTTT+TGG | + | chr7_3:38853025-38853044 | Msa1103280:intron | 15.0% |
| !!! | AATGTTATTTGTTAAATGAA+TGG | + | chr7_3:38853175-38853194 | Msa1103280:intron | 15.0% |
| !! | AAAAGATTATAAACTTGATA+TGG | - | chr7_3:38853469-38853488 | None:intergenic | 15.0% |
| !! | TTCCTTAACGTATATTAATT+AGG | + | chr7_3:38850151-38850170 | Msa1103280:intron | 20.0% |
| !! | TCCTTAACGTATATTAATTA+GGG | + | chr7_3:38850152-38850171 | Msa1103280:intron | 20.0% |
| !!! | TATCTTTCAATCTTCAATTT+TGG | + | chr7_3:38850791-38850810 | Msa1103280:intron | 20.0% |
| !!! | CAATGTTATTTTTTTTAAGG+AGG | - | chr7_3:38851010-38851029 | None:intergenic | 20.0% |
| !!! | TGGCAATGTTATTTTTTTTA+AGG | - | chr7_3:38851013-38851032 | None:intergenic | 20.0% |
| !! | CACGTAAGATATATTAATAT+AGG | - | chr7_3:38851037-38851056 | None:intergenic | 20.0% |
| !! | CTATATTAATATATCTTACG+TGG | + | chr7_3:38851035-38851054 | Msa1103280:intron | 20.0% |
| !!! | TCATAGTTGAGATTTTATTT+TGG | + | chr7_3:38851165-38851184 | Msa1103280:intron | 20.0% |
| !! | TTAGTATAATAAGAATGCAA+TGG | - | chr7_3:38851361-38851380 | None:intergenic | 20.0% |
| !!! | ATTGTTTCATTTATTTGCTA+AGG | + | chr7_3:38851801-38851820 | Msa1103280:intron | 20.0% |
| !!! | AATTAAAGCAATTTTTTTGG+GGG | + | chr7_3:38851857-38851876 | Msa1103280:intron | 20.0% |
| !! | TGCCTGTAATTAAATATTAT+TGG | + | chr7_3:38852246-38852265 | Msa1103280:intron | 20.0% |
| !! | GCCTGTAATTAAATATTATT+GGG | + | chr7_3:38852247-38852266 | Msa1103280:intron | 20.0% |
| !! | CCTGTAATTAAATATTATTG+GGG | + | chr7_3:38852248-38852267 | Msa1103280:intron | 20.0% |
| !!! | GATTTCTCTAAAAAGTTAAA+TGG | - | chr7_3:38852439-38852458 | None:intergenic | 20.0% |
| !! | AAGGTGTAAATATCTTTATA+TGG | + | chr7_3:38852472-38852491 | Msa1103280:intron | 20.0% |
| !! | ATATCTTTATATGGTATGTT+TGG | + | chr7_3:38852481-38852500 | Msa1103280:intron | 20.0% |
| !!! | CAATTTTCAACAACTTTTTA+GGG | - | chr7_3:38852960-38852979 | None:intergenic | 20.0% |
| !! | ATTAAAATTTCCACCAATAA+GGG | - | chr7_3:38853366-38853385 | None:intergenic | 20.0% |
| !! | TTTAATGTATTAACTCATAG+TGG | + | chr7_3:38853380-38853399 | Msa1103280:CDS | 20.0% |
| !! | ATTGTGTAACTAAATTAGAT+TGG | + | chr7_3:38853494-38853513 | Msa1103280:three_prime_UTR | 20.0% |
| !! | AACTAAATTAGATTGGAATA+TGG | + | chr7_3:38853501-38853520 | Msa1103280:three_prime_UTR | 20.0% |
| !!! | TTTTACAAGACTCAATTTTA+CGG | + | chr7_3:38853733-38853752 | Msa1103280:three_prime_UTR | 20.0% |
