Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017160 | XP_024625444.1 | 95.222 | 293 | 14 | 0 | 6 | 298 | 1 | 293 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017160 | A0A396GWS4 | 95.222 | 293 | 14 | 0 | 6 | 298 | 1 | 293 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046440 | Msa1017160 | 0.803313 | 3.700965e-49 | -8.615850e-47 |
| Msa0090200 | Msa1017160 | 0.810078 | 1.377990e-50 | -8.615850e-47 |
| Msa0091930 | Msa1017160 | 0.809671 | 1.686561e-50 | -8.615850e-47 |
| Msa0662580 | Msa1017160 | 0.832955 | 7.032785e-56 | -8.615850e-47 |
| Msa0708290 | Msa1017160 | 0.827810 | 1.273273e-54 | -8.615850e-47 |
| Msa0708300 | Msa1017160 | 0.821321 | 4.296340e-53 | -8.615850e-47 |
| Msa0780350 | Msa1017160 | 0.810468 | 1.135711e-50 | -8.615850e-47 |
| Msa0780450 | Msa1017160 | 0.840255 | 9.705451e-58 | -8.615850e-47 |
| Msa0822350 | Msa1017160 | 0.808016 | 3.809135e-50 | -8.615850e-47 |
| Msa0834030 | Msa1017160 | 0.807902 | 4.027979e-50 | -8.615850e-47 |
| Msa0137750 | Msa1017160 | 0.815602 | 8.498981e-52 | -8.615850e-47 |
| Msa0182830 | Msa1017160 | 0.814826 | 1.264035e-51 | -8.615850e-47 |
| Msa0466010 | Msa1017160 | 0.811361 | 7.273926e-51 | -8.615850e-47 |
| Msa0982780 | Msa1017160 | 0.811912 | 5.521860e-51 | -8.615850e-47 |
| Msa1017160 | Msa1084640 | 0.802911 | 4.479994e-49 | -8.615850e-47 |
| Msa1017160 | Msa1103280 | 0.845371 | 4.233891e-59 | -8.615850e-47 |
| Msa1017160 | Msa1353870 | 0.819190 | 1.322643e-52 | -8.615850e-47 |
| Msa1017160 | Msa1398900 | 0.828454 | 8.908473e-55 | -8.615850e-47 |
| Msa1017160 | Msa1400340 | 0.806488 | 8.026691e-50 | -8.615850e-47 |
| Msa1017160 | Msa1416730 | 0.801808 | 7.559948e-49 | -8.615850e-47 |
| Msa0484160 | Msa1017160 | 0.930983 | 7.383749e-94 | -8.615850e-47 |
| Msa0490380 | Msa1017160 | 0.813209 | 2.873618e-51 | -8.615850e-47 |
| Msa0574570 | Msa1017160 | 0.828062 | 1.107397e-54 | -8.615850e-47 |
| Msa0574580 | Msa1017160 | 0.803251 | 3.812073e-49 | -8.615850e-47 |
| Msa0936550 | Msa1017160 | 0.804683 | 1.920643e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017160 | MtrunA17_Chr7g0232961 | 95.222 | 293 | 14 | 0 | 6 | 298 | 1 | 293 | 0.0 | 587 |
| Msa1017160 | MtrunA17_Chr7g0232491 | 62.547 | 267 | 98 | 1 | 34 | 298 | 1 | 267 | 7.11e-125 | 357 |
| Msa1017160 | MtrunA17_Chr8g0334871 | 63.281 | 256 | 94 | 0 | 40 | 295 | 15 | 270 | 2.47e-121 | 348 |
| Msa1017160 | MtrunA17_Chr5g0405131 | 61.017 | 59 | 23 | 0 | 147 | 205 | 8 | 66 | 1.58e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017160 | AT3G60450.1 | 57.895 | 247 | 103 | 1 | 50 | 295 | 12 | 258 | 1.49e-105 | 309 |
| Msa1017160 | AT3G60450.2 | 57.895 | 247 | 103 | 1 | 50 | 295 | 44 | 290 | 2.12e-105 | 310 |
| Msa1017160 | AT3G60440.1 | 53.668 | 259 | 118 | 2 | 40 | 297 | 25 | 282 | 1.63e-97 | 289 |
| Msa1017160 | AT3G60415.1 | 54.733 | 243 | 106 | 2 | 50 | 291 | 11 | 250 | 9.08e-90 | 268 |
| Msa1017160 | AT3G60420.1 | 50.201 | 249 | 113 | 3 | 50 | 298 | 33 | 270 | 4.29e-86 | 259 |
| Msa1017160 | AT3G60440.2 | 56.398 | 211 | 91 | 1 | 40 | 249 | 25 | 235 | 1.51e-82 | 249 |
Find 82 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATATTCTGGTACATAAT+TGG | 0.153715 | 7_1:+35787320 | None:intergenic |
| GAAAGAGATCACTCCCTTAT+TGG | 0.240145 | 7_1:-35785619 | Msa1017160:CDS |
| CATTAAAATTTCCACCAATA+AGG | 0.241584 | 7_1:+35785605 | None:intergenic |
| AAACTCAAATTTCCATCTTT+AGG | 0.246362 | 7_1:+35786734 | None:intergenic |
| AAAAGATTATAAACTTGATA+TGG | 0.261418 | 7_1:+35785503 | None:intergenic |
