Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103370 | AES78933.2 | 97.917 | 192 | 4 | 0 | 2 | 193 | 5 | 196 | 5.99e-132 | 378 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103370 | G7KWY3 | 97.917 | 192 | 4 | 0 | 2 | 193 | 5 | 196 | 2.86e-132 | 378 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0661830 | Msa1103370 | 0.804807 | 1.808900e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103370 | MtrunA17_Chr7g0233921 | 97.917 | 192 | 4 | 0 | 2 | 193 | 84 | 275 | 7.13e-136 | 380 |
| Msa1103370 | MtrunA17_Chr3g0112711 | 47.953 | 171 | 82 | 3 | 24 | 192 | 4 | 169 | 5.73e-37 | 126 |
| Msa1103370 | MtrunA17_Chr4g0032241 | 42.222 | 180 | 90 | 2 | 26 | 193 | 10 | 187 | 1.29e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103370 | AT3G07510.3 | 75.635 | 197 | 43 | 1 | 2 | 193 | 3 | 199 | 1.05e-86 | 254 |
| Msa1103370 | AT3G07510.2 | 84.756 | 164 | 25 | 0 | 30 | 193 | 26 | 189 | 3.04e-86 | 252 |
| Msa1103370 | AT3G07510.1 | 84.756 | 164 | 25 | 0 | 30 | 193 | 26 | 189 | 3.04e-86 | 252 |
| Msa1103370 | AT2G01580.1 | 60.377 | 159 | 63 | 0 | 33 | 191 | 31 | 189 | 1.58e-57 | 179 |
| Msa1103370 | AT5G05950.1 | 46.821 | 173 | 85 | 4 | 27 | 192 | 2 | 174 | 3.74e-41 | 137 |
| Msa1103370 | AT3G46890.1 | 40.212 | 189 | 89 | 7 | 27 | 193 | 18 | 204 | 1.79e-24 | 95.5 |
Find 63 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGCTGGTTTAATTGCTTT+TGG | 0.189482 | 7_3:-39063651 | None:intergenic |
| ATCTGCTTTGGGATCTGTTA+TGG | 0.224028 | 7_3:+39064291 | Msa1103370:CDS |
| TCTGCTTTGGGATCTGTTAT+GGG | 0.234831 | 7_3:+39064292 | Msa1103370:CDS |
| GGGGATGTTGGGATCTGCTT+TGG | 0.256332 | 7_3:+39064279 | Msa1103370:CDS |
| TGCGTTGGCCTGGAGTTGTT+AGG | 0.291261 | 7_3:-39064060 | None:intergenic |
| GGGATGTTGGGATCTGCTTT+GGG | 0.300771 | 7_3:+39064280 | Msa1103370:CDS |
| TGCTCATGCTGTTGCTGTTA+TGG | 0.304958 | 7_3:+39064393 | Msa1103370:CDS |
| GTTATGTCGTTTCGTTGGTT+TGG | 0.312592 | 7_3:-39063926 | None:intergenic |
| TTCTCCAGGCTGCGTTGGCC+TGG | 0.319684 | 7_3:-39064070 | None:intergenic |
| GGTTGGGGATGTTGTCTTGC+TGG | 0.321001 | 7_3:+39064359 | Msa1103370:CDS |
| AAGAAGAAATAATTTGCTTA+GGG | 0.362685 | 7_3:-39063742 | None:intergenic |
| TAAGAAGAAATAATTTGCTT+AGG | 0.363802 | 7_3:-39063743 | None:intergenic |
| TTATGTCGTTTCGTTGGTTT+GGG | 0.367808 | 7_3:-39063925 | None:intergenic |
| AATGTTATTGAGATTAGGTT+GGG | 0.375138 | 7_3:+39064343 | Msa1103370:CDS |
| CTTACTCATCCATTGATTGA+TGG | 0.385165 | 7_3:-39063804 | None:intergenic |
| TGGTTTGGGTAGTAATCCTT+TGG | 0.409544 | 7_3:-39063911 | None:intergenic |
| CTTCTTTGCGACGTCGATCC+CGG | 0.428200 | 7_3:-39064110 | None:intergenic |
| TCATCTTCCCTTGTTGCTCA+AGG | 0.433862 | 7_3:+39064172 | Msa1103370:CDS |
| AATCGCTCCTCTTGCGACGC+CGG | 0.446433 | 7_3:+39064091 | Msa1103370:CDS |