| ! | CCTTAACGTATATTAATTAG+GGG | + | chr7_3:38850153-38850172 | Msa1103280:intron | 25.0% |
| ! | GTTATCATGGTGTAATTATT+GGG | - | chr7_3:38850352-38850371 | None:intergenic | 25.0% |
| ! | TTATACAATCATGGTTATCA+TGG | - | chr7_3:38850365-38850384 | None:intergenic | 25.0% |
| ! | GAAGAGTGATAATTTATCTT+TGG | + | chr7_3:38850586-38850605 | Msa1103280:intron | 25.0% |
| ! | ATATACAACACAATACTGAT+AGG | - | chr7_3:38850931-38850950 | None:intergenic | 25.0% |
| ! | TGTGTTGTATATTTCTTTGT+AGG | + | chr7_3:38850939-38850958 | Msa1103280:intron | 25.0% |
| !!! | GTTATTTTTTTTAAGGAGGT+TGG | - | chr7_3:38851006-38851025 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTCTAAGAATGCG+TGG | - | chr7_3:38851219-38851238 | None:intergenic | 25.0% |
| ! | GGAAAATGTATATTAATGCA+GGG | - | chr7_3:38851274-38851293 | None:intergenic | 25.0% |
| ! | AGGAAAATGTATATTAATGC+AGG | - | chr7_3:38851275-38851294 | None:intergenic | 25.0% |
| ! | GTTTACTTCAAATTTCAACA+AGG | - | chr7_3:38851295-38851314 | None:intergenic | 25.0% |
| ! | TTTAAGAGAAAACCAAAGTT+TGG | + | chr7_3:38851451-38851470 | Msa1103280:CDS | 25.0% |
| ! | TGATATTCTGGTACATAATT+GGG | - | chr7_3:38851487-38851506 | None:intergenic | 25.0% |
| ! | ATGATATTCTGGTACATAAT+TGG | - | chr7_3:38851488-38851507 | None:intergenic | 25.0% |
| !!! | ATTAAAGCAATTTTTTTGGG+GGG | + | chr7_3:38851858-38851877 | Msa1103280:intron | 25.0% |
| ! | TTAGTGTTTGTTTGATTATG+TGG | - | chr7_3:38851949-38851968 | None:intergenic | 25.0% |
| ! | AAACTCAAATTTCCATCTTT+AGG | - | chr7_3:38852084-38852103 | None:intergenic | 25.0% |
| ! | AGTAGATAGTAATGTAGAAA+TGG | + | chr7_3:38852143-38852162 | Msa1103280:CDS | 25.0% |
| ! | CCCCAATAATATTTAATTAC+AGG | - | chr7_3:38852251-38852270 | None:intergenic | 25.0% |
| !!! | GAAATCCATGTTGATTTTTA+AGG | + | chr7_3:38852453-38852472 | Msa1103280:intron | 25.0% |
| ! | TTACACCTTAAAAATCAACA+TGG | - | chr7_3:38852461-38852480 | None:intergenic | 25.0% |
| ! | TCAATCATAGTTTCAAATTG+TGG | - | chr7_3:38852770-38852789 | None:intergenic | 25.0% |
| ! | TCACAAAAGTTGTTGAAAAT+TGG | - | chr7_3:38852841-38852860 | None:intergenic | 25.0% |
| ! | ATAACAATAGAGAGAGAAAA+AGG | - | chr7_3:38852907-38852926 | None:intergenic | 25.0% |
| !! | TTGTTATTGTCCAATAAGAA+TGG | + | chr7_3:38852920-38852939 | Msa1103280:intron | 25.0% |
| !! | CCAATTTTCAACAACTTTTT+AGG | - | chr7_3:38852961-38852980 | None:intergenic | 25.0% |
| ! | CCTAAAAAGTTGTTGAAAAT+TGG | + | chr7_3:38852958-38852977 | Msa1103280:intron | 25.0% |
