AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0661830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661830 MtrunA17_Chr4g0035001 84.337 83 13 0 1 83 1 83 2.11e-48 153
Msa0661830 MtrunA17_Chr4g0035051 82.927 82 14 0 2 83 4 85 1.01e-47 150
Msa0661830 MtrunA17_Chr4g0035031 80.723 83 16 0 2 84 4 86 6.80e-45 145
Msa0661830 MtrunA17_Chr2g0278661 60.241 83 33 0 5 87 6 88 1.06e-32 115
Msa0661830 MtrunA17_Chr4g0050781 59.036 83 34 0 3 85 4 86 7.20e-32 112
Msa0661830 MtrunA17_Chr3g0121631 53.165 79 36 1 7 85 37 114 7.11e-25 92.8
Msa0661830 MtrunA17_Chr3g0116631 53.571 84 39 0 3 86 203 286 3.33e-24 94.7
Msa0661830 MtrunA17_Chr3g0116631 41.975 81 47 0 7 87 110 190 1.69e-13 65.9
Msa0661830 MtrunA17_Chr4g0061451 48.101 79 41 0 7 85 43 121 1.54e-23 92.4
Msa0661830 MtrunA17_Chr1g0210241 49.383 81 41 0 5 85 6 86 4.73e-23 91.3
Msa0661830 MtrunA17_Chr3g0086861 46.835 79 42 0 7 85 45 123 1.27e-22 92.0
Msa0661830 MtrunA17_Chr3g0119311 46.250 80 43 0 7 86 37 116 5.06e-22 85.1
Msa0661830 MtrunA17_Chr4g0058151 51.852 81 39 0 6 86 216 296 5.35e-22 89.0
Msa0661830 MtrunA17_Chr4g0058151 38.235 102 63 0 5 106 121 222 7.21e-17 75.1
Msa0661830 MtrunA17_Chr1g0181111 55.000 80 36 0 7 86 197 276 6.22e-22 88.6
Msa0661830 MtrunA17_Chr1g0181111 35.878 131 77 2 7 137 85 208 8.76e-12 60.8
Msa0661830 MtrunA17_Chr7g0219021 45.263 95 47 1 7 96 41 135 5.30e-20 82.8
Msa0661830 MtrunA17_Chr7g0263001 49.367 79 40 0 7 85 36 114 8.38e-20 79.7
Msa0661830 MtrunA17_Chr7g0266751 43.210 81 46 0 4 84 30 110 3.35e-19 78.2
Msa0661830 MtrunA17_Chr4g0017401 45.263 95 44 3 7 95 17 109 7.89e-19 80.1
Msa0661830 MtrunA17_Chr6g0481071 41.860 86 50 0 7 92 96 181 7.12e-18 75.9
Msa0661830 MtrunA17_Chr1g0168601 43.902 82 46 0 2 83 149 230 9.36e-18 76.6
Msa0661830 MtrunA17_Chr4g0042161 43.820 89 50 0 1 89 46 134 2.84e-17 73.2
Msa0661830 MtrunA17_Chr8g0346011 33.077 130 71 2 7 121 38 166 1.05e-16 74.7
Msa0661830 MtrunA17_Chr3g0144311 46.053 76 40 1 7 82 30 104 1.41e-16 73.9
Msa0661830 MtrunA17_Chr3g0127751 32.117 137 79 3 7 132 27 160 1.42e-16 73.6
Msa0661830 MtrunA17_Chr2g0327921 39.024 82 50 0 7 88 8 89 3.63e-16 68.9
Msa0661830 MtrunA17_Chr3g0101061 39.241 79 46 1 7 85 41 117 4.96e-16 73.6
Msa0661830 MtrunA17_Chr7g0219031 42.424 66 38 0 7 72 41 106 1.13e-15 68.6
Msa0661830 MtrunA17_Chr5g0447761 39.241 79 46 2 7 85 7 83 1.57e-14 69.3
Msa0661830 MtrunA17_Chr1g0198431 41.026 78 46 0 7 84 193 270 1.85e-14 68.2
Msa0661830 MtrunA17_Chr5g0426311 42.105 76 43 1 7 82 17 91 2.16e-14 68.2
Msa0661830 MtrunA17_Chr3g0110211 43.373 83 46 1 8 89 114 196 2.23e-14 68.6
Msa0661830 MtrunA17_Chr2g0290191 36.709 79 48 1 7 85 5 81 2.33e-14 68.9
Msa0661830 MtrunA17_Chr1g0186351 35.443 79 49 1 7 85 7 83 2.78e-14 68.6
Msa0661830 MtrunA17_Chr1g0186351 35.294 85 54 1 7 91 113 196 4.64e-13 65.1
Msa0661830 MtrunA17_Chr3g0120721 33.582 134 80 3 7 134 107 237 4.47e-14 67.8
Msa0661830 MtrunA17_Chr3g0088511 40.541 74 44 0 7 80 33 106 4.55e-14 64.7
Msa0661830 MtrunA17_Chr4g0031091 41.096 73 43 0 7 79 34 106 6.97e-14 63.5
Msa0661830 MtrunA17_Chr7g0276531 47.458 59 31 0 7 65 19 77 8.30e-14 66.2
Msa0661830 MtrunA17_Chr6g0449481 31.373 102 69 1 7 107 134 235 4.43e-13 65.1
Msa0661830 MtrunA17_Chr6g0449481 32.530 83 54 1 7 89 46 126 2.39e-11 60.1
Msa0661830 MtrunA17_Chr4g0065741 35.165 91 58 1 7 97 72 161 7.67e-13 62.0
Msa0661830 MtrunA17_Chr7g0267571 36.047 86 55 0 6 91 212 297 1.43e-12 63.5
Msa0661830 MtrunA17_Chr4g0038111 36.458 96 59 2 9 104 342 435 2.32e-12 63.2
Msa0661830 MtrunA17_Chr5g0419351 39.535 86 52 0 8 93 12 97 9.53e-12 59.3
Msa0661830 MtrunA17_Chr4g0044541 42.857 84 44 2 9 89 125 207 1.62e-11 60.8
Msa0661830 MtrunA17_Chr4g0062931 33.333 126 80 3 8 132 9 131 1.79e-11 60.5
Msa0661830 MtrunA17_Chr7g0265341 43.836 73 40 1 9 81 161 232 1.98e-11 60.5