| TTTAAGAGGAAACGAAAGTT+TGG | 0.292477 | 7_1:-35787354 | Msa1017160:CDS |
| TTGCAGGTCTCTCTTGAGTA+TGG | 0.302762 | 7_1:-35786803 | Msa1017160:intron |
| GCCTCATCACAATGATATTC+TGG | 0.327563 | 7_1:+35787309 | None:intergenic |
| ATTAAAATTTCCACCAATAA+GGG | 0.328983 | 7_1:+35785606 | None:intergenic |
| GAGTGATCTCTTTCGAAAAT+AGG | 0.329886 | 7_1:+35785628 | None:intergenic |
| CAAGAAATGAAAGAGTTAAA+AGG | 0.337294 | 7_1:-35785320 | Msa1017160:three_prime_UTR |
| CAGGTTCGAGCATTTCAAAT+AGG | 0.341397 | 7_1:-35787203 | Msa1017160:CDS |
| TTTGAGTTTAATTCTCTTCA+AGG | 0.345813 | 7_1:+35785265 | None:intergenic |
| CATCCACTGCTGCGCGGCCG+TGG | 0.358485 | 7_1:-35787250 | Msa1017160:CDS |
| AACTAAATTAGATTGGAATA+TGG | 0.365280 | 7_1:-35785468 | Msa1017160:three_prime_UTR |
| AGGTTCGAGCATTTCAAATA+GGG | 0.378872 | 7_1:-35787202 | Msa1017160:CDS |
| ATTGTGTAACTAAATTAGAT+TGG | 0.382676 | 7_1:-35785475 | Msa1017160:three_prime_UTR |
| TGCTCGAACCTGGCCCGGTT+GGG | 0.386842 | 7_1:+35787214 | None:intergenic |
| CTACTCTGAATAGCATGAAA+TGG | 0.396328 | 7_1:+35788677 | None:intergenic |
| GGATCCTCCGTTGACCCAAC+CGG | 0.397481 | 7_1:-35787228 | Msa1017160:CDS |
| TCTGGATGCAACGGAGAAAT+GGG | 0.400676 | 7_1:+35787129 | None:intergenic |
| GTCTGGATGCAACGGAGAAA+TGG | 0.411862 | 7_1:+35787128 | None:intergenic |
| TGATATTCTGGTACATAATT+GGG | 0.413260 | 7_1:+35787321 | None:intergenic |
| CTTGCAGCCATGCTCCCAGC+TGG | 0.413928 | 7_1:-35786698 | Msa1017160:CDS |
| TCCGTTGACCCAACCGGGCC+AGG | 0.426856 | 7_1:-35787222 | Msa1017160:CDS |
| ATGCTCGAACCTGGCCCGGT+TGG | 0.432526 | 7_1:+35787213 | None:intergenic |
| CTCAATGTTGCTCCTAAAGA+TGG | 0.435432 | 7_1:-35786746 | Msa1017160:CDS |
| AGTGGATAATAATGTAGAAA+TGG | 0.437329 | 7_1:-35786672 | Msa1017160:CDS |
| GGCTTTCGATCATTACATAC+AGG | 0.439419 | 7_1:-35788644 | Msa1017160:intron |
| CACTGTCCCAGCTGGGAGCA+TGG | 0.456047 | 7_1:+35786691 | None:intergenic |
| TAACGAGTTCGGCAGCAGTC+TGG | 0.456635 | 7_1:+35787111 | None:intergenic |
| GAGACAATTAGCCGATGTAT+TGG | 0.458195 | 7_1:+35787152 | None:intergenic |
| ACCTGGCCCGGTTGGGTCAA+CGG | 0.459559 | 7_1:+35787221 | None:intergenic |
| TTTCAACAAGCAATCTCAAA+GGG | 0.460716 | 7_1:-35788833 | None:intergenic |
| GAAGCTTTATGAGGAAATAT+AGG | 0.462527 | 7_1:+35785552 | None:intergenic |
| ACTTTCACGAACATCGTTAA+CGG | 0.469452 | 7_1:+35787076 | None:intergenic |
| TGAAATGCTCGAACCTGGCC+CGG | 0.472957 | 7_1:+35787209 | None:intergenic |
| CATTGATCCTTCAAAAGTAA+AGG | 0.483146 | 7_1:-35787033 | Msa1017160:intron |
| TATCACTCAGAAGCTTTATG+AGG | 0.483225 | 7_1:+35785543 | None:intergenic |
| TTATTATCCACTGTCCCAGC+TGG | 0.491510 | 7_1:+35786683 | None:intergenic |
| AAAACTGATTCTTCCCACTT+AGG | 0.491995 | 7_1:+35786510 | None:intergenic |
| AGAGAGAGCAATAACGAGTT+CGG | 0.495160 | 7_1:+35787100 | None:intergenic |
| ACAGTGAAAATGAATTTAAG+AGG | 0.495377 | 7_1:-35787368 | Msa1017160:intron |
| CTATTTGAAATGCTCGAACC+TGG | 0.495767 | 7_1:+35787204 | None:intergenic |
| CAGAGAGCTCAAAGAAGAAG+AGG | 0.497591 | 7_1:+35788793 | None:intergenic |
| TTTAATGTATTAACTCATAG+TGG | 0.499666 | 7_1:-35785589 | Msa1017160:CDS |
| ATCCACTGCTGCGCGGCCGT+GGG | 0.514908 | 7_1:-35787249 | Msa1017160:CDS |
| TCTGGTACATAATTGGGTGT+TGG | 0.519486 | 7_1:+35787327 | None:intergenic |
| ATAAACCTCAGCTACCTAAG+TGG | 0.520378 | 7_1:-35786524 | Msa1017160:intron |
| ATCCCACGGCCGCGCAGCAG+TGG | 0.520462 | 7_1:+35787247 | None:intergenic |
| TTGGAAGACCAAGACTTTGT+CGG | 0.523057 | 7_1:+35787171 | None:intergenic |