| ! | CAACAGCAATAATAAAAAAG+AGG | - | chr7_3:38853000-38853019 | None:intergenic | 25.0% |
| ! | AATTAAATTGAACCTGTTTC+AGG | + | chr7_3:38853230-38853249 | Msa1103280:intron | 25.0% |
| ! | CATTAAAATTTCCACCAATA+AGG | - | chr7_3:38853367-38853386 | None:intergenic | 25.0% |
| ! | CAAGAAATGAAAGAGTTAAA+AGG | + | chr7_3:38853649-38853668 | Msa1103280:three_prime_UTR | 25.0% |
| !! | TTTGAGTTTAATTCTCTTCA+AGG | - | chr7_3:38853707-38853726 | None:intergenic | 25.0% |
| !! | TTTACAAGACTCAATTTTAC+GGG | + | chr7_3:38853734-38853753 | Msa1103280:three_prime_UTR | 25.0% |
| CTTCTTTGTTCATACAAACA+TGG | + | chr7_3:38849857-38849876 | Msa1103280:exon | 30.0% | |
| CCCCTAATTAATATACGTTA+AGG | - | chr7_3:38850156-38850175 | None:intergenic | 30.0% | |
| GGTTATCATGGTGTAATTAT+TGG | - | chr7_3:38850353-38850372 | None:intergenic | 30.0% | |
| ACCATGATTGTATAACCATA+CGG | + | chr7_3:38850370-38850389 | Msa1103280:intron | 30.0% | |
| GTGAATTAGAGTTCAAATCT+TGG | + | chr7_3:38850405-38850424 | Msa1103280:intron | 30.0% | |
| !!! | CACGAATAGGCTTTTTTTTA+AGG | - | chr7_3:38850557-38850576 | None:intergenic | 30.0% |
| CTTAAAAAAAAGCCTATTCG+TGG | + | chr7_3:38850555-38850574 | Msa1103280:intron | 30.0% | |
| ! | TATCTTTGGAAAATGCTGTA+TGG | + | chr7_3:38850600-38850619 | Msa1103280:intron | 30.0% |
| AAAGAAAAATGGTCATCCAA+TGG | - | chr7_3:38850668-38850687 | None:intergenic | 30.0% | |
| GTAGATGGCAAAATAAATGT+GGG | - | chr7_3:38850711-38850730 | None:intergenic | 30.0% | |
| ! | CTTTCAATCTTCAATTTTGG+TGG | + | chr7_3:38850794-38850813 | Msa1103280:intron | 30.0% |
| TCTAAACCTATACATTGAAG+CGG | - | chr7_3:38850827-38850846 | None:intergenic | 30.0% | |
| AAAAATCAACTAGGTGCTTT+AGG | - | chr7_3:38850863-38850882 | None:intergenic | 30.0% | |
| ATTTAAGAAATTTCGTGCGA+AGG | - | chr7_3:38851324-38851343 | None:intergenic | 30.0% | |
| CATTGATCCTTCAAAAGTAA+AGG | + | chr7_3:38851772-38851791 | Msa1103280:CDS | 30.0% | |
| !! | TATCTGACCTTTACTTTTGA+AGG | - | chr7_3:38851782-38851801 | None:intergenic | 30.0% |
| TGTAGAAATGGTCTATAAAG+AGG | + | chr7_3:38852155-38852174 | Msa1103280:CDS | 30.0% | |
| !! | AACTTGTTGTTTGTTACACA+TGG | + | chr7_3:38852392-38852411 | Msa1103280:CDS | 30.0% |
| ! | TTGTGGCTTCTATATTTTCA+CGG | - | chr7_3:38852550-38852569 | None:intergenic | 30.0% |
| AAATTGTTACATCAGGCTTA+AGG | + | chr7_3:38852568-38852587 | Msa1103280:intron | 30.0% | |
| ! | TCGCAATGTAAAGAATTTTG+AGG | + | chr7_3:38852666-38852685 | Msa1103280:intron | 30.0% |