| AACTCCAGGCCAACGCAGCC+TGG | 0.450154 | 7_3:+39064066 | Msa1103370:CDS |
| AATAATTTGCTTAGGGGAGA+AGG | 0.454260 | 7_3:-39063735 | None:intergenic |
| TTTGCTTAGGGGAGAAGGAT+AGG | 0.467243 | 7_3:-39063730 | None:intergenic |
| TTCTTGTTATGTCGTTTCGT+TGG | 0.471656 | 7_3:-39063931 | None:intergenic |
| TTGCTTAGGGGAGAAGGATA+GGG | 0.472257 | 7_3:-39063729 | None:intergenic |
| GCGTTGGCCTGGAGTTGTTA+GGG | 0.486469 | 7_3:-39064059 | None:intergenic |
| GAATGTTATTGAGATTAGGT+TGG | 0.491944 | 7_3:+39064342 | Msa1103370:CDS |
| TGGTGAATGTTATTGAGATT+AGG | 0.494523 | 7_3:+39064338 | Msa1103370:CDS |
| GAATACGGCGATTGTGAAGA+GGG | 0.505149 | 7_3:-39064026 | None:intergenic |
| TATGAAGATGAAAGTTATGG+AGG | 0.510178 | 7_3:-39063768 | None:intergenic |
| GGCCTATCCCTAACAACTCC+AGG | 0.512694 | 7_3:+39064052 | Msa1103370:CDS |
| TCGTGCACATATTAATCTGA+AGG | 0.516683 | 7_3:+39064246 | Msa1103370:CDS |
| CGCAAGAGGAGCGATTCTCC+AGG | 0.526259 | 7_3:-39064084 | None:intergenic |
| TAGGGATAGGCCGACGAATA+CGG | 0.526494 | 7_3:-39064041 | None:intergenic |
| TATGAAATGGATTTGTGAGT+TGG | 0.527520 | 7_3:+39064523 | Msa1103370:three_prime_UTR |
| GGATGTGATTGCTTTGTAGC+TGG | 0.534982 | 7_3:-39063666 | None:intergenic |
| CTGCTTTGGGATCTGTTATG+GGG | 0.538722 | 7_3:+39064293 | Msa1103370:CDS |
| TCTTCTCAACAGTAAGGATG+TGG | 0.538914 | 7_3:+39064213 | Msa1103370:CDS |
| GGGTATGAAGATGAAAGTTA+TGG | 0.541360 | 7_3:-39063771 | None:intergenic |
| CTCATCCATTGATTGATGGA+GGG | 0.545376 | 7_3:-39063800 | None:intergenic |
| AGCGATTCTCCAGGCTGCGT+TGG | 0.549775 | 7_3:-39064075 | None:intergenic |
| TCATCCATTGATTGATGGAG+GGG | 0.552778 | 7_3:-39063799 | None:intergenic |
| CGAATACGGCGATTGTGAAG+AGG | 0.553642 | 7_3:-39064027 | None:intergenic |
| GTCGATCCCGGCGTCGCAAG+AGG | 0.558642 | 7_3:-39064098 | None:intergenic |
| ACTCATCCATTGATTGATGG+AGG | 0.558925 | 7_3:-39063801 | None:intergenic |
| TTTAAGACCTTGAGCAACAA+GGG | 0.559838 | 7_3:-39064179 | None:intergenic |
| ACTCAATCTTCTCAACAGTA+AGG | 0.560977 | 7_3:+39064207 | Msa1103370:CDS |
| GGCCTGGAGTTGTTAGGGAT+AGG | 0.581475 | 7_3:-39064054 | None:intergenic |
| CACAGATACATGTCAGACAC+TGG | 0.588143 | 7_3:-39064624 | None:intergenic |
| TTCACAATCGCCGTATTCGT+CGG | 0.588808 | 7_3:+39064031 | Msa1103370:CDS |
| AGATGAGAGGAAGAAGCTGA+AGG | 0.590413 | 7_3:-39064155 | None:intergenic |
| GTCCACGTCACCGCATTAGA+CGG | 0.592859 | 7_3:+39063986 | Msa1103370:CDS |
| GTTTAAGACCTTGAGCAACA+AGG | 0.593709 | 7_3:-39064180 | None:intergenic |
| ATGAAGATGAAAGTTATGGA+GGG | 0.595009 | 7_3:-39063767 | None:intergenic |
| ATGTTATTGAGATTAGGTTG+GGG | 0.603102 | 7_3:+39064344 | Msa1103370:CDS |
| AGAAGAAATAATTTGCTTAG+GGG | 0.611635 | 7_3:-39063741 | None:intergenic |
| CATCCATTGATTGATGGAGG+GGG | 0.614603 | 7_3:-39063798 | None:intergenic |