Msa0661830 MtrunA17_Chr8g0360551 38.554 83 49 2 7 89 74 154 2.80e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0661830 AT4G39260.3 73.626 91 24 0 1 91 1 91 1.69e-45 144
Msa0661830 AT2G21660.2 79.012 81 17 0 3 83 5 85 1.43e-43 141
Msa0661830 AT2G21660.1 79.012 81 17 0 3 83 5 85 2.37e-43 141
Msa0661830 AT4G39260.1 72.289 83 23 0 1 83 1 83 1.44e-40 134
Msa0661830 AT4G39260.2 72.449 98 25 1 1 98 1 96 5.86e-38 125
Msa0661830 AT3G26420.1 52.475 101 48 0 3 103 4 104 4.68e-32 114
Msa0661830 AT3G23830.2 58.537 82 34 0 7 88 36 117 7.86e-29 103
Msa0661830 AT3G23830.1 58.537 82 34 0 7 88 36 117 7.86e-29 103
Msa0661830 AT4G13850.3 56.098 82 36 0 7 88 36 117 1.33e-26 97.4
Msa0661830 AT4G13850.2 56.098 82 36 0 7 88 36 117 1.70e-26 97.4
Msa0661830 AT4G13850.1 56.098 82 36 0 7 88 36 117 1.94e-26 97.4
Msa0661830 AT4G13850.4 55.556 81 36 0 7 87 36 116 5.49e-26 95.5
Msa0661830 AT4G39260.4 55.140 107 24 1 1 107 1 83 2.65e-25 93.2
Msa0661830 AT3G53460.1 51.807 83 40 0 7 89 258 340 1.68e-23 94.0
Msa0661830 AT3G53460.1 42.105 76 44 0 5 80 98 173 5.59e-11 59.3
Msa0661830 AT3G53460.3 51.807 83 40 0 7 89 258 340 1.68e-23 94.0
Msa0661830 AT3G53460.3 42.105 76 44 0 5 80 98 173 5.59e-11 59.3
Msa0661830 AT3G53460.2 51.807 83 40 0 7 89 258 340 1.68e-23 94.0
Msa0661830 AT3G53460.2 42.105 76 44 0 5 80 98 173 5.59e-11 59.3
Msa0661830 AT2G37220.1 50.617 81 40 0 7 87 205 285 1.85e-23 92.8
Msa0661830 AT2G37220.1 43.421 76 43 0 5 80 90 165 4.98e-13 64.7
Msa0661830 AT3G53460.4 51.807 83 40 0 7 89 279 361 2.52e-23 93.6
Msa0661830 AT4G24770.1 50.588 85 42 0 3 87 241 325 8.57e-23 92.0
Msa0661830 AT4G24770.1 40.196 102 61 0 5 106 149 250 1.69e-16 74.7
Msa0661830 AT4G24770.2 50.588 85 42 0 3 87 241 325 8.57e-23 92.0
Msa0661830 AT4G24770.2 40.196 102 61 0 5 106 149 250 1.69e-16 74.7
Msa0661830 AT5G61030.2 53.261 92 43 0 7 98 41 132 1.60e-22 90.9
Msa0661830 AT5G61030.1 53.261 92 43 0 7 98 41 132 1.60e-22 90.9
Msa0661830 AT5G06210.1 44.444 90 50 0 4 93 32 121 1.42e-21 84.7
Msa0661830 AT5G04280.1 45.161 93 51 0 7 99 8 100 1.85e-21 88.2
Msa0661830 AT1G74230.1 52.632 76 35 1 7 82 35 109 5.13e-21 86.7
Msa0661830 AT5G50250.1 50.000 80 40 0 6 85 207 286 5.69e-21 86.3
Msa0661830 AT5G50250.1 39.216 102 62 0 5 106 112 213 3.88e-16 73.6
Msa0661830 AT1G18630.1 50.000 78 39 0 7 84 37 114 9.40e-21 82.8
Msa0661830 AT5G47320.1 49.351 77 39 0 7 83 32 108 1.94e-19 80.9
Msa0661830 AT2G21690.1 47.126 87 41 1 4 85 5 91 2.00e-19 78.6
Msa0661830 AT1G60650.2 42.683 82 47 0 4 85 10 91 4.25e-19 81.3
Msa0661830 AT1G60650.1 42.683 82 47 0 4 85 10 91 4.25e-19 81.3
Msa0661830 AT2G46780.1 43.269 104 52 3 7 104 23 125 2.96e-18 79.7
Msa0661830 AT2G46780.2 43.269 104 52 3 7 104 23 125 2.96e-18 79.7
Msa0661830 AT2G37510.1 51.351 74 36 0 7 80 35 108 3.69e-18 75.9
Msa0661830 AT1G22910.1 44.681 94 46 2 7 95 14 106 5.60e-18 77.8
Msa0661830 AT1G22910.2 44.681 94 46 2 7 95 14 106 7.90e-18 77.4
Msa0661830 AT5G19960.1 34.400 125 80 2 8 132 9 131 2.01e-17 77.4
Msa0661830 AT4G13860.1 45.205 73 40 0 7 79 4 76 3.27e-17 72.0
Msa0661830 AT1G22910.3 44.681 94 46 2 7 95 14 106 4.76e-17 76.3
Msa0661830 AT1G60000.1 45.122 82 45 0 2 83 173 254 5.97e-17 75.1
Msa0661830 AT5G59865.1 45.122 82 45 0 7 88 27 108 6.66e-17 72.0
Msa0661830 AT1G22330.1 40.952 105 56 3 7 108 18 119 1.20e-16 74.7
Msa0661830 AT1G20880.2 46.053 76 40 1 7 82 25 99 2.18e-16 73.9
Msa0661830 AT1G20880.3 46.053 76 40 1 7 82 25 99 2.18e-16 73.9
Msa0661830 AT1G20880.1 46.053 76 40 1 7 82 25 99 2.18e-16 73.9
Msa0661830 AT3G08000.1 44.304 79 44 0 7 85 42 120 2.86e-16 70.9
Msa0661830 AT3G07810.2 40.506 79 45 1 7 85 7 83 3.15e-16 74.7
Msa0661830 AT3G07810.1 40.506 79 45 1 7 85 7 83 3.33e-16 74.3
Msa0661830 AT1G76460.1 46.053 76 40 1 7 82 25 99 8.10e-16 72.4