| TAAAAAAACACATGAACACG+CGG | - | chr7_3:38852724-38852743 | None:intergenic | 30.0% | |
| ! | TCAAATTGTGGTTGTGTTTT+TGG | - | chr7_3:38852758-38852777 | None:intergenic | 30.0% |
| !!! | CCTTTTTTCTCCATTCTTAT+TGG | - | chr7_3:38852933-38852952 | None:intergenic | 30.0% |
| CCAATAAGAATGGAGAAAAA+AGG | + | chr7_3:38852930-38852949 | Msa1103280:intron | 30.0% | |
| !!! | TAATTTTTGGCTTTCTTCTC+TGG | + | chr7_3:38853038-38853057 | Msa1103280:intron | 30.0% |
| TTCATTCAAAAAAGATGTCG+TGG | + | chr7_3:38853277-38853296 | Msa1103280:CDS | 30.0% | |
| GTAGATAAAGTGCAATATTG+TGG | + | chr7_3:38853299-38853318 | Msa1103280:CDS | 30.0% | |
| ! | GAAGCTTTATGAGGAAATAT+AGG | - | chr7_3:38853420-38853439 | None:intergenic | 30.0% |
| ATTGGAATATGGAATCAAAG+TGG | + | chr7_3:38853512-38853531 | Msa1103280:three_prime_UTR | 30.0% | |
| TTGGAATATGGAATCAAAGT+GGG | + | chr7_3:38853513-38853532 | Msa1103280:three_prime_UTR | 30.0% | |
| CTACTCTGAATAGCATGAAA+TGG | - | chr7_3:38849918-38849937 | None:intergenic | 35.0% | |
| ATTCAGAGTAGTAAAGTAGC+TGG | + | chr7_3:38849927-38849946 | Msa1103280:CDS | 35.0% | |
| CCATGATTGTATAACCATAC+GGG | + | chr7_3:38850371-38850390 | Msa1103280:intron | 35.0% | |
| AACTCTAATTCACCGAGTTA+TGG | - | chr7_3:38850398-38850417 | None:intergenic | 35.0% | |
| ! | TAGAGCTTTTAACCTATTCG+TGG | + | chr7_3:38850492-38850511 | Msa1103280:intron | 35.0% |
| TTGAGTAAAGAACCACGAAT+AGG | - | chr7_3:38850507-38850526 | None:intergenic | 35.0% | |
| !! | CTTCGTTTTTAACCACGAAT+AGG | - | chr7_3:38850570-38850589 | None:intergenic | 35.0% |
| GGTAGATGGCAAAATAAATG+TGG | - | chr7_3:38850712-38850731 | None:intergenic | 35.0% | |
| AATAGTCCGCTTCAATGTAT+AGG | + | chr7_3:38850818-38850837 | Msa1103280:intron | 35.0% | |
| CAACACAATACTGATAGGAT+AGG | - | chr7_3:38850926-38850945 | None:intergenic | 35.0% | |
| ACTGTCACGTATATAAAGAG+AGG | - | chr7_3:38851422-38851441 | None:intergenic | 35.0% | |
| ACCAGAATATCATTGTGATG+AGG | + | chr7_3:38851495-38851514 | Msa1103280:CDS | 35.0% | |
| AATATCATTGTGATGAGGCA+TGG | + | chr7_3:38851500-38851519 | Msa1103280:CDS | 35.0% | |
| AGGTTCGAGCATTTCAAATA+GGG | + | chr7_3:38851603-38851622 | Msa1103280:CDS | 35.0% | |
| !!! | TTTTGGGGGGATTAGTTAAT+TGG | + | chr7_3:38851871-38851890 | Msa1103280:intron | 35.0% |
| ! | AGAATCAGTTTTGCAAGCTA+GGG | + | chr7_3:38852319-38852338 | Msa1103280:CDS | 35.0% |
| CAGTAGGATATTTATCTGCA+AGG | - | chr7_3:38852370-38852389 | None:intergenic | 35.0% | |