| AAAGTTTGAAAAGATACGCA+AGG | 0.615667 | 7_3:-39063618 | None:intergenic |
| GTCCGTCTAATGCGGTGACG+TGG | 0.618663 | 7_3:-39063988 | None:intergenic |
| GTTACATTACAGATCTCCAA+AGG | 0.626791 | 7_3:+39063895 | Msa1103370:intron |
| GAGCAACAAGGGAAGATGAG+AGG | 0.632485 | 7_3:-39064168 | None:intergenic |
| GTTGACTAGTCCGTCTAATG+CGG | 0.635569 | 7_3:-39063996 | None:intergenic |
| GACGCTTGTTGTTGATGAGG+AGG | 0.639639 | 7_3:-39063966 | None:intergenic |
| GTGGACGCTTGTTGTTGATG+AGG | 0.654034 | 7_3:-39063969 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTAAATGTTAAATGTA+AGG | - | chr7_3:39063853-39063872 | None:intergenic | 10.0% |
| !! | TAAATTAAATGTTAAATGTA+AGG | - | chr7_3:39063853-39063872 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTGATATATGAAA+TGG | + | chr7_3:39064510-39064529 | Msa1103370:three_prime_UTR | 15.0% |
| !!! | ATGTTTTTTGATATATGAAA+TGG | + | chr7_3:39064510-39064529 | Msa1103370:three_prime_UTR | 15.0% |
| !!! | AAGAAGAAATAATTTGCTTA+GGG | - | chr7_3:39063745-39063764 | None:intergenic | 20.0% |
| !!! | TAAGAAGAAATAATTTGCTT+AGG | - | chr7_3:39063746-39063765 | None:intergenic | 20.0% |
| !! | TTAAATGTTAAATGTAAGGT+TGG | - | chr7_3:39063849-39063868 | None:intergenic | 20.0% |
| !!! | TTTTTGTGATTTTTTAGTGA+TGG | + | chr7_3:39064560-39064579 | Msa1103370:three_prime_UTR | 20.0% |
| !!! | AAGAAGAAATAATTTGCTTA+GGG | - | chr7_3:39063745-39063764 | None:intergenic | 20.0% |
| !!! | TAAGAAGAAATAATTTGCTT+AGG | - | chr7_3:39063746-39063765 | None:intergenic | 20.0% |
| !! | TTAAATGTTAAATGTAAGGT+TGG | - | chr7_3:39063849-39063868 | None:intergenic | 20.0% |
| !!! | TTTTTGTGATTTTTTAGTGA+TGG | + | chr7_3:39064560-39064579 | Msa1103370:three_prime_UTR | 20.0% |
| !!! | TGCTTTATTTTTGACTGAAA+AGG | - | chr7_3:39063690-39063709 | None:intergenic | 25.0% |
| !!! | AGAAGAAATAATTTGCTTAG+GGG | - | chr7_3:39063744-39063763 | None:intergenic | 25.0% |
| ! | AATGTTATTGAGATTAGGTT+GGG | + | chr7_3:39064343-39064362 | Msa1103370:CDS | 25.0% |
| !! | ATGCTTTTACTCATTAGATT+TGG | + | chr7_3:39064464-39064483 | Msa1103370:exon | 25.0% |
| !!! | TGCTTTATTTTTGACTGAAA+AGG | - | chr7_3:39063690-39063709 | None:intergenic | 25.0% |
| !!! | AGAAGAAATAATTTGCTTAG+GGG | - | chr7_3:39063744-39063763 | None:intergenic | 25.0% |
| ! | AATGTTATTGAGATTAGGTT+GGG | + | chr7_3:39064343-39064362 | Msa1103370:CDS | 25.0% |
| !! | ATGCTTTTACTCATTAGATT+TGG | + | chr7_3:39064464-39064483 | Msa1103370:exon | 25.0% |
| AAAGTTTGAAAAGATACGCA+AGG | - | chr7_3:39063621-39063640 | None:intergenic | 30.0% | |
| !! | TAGCTGGTTTAATTGCTTTT+GGG | - | chr7_3:39063653-39063672 | None:intergenic | 30.0% |
| ATGAAGATGAAAGTTATGGA+GGG | - | chr7_3:39063770-39063789 | None:intergenic | 30.0% | |