Msa0661830 AT1G33470.3 46.753 77 38 2 7 82 8 82 9.80e-16 71.6
Msa0661830 AT1G33470.2 46.753 77 38 2 7 82 8 82 1.14e-15 71.6
Msa0661830 AT1G33470.1 46.753 77 38 2 7 82 8 82 1.16e-15 71.6
Msa0661830 AT3G46020.1 38.272 81 50 0 4 84 5 85 1.58e-15 68.2
Msa0661830 AT2G33410.1 32.143 112 74 1 7 118 7 116 2.09e-15 72.0
Msa0661830 AT1G78260.1 43.421 76 42 1 7 82 18 92 5.58e-15 70.1
Msa0661830 AT5G55550.5 39.241 79 46 1 7 85 7 83 5.94e-15 70.9
Msa0661830 AT5G55550.5 31.193 109 74 1 7 115 111 218 5.61e-12 62.4
Msa0661830 AT5G55550.4 39.241 79 46 1 7 85 7 83 5.94e-15 70.9
Msa0661830 AT5G55550.4 31.193 109 74 1 7 115 111 218 5.61e-12 62.4
Msa0661830 AT5G55550.9 39.241 79 46 1 7 85 7 83 5.94e-15 70.9
Msa0661830 AT5G55550.9 31.193 109 74 1 7 115 111 218 5.61e-12 62.4
Msa0661830 AT5G55550.7 39.241 79 46 1 7 85 7 83 5.94e-15 70.9
Msa0661830 AT5G55550.7 31.193 109 74 1 7 115 111 218 5.61e-12 62.4
Msa0661830 AT5G55550.1 39.241 79 46 1 7 85 7 83 5.94e-15 70.9
Msa0661830 AT5G55550.1 31.193 109 74 1 7 115 111 218 5.61e-12 62.4
Msa0661830 AT4G26650.1 37.975 79 47 1 7 85 16 92 6.33e-15 70.9
Msa0661830 AT4G26650.2 37.975 79 47 1 7 85 13 89 6.63e-15 70.9
Msa0661830 AT5G55550.2 39.241 79 46 1 7 85 7 83 7.36e-15 70.5
Msa0661830 AT5G55550.2 31.193 109 74 1 7 115 111 218 5.23e-12 62.4
Msa0661830 AT5G55550.3 39.241 79 46 1 7 85 7 83 7.36e-15 70.5
Msa0661830 AT5G55550.3 31.193 109 74 1 7 115 111 218 5.23e-12 62.4
Msa0661830 AT5G55550.6 39.241 79 46 1 7 85 7 83 7.36e-15 70.5
Msa0661830 AT5G55550.6 31.193 109 74 1 7 115 111 218 5.23e-12 62.4
Msa0661830 AT5G55550.11 39.241 79 46 1 7 85 7 83 7.36e-15 70.5
Msa0661830 AT5G55550.11 31.193 109 74 1 7 115 111 218 5.23e-12 62.4
Msa0661830 AT1G78260.2 43.421 76 42 1 7 82 18 92 8.66e-15 69.3
Msa0661830 AT4G14300.1 37.975 79 47 1 7 85 7 83 1.03e-14 70.1
Msa0661830 AT4G14300.2 37.975 79 47 1 7 85 7 83 1.03e-14 70.1
Msa0661830 AT1G73530.1 36.250 80 51 0 7 86 78 157 3.35e-14 66.6
Msa0661830 AT5G54580.1 44.048 84 47 0 2 85 52 135 4.90e-14 65.5
Msa0661830 AT1G01080.1 41.463 82 45 2 1 81 207 286 5.74e-14 67.4
Msa0661830 AT1G01080.2 41.463 82 45 2 1 81 208 287 6.26e-14 67.4
Msa0661830 AT5G55550.8 40.845 71 40 1 7 77 7 75 1.02e-13 67.4
Msa0661830 AT5G55550.8 31.193 109 74 1 7 115 158 265 5.11e-12 62.4
Msa0661830 AT2G23350.1 48.611 72 36 1 8 79 136 206 1.04e-13 67.4
Msa0661830 AT5G53720.1 40.404 99 53 3 5 103 8 100 1.04e-13 63.2
Msa0661830 AT3G20930.1 37.500 80 50 0 7 86 283 362 1.11e-13 67.0
Msa0661830 AT5G55550.10 40.845 71 40 1 7 77 7 75 1.23e-13 67.0
Msa0661830 AT5G55550.10 31.193 109 74 1 7 115 158 265 5.09e-12 62.4
Msa0661830 AT3G13224.2 34.568 81 53 0 7 87 110 190 1.38e-13 66.6
Msa0661830 AT3G13224.2 33.735 83 53 1 7 89 20 100 2.51e-12 63.2
Msa0661830 AT2G27330.1 29.348 92 65 0 8 99 23 114 1.55e-13 63.2
Msa0661830 AT3G13224.3 34.568 81 53 0 7 87 101 181 2.60e-13 65.9
Msa0661830 AT3G13224.3 33.333 93 56 2 1 89 1 91 1.29e-12 63.9
Msa0661830 AT3G54770.3 42.105 76 43 1 7 82 18 92 3.16e-13 65.1
Msa0661830 AT3G54770.1 42.105 76 43 1 7 82 18 92 3.60e-13 65.1
Msa0661830 AT5G47620.1 35.443 79 49 1 7 85 7 83 4.24e-13 65.5
Msa0661830 AT5G47620.2 35.443 79 49 1 7 85 7 83 4.24e-13 65.5
Msa0661830 AT5G47620.5 35.443 79 49 1 7 85 7 83 4.24e-13 65.5
Msa0661830 AT4G13860.2 47.458 59 31 0 22 80 2 60 4.77e-13 60.8
Msa0661830 AT3G52150.2 44.156 77 43 0 6 82 177 253 6.47e-13 64.3
Msa0661830 AT3G52150.1 44.156 77 43 0 6 82 177 253 6.47e-13 64.3
Msa0661830 AT1G17640.2 38.750 80 47 1 7 86 67 144 7.96e-13 64.7
Msa0661830 AT1G17640.2 34.177 79 52 0 7 85 158 236 3.86e-12 62.8
Msa0661830 AT1G17640.1 38.750 80 47 1 7 86 67 144 7.96e-13 64.7
Msa0661830 AT1G17640.1 34.177 79 52 0 7 85 158 236 3.86e-12 62.8