| ACAAACAACAAGTTCTCAGT+AGG | - | chr7_3:38852386-38852405 | None:intergenic | 35.0% | |
| AAGCCACAAATTGTTACATC+AGG | + | chr7_3:38852561-38852580 | Msa1103280:intron | 35.0% | |
| AAGCCTGATGTAACAATTTG+TGG | - | chr7_3:38852567-38852586 | None:intergenic | 35.0% | |
| AATTCTTTACATTGCGACTC+TGG | - | chr7_3:38852663-38852682 | None:intergenic | 35.0% | |
| TGCAATTTCGATGTCATTGT+GGG | - | chr7_3:38852694-38852713 | None:intergenic | 35.0% | |
| TTGCAATTTCGATGTCATTG+TGG | - | chr7_3:38852695-38852714 | None:intergenic | 35.0% | |
| GAGTGATCTCTTTCGAAAAT+AGG | - | chr7_3:38853344-38853363 | None:intergenic | 35.0% | |
| TTAACTCATAGTGGTCAAAG+TGG | + | chr7_3:38853389-38853408 | Msa1103280:CDS | 35.0% | |
| TAACTCATAGTGGTCAAAGT+GGG | + | chr7_3:38853390-38853409 | Msa1103280:CDS | 35.0% | |
| ! | TATCACTCAGAAGCTTTATG+AGG | - | chr7_3:38853429-38853448 | None:intergenic | 35.0% |
| ! | TCTTGTCAAACAATCGATTC+AGG | - | chr7_3:38853634-38853653 | None:intergenic | 35.0% |
| GGCTTTCGATCATTACATAC+AGG | + | chr7_3:38849948-38849967 | Msa1103280:CDS | 40.0% | |
| CCCGTATGGTTATACAATCA+TGG | - | chr7_3:38850374-38850393 | None:intergenic | 40.0% | |
| ACACGACAATTTCAGACCAT+TGG | + | chr7_3:38850649-38850668 | Msa1103280:intron | 40.0% | |
| ATTTCGACGACACAACAATC+AGG | - | chr7_3:38850733-38850752 | None:intergenic | 40.0% | |
| !!! | GGTGTTGGTTTTCCAAACTT+TGG | - | chr7_3:38851466-38851485 | None:intergenic | 40.0% |
| TCTGGTACATAATTGGGTGT+TGG | - | chr7_3:38851481-38851500 | None:intergenic | 40.0% | |
| GCCTCATCACAATGATATTC+TGG | - | chr7_3:38851499-38851518 | None:intergenic | 40.0% | |
| TCGATAACTTTGTACCCTCA+TGG | + | chr7_3:38851531-38851550 | Msa1103280:CDS | 40.0% | |
| ! | CTATTTGAAATGCTCGAACC+TGG | - | chr7_3:38851604-38851623 | None:intergenic | 40.0% |
| CAGGTTCGAGCATTTCAAAT+AGG | + | chr7_3:38851602-38851621 | Msa1103280:CDS | 40.0% | |
| ! | CAAAGTATCCGACAAAGTCT+TGG | + | chr7_3:38851626-38851645 | Msa1103280:CDS | 40.0% |
| TTGGAAGACCAAGACTTTGT+CGG | - | chr7_3:38851637-38851656 | None:intergenic | 40.0% | |
| ! | GTCTTGGTCTTCCAATACAT+CGG | + | chr7_3:38851642-38851661 | Msa1103280:CDS | 40.0% |
| GAGACAATTAGCCGATGTAT+TGG | - | chr7_3:38851656-38851675 | None:intergenic | 40.0% | |
| AGAGAGAGCAATAACGAGTT+CGG | - | chr7_3:38851708-38851727 | None:intergenic | 40.0% | |
| ! | TGTCACTAATGTCACTTCCA+CGG | - | chr7_3:38851745-38851764 | None:intergenic | 40.0% |
| ACCTGCAATTGTGGAAATGA+GGG | - | chr7_3:38852000-38852019 | None:intergenic | 40.0% | |