| TATGAAGATGAAAGTTATGG+AGG | - | chr7_3:39063771-39063790 | None:intergenic | 30.0% | |
| !!! | TTAATCTGAAGGTTTTGAGA+TGG | + | chr7_3:39064257-39064276 | Msa1103370:CDS | 30.0% |
| !!! | TAATCTGAAGGTTTTGAGAT+GGG | + | chr7_3:39064258-39064277 | Msa1103370:CDS | 30.0% |
| !!! | TTTGTTTTTGATGCTTTCGA+TGG | + | chr7_3:39064318-39064337 | Msa1103370:CDS | 30.0% |
| TGGTGAATGTTATTGAGATT+AGG | + | chr7_3:39064338-39064357 | Msa1103370:CDS | 30.0% | |
| GAATGTTATTGAGATTAGGT+TGG | + | chr7_3:39064342-39064361 | Msa1103370:CDS | 30.0% | |
| ! | ATGTTATTGAGATTAGGTTG+GGG | + | chr7_3:39064344-39064363 | Msa1103370:CDS | 30.0% |
| ! | TATGAAATGGATTTGTGAGT+TGG | + | chr7_3:39064523-39064542 | Msa1103370:three_prime_UTR | 30.0% |
| AAAGTTTGAAAAGATACGCA+AGG | - | chr7_3:39063621-39063640 | None:intergenic | 30.0% | |
| !! | TAGCTGGTTTAATTGCTTTT+GGG | - | chr7_3:39063653-39063672 | None:intergenic | 30.0% |
| ATGAAGATGAAAGTTATGGA+GGG | - | chr7_3:39063770-39063789 | None:intergenic | 30.0% | |
| TATGAAGATGAAAGTTATGG+AGG | - | chr7_3:39063771-39063790 | None:intergenic | 30.0% | |
| !!! | TTAATCTGAAGGTTTTGAGA+TGG | + | chr7_3:39064257-39064276 | Msa1103370:CDS | 30.0% |
| !!! | TAATCTGAAGGTTTTGAGAT+GGG | + | chr7_3:39064258-39064277 | Msa1103370:CDS | 30.0% |
| !!! | TTTGTTTTTGATGCTTTCGA+TGG | + | chr7_3:39064318-39064337 | Msa1103370:CDS | 30.0% |
| TGGTGAATGTTATTGAGATT+AGG | + | chr7_3:39064338-39064357 | Msa1103370:CDS | 30.0% | |
| GAATGTTATTGAGATTAGGT+TGG | + | chr7_3:39064342-39064361 | Msa1103370:CDS | 30.0% | |
| ! | ATGTTATTGAGATTAGGTTG+GGG | + | chr7_3:39064344-39064363 | Msa1103370:CDS | 30.0% |
| ! | TATGAAATGGATTTGTGAGT+TGG | + | chr7_3:39064523-39064542 | Msa1103370:three_prime_UTR | 30.0% |
| !! | GTAGCTGGTTTAATTGCTTT+TGG | - | chr7_3:39063654-39063673 | None:intergenic | 35.0% |
| !! | AATAATTTGCTTAGGGGAGA+AGG | - | chr7_3:39063738-39063757 | None:intergenic | 35.0% |
| GGGTATGAAGATGAAAGTTA+TGG | - | chr7_3:39063774-39063793 | None:intergenic | 35.0% | |
| ! | CTTACTCATCCATTGATTGA+TGG | - | chr7_3:39063807-39063826 | None:intergenic | 35.0% |
| GTTACATTACAGATCTCCAA+AGG | + | chr7_3:39063895-39063914 | Msa1103370:intron | 35.0% | |
| !! | TTATGTCGTTTCGTTGGTTT+GGG | - | chr7_3:39063928-39063947 | None:intergenic | 35.0% |
| ! | TTCTTGTTATGTCGTTTCGT+TGG | - | chr7_3:39063934-39063953 | None:intergenic | 35.0% |
| ! | TTTAAGACCTTGAGCAACAA+GGG | - | chr7_3:39064182-39064201 | None:intergenic | 35.0% |
| ACTCAATCTTCTCAACAGTA+AGG | + | chr7_3:39064207-39064226 | Msa1103370:CDS | 35.0% | |
| TCGTGCACATATTAATCTGA+AGG | + | chr7_3:39064246-39064265 | Msa1103370:CDS | 35.0% | |
| !!! | AATCTGAAGGTTTTGAGATG+GGG | + | chr7_3:39064259-39064278 | Msa1103370:CDS | 35.0% |
| !! | GTAGCTGGTTTAATTGCTTT+TGG | - | chr7_3:39063654-39063673 | None:intergenic | 35.0% |