| TCGATAACTTTGTACCCTCA+TGG | 0.526284 | 7_1:-35787274 | Msa1017160:CDS |
| CAAAGTATCCGACAAAGTCT+TGG | 0.530959 | 7_1:-35787179 | Msa1017160:CDS |
| CAGTAGGATATTTATCTGCA+AGG | 0.533834 | 7_1:+35786451 | None:intergenic |
| GAGCTCAAAGAAGAAGAGGT+TGG | 0.535491 | 7_1:+35788797 | None:intergenic |
| AGAGATCACTCCCTTATTGG+TGG | 0.537631 | 7_1:-35785616 | Msa1017160:CDS |
| GATCCTCCGTTGACCCAACC+GGG | 0.542648 | 7_1:-35787227 | Msa1017160:CDS |
| TTGCAGCCATGCTCCCAGCT+GGG | 0.547916 | 7_1:-35786697 | Msa1017160:CDS |
| ATTCAGAGTAGAAAAGTAGC+TGG | 0.582853 | 7_1:-35788665 | Msa1017160:CDS |
| CATGCTCCCAGCTGGGACAG+TGG | 0.585065 | 7_1:-35786690 | Msa1017160:CDS |
| ACAAACAACAAGTTCTCAGT+AGG | 0.589570 | 7_1:+35786435 | None:intergenic |
| TTGGAATATGGAATCAAAGT+GGG | 0.590072 | 7_1:-35785456 | Msa1017160:three_prime_UTR |
| TGGGTCAACGGAGGATCCCA+CGG | 0.590964 | 7_1:+35787233 | None:intergenic |
| CGGCAGCAGTCTGGATGCAA+CGG | 0.591338 | 7_1:+35787120 | None:intergenic |
| TAAACCTCAGCTACCTAAGT+GGG | 0.596166 | 7_1:-35786523 | Msa1017160:intron |
| AACTTGTTGTTTGTTACACA+TGG | 0.599756 | 7_1:-35786426 | Msa1017160:intron |
| TTCAGGTGAAGGAATTGAAG+TGG | 0.599842 | 7_1:-35785722 | Msa1017160:intron |
| GTAGATAAAGTGCAATATTG+TGG | 0.601012 | 7_1:-35785670 | Msa1017160:CDS |
| TAACTCATAGTGGTCAAAGT+GGG | 0.604726 | 7_1:-35785579 | Msa1017160:CDS |
| TATTATCCACTGTCCCAGCT+GGG | 0.605897 | 7_1:+35786684 | None:intergenic |
| CGCAGCAGTGGATGTCCATG+AGG | 0.608561 | 7_1:+35787259 | None:intergenic |
| GTCTTGGTCTTCCAATACAT+CGG | 0.625173 | 7_1:-35787163 | Msa1017160:CDS |
| GCAGCAGTGGATGTCCATGA+GGG | 0.625543 | 7_1:+35787260 | None:intergenic |
| ATTGGAATATGGAATCAAAG+TGG | 0.627267 | 7_1:-35785457 | Msa1017160:three_prime_UTR |
| TGTAGAAATGGTCTATAGAG+AGG | 0.643315 | 7_1:-35786660 | Msa1017160:intron |
| AACTCATAGTGGTCAAAGTG+GGG | 0.654464 | 7_1:-35785578 | Msa1017160:CDS |
| CTGGATGCAACGGAGAAATG+GGG | 0.663171 | 7_1:+35787130 | None:intergenic |
| AATATCATTGTGATGAGGCA+TGG | 0.665963 | 7_1:-35787305 | Msa1017160:CDS |
| ACCAGAATATCATTGTGATG+AGG | 0.672322 | 7_1:-35787310 | Msa1017160:CDS |
| TTAACTCATAGTGGTCAAAG+TGG | 0.674484 | 7_1:-35785580 | Msa1017160:CDS |
| TGGCCCGGTTGGGTCAACGG+AGG | 0.694421 | 7_1:+35787224 | None:intergenic |
| CATGGACATCCACTGCTGCG+CGG | 0.745751 | 7_1:-35787256 | Msa1017160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAACATATTTG+TGG | - | chr7_1:35785944-35785963 | Msa1017160:intron | 10.0% |
| !! | AAAAAAAAAAAAAATCAACT+AGG | + | chr7_1:35786096-35786115 | None:intergenic | 10.0% |
| !!! | TTTATTTTAAAAAGTGAAAA+TGG | + | chr7_1:35786206-35786225 | None:intergenic | 10.0% |
| !!! | TAATATTTTATATTTAGGAC+AGG | - | chr7_1:35785472-35785491 | Msa1017160:three_prime_UTR | 15.0% |
| !!! | AATATTTTATATTTAGGACA+GGG | - | chr7_1:35785473-35785492 | Msa1017160:three_prime_UTR | 15.0% |
| !!! | TTTAAAACAACTAATTGTTT+TGG | + | chr7_1:35785743-35785762 | None:intergenic | 15.0% |
| !! | TAAGATATATTAATATAGGT+TGG | + | chr7_1:35786263-35786282 | None:intergenic | 15.0% |
| !!! | CGAAAGTTTTATATATATAT+GGG | + | chr7_1:35786626-35786645 | None:intergenic | 15.0% |
| !! | TACCTGTAATTAAATATTAA+TGG | - | chr7_1:35787465-35787484 | Msa1017160:intron | 15.0% |
| !! | ACCTGTAATTAAATATTAAT+GGG | - | chr7_1:35787466-35787485 | Msa1017160:intron | 15.0% |
| !!! | TAAAATCATGTTTTCAATTA+TGG | + | chr7_1:35787850-35787869 | None:intergenic | 15.0% |
| !!! | GAAAACATGATTTTAAATTA+TGG | - | chr7_1:35787855-35787874 | Msa1017160:intron | 15.0% |