Msa0661830 AT1G17640.3 38.750 80 47 1 7 86 67 144 7.96e-13 64.7
Msa0661830 AT1G17640.3 34.177 79 52 0 7 85 158 236 3.86e-12 62.8
Msa0661830 AT2G37510.2 38.384 99 36 1 7 80 35 133 1.49e-12 62.0
Msa0661830 AT2G18510.1 40.964 83 48 1 8 89 114 196 1.60e-12 63.9
Msa0661830 AT5G53680.1 49.254 67 27 2 7 66 14 80 2.25e-12 61.2
Msa0661830 AT3G14100.1 39.535 86 51 1 5 90 143 227 2.30e-12 63.5
Msa0661830 AT5G51300.1 42.308 78 45 0 5 82 479 556 4.50e-12 62.8
Msa0661830 AT5G51300.2 42.308 78 45 0 5 82 479 556 4.50e-12 62.8
Msa0661830 AT5G51300.3 42.308 78 45 0 5 82 479 556 4.50e-12 62.8
Msa0661830 AT1G54080.1 41.026 78 46 0 5 82 147 224 5.07e-12 62.4
Msa0661830 AT5G47620.4 36.111 72 44 1 7 78 7 76 5.68e-12 62.4
Msa0661830 AT2G22090.2 40.230 87 50 2 7 93 105 189 8.04e-12 61.6
Msa0661830 AT5G40490.1 34.177 79 52 0 7 85 131 209 9.03e-12 61.6
Msa0661830 AT2G22090.1 40.230 87 50 2 7 93 105 189 9.58e-12 61.6
Msa0661830 AT5G11412.1 42.105 76 43 1 7 82 53 127 9.61e-12 59.7
Msa0661830 AT4G34110.1 40.278 72 42 1 8 79 126 196 9.80e-12 61.6
Msa0661830 AT3G20930.2 35.294 85 50 1 7 86 283 367 1.65e-11 60.8
Msa0661830 AT2G22100.1 45.763 59 32 0 8 66 165 223 1.69e-11 60.8
Msa0661830 AT2G19380.1 45.614 57 31 0 9 65 411 467 2.01e-11 60.8
Msa0661830 AT1G01080.3 42.857 56 32 0 1 56 207 262 4.21e-11 59.3
Msa0661830 AT5G40490.2 33.333 81 54 0 7 87 114 194 4.74e-11 59.7
Msa0661830 AT3G13224.1 32.323 99 64 2 7 105 20 115 8.99e-11 58.2
Msa0661830 AT3G52380.1 36.250 80 51 0 6 85 219 298 9.82e-11 58.5

Find 81 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTCCGCCATGGAAAT+TGG 0.191164 4_3:-73398499 None:intergenic
ATTCCAAATCTAAACCAATT+TGG 0.260003 4_3:-73399416 None:intergenic
GAAATTGAATGTTCTGAATA+TGG 0.263824 4_3:+73399377 Msa0661830:three_prime_UTR
AATTGGGGAAAGGGTTAAAA+TGG 0.277694 4_3:-73398482 None:intergenic
TATCTGTTATTATGCCAAAT+TGG 0.291052 4_3:+73399402 Msa0661830:three_prime_UTR
ACTGGAAGATCAAGAGGATT+TGG 0.294131 4_3:+73398920 Msa0661830:CDS
ATGCCAAATTGGTTTAGATT+TGG 0.298687 4_3:+73399413 Msa0661830:three_prime_UTR
CGCGGAGGTGGTGGTGGATA+TGG 0.305180 4_3:+73399082 Msa0661830:CDS
CGTCGTGGAGGTGGTGGATA+TGG 0.314693 4_3:+73399118 Msa0661830:CDS
ATCACCGCCCCTCGAGTATC+TGG 0.330076 4_3:-73399287 None:intergenic
CAACTTCCGCCATGGAAATT+GGG 0.336480 4_3:-73398498 None:intergenic
AAATAAACAGCATAAAGTTT+TGG 0.339669 4_3:-73399541 None:intergenic
GTTATCACCGATCGTGAAAC+TGG 0.362798 4_3:+73398902 Msa0661830:CDS
GCCGGAGGCGGCGGTGGTGG+TGG 0.372641 4_3:+73399055 Msa0661830:CDS
AGTGCCGGAGGCGGCGGTGG+TGG 0.383285 4_3:+73399052 Msa0661830:CDS
GGCAGTGCCGGAGGCGGCGG+TGG 0.394164 4_3:+73399049 Msa0661830:CDS
GGATACCGCGGAGGTGGTGG+TGG 0.412147 4_3:+73399076 Msa0661830:CDS
GGTGGTGGATATGGCGGAGG+TGG 0.417575 4_3:+73399091 Msa0661830:CDS
GGTGGATACCGCGGAGGTGG+TGG 0.418043 4_3:+73399073 Msa0661830:CDS
CGCCATGGAAATTGGGGAAA+GGG 0.422744 4_3:-73398491 None:intergenic
GTGTTTGTGGTTCTGAGTAT+TGG 0.436138 4_3:+73399440 Msa0661830:three_prime_UTR
GGTGGTGAACGTCGTGGAGG+TGG 0.450443 4_3:+73399109 Msa0661830:CDS
TAGATTTGGAATTGTGTTTG+TGG 0.450563 4_3:+73399427 Msa0661830:three_prime_UTR
TCCACCACCACCGCCGCCTC+CGG 0.455593 4_3:-73399056 None:intergenic
GTGGCTCTGACAGTAGAAAC+TGG 0.459380 4_3:+73399314 Msa0661830:CDS
CGTGGCAGTGCCGGAGGCGG+CGG 0.463166 4_3:+73399046 Msa0661830:CDS
GTTGAATACCGATGCTTTGT+TGG 0.464495 4_3:+73398517 Msa0661830:CDS
CTTTGTTGGTGGACTTGCAT+GGG 0.465470 4_3:+73398531 Msa0661830:CDS
GCTCAGAGTCGTGGCAGTGC+CGG 0.470908 4_3:+73399037 Msa0661830:CDS
TCGAGGGGCGGTGATGGCGG+TGG 0.471822 4_3:+73399295 Msa0661830:CDS
GGATATGGTGGAGGTGGCTA+CGG 0.473053 4_3:+73399253 Msa0661830:intron
GGTGGTGGATACCGCGGAGG+TGG 0.479842 4_3:+73399070 Msa0661830:CDS
AACCCTTTCCCCAATTTCCA+TGG 0.491236 4_3:+73398489 Msa0661830:exon