| !! | AATAATTTGCTTAGGGGAGA+AGG | - | chr7_3:39063738-39063757 | None:intergenic | 35.0% |
| GGGTATGAAGATGAAAGTTA+TGG | - | chr7_3:39063774-39063793 | None:intergenic | 35.0% | |
| ! | CTTACTCATCCATTGATTGA+TGG | - | chr7_3:39063807-39063826 | None:intergenic | 35.0% |
| GTTACATTACAGATCTCCAA+AGG | + | chr7_3:39063895-39063914 | Msa1103370:intron | 35.0% | |
| !! | TTATGTCGTTTCGTTGGTTT+GGG | - | chr7_3:39063928-39063947 | None:intergenic | 35.0% |
| ! | TTCTTGTTATGTCGTTTCGT+TGG | - | chr7_3:39063934-39063953 | None:intergenic | 35.0% |
| ! | TTTAAGACCTTGAGCAACAA+GGG | - | chr7_3:39064182-39064201 | None:intergenic | 35.0% |
| ACTCAATCTTCTCAACAGTA+AGG | + | chr7_3:39064207-39064226 | Msa1103370:CDS | 35.0% | |
| TCGTGCACATATTAATCTGA+AGG | + | chr7_3:39064246-39064265 | Msa1103370:CDS | 35.0% | |
| !!! | AATCTGAAGGTTTTGAGATG+GGG | + | chr7_3:39064259-39064278 | Msa1103370:CDS | 35.0% |
| ! | TCATCCATTGATTGATGGAG+GGG | - | chr7_3:39063802-39063821 | None:intergenic | 40.0% |
| ! | CTCATCCATTGATTGATGGA+GGG | - | chr7_3:39063803-39063822 | None:intergenic | 40.0% |
| ! | ACTCATCCATTGATTGATGG+AGG | - | chr7_3:39063804-39063823 | None:intergenic | 40.0% |
| ! | TGGTTTGGGTAGTAATCCTT+TGG | - | chr7_3:39063914-39063933 | None:intergenic | 40.0% |
| ! | GTTATGTCGTTTCGTTGGTT+TGG | - | chr7_3:39063929-39063948 | None:intergenic | 40.0% |
| ! | GTTTAAGACCTTGAGCAACA+AGG | - | chr7_3:39064183-39064202 | None:intergenic | 40.0% |
| TCTTCTCAACAGTAAGGATG+TGG | + | chr7_3:39064213-39064232 | Msa1103370:CDS | 40.0% | |
| !!! | ATCTGAAGGTTTTGAGATGG+GGG | + | chr7_3:39064260-39064279 | Msa1103370:CDS | 40.0% |
| !! | ATCTGCTTTGGGATCTGTTA+TGG | + | chr7_3:39064291-39064310 | Msa1103370:CDS | 40.0% |
| !! | TCTGCTTTGGGATCTGTTAT+GGG | + | chr7_3:39064292-39064311 | Msa1103370:CDS | 40.0% |
| ! | TCATCCATTGATTGATGGAG+GGG | - | chr7_3:39063802-39063821 | None:intergenic | 40.0% |
| ! | CTCATCCATTGATTGATGGA+GGG | - | chr7_3:39063803-39063822 | None:intergenic | 40.0% |
| ! | ACTCATCCATTGATTGATGG+AGG | - | chr7_3:39063804-39063823 | None:intergenic | 40.0% |
| ! | TGGTTTGGGTAGTAATCCTT+TGG | - | chr7_3:39063914-39063933 | None:intergenic | 40.0% |
| ! | GTTATGTCGTTTCGTTGGTT+TGG | - | chr7_3:39063929-39063948 | None:intergenic | 40.0% |
| ! | GTTTAAGACCTTGAGCAACA+AGG | - | chr7_3:39064183-39064202 | None:intergenic | 40.0% |
| TCTTCTCAACAGTAAGGATG+TGG | + | chr7_3:39064213-39064232 | Msa1103370:CDS | 40.0% | |
| !!! | ATCTGAAGGTTTTGAGATGG+GGG | + | chr7_3:39064260-39064279 | Msa1103370:CDS | 40.0% |
| !! | ATCTGCTTTGGGATCTGTTA+TGG | + | chr7_3:39064291-39064310 | Msa1103370:CDS | 40.0% |
| !! | TCTGCTTTGGGATCTGTTAT+GGG | + | chr7_3:39064292-39064311 | Msa1103370:CDS | 40.0% |