| !!! | AATGTTATTTGTTAAATGAA+TGG | - | chr7_1:35788202-35788221 | Msa1017160:intron | 15.0% |
| !! | AAAAGATTATAAACTTGATA+TGG | + | chr7_1:35788537-35788556 | None:intergenic | 15.0% |
| !! | TTCCTTAACGTATATTAATT+AGG | - | chr7_1:35785596-35785615 | Msa1017160:CDS | 20.0% |
| !! | TCCTTAACGTATATTAATTA+GGG | - | chr7_1:35785597-35785616 | Msa1017160:CDS | 20.0% |
| !!! | TATCTTTCAATCTTCAATTT+TGG | - | chr7_1:35786015-35786034 | Msa1017160:intron | 20.0% |
| !!! | AAATGTTATTTTTTTTAGGG+AGG | + | chr7_1:35786239-35786258 | None:intergenic | 20.0% |
| !!! | GGCAAATGTTATTTTTTTTA+GGG | + | chr7_1:35786242-35786261 | None:intergenic | 20.0% |
| !!! | TGGCAAATGTTATTTTTTTT+AGG | + | chr7_1:35786243-35786262 | None:intergenic | 20.0% |
| !! | CACGTAAGATATATTAATAT+AGG | + | chr7_1:35786267-35786286 | None:intergenic | 20.0% |
| !! | CTATATTAATATATCTTACG+TGG | - | chr7_1:35786265-35786284 | Msa1017160:intron | 20.0% |
| !!! | TCATAGTTGAGATTTTATTT+TGG | - | chr7_1:35786395-35786414 | Msa1017160:intron | 20.0% |
| !! | GTTTGTTTAGTATAATAAGA+AGG | + | chr7_1:35786597-35786616 | None:intergenic | 20.0% |
| !!! | GCGAAAGTTTTATATATATA+TGG | + | chr7_1:35786627-35786646 | None:intergenic | 20.0% |
| !!! | ATATTGTTTCATTTTTGCTA+AGG | - | chr7_1:35787031-35787050 | Msa1017160:intron | 20.0% |
| !! | TAAAAAATTAAAGCCATTTC+TGG | - | chr7_1:35787081-35787100 | Msa1017160:CDS | 20.0% |
| !! | AAAAAATTAAAGCCATTTCT+GGG | - | chr7_1:35787082-35787101 | Msa1017160:CDS | 20.0% |
| !! | CCTGTAATTAAATATTAATG+GGG | - | chr7_1:35787467-35787486 | Msa1017160:intron | 20.0% |
| !!! | GATTTCTCTAAAAAGTTAAA+TGG | + | chr7_1:35787658-35787677 | None:intergenic | 20.0% |
| !! | AAGGTGTAAATATCTTTATA+TGG | - | chr7_1:35787691-35787710 | Msa1017160:intron | 20.0% |
| !! | ATATCTTTATATGGTATGTT+TGG | - | chr7_1:35787700-35787719 | Msa1017160:intron | 20.0% |
| !!! | CTCTTGTAATTTGTAATTTT+TGG | - | chr7_1:35788051-35788070 | Msa1017160:intron | 20.0% |
| !! | ATTAAAATTTCCACCAATAA+GGG | + | chr7_1:35788434-35788453 | None:intergenic | 20.0% |
| !! | TTTAATGTATTAACTCATAG+TGG | - | chr7_1:35788448-35788467 | Msa1017160:intron | 20.0% |
| !! | ATTGTGTAACTAAATTAGAT+TGG | - | chr7_1:35788562-35788581 | Msa1017160:intron | 20.0% |
| !! | AACTAAATTAGATTGGAATA+TGG | - | chr7_1:35788569-35788588 | Msa1017160:intron | 20.0% |
| !!! | TTTTACAAGACTCAATTTTA+CGG | - | chr7_1:35788801-35788820 | Msa1017160:five_prime_UTR | 20.0% |
| ! | ACCCTAATTAATATACGTTA+AGG | + | chr7_1:35785601-35785620 | None:intergenic | 25.0% |
| ! | TTATACAATCATGGTTATCA+TGG | + | chr7_1:35785784-35785803 | None:intergenic | 25.0% |
| ! | ATATACAACACAATACTGAT+AGG | + | chr7_1:35786160-35786179 | None:intergenic | 25.0% |
| ! | TGTGTTGTATATTTCTTTGT+AGG | - | chr7_1:35786168-35786187 | Msa1017160:intron | 25.0% |
| !!! | ATTTTTTTTCTAAGAATGCG+TGG | + | chr7_1:35786449-35786468 | None:intergenic | 25.0% |
| ! | GGAAAATGTATATTAATGCA+GGG | + | chr7_1:35786504-35786523 | None:intergenic | 25.0% |
| ! | AGGAAAATGTATATTAATGC+AGG | + | chr7_1:35786505-35786524 | None:intergenic | 25.0% |
| ! | GTTTACTTCAAATTTCAACA+AGG | + | chr7_1:35786525-35786544 | None:intergenic | 25.0% |
| ! | TTAGTATAATAAGAAGGCAA+TGG | + | chr7_1:35786591-35786610 | None:intergenic | 25.0% |
| ! | ACAGTGAAAATGAATTTAAG+AGG | - | chr7_1:35786669-35786688 | Msa1017160:CDS | 25.0% |
| ! | TGATATTCTGGTACATAATT+GGG | + | chr7_1:35786719-35786738 | None:intergenic | 25.0% |
| ! | ATGATATTCTGGTACATAAT+TGG | + | chr7_1:35786720-35786739 | None:intergenic | 25.0% |