| CTCAATGTTGCTCCTAAAGA+TGG | + | chr7_3:38852069-38852088 | Msa1103280:CDS | 40.0% | |
| ! | AAAACTGATTCTCCCCACTT+AGG | - | chr7_3:38852311-38852330 | None:intergenic | 40.0% |
| ! | GAGAATCAGTTTTGCAAGCT+AGG | + | chr7_3:38852318-38852337 | Msa1103280:CDS | 40.0% |
| !!! | GCTACGTTTGTTTTAGCGAT+AGG | - | chr7_3:38852609-38852628 | None:intergenic | 40.0% |
| GCAATTTCGATGTCATTGTG+GGG | - | chr7_3:38852693-38852712 | None:intergenic | 40.0% | |
| TTCTCTGGTAAACCTTGTGT+CGG | + | chr7_3:38853053-38853072 | Msa1103280:intron | 40.0% | |
| ! | ATTGAACCTGTTTCAGGTGA+AGG | + | chr7_3:38853236-38853255 | Msa1103280:intron | 40.0% |
| TCAATTCCTTCACCTGAAAC+AGG | - | chr7_3:38853245-38853264 | None:intergenic | 40.0% | |
| TTCAGGTGAAGGAATTGAAG+TGG | + | chr7_3:38853247-38853266 | Msa1103280:intron | 40.0% | |
| GAAAGAGATCACTCCCTTAT+TGG | + | chr7_3:38853350-38853369 | Msa1103280:CDS | 40.0% | |
| AACTCATAGTGGTCAAAGTG+GGG | + | chr7_3:38853391-38853410 | Msa1103280:CDS | 40.0% | |
| GAGCTCAAAGAAGAAGAGGT+TGG | - | chr7_3:38849798-38849817 | None:intergenic | 45.0% | |
| CAGAGAGCTCAAAGAAGAAG+AGG | - | chr7_3:38849802-38849821 | None:intergenic | 45.0% | |
| AACCATACGGGTCCATAACT+CGG | + | chr7_3:38850383-38850402 | Msa1103280:intron | 45.0% | |
| GAAAATGCTGTATGGCACGA+TGG | + | chr7_3:38850608-38850627 | Msa1103280:intron | 45.0% | |
| CGACACAACAATCAGGTAGA+TGG | - | chr7_3:38850726-38850745 | None:intergenic | 45.0% | |
| TGTTGTGTCGTCGAAATTCG+TGG | + | chr7_3:38850736-38850755 | Msa1103280:intron | 45.0% | |
| GTTGTGTCGTCGAAATTCGT+GGG | + | chr7_3:38850737-38850756 | Msa1103280:intron | 45.0% | |
| TCTGGATGCAACGGAGAAAT+GGG | - | chr7_3:38851679-38851698 | None:intergenic | 45.0% | |
| ACTTCCACGGACATCGTTAA+CGG | - | chr7_3:38851732-38851751 | None:intergenic | 45.0% | |
| TCCCTCATTTCCACAATTGC+AGG | + | chr7_3:38851996-38852015 | Msa1103280:intron | 45.0% | |
| GACCTGCAATTGTGGAAATG+AGG | - | chr7_3:38852001-38852020 | None:intergenic | 45.0% | |
| TCAAGAGAGACCTGCAATTG+TGG | - | chr7_3:38852009-38852028 | None:intergenic | 45.0% | |
| TTGCAGGTCTCTCTTGAGTA+TGG | + | chr7_3:38852012-38852031 | Msa1103280:intron | 45.0% | |
| TACTATCTACTGTCCCAGCT+GGG | - | chr7_3:38852134-38852153 | None:intergenic | 45.0% | |
| TTACTATCTACTGTCCCAGC+TGG | - | chr7_3:38852135-38852154 | None:intergenic | 45.0% | |
| ATAAACCTCAGCTGCCTAAG+TGG | + | chr7_3:38852294-38852313 | Msa1103280:intron | 45.0% | |