AGATACTCGAGGGGCGGTGA+TGG 0.493449 4_3:+73399289 Msa0661830:CDS
CTCAAGAGCTTCGTTGTCAG+TGG 0.495714 4_3:-73398554 None:intergenic
GGTGGTGGTGGATATGGCGG+AGG 0.496613 4_3:+73399088 Msa0661830:CDS
GTTCATATGAACAAACAATC+AGG 0.500693 4_3:-73399486 None:intergenic
GCGATGAAAGATGCGATTGA+AGG 0.503882 4_3:+73398968 Msa0661830:CDS
ATGAACGGCCAAGATCTTGA+TGG 0.505893 4_3:+73398992 Msa0661830:CDS
TACTCGAGGGGCGGTGATGG+CGG 0.506509 4_3:+73399292 Msa0661830:CDS
GGTGGAGGTGGCTACGGAGA+TGG 0.509409 4_3:+73399259 Msa0661830:intron
TGTCACATTCTCTACGGAGC+AGG 0.509697 4_3:+73398946 Msa0661830:CDS
CGTGGAGGTGGTGGATATGG+TGG 0.512534 4_3:+73399121 Msa0661830:CDS
GGTGAACGTCGTGGAGGTGG+TGG 0.516929 4_3:+73399112 Msa0661830:CDS
GCTTTGTTGGTGGACTTGCA+TGG 0.519425 4_3:+73398530 Msa0661830:CDS
AGTCGTGGCAGTGCCGGAGG+CGG 0.520111 4_3:+73399043 Msa0661830:CDS
TGGATTTGTCACATTCTCTA+CGG 0.520808 4_3:+73398940 Msa0661830:CDS
TGATCTTCCAGTTTCACGAT+CGG 0.521619 4_3:-73398909 None:intergenic
TGTTACGTCCATCAAGATCT+TGG 0.527371 4_3:-73399000 None:intergenic
AACTTCCGCCATGGAAATTG+GGG 0.531831 4_3:-73398497 None:intergenic
ATTGGGGAAAGGGTTAAAAT+GGG 0.532461 4_3:-73398481 None:intergenic
GGAGGTGGTGGATATGGTGG+AGG 0.534655 4_3:+73399124 Msa0661830:CDS
CCGCCATGGAAATTGGGGAA+AGG 0.539529 4_3:-73398492 None:intergenic
CGATGAAAGATGCGATTGAA+GGG 0.542649 4_3:+73398969 Msa0661830:CDS
TGGTGAAATCGTCGAATCGA+AGG 0.542807 4_3:+73398594 Msa0661830:CDS
CGATTCGACGATTTCACCAA+AGG 0.547099 4_3:-73398590 None:intergenic
GGAGGTGGCTACGGAGATGG+TGG 0.556120 4_3:+73399262 Msa0661830:intron
CAGAGTCGTGGCAGTGCCGG+AGG 0.558538 4_3:+73399040 Msa0661830:CDS
TTGGTTTCGTGTTCTTCATG+TGG 0.561892 4_3:+73399459 Msa0661830:three_prime_UTR
CTTATAGTAGCAATAGAGTA+CGG 0.563266 4_3:-73399569 None:intergenic
CAGTTCATCAAATGAATAGT+CGG 0.565020 4_3:+73399508 Msa0661830:three_prime_UTR
CGTGAAACTGGAAGATCAAG+AGG 0.575579 4_3:+73398914 Msa0661830:CDS
GAATACCGATGCTTTGTTGG+TGG 0.577401 4_3:+73398520 Msa0661830:CDS
ACGTAACATCACTGTGAATG+AGG 0.581570 4_3:+73399015 Msa0661830:CDS
GGCTCCAGATACTCGAGGGG+CGG 0.583740 4_3:+73399283 Msa0661830:CDS
TCGGTATTCAACTTCCGCCA+TGG 0.595134 4_3:-73398506 None:intergenic
GGAGGTGGTGGTGGATATGG+CGG 0.597374 4_3:+73399085 Msa0661830:CDS
CTCTGACAGTAGAAACTGGA+GGG 0.619176 4_3:+73399318 Msa0661830:CDS
GATGCGATTGAAGGGATGAA+CGG 0.619661 4_3:+73398977 Msa0661830:CDS
GTGAATGAGGCTCAGAGTCG+TGG 0.619893 4_3:+73399028 Msa0661830:CDS
GGCGGTGGTGGTGGATACCG+CGG 0.623826 4_3:+73399064 Msa0661830:CDS
CAAGTCCACCAACAAAGCAT+CGG 0.636350 4_3:-73398525 None:intergenic
GGAGGTGGTGAACGTCGTGG+AGG 0.637604 4_3:+73399106 Msa0661830:CDS
TGGTGGCTCCAGATACTCGA+GGG 0.637949 4_3:+73399279 Msa0661830:CDS
GGCGGAGGTGGTGAACGTCG+TGG 0.655000 4_3:+73399103 Msa0661830:CDS
GGTGGTGGTGGATACCGCGG+AGG 0.669154 4_3:+73399067 Msa0661830:CDS
CCTTTCCCCAATTTCCATGG+CGG 0.683414 4_3:+73398492 Msa0661830:exon
ATGGTGGCTCCAGATACTCG+AGG 0.685735 4_3:+73399278 Msa0661830:CDS
CATATCCACCACCACCTCCG+CGG 0.713479 4_3:-73399081 None:intergenic
GCTCTGACAGTAGAAACTGG+AGG 0.714944 4_3:+73399317 Msa0661830:CDS
GGTGGCTCCAGATACTCGAG+GGG 0.716326 4_3:+73399280 Msa0661830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAATCACTTCAAAT+CGG + chr4_3:73398760-73398779 Msa0661830:intron 15.0%
!!! TTTTATTAATCACTTCAAAT+CGG + chr4_3:73398760-73398779 Msa0661830:intron 15.0%
!!! AAATAAACAGCATAAAGTTT+TGG - chr4_3:73399544-73399563 None:intergenic 20.0%
!!! AAATAAACAGCATAAAGTTT+TGG - chr4_3:73399544-73399563 None:intergenic 20.0%
!!! ACGATTCTTTGTTTTTGTTT+AGG + chr4_3:73398880-73398899 Msa0661830:intron 25.0%
!! GAAATTGAATGTTCTGAATA+TGG + chr4_3:73399377-73399396 Msa0661830:three_prime_UTR 25.0%
! TATCTGTTATTATGCCAAAT+TGG + chr4_3:73399402-73399421 Msa0661830:three_prime_UTR 25.0%
! ATTCCAAATCTAAACCAATT+TGG - chr4_3:73399419-73399438 None:intergenic 25.0%