| ! | AAAAATTAAAGCCATTTCTG+GGG | - | chr7_1:35787083-35787102 | Msa1017160:CDS | 25.0% |
| ! | TTAGTGTTTGTTTGATTATG+TGG | + | chr7_1:35787171-35787190 | None:intergenic | 25.0% |
| ! | AAACTCAAATTTCCATCTTT+AGG | + | chr7_1:35787306-35787325 | None:intergenic | 25.0% |
| ! | AGTGGATAATAATGTAGAAA+TGG | - | chr7_1:35787365-35787384 | Msa1017160:CDS | 25.0% |
| ! | CCCCATTAATATTTAATTAC+AGG | + | chr7_1:35787470-35787489 | None:intergenic | 25.0% |
| !!! | GAAATCCATGTTGATTTTTA+AGG | - | chr7_1:35787672-35787691 | Msa1017160:intron | 25.0% |
| ! | TTACACCTTAAAAATCAACA+TGG | + | chr7_1:35787680-35787699 | None:intergenic | 25.0% |
| ! | AAATTGTTATATCAGGCTTA+AGG | - | chr7_1:35787787-35787806 | Msa1017160:intron | 25.0% |
| ! | TCAATCATAGTTTCAAATTG+TGG | + | chr7_1:35787989-35788008 | None:intergenic | 25.0% |
| !!! | TATGATTGATAGTGTACTTT+TGG | - | chr7_1:35788000-35788019 | Msa1017160:intron | 25.0% |
| ! | AATTAAATTGAACCTGTTTC+AGG | - | chr7_1:35788298-35788317 | Msa1017160:intron | 25.0% |
| ! | CATTAAAATTTCCACCAATA+AGG | + | chr7_1:35788435-35788454 | None:intergenic | 25.0% |
| ! | CAAGAAATGAAAGAGTTAAA+AGG | - | chr7_1:35788717-35788736 | Msa1017160:CDS | 25.0% |
| !! | TTTGAGTTTAATTCTCTTCA+AGG | + | chr7_1:35788775-35788794 | None:intergenic | 25.0% |
| !! | TTTACAAGACTCAATTTTAC+GGG | - | chr7_1:35788802-35788821 | Msa1017160:five_prime_UTR | 25.0% |
| TGGTTATCATGGTGTAATTA+TGG | + | chr7_1:35785773-35785792 | None:intergenic | 30.0% | |
| ACCATGATTGTATAACCATA+CGG | - | chr7_1:35785789-35785808 | Msa1017160:intron | 30.0% | |
| GTGAATTAGAGTTCAAATCT+TGG | - | chr7_1:35785824-35785843 | Msa1017160:intron | 30.0% | |
| TTTAGTAAAGAACCACGAAT+AGG | + | chr7_1:35785926-35785945 | None:intergenic | 30.0% | |
| !!! | CACGAATAGGCTTTTTTTTA+AGG | + | chr7_1:35785972-35785991 | None:intergenic | 30.0% |
| CTTAAAAAAAAGCCTATTCG+TGG | - | chr7_1:35785970-35785989 | Msa1017160:intron | 30.0% | |
| ! | CTTTCAATCTTCAATTTTGG+TGG | - | chr7_1:35786018-35786037 | Msa1017160:intron | 30.0% |
| ACTAAACCTATACATTGAAG+CGG | + | chr7_1:35786051-35786070 | None:intergenic | 30.0% | |
| AAAAATCAACTAGGTGCTTT+AGG | + | chr7_1:35786087-35786106 | None:intergenic | 30.0% | |
| !!! | GTTATTTTTTTTAGGGAGGT+TGG | + | chr7_1:35786235-35786254 | None:intergenic | 30.0% |
| ATTTAAGAAATTTCGTGCGA+AGG | + | chr7_1:35786554-35786573 | None:intergenic | 30.0% | |
| TTTAAGAGGAAACGAAAGTT+TGG | - | chr7_1:35786683-35786702 | Msa1017160:CDS | 30.0% | |
| CATTGATCCTTCAAAAGTAA+AGG | - | chr7_1:35787004-35787023 | Msa1017160:intron | 30.0% | |
| !! | TATCTGACCTTTACTTTTGA+AGG | + | chr7_1:35787014-35787033 | None:intergenic | 30.0% |
| ! | AAAATTAAAGCCATTTCTGG+GGG | - | chr7_1:35787084-35787103 | Msa1017160:CDS | 30.0% |
| !! | AACTTGTTGTTTGTTACACA+TGG | - | chr7_1:35787611-35787630 | Msa1017160:intron | 30.0% |
| ! | TTGTGGCTTCTATATTTTCA+CGG | + | chr7_1:35787769-35787788 | None:intergenic | 30.0% |
| AAGCCACAAATTGTTATATC+AGG | - | chr7_1:35787780-35787799 | Msa1017160:intron | 30.0% | |
| AAGCCTGATATAACAATTTG+TGG | + | chr7_1:35787786-35787805 | None:intergenic | 30.0% | |
| ! | TCGCAATGAAAAGAATTTTG+AGG | - | chr7_1:35787885-35787904 | Msa1017160:intron | 30.0% |
| TAAAAAAACACATGAACACG+CGG | + | chr7_1:35787943-35787962 | None:intergenic | 30.0% | |
| ! | TCAAATTGTGGTTGTGTTTT+TGG | + | chr7_1:35787977-35787996 | None:intergenic | 30.0% |
| !!! | TAATTTTTGGCTTTCTTCTC+TGG | - | chr7_1:35788064-35788083 | Msa1017160:intron | 30.0% |