| GGATGTGATTGCTTTGTAGC+TGG | - | chr7_3:39063669-39063688 | None:intergenic | 45.0% | |
| TTGCTTAGGGGAGAAGGATA+GGG | - | chr7_3:39063732-39063751 | None:intergenic | 45.0% | |
| TTTGCTTAGGGGAGAAGGAT+AGG | - | chr7_3:39063733-39063752 | None:intergenic | 45.0% | |
| ! | CATCCATTGATTGATGGAGG+GGG | - | chr7_3:39063801-39063820 | None:intergenic | 45.0% |
| ! | GTTGACTAGTCCGTCTAATG+CGG | - | chr7_3:39063999-39064018 | None:intergenic | 45.0% |
| GAATACGGCGATTGTGAAGA+GGG | - | chr7_3:39064029-39064048 | None:intergenic | 45.0% | |
| TTCACAATCGCCGTATTCGT+CGG | + | chr7_3:39064031-39064050 | Msa1103370:CDS | 45.0% | |
| AGATGAGAGGAAGAAGCTGA+AGG | - | chr7_3:39064158-39064177 | None:intergenic | 45.0% | |
| TCATCTTCCCTTGTTGCTCA+AGG | + | chr7_3:39064172-39064191 | Msa1103370:CDS | 45.0% | |
| !!! | GTTTTGAGATGGGGGATGTT+GGG | + | chr7_3:39064268-39064287 | Msa1103370:CDS | 45.0% |
| !! | CTGCTTTGGGATCTGTTATG+GGG | + | chr7_3:39064293-39064312 | Msa1103370:CDS | 45.0% |
| ! | TGCTCATGCTGTTGCTGTTA+TGG | + | chr7_3:39064393-39064412 | Msa1103370:CDS | 45.0% |
| GGATGTGATTGCTTTGTAGC+TGG | - | chr7_3:39063669-39063688 | None:intergenic | 45.0% | |
| TTGCTTAGGGGAGAAGGATA+GGG | - | chr7_3:39063732-39063751 | None:intergenic | 45.0% | |
| TTTGCTTAGGGGAGAAGGAT+AGG | - | chr7_3:39063733-39063752 | None:intergenic | 45.0% | |
| ! | CATCCATTGATTGATGGAGG+GGG | - | chr7_3:39063801-39063820 | None:intergenic | 45.0% |
| ! | GTTGACTAGTCCGTCTAATG+CGG | - | chr7_3:39063999-39064018 | None:intergenic | 45.0% |
| GAATACGGCGATTGTGAAGA+GGG | - | chr7_3:39064029-39064048 | None:intergenic | 45.0% | |
| TTCACAATCGCCGTATTCGT+CGG | + | chr7_3:39064031-39064050 | Msa1103370:CDS | 45.0% | |
| AGATGAGAGGAAGAAGCTGA+AGG | - | chr7_3:39064158-39064177 | None:intergenic | 45.0% | |
| TCATCTTCCCTTGTTGCTCA+AGG | + | chr7_3:39064172-39064191 | Msa1103370:CDS | 45.0% | |
| !!! | GTTTTGAGATGGGGGATGTT+GGG | + | chr7_3:39064268-39064287 | Msa1103370:CDS | 45.0% |
| !! | CTGCTTTGGGATCTGTTATG+GGG | + | chr7_3:39064293-39064312 | Msa1103370:CDS | 45.0% |
| ! | TGCTCATGCTGTTGCTGTTA+TGG | + | chr7_3:39064393-39064412 | Msa1103370:CDS | 45.0% |
| ATTGATTGATGGAGGGGGAG+GGG | - | chr7_3:39063796-39063815 | None:intergenic | 50.0% | |
| ! | CATTGATTGATGGAGGGGGA+GGG | - | chr7_3:39063797-39063816 | None:intergenic | 50.0% |
| !! | GACGCTTGTTGTTGATGAGG+AGG | - | chr7_3:39063969-39063988 | None:intergenic | 50.0% |
| !! | GTGGACGCTTGTTGTTGATG+AGG | - | chr7_3:39063972-39063991 | None:intergenic | 50.0% |
| CGAATACGGCGATTGTGAAG+AGG | - | chr7_3:39064030-39064049 | None:intergenic | 50.0% | |
| TAGGGATAGGCCGACGAATA+CGG | - | chr7_3:39064044-39064063 | None:intergenic | 50.0% | |
| GAGCAACAAGGGAAGATGAG+AGG | - | chr7_3:39064171-39064190 | None:intergenic | 50.0% | |