!!! ACGATTCTTTGTTTTTGTTT+AGG + chr4_3:73398880-73398899 Msa0661830:intron 25.0%
!! GAAATTGAATGTTCTGAATA+TGG + chr4_3:73399377-73399396 Msa0661830:three_prime_UTR 25.0%
! TATCTGTTATTATGCCAAAT+TGG + chr4_3:73399402-73399421 Msa0661830:three_prime_UTR 25.0%
! ATTCCAAATCTAAACCAATT+TGG - chr4_3:73399419-73399438 None:intergenic 25.0%
ATGGGAAAACAAGAAAAAAG+AGG - chr4_3:73398466-73398485 None:intergenic 30.0%
TGTGTAAATTGAAGATCGAT+CGG + chr4_3:73398801-73398820 Msa0661830:intron 30.0%
! ATGCCAAATTGGTTTAGATT+TGG + chr4_3:73399413-73399432 Msa0661830:three_prime_UTR 30.0%
! TAGATTTGGAATTGTGTTTG+TGG + chr4_3:73399427-73399446 Msa0661830:three_prime_UTR 30.0%
GTTCATATGAACAAACAATC+AGG - chr4_3:73399489-73399508 None:intergenic 30.0%
CAGTTCATCAAATGAATAGT+CGG + chr4_3:73399508-73399527 Msa0661830:three_prime_UTR 30.0%
CTTATAGTAGCAATAGAGTA+CGG - chr4_3:73399572-73399591 None:intergenic 30.0%
ATGGGAAAACAAGAAAAAAG+AGG - chr4_3:73398466-73398485 None:intergenic 30.0%
TGTGTAAATTGAAGATCGAT+CGG + chr4_3:73398801-73398820 Msa0661830:intron 30.0%
! ATGCCAAATTGGTTTAGATT+TGG + chr4_3:73399413-73399432 Msa0661830:three_prime_UTR 30.0%
! TAGATTTGGAATTGTGTTTG+TGG + chr4_3:73399427-73399446 Msa0661830:three_prime_UTR 30.0%
GTTCATATGAACAAACAATC+AGG - chr4_3:73399489-73399508 None:intergenic 30.0%
CAGTTCATCAAATGAATAGT+CGG + chr4_3:73399508-73399527 Msa0661830:three_prime_UTR 30.0%
CTTATAGTAGCAATAGAGTA+CGG - chr4_3:73399572-73399591 None:intergenic 30.0%
ATTGGGGAAAGGGTTAAAAT+GGG - chr4_3:73398484-73398503 None:intergenic 35.0%
AATTGGGGAAAGGGTTAAAA+TGG - chr4_3:73398485-73398504 None:intergenic 35.0%
TGGATTTGTCACATTCTCTA+CGG + chr4_3:73398940-73398959 Msa0661830:CDS 35.0%
ATTGGGGAAAGGGTTAAAAT+GGG - chr4_3:73398484-73398503 None:intergenic 35.0%
AATTGGGGAAAGGGTTAAAA+TGG - chr4_3:73398485-73398504 None:intergenic 35.0%
TGGATTTGTCACATTCTCTA+CGG + chr4_3:73398940-73398959 Msa0661830:CDS 35.0%
GTTGAATACCGATGCTTTGT+TGG + chr4_3:73398517-73398536 Msa0661830:CDS 40.0%
!!! GAGAAAGCGTTTTCTTCCTT+TGG + chr4_3:73398574-73398593 Msa0661830:CDS 40.0%
TTTCCGATCTCAGCAACAAA+CGG - chr4_3:73398621-73398640 None:intergenic 40.0%
ATCGGAAATCTGACACGATT+CGG + chr4_3:73398633-73398652 Msa0661830:intron 40.0%
! AATCTGACACGATTCGGATT+TGG + chr4_3:73398639-73398658 Msa0661830:intron 40.0%
ACAGAACAGAACAGAACAGA+AGG - chr4_3:73398678-73398697 None:intergenic 40.0%
TGATCTTCCAGTTTCACGAT+CGG - chr4_3:73398912-73398931 None:intergenic 40.0%
ACTGGAAGATCAAGAGGATT+TGG + chr4_3:73398920-73398939 Msa0661830:CDS 40.0%
CGATGAAAGATGCGATTGAA+GGG + chr4_3:73398969-73398988 Msa0661830:CDS 40.0%
TGTTACGTCCATCAAGATCT+TGG - chr4_3:73399003-73399022 None:intergenic 40.0%
ACGTAACATCACTGTGAATG+AGG + chr4_3:73399015-73399034 Msa0661830:CDS 40.0%
!! GTGTTTGTGGTTCTGAGTAT+TGG + chr4_3:73399440-73399459 Msa0661830:three_prime_UTR 40.0%
TTGGTTTCGTGTTCTTCATG+TGG + chr4_3:73399459-73399478 Msa0661830:three_prime_UTR 40.0%
GTTGAATACCGATGCTTTGT+TGG + chr4_3:73398517-73398536 Msa0661830:CDS 40.0%
!!! GAGAAAGCGTTTTCTTCCTT+TGG + chr4_3:73398574-73398593 Msa0661830:CDS 40.0%
TTTCCGATCTCAGCAACAAA+CGG - chr4_3:73398621-73398640 None:intergenic 40.0%
ATCGGAAATCTGACACGATT+CGG + chr4_3:73398633-73398652 Msa0661830:intron 40.0%
! AATCTGACACGATTCGGATT+TGG + chr4_3:73398639-73398658 Msa0661830:intron 40.0%
ACAGAACAGAACAGAACAGA+AGG - chr4_3:73398678-73398697 None:intergenic 40.0%
TGATCTTCCAGTTTCACGAT+CGG - chr4_3:73398912-73398931 None:intergenic 40.0%
ACTGGAAGATCAAGAGGATT+TGG + chr4_3:73398920-73398939 Msa0661830:CDS 40.0%
CGATGAAAGATGCGATTGAA+GGG + chr4_3:73398969-73398988 Msa0661830:CDS 40.0%
TGTTACGTCCATCAAGATCT+TGG - chr4_3:73399003-73399022 None:intergenic 40.0%
ACGTAACATCACTGTGAATG+AGG + chr4_3:73399015-73399034 Msa0661830:CDS 40.0%