| TTCATTCAAAAAAGATGTCG+TGG | - | chr7_1:35788345-35788364 | Msa1017160:intron | 30.0% | |
| GTAGATAAAGTGCAATATTG+TGG | - | chr7_1:35788367-35788386 | Msa1017160:intron | 30.0% | |
| ! | GAAGCTTTATGAGGAAATAT+AGG | + | chr7_1:35788488-35788507 | None:intergenic | 30.0% |
| ATTGGAATATGGAATCAAAG+TGG | - | chr7_1:35788580-35788599 | Msa1017160:intron | 30.0% | |
| TTGGAATATGGAATCAAAGT+GGG | - | chr7_1:35788581-35788600 | Msa1017160:intron | 30.0% | |
| !! | TTTTGACAAACAATCGATTC+AGG | - | chr7_1:35788657-35788676 | Msa1017160:CDS | 30.0% |
| CTACTCTGAATAGCATGAAA+TGG | + | chr7_1:35785363-35785382 | None:intergenic | 35.0% | |
| ATTCAGAGTAGAAAAGTAGC+TGG | - | chr7_1:35785372-35785391 | Msa1017160:three_prime_UTR | 35.0% | |
| CCATGATTGTATAACCATAC+GGG | - | chr7_1:35785790-35785809 | Msa1017160:intron | 35.0% | |
| AACTCTAATTCACCGAGTTA+TGG | + | chr7_1:35785817-35785836 | None:intergenic | 35.0% | |
| ! | TAGAGCTTTTAACCTATTCG+TGG | - | chr7_1:35785911-35785930 | Msa1017160:intron | 35.0% |
| !! | CTTCGTTTTTAACCACGAAT+AGG | + | chr7_1:35785985-35786004 | None:intergenic | 35.0% |
| AATAGTCCGCTTCAATGTAT+AGG | - | chr7_1:35786042-35786061 | Msa1017160:intron | 35.0% | |
| CAACACAATACTGATAGGAT+AGG | + | chr7_1:35786155-35786174 | None:intergenic | 35.0% | |
| ACCAGAATATCATTGTGATG+AGG | - | chr7_1:35786727-35786746 | Msa1017160:CDS | 35.0% | |
| AATATCATTGTGATGAGGCA+TGG | - | chr7_1:35786732-35786751 | Msa1017160:CDS | 35.0% | |
| AGGTTCGAGCATTTCAAATA+GGG | - | chr7_1:35786835-35786854 | Msa1017160:intron | 35.0% | |
| ACTTTCACGAACATCGTTAA+CGG | + | chr7_1:35786964-35786983 | None:intergenic | 35.0% | |
| ! | AAATTAAAGCCATTTCTGGG+GGG | - | chr7_1:35787085-35787104 | Msa1017160:CDS | 35.0% |
| TGTAGAAATGGTCTATAGAG+AGG | - | chr7_1:35787377-35787396 | Msa1017160:intron | 35.0% | |
| ! | AAAACTGATTCTTCCCACTT+AGG | + | chr7_1:35787530-35787549 | None:intergenic | 35.0% |
| ! | AAGAATCAGTTTTGCAAGCT+AGG | - | chr7_1:35787537-35787556 | Msa1017160:intron | 35.0% |
| ! | AGAATCAGTTTTGCAAGCTA+GGG | - | chr7_1:35787538-35787557 | Msa1017160:intron | 35.0% |
| CAGTAGGATATTTATCTGCA+AGG | + | chr7_1:35787589-35787608 | None:intergenic | 35.0% | |
| ACAAACAACAAGTTCTCAGT+AGG | + | chr7_1:35787605-35787624 | None:intergenic | 35.0% | |
| !!! | TATGGCTACGTTTGTTTTAG+CGG | + | chr7_1:35787832-35787851 | None:intergenic | 35.0% |
| ! | AATTCTTTTCATTGCGACTC+TGG | + | chr7_1:35787882-35787901 | None:intergenic | 35.0% |
| TGCAATTTCGATGTCATTGT+GGG | + | chr7_1:35787913-35787932 | None:intergenic | 35.0% | |
| TTGCAATTTCGATGTCATTG+TGG | + | chr7_1:35787914-35787933 | None:intergenic | 35.0% | |
| CTCATACTAAATGCAAGAAC+AGG | + | chr7_1:35788272-35788291 | None:intergenic | 35.0% | |
| GAGTGATCTCTTTCGAAAAT+AGG | + | chr7_1:35788412-35788431 | None:intergenic | 35.0% | |
| TTAACTCATAGTGGTCAAAG+TGG | - | chr7_1:35788457-35788476 | Msa1017160:intron | 35.0% | |
| TAACTCATAGTGGTCAAAGT+GGG | - | chr7_1:35788458-35788477 | Msa1017160:intron | 35.0% | |
| ! | TATCACTCAGAAGCTTTATG+AGG | + | chr7_1:35788497-35788516 | None:intergenic | 35.0% |
| GGCTTTCGATCATTACATAC+AGG | - | chr7_1:35785393-35785412 | Msa1017160:three_prime_UTR | 40.0% | |
| CCCGTATGGTTATACAATCA+TGG | + | chr7_1:35785793-35785812 | None:intergenic | 40.0% | |
| TCTGGTACATAATTGGGTGT+TGG | + | chr7_1:35786713-35786732 | None:intergenic | 40.0% | |
| GCCTCATCACAATGATATTC+TGG | + | chr7_1:35786731-35786750 | None:intergenic | 40.0% | |
| TCGATAACTTTGTACCCTCA+TGG | - | chr7_1:35786763-35786782 | Msa1017160:CDS | 40.0% | |