| TAAACCTCAGCTGCCTAAGT+GGG | + | chr7_3:38852295-38852314 | Msa1103280:intron | 45.0% | |
| TCTCTGGTAAACCTTGTGTC+GGG | + | chr7_3:38853054-38853073 | Msa1103280:intron | 45.0% | |
| AGAGATCACTCCCTTATTGG+TGG | + | chr7_3:38853353-38853372 | Msa1103280:CDS | 45.0% | |
| !!! | TTCAATAATATTTTATATTT+AGG | + | chr7_3:38850022-38850041 | Msa1103280:intron | 5.0% |
| !! | ATAATAAATAAAAAGAAAAA+TGG | - | chr7_3:38850679-38850698 | None:intergenic | 5.0% |
| CGTGTTCTGTCGTGCTTGTA+TGG | - | chr7_3:38850634-38850653 | None:intergenic | 50.0% | |
| TGTACCCTCATGGACAACCA+CGG | + | chr7_3:38851541-38851560 | Msa1103280:CDS | 50.0% | |
| CTGGATGCAACGGAGAAATG+GGG | - | chr7_3:38851678-38851697 | None:intergenic | 50.0% | |
| GTCTGGATGCAACGGAGAAA+TGG | - | chr7_3:38851680-38851699 | None:intergenic | 50.0% | |
| AAACCTCAGCTGCCTAAGTG+GGG | + | chr7_3:38852296-38852315 | Msa1103280:intron | 50.0% | |
| CAGGCTTAAGGTGTGTTGAG+TGG | + | chr7_3:38852580-38852599 | Msa1103280:intron | 50.0% | |
| CACCGAGTTATGGACCCGTA+TGG | - | chr7_3:38850388-38850407 | None:intergenic | 55.0% | |
| TGAAATGCTCGAACCTGGCC+CGG | - | chr7_3:38851599-38851618 | None:intergenic | 55.0% | |
| TAACGAGTTCGGCAGCAGTC+TGG | - | chr7_3:38851697-38851716 | None:intergenic | 55.0% | |
| TCTGCCGTTAACGATGTCCG+TGG | + | chr7_3:38851725-38851744 | Msa1103280:CDS | 55.0% | |
| CTGGTAAACCTTGTGTCGGG+AGG | + | chr7_3:38853057-38853076 | Msa1103280:intron | 55.0% | |
| ACGACTATCCTCCCGACACA+AGG | - | chr7_3:38853068-38853087 | None:intergenic | 55.0% | |
| GTGTCGGGAGGATAGTCGTT+TGG | + | chr7_3:38853069-38853088 | Msa1103280:intron | 55.0% | |
| GCAGCCGTGGTTGTCCATGA+GGG | - | chr7_3:38851548-38851567 | None:intergenic | 60.0% | |
| TGGGTCAACGGAGGATCCCA+CGG | - | chr7_3:38851575-38851594 | None:intergenic | 60.0% | |
| GGATCCTCCGTTGACCCAAC+CGG | + | chr7_3:38851577-38851596 | Msa1103280:CDS | 60.0% | |
| GATCCTCCGTTGACCCAACC+GGG | + | chr7_3:38851578-38851597 | Msa1103280:CDS | 60.0% | |
| CGGCAGCAGTCTGGATGCAA+CGG | - | chr7_3:38851688-38851707 | None:intergenic | 60.0% | |
| TTGCAGCCATGCTCCCAGCT+GGG | + | chr7_3:38852118-38852137 | Msa1103280:CDS | 60.0% | |
| TACTGTCCCAGCTGGGAGCA+TGG | - | chr7_3:38852127-38852146 | None:intergenic | 60.0% | |
| TCTCCCCACTTAGGCAGCTG+AGG | - | chr7_3:38852302-38852321 | None:intergenic | 60.0% | |
| CGCAGCCGTGGTTGTCCATG+AGG | - | chr7_3:38851549-38851568 | None:intergenic | 65.0% | |
| CATGGACAACCACGGCTGCG+CGG | + | chr7_3:38851549-38851568 | Msa1103280:CDS | 65.0% | |