| !!! | GGTTTTGAGATGGGGGATGT+TGG | + | chr7_3:39064267-39064286 | Msa1103370:CDS | 50.0% |
| GGGATGTTGGGATCTGCTTT+GGG | + | chr7_3:39064280-39064299 | Msa1103370:CDS | 50.0% | |
| ATTGATTGATGGAGGGGGAG+GGG | - | chr7_3:39063796-39063815 | None:intergenic | 50.0% | |
| ! | CATTGATTGATGGAGGGGGA+GGG | - | chr7_3:39063797-39063816 | None:intergenic | 50.0% |
| !! | GACGCTTGTTGTTGATGAGG+AGG | - | chr7_3:39063969-39063988 | None:intergenic | 50.0% |
| !! | GTGGACGCTTGTTGTTGATG+AGG | - | chr7_3:39063972-39063991 | None:intergenic | 50.0% |
| CGAATACGGCGATTGTGAAG+AGG | - | chr7_3:39064030-39064049 | None:intergenic | 50.0% | |
| TAGGGATAGGCCGACGAATA+CGG | - | chr7_3:39064044-39064063 | None:intergenic | 50.0% | |
| GAGCAACAAGGGAAGATGAG+AGG | - | chr7_3:39064171-39064190 | None:intergenic | 50.0% | |
| !!! | GGTTTTGAGATGGGGGATGT+TGG | + | chr7_3:39064267-39064286 | Msa1103370:CDS | 50.0% |
| GGGATGTTGGGATCTGCTTT+GGG | + | chr7_3:39064280-39064299 | Msa1103370:CDS | 50.0% | |
| TTGATTGATGGAGGGGGAGG+GGG | - | chr7_3:39063795-39063814 | None:intergenic | 55.0% | |
| ! | CCATTGATTGATGGAGGGGG+AGG | - | chr7_3:39063798-39063817 | None:intergenic | 55.0% |
| CCTCCCCCTCCATCAATCAA+TGG | + | chr7_3:39063795-39063814 | Msa1103370:exon | 55.0% | |
| GTCCACGTCACCGCATTAGA+CGG | + | chr7_3:39063986-39064005 | Msa1103370:CDS | 55.0% | |
| GGCCTATCCCTAACAACTCC+AGG | + | chr7_3:39064052-39064071 | Msa1103370:CDS | 55.0% | |
| GGCCTGGAGTTGTTAGGGAT+AGG | - | chr7_3:39064057-39064076 | None:intergenic | 55.0% | |
| ! | GCGTTGGCCTGGAGTTGTTA+GGG | - | chr7_3:39064062-39064081 | None:intergenic | 55.0% |
| ! | TGCGTTGGCCTGGAGTTGTT+AGG | - | chr7_3:39064063-39064082 | None:intergenic | 55.0% |
| CTTCTTTGCGACGTCGATCC+CGG | - | chr7_3:39064113-39064132 | None:intergenic | 55.0% | |
| GGGGATGTTGGGATCTGCTT+TGG | + | chr7_3:39064279-39064298 | Msa1103370:CDS | 55.0% | |
| GGTTGGGGATGTTGTCTTGC+TGG | + | chr7_3:39064359-39064378 | Msa1103370:CDS | 55.0% | |
| TTGATTGATGGAGGGGGAGG+GGG | - | chr7_3:39063795-39063814 | None:intergenic | 55.0% | |
| ! | CCATTGATTGATGGAGGGGG+AGG | - | chr7_3:39063798-39063817 | None:intergenic | 55.0% |
| CCTCCCCCTCCATCAATCAA+TGG | + | chr7_3:39063795-39063814 | Msa1103370:exon | 55.0% | |
| GTCCACGTCACCGCATTAGA+CGG | + | chr7_3:39063986-39064005 | Msa1103370:CDS | 55.0% | |
| GGCCTATCCCTAACAACTCC+AGG | + | chr7_3:39064052-39064071 | Msa1103370:CDS | 55.0% | |
| GGCCTGGAGTTGTTAGGGAT+AGG | - | chr7_3:39064057-39064076 | None:intergenic | 55.0% | |
| ! | GCGTTGGCCTGGAGTTGTTA+GGG | - | chr7_3:39064062-39064081 | None:intergenic | 55.0% |
| ! | TGCGTTGGCCTGGAGTTGTT+AGG | - | chr7_3:39064063-39064082 | None:intergenic | 55.0% |
| CTTCTTTGCGACGTCGATCC+CGG | - | chr7_3:39064113-39064132 | None:intergenic | 55.0% | |