!! GTGTTTGTGGTTCTGAGTAT+TGG + chr4_3:73399440-73399459 Msa0661830:three_prime_UTR 40.0%
TTGGTTTCGTGTTCTTCATG+TGG + chr4_3:73399459-73399478 Msa0661830:three_prime_UTR 40.0%
AACCCTTTCCCCAATTTCCA+TGG + chr4_3:73398489-73398508 Msa0661830:exon 45.0%
AACTTCCGCCATGGAAATTG+GGG - chr4_3:73398500-73398519 None:intergenic 45.0%
CAACTTCCGCCATGGAAATT+GGG - chr4_3:73398501-73398520 None:intergenic 45.0%
TCAACTTCCGCCATGGAAAT+TGG - chr4_3:73398502-73398521 None:intergenic 45.0%
! GAATACCGATGCTTTGTTGG+TGG + chr4_3:73398520-73398539 Msa0661830:CDS 45.0%
CAAGTCCACCAACAAAGCAT+CGG - chr4_3:73398528-73398547 None:intergenic 45.0%
!! CTTTGTTGGTGGACTTGCAT+GGG + chr4_3:73398531-73398550 Msa0661830:CDS 45.0%
CGATTCGACGATTTCACCAA+AGG - chr4_3:73398593-73398612 None:intergenic 45.0%
TGGTGAAATCGTCGAATCGA+AGG + chr4_3:73398594-73398613 Msa0661830:CDS 45.0%
GTTATCACCGATCGTGAAAC+TGG + chr4_3:73398902-73398921 Msa0661830:CDS 45.0%
CGTGAAACTGGAAGATCAAG+AGG + chr4_3:73398914-73398933 Msa0661830:CDS 45.0%
GCGATGAAAGATGCGATTGA+AGG + chr4_3:73398968-73398987 Msa0661830:CDS 45.0%
GATGCGATTGAAGGGATGAA+CGG + chr4_3:73398977-73398996 Msa0661830:CDS 45.0%
ATGAACGGCCAAGATCTTGA+TGG + chr4_3:73398992-73399011 Msa0661830:CDS 45.0%
CTCTGACAGTAGAAACTGGA+GGG + chr4_3:73399318-73399337 Msa0661830:CDS 45.0%
AACCCTTTCCCCAATTTCCA+TGG + chr4_3:73398489-73398508 Msa0661830:exon 45.0%
AACTTCCGCCATGGAAATTG+GGG - chr4_3:73398500-73398519 None:intergenic 45.0%
CAACTTCCGCCATGGAAATT+GGG - chr4_3:73398501-73398520 None:intergenic 45.0%
TCAACTTCCGCCATGGAAAT+TGG - chr4_3:73398502-73398521 None:intergenic 45.0%
! GAATACCGATGCTTTGTTGG+TGG + chr4_3:73398520-73398539 Msa0661830:CDS 45.0%
CAAGTCCACCAACAAAGCAT+CGG - chr4_3:73398528-73398547 None:intergenic 45.0%
!! CTTTGTTGGTGGACTTGCAT+GGG + chr4_3:73398531-73398550 Msa0661830:CDS 45.0%
CGATTCGACGATTTCACCAA+AGG - chr4_3:73398593-73398612 None:intergenic 45.0%
TGGTGAAATCGTCGAATCGA+AGG + chr4_3:73398594-73398613 Msa0661830:CDS 45.0%
GTTATCACCGATCGTGAAAC+TGG + chr4_3:73398902-73398921 Msa0661830:CDS 45.0%
CGTGAAACTGGAAGATCAAG+AGG + chr4_3:73398914-73398933 Msa0661830:CDS 45.0%
GCGATGAAAGATGCGATTGA+AGG + chr4_3:73398968-73398987 Msa0661830:CDS 45.0%
GATGCGATTGAAGGGATGAA+CGG + chr4_3:73398977-73398996 Msa0661830:CDS 45.0%
ATGAACGGCCAAGATCTTGA+TGG + chr4_3:73398992-73399011 Msa0661830:CDS 45.0%
CTCTGACAGTAGAAACTGGA+GGG + chr4_3:73399318-73399337 Msa0661830:CDS 45.0%
CGCCATGGAAATTGGGGAAA+GGG - chr4_3:73398494-73398513 None:intergenic 50.0%
CCTTTCCCCAATTTCCATGG+CGG + chr4_3:73398492-73398511 Msa0661830:exon 50.0%
TCGGTATTCAACTTCCGCCA+TGG - chr4_3:73398509-73398528 None:intergenic 50.0%
!! GCTTTGTTGGTGGACTTGCA+TGG + chr4_3:73398530-73398549 Msa0661830:CDS 50.0%
CTCAAGAGCTTCGTTGTCAG+TGG - chr4_3:73398557-73398576 None:intergenic 50.0%
! GGTCCGTTTGTTGCTGAGAT+CGG + chr4_3:73398615-73398634 Msa0661830:intron 50.0%
TGTCACATTCTCTACGGAGC+AGG + chr4_3:73398946-73398965 Msa0661830:CDS 50.0%
!! GTGGCTCTGACAGTAGAAAC+TGG + chr4_3:73399314-73399333 Msa0661830:CDS 50.0%
GCTCTGACAGTAGAAACTGG+AGG + chr4_3:73399317-73399336 Msa0661830:CDS 50.0%
CGCCATGGAAATTGGGGAAA+GGG - chr4_3:73398494-73398513 None:intergenic 50.0%
CCTTTCCCCAATTTCCATGG+CGG + chr4_3:73398492-73398511 Msa0661830:exon 50.0%
TCGGTATTCAACTTCCGCCA+TGG - chr4_3:73398509-73398528 None:intergenic 50.0%
!! GCTTTGTTGGTGGACTTGCA+TGG + chr4_3:73398530-73398549 Msa0661830:CDS 50.0%
CTCAAGAGCTTCGTTGTCAG+TGG - chr4_3:73398557-73398576 None:intergenic 50.0%
! GGTCCGTTTGTTGCTGAGAT+CGG + chr4_3:73398615-73398634 Msa0661830:intron 50.0%
TGTCACATTCTCTACGGAGC+AGG + chr4_3:73398946-73398965 Msa0661830:CDS 50.0%
!! GTGGCTCTGACAGTAGAAAC+TGG + chr4_3:73399314-73399333 Msa0661830:CDS 50.0%