| ACCTGGCCCGGTTGGGTCAA+CGG | - | chr7_3:38851587-38851606 | None:intergenic | 65.0% | |
| TGCTCGAACCTGGCCCGGTT+GGG | - | chr7_3:38851594-38851613 | None:intergenic | 65.0% | |
| ATGCTCGAACCTGGCCCGGT+TGG | - | chr7_3:38851595-38851614 | None:intergenic | 65.0% | |
| CTTGCAGCCATGCTCCCAGC+TGG | + | chr7_3:38852117-38852136 | Msa1103280:CDS | 65.0% | |
| TGGCCCGGTTGGGTCAACGG+AGG | - | chr7_3:38851584-38851603 | None:intergenic | 70.0% | |
| TCCGTTGACCCAACCGGGCC+AGG | + | chr7_3:38851583-38851602 | Msa1103280:CDS | 70.0% | |
| AACCACGGCTGCGCGGCCGT+GGG | + | chr7_3:38851556-38851575 | Msa1103280:CDS | 75.0% | |
| ! | CAACCACGGCTGCGCGGCCG+TGG | + | chr7_3:38851555-38851574 | Msa1103280:CDS | 80.0% |
| ! | ATCCCACGGCCGCGCAGCCG+TGG | - | chr7_3:38851561-38851580 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 38849769 | 38853776 | 38849769 | ID=Msa1103280;Name=Msa1103280 |
| chr7_3 | mRNA | 38849769 | 38853776 | 38849769 | ID=Msa1103280-mRNA-1;Parent=Msa1103280;Name=Msa1103280-mRNA-1;_AED=0.06;_eAED=0.06;_QI=107|1|1|1|1|0.8|5|343|298 |
| chr7_3 | exon | 38849769 | 38849969 | 38849769 | ID=Msa1103280-mRNA-1:exon:7878;Parent=Msa1103280-mRNA-1 |
| chr7_3 | exon | 38851441 | 38851793 | 38851441 | ID=Msa1103280-mRNA-1:exon:7879;Parent=Msa1103280-mRNA-1 |
| chr7_3 | exon | 38852018 | 38852176 | 38852018 | ID=Msa1103280-mRNA-1:exon:7880;Parent=Msa1103280-mRNA-1 |
| chr7_3 | exon | 38852305 | 38852413 | 38852305 | ID=Msa1103280-mRNA-1:exon:7881;Parent=Msa1103280-mRNA-1 |
| chr7_3 | exon | 38853252 | 38853776 | 38853252 | ID=Msa1103280-mRNA-1:exon:7882;Parent=Msa1103280-mRNA-1 |
| chr7_3 | five_prime_UTR | 38849769 | 38849875 | 38849769 | ID=Msa1103280-mRNA-1:five_prime_utr;Parent=Msa1103280-mRNA-1 |
| chr7_3 | CDS | 38849876 | 38849969 | 38849876 | ID=Msa1103280-mRNA-1:cds;Parent=Msa1103280-mRNA-1 |
| chr7_3 | CDS | 38851441 | 38851793 | 38851441 | ID=Msa1103280-mRNA-1:cds;Parent=Msa1103280-mRNA-1 |
| chr7_3 | CDS | 38852018 | 38852176 | 38852018 | ID=Msa1103280-mRNA-1:cds;Parent=Msa1103280-mRNA-1 |
| chr7_3 | CDS | 38852305 | 38852413 | 38852305 | ID=Msa1103280-mRNA-1:cds;Parent=Msa1103280-mRNA-1 |
| chr7_3 | CDS | 38853252 | 38853433 | 38853252 | ID=Msa1103280-mRNA-1:cds;Parent=Msa1103280-mRNA-1 |
| chr7_3 | three_prime_UTR | 38853434 | 38853776 | 38853434 | ID=Msa1103280-mRNA-1:three_prime_utr;Parent=Msa1103280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