| GGGGATGTTGGGATCTGCTT+TGG | + | chr7_3:39064279-39064298 | Msa1103370:CDS | 55.0% | |
| GGTTGGGGATGTTGTCTTGC+TGG | + | chr7_3:39064359-39064378 | Msa1103370:CDS | 55.0% | |
| TGATTGATGGAGGGGGAGGG+GGG | - | chr7_3:39063794-39063813 | None:intergenic | 60.0% | |
| GTCCGTCTAATGCGGTGACG+TGG | - | chr7_3:39063991-39064010 | None:intergenic | 60.0% | |
| AGCGATTCTCCAGGCTGCGT+TGG | - | chr7_3:39064078-39064097 | None:intergenic | 60.0% | |
| CGCAAGAGGAGCGATTCTCC+AGG | - | chr7_3:39064087-39064106 | None:intergenic | 60.0% | |
| AATCGCTCCTCTTGCGACGC+CGG | + | chr7_3:39064091-39064110 | Msa1103370:CDS | 60.0% | |
| TGATTGATGGAGGGGGAGGG+GGG | - | chr7_3:39063794-39063813 | None:intergenic | 60.0% | |
| GTCCGTCTAATGCGGTGACG+TGG | - | chr7_3:39063991-39064010 | None:intergenic | 60.0% | |
| AGCGATTCTCCAGGCTGCGT+TGG | - | chr7_3:39064078-39064097 | None:intergenic | 60.0% | |
| CGCAAGAGGAGCGATTCTCC+AGG | - | chr7_3:39064087-39064106 | None:intergenic | 60.0% | |
| AATCGCTCCTCTTGCGACGC+CGG | + | chr7_3:39064091-39064110 | Msa1103370:CDS | 60.0% | |
| AACTCCAGGCCAACGCAGCC+TGG | + | chr7_3:39064066-39064085 | Msa1103370:CDS | 65.0% | |
| ! | TTCTCCAGGCTGCGTTGGCC+TGG | - | chr7_3:39064073-39064092 | None:intergenic | 65.0% |
| ATCGCTCCTCTTGCGACGCC+GGG | + | chr7_3:39064092-39064111 | Msa1103370:CDS | 65.0% | |
| AACTCCAGGCCAACGCAGCC+TGG | + | chr7_3:39064066-39064085 | Msa1103370:CDS | 65.0% | |
| ! | TTCTCCAGGCTGCGTTGGCC+TGG | - | chr7_3:39064073-39064092 | None:intergenic | 65.0% |
| ATCGCTCCTCTTGCGACGCC+GGG | + | chr7_3:39064092-39064111 | Msa1103370:CDS | 65.0% | |
| GTCGATCCCGGCGTCGCAAG+AGG | - | chr7_3:39064101-39064120 | None:intergenic | 70.0% | |
| GTCGATCCCGGCGTCGCAAG+AGG | - | chr7_3:39064101-39064120 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 39063616 | 39064633 | 39063616 | ID=Msa1103370;Name=Msa1103370 |
| chr7_3 | mRNA | 39063616 | 39064633 | 39063616 | ID=Msa1103370-mRNA-1;Parent=Msa1103370;Name=Msa1103370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=198|1|1|1|1|1|2|153|193 |
| chr7_3 | exon | 39063616 | 39063821 | 39063616 | ID=Msa1103370-mRNA-1:exon:7902;Parent=Msa1103370-mRNA-1 |
| chr7_3 | exon | 39063907 | 39064633 | 39063907 | ID=Msa1103370-mRNA-1:exon:7903;Parent=Msa1103370-mRNA-1 |
| chr7_3 | five_prime_UTR | 39063616 | 39063813 | 39063616 | ID=Msa1103370-mRNA-1:five_prime_utr;Parent=Msa1103370-mRNA-1 |
| chr7_3 | CDS | 39063814 | 39063821 | 39063814 | ID=Msa1103370-mRNA-1:cds;Parent=Msa1103370-mRNA-1 |
| chr7_3 | CDS | 39063907 | 39064480 | 39063907 | ID=Msa1103370-mRNA-1:cds;Parent=Msa1103370-mRNA-1 |
| chr7_3 | three_prime_UTR | 39064481 | 39064633 | 39064481 | ID=Msa1103370-mRNA-1:three_prime_utr;Parent=Msa1103370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