| ! | CTATTTGAAATGCTCGAACC+TGG | + | chr7_1:35786836-35786855 | None:intergenic | 40.0% |
| CAGGTTCGAGCATTTCAAAT+AGG | - | chr7_1:35786834-35786853 | Msa1017160:intron | 40.0% | |
| ! | CAAAGTATCCGACAAAGTCT+TGG | - | chr7_1:35786858-35786877 | Msa1017160:intron | 40.0% |
| TTGGAAGACCAAGACTTTGT+CGG | + | chr7_1:35786869-35786888 | None:intergenic | 40.0% | |
| ! | GTCTTGGTCTTCCAATACAT+CGG | - | chr7_1:35786874-35786893 | Msa1017160:intron | 40.0% |
| GAGACAATTAGCCGATGTAT+TGG | + | chr7_1:35786888-35786907 | None:intergenic | 40.0% | |
| AGAGAGAGCAATAACGAGTT+CGG | + | chr7_1:35786940-35786959 | None:intergenic | 40.0% | |
| TTAACTAATCCCCCCAGAAA+TGG | + | chr7_1:35787097-35787116 | None:intergenic | 40.0% | |
| !! | TTCTGGGGGGATTAGTTAAT+TGG | - | chr7_1:35787098-35787117 | Msa1017160:CDS | 40.0% |
| TTCCTCATTTCGACAATTGC+AGG | - | chr7_1:35787218-35787237 | Msa1017160:CDS | 40.0% | |
| CTCAATGTTGCTCCTAAAGA+TGG | - | chr7_1:35787291-35787310 | Msa1017160:CDS | 40.0% | |
| ATAAACCTCAGCTACCTAAG+TGG | - | chr7_1:35787513-35787532 | Msa1017160:intron | 40.0% | |
| TAAACCTCAGCTACCTAAGT+GGG | - | chr7_1:35787514-35787533 | Msa1017160:intron | 40.0% | |
| GCAATTTCGATGTCATTGTG+GGG | + | chr7_1:35787912-35787931 | None:intergenic | 40.0% | |
| TTCTCTGGTAAACCTTGTGT+CGG | - | chr7_1:35788079-35788098 | Msa1017160:intron | 40.0% | |
| ! | ATTGAACCTGTTTCAGGTGA+AGG | - | chr7_1:35788304-35788323 | Msa1017160:intron | 40.0% |
| TCAATTCCTTCACCTGAAAC+AGG | + | chr7_1:35788313-35788332 | None:intergenic | 40.0% | |
| TTCAGGTGAAGGAATTGAAG+TGG | - | chr7_1:35788315-35788334 | Msa1017160:intron | 40.0% | |
| GAAAGAGATCACTCCCTTAT+TGG | - | chr7_1:35788418-35788437 | Msa1017160:intron | 40.0% | |
| AACTCATAGTGGTCAAAGTG+GGG | - | chr7_1:35788459-35788478 | Msa1017160:intron | 40.0% | |
| GAGCTCAAAGAAGAAGAGGT+TGG | + | chr7_1:35785243-35785262 | None:intergenic | 45.0% | |
| CAGAGAGCTCAAAGAAGAAG+AGG | + | chr7_1:35785247-35785266 | None:intergenic | 45.0% | |
| AACCATACGGGTCCATAACT+CGG | - | chr7_1:35785802-35785821 | Msa1017160:intron | 45.0% | |
| TCTGGATGCAACGGAGAAAT+GGG | + | chr7_1:35786911-35786930 | None:intergenic | 45.0% | |
| GACCTGCAATTGTCGAAATG+AGG | + | chr7_1:35787223-35787242 | None:intergenic | 45.0% | |
| TTGCAGGTCTCTCTTGAGTA+TGG | - | chr7_1:35787234-35787253 | Msa1017160:CDS | 45.0% | |
| TATTATCCACTGTCCCAGCT+GGG | + | chr7_1:35787356-35787375 | None:intergenic | 45.0% | |
| TTATTATCCACTGTCCCAGC+TGG | + | chr7_1:35787357-35787376 | None:intergenic | 45.0% | |
| !!! | GCTACGTTTGTTTTAGCGGT+AGG | + | chr7_1:35787828-35787847 | None:intergenic | 45.0% |
| AGAGATCACTCCCTTATTGG+TGG | - | chr7_1:35788421-35788440 | Msa1017160:intron | 45.0% | |
| !!! | TTCAATAATATTTTATATTT+AGG | - | chr7_1:35785467-35785486 | Msa1017160:three_prime_UTR | 5.0% |
| CTGGATGCAACGGAGAAATG+GGG | + | chr7_1:35786910-35786929 | None:intergenic | 50.0% | |
| GTCTGGATGCAACGGAGAAA+TGG | + | chr7_1:35786912-35786931 | None:intergenic | 50.0% | |
| TCTTCCCACTTAGGTAGCTG+AGG | + | chr7_1:35787521-35787540 | None:intergenic | 50.0% | |
| CAGGCTTAAGGTGTGTTGAG+TGG | - | chr7_1:35787799-35787818 | Msa1017160:intron | 50.0% | |
| CTGGTAAACCTTGTGTCGGA+AGG | - | chr7_1:35788083-35788102 | Msa1017160:intron | 50.0% | |
| ACGACTATCCTTCCGACACA+AGG | + | chr7_1:35788094-35788113 | None:intergenic | 50.0% | |
| GTGTCGGAAGGATAGTCGTT+TGG | - | chr7_1:35788095-35788114 | Msa1017160:intron | 50.0% | |
| CACCGAGTTATGGACCCGTA+TGG | + | chr7_1:35785807-35785826 | None:intergenic | 55.0% | |
| GCAGCAGTGGATGTCCATGA+GGG | + | chr7_1:35786780-35786799 | None:intergenic | 55.0% | |
| TGAAATGCTCGAACCTGGCC+CGG | + | chr7_1:35786831-35786850 | None:intergenic | 55.0% | |
| TAACGAGTTCGGCAGCAGTC+TGG | + | chr7_1:35786929-35786948 | None:intergenic | 55.0% | |
| CGCAGCAGTGGATGTCCATG+AGG | + | chr7_1:35786781-35786800 | None:intergenic | 60.0% | |
| CATGGACATCCACTGCTGCG+CGG | - | chr7_1:35786781-35786800 | Msa1017160:CDS | 60.0% | |
| TGGGTCAACGGAGGATCCCA+CGG | + | chr7_1:35786807-35786826 | None:intergenic | 60.0% | |
| GGATCCTCCGTTGACCCAAC+CGG | - | chr7_1:35786809-35786828 | Msa1017160:intron | 60.0% | |
| GATCCTCCGTTGACCCAACC+GGG | - | chr7_1:35786810-35786829 | Msa1017160:intron | 60.0% | |
| CGGCAGCAGTCTGGATGCAA+CGG | + | chr7_1:35786920-35786939 | None:intergenic | 60.0% | |
| TTGCAGCCATGCTCCCAGCT+GGG | - | chr7_1:35787340-35787359 | Msa1017160:CDS | 60.0% | |
| ACCTGGCCCGGTTGGGTCAA+CGG | + | chr7_1:35786819-35786838 | None:intergenic | 65.0% | |
| TGCTCGAACCTGGCCCGGTT+GGG | + | chr7_1:35786826-35786845 | None:intergenic | 65.0% | |
| ATGCTCGAACCTGGCCCGGT+TGG | + | chr7_1:35786827-35786846 | None:intergenic | 65.0% | |
| CTTGCAGCCATGCTCCCAGC+TGG | - | chr7_1:35787339-35787358 | Msa1017160:CDS | 65.0% | |
| CACTGTCCCAGCTGGGAGCA+TGG | + | chr7_1:35787349-35787368 | None:intergenic | 65.0% | |
| CATGCTCCCAGCTGGGACAG+TGG | - | chr7_1:35787347-35787366 | Msa1017160:CDS | 65.0% | |
| ATCCACTGCTGCGCGGCCGT+GGG | - | chr7_1:35786788-35786807 | Msa1017160:CDS | 70.0% | |
| TGGCCCGGTTGGGTCAACGG+AGG | + | chr7_1:35786816-35786835 | None:intergenic | 70.0% | |
| TCCGTTGACCCAACCGGGCC+AGG | - | chr7_1:35786815-35786834 | Msa1017160:intron | 70.0% | |
| CATCCACTGCTGCGCGGCCG+TGG | - | chr7_1:35786787-35786806 | Msa1017160:CDS | 75.0% | |
| ATCCCACGGCCGCGCAGCAG+TGG | + | chr7_1:35786793-35786812 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 35785215 | 35788844 | 35785215 | ID=Msa1017160;Name=Msa1017160 |
| chr7_1 | mRNA | 35785215 | 35788844 | 35785215 | ID=Msa1017160-mRNA-1;Parent=Msa1017160;Name=Msa1017160-mRNA-1;_AED=0.24;_eAED=0.24;_QI=106|1|1|1|0.75|0.6|5|343|298 |
| chr7_1 | exon | 35785215 | 35785739 | 35785215 | ID=Msa1017160-mRNA-1:exon:6764;Parent=Msa1017160-mRNA-1 |
| chr7_1 | exon | 35786427 | 35786535 | 35786427 | ID=Msa1017160-mRNA-1:exon:6763;Parent=Msa1017160-mRNA-1 |
| chr7_1 | exon | 35786661 | 35786819 | 35786661 | ID=Msa1017160-mRNA-1:exon:6762;Parent=Msa1017160-mRNA-1 |
| chr7_1 | exon | 35787034 | 35787386 | 35787034 | ID=Msa1017160-mRNA-1:exon:6761;Parent=Msa1017160-mRNA-1 |
| chr7_1 | exon | 35788645 | 35788844 | 35788645 | ID=Msa1017160-mRNA-1:exon:6760;Parent=Msa1017160-mRNA-1 |
| chr7_1 | five_prime_UTR | 35788739 | 35788844 | 35788739 | ID=Msa1017160-mRNA-1:five_prime_utr;Parent=Msa1017160-mRNA-1 |
| chr7_1 | CDS | 35788645 | 35788738 | 35788645 | ID=Msa1017160-mRNA-1:cds;Parent=Msa1017160-mRNA-1 |
| chr7_1 | CDS | 35787034 | 35787386 | 35787034 | ID=Msa1017160-mRNA-1:cds;Parent=Msa1017160-mRNA-1 |
| chr7_1 | CDS | 35786661 | 35786819 | 35786661 | ID=Msa1017160-mRNA-1:cds;Parent=Msa1017160-mRNA-1 |
| chr7_1 | CDS | 35786427 | 35786535 | 35786427 | ID=Msa1017160-mRNA-1:cds;Parent=Msa1017160-mRNA-1 |
| chr7_1 | CDS | 35785558 | 35785739 | 35785558 | ID=Msa1017160-mRNA-1:cds;Parent=Msa1017160-mRNA-1 |
| chr7_1 | three_prime_UTR | 35785215 | 35785557 | 35785215 | ID=Msa1017160-mRNA-1:three_prime_utr;Parent=Msa1017160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