GCTCTGACAGTAGAAACTGG+AGG + chr4_3:73399317-73399336 Msa0661830:CDS 50.0%
CCGCCATGGAAATTGGGGAA+AGG - chr4_3:73398495-73398514 None:intergenic 55.0%
GTGAATGAGGCTCAGAGTCG+TGG + chr4_3:73399028-73399047 Msa0661830:CDS 55.0%
!! CGTGATGGTGGTGGTGGATA+TGG + chr4_3:73399238-73399257 Msa0661830:intron 55.0%
!! GATGGTGGTGGTGGATATGG+TGG + chr4_3:73399241-73399260 Msa0661830:intron 55.0%
! GGATATGGTGGAGGTGGCTA+CGG + chr4_3:73399253-73399272 Msa0661830:intron 55.0%
ATGGTGGCTCCAGATACTCG+AGG + chr4_3:73399278-73399297 Msa0661830:CDS 55.0%
TGGTGGCTCCAGATACTCGA+GGG + chr4_3:73399279-73399298 Msa0661830:CDS 55.0%
CCGCCATGGAAATTGGGGAA+AGG - chr4_3:73398495-73398514 None:intergenic 55.0%
GTGAATGAGGCTCAGAGTCG+TGG + chr4_3:73399028-73399047 Msa0661830:CDS 55.0%
!! CGTGATGGTGGTGGTGGATA+TGG + chr4_3:73399238-73399257 Msa0661830:intron 55.0%
!! GATGGTGGTGGTGGATATGG+TGG + chr4_3:73399241-73399260 Msa0661830:intron 55.0%
! GGATATGGTGGAGGTGGCTA+CGG + chr4_3:73399253-73399272 Msa0661830:intron 55.0%
ATGGTGGCTCCAGATACTCG+AGG + chr4_3:73399278-73399297 Msa0661830:CDS 55.0%
TGGTGGCTCCAGATACTCGA+GGG + chr4_3:73399279-73399298 Msa0661830:CDS 55.0%
CATATCCACCACCACCTCCG+CGG - chr4_3:73399084-73399103 None:intergenic 60.0%
!! GGAGGTGGTGGTGGATATGG+CGG + chr4_3:73399085-73399104 Msa0661830:CDS 60.0%
!! CGTCGTGGAGGTGGTGGATA+TGG + chr4_3:73399118-73399137 Msa0661830:CDS 60.0%
!! CGTGGAGGTGGTGGATATGG+TGG + chr4_3:73399121-73399140 Msa0661830:CDS 60.0%
!! GGAGGTGGTGGATATGGTGG+AGG + chr4_3:73399124-73399143 Msa0661830:CDS 60.0%
!! GGTGGTGGATATGGTGGAGG+TGG + chr4_3:73399127-73399146 Msa0661830:intron 60.0%
! GGTGGATATGGTGGAGGTGG+CGG + chr4_3:73399130-73399149 Msa0661830:intron 60.0%
! GTGGATATGGTGGAGGTGGC+GGG + chr4_3:73399131-73399150 Msa0661830:intron 60.0%
! TGGATATGGTGGAGGTGGCG+GGG + chr4_3:73399132-73399151 Msa0661830:intron 60.0%
ATCCACCACCTCCTCCACGA+CGG - chr4_3:73399174-73399193 None:intergenic 60.0%
!! CGTGGAGGAGGTGGTGGATA+TGG + chr4_3:73399175-73399194 Msa0661830:intron 60.0%
!! GGAGGAGGTGGTGGATATGG+TGG + chr4_3:73399178-73399197 Msa0661830:intron 60.0%
!! GGAGGTGGTGGATATGGTGG+AGG + chr4_3:73399124-73399143 Msa0661830:CDS 60.0%
!! GGTGGTGGATATGGTGGAGG+AGG + chr4_3:73399127-73399146 Msa0661830:intron 60.0%
! GGTGGATATGGTGGAGGAGG+CGG + chr4_3:73399187-73399206 Msa0661830:intron 60.0%
! GTGGATATGGTGGAGGAGGC+GGG + chr4_3:73399188-73399207 Msa0661830:intron 60.0%
! TGGATATGGTGGAGGAGGCG+GGG + chr4_3:73399189-73399208 Msa0661830:intron 60.0%
!! GGTGGTGGTGGATATGGTGG+AGG + chr4_3:73399244-73399263 Msa0661830:intron 60.0%
!! GGTGGTGGATATGGTGGAGG+TGG + chr4_3:73399127-73399146 Msa0661830:intron 60.0%
GGTGGCTCCAGATACTCGAG+GGG + chr4_3:73399280-73399299 Msa0661830:CDS 60.0%
ATCACCGCCCCTCGAGTATC+TGG - chr4_3:73399290-73399309 None:intergenic 60.0%
AGATACTCGAGGGGCGGTGA+TGG + chr4_3:73399289-73399308 Msa0661830:CDS 60.0%
CATATCCACCACCACCTCCG+CGG - chr4_3:73399084-73399103 None:intergenic 60.0%
!! GGAGGTGGTGGTGGATATGG+CGG + chr4_3:73399085-73399104 Msa0661830:CDS 60.0%
!! CGTCGTGGAGGTGGTGGATA+TGG + chr4_3:73399118-73399137 Msa0661830:CDS 60.0%
!! CGTGGAGGTGGTGGATATGG+TGG + chr4_3:73399121-73399140 Msa0661830:CDS 60.0%
!! GGAGGTGGTGGATATGGTGG+AGG + chr4_3:73399124-73399143 Msa0661830:CDS 60.0%
!! GGTGGTGGATATGGTGGAGG+TGG + chr4_3:73399127-73399146 Msa0661830:intron 60.0%
! GGTGGATATGGTGGAGGTGG+CGG + chr4_3:73399130-73399149 Msa0661830:intron 60.0%
! GTGGATATGGTGGAGGTGGC+GGG + chr4_3:73399131-73399150 Msa0661830:intron 60.0%
! TGGATATGGTGGAGGTGGCG+GGG + chr4_3:73399132-73399151 Msa0661830:intron 60.0%
ATCCACCACCTCCTCCACGA+CGG - chr4_3:73399174-73399193 None:intergenic 60.0%
!! CGTGGAGGAGGTGGTGGATA+TGG + chr4_3:73399175-73399194 Msa0661830:intron 60.0%
!! GGAGGAGGTGGTGGATATGG+TGG + chr4_3:73399178-73399197 Msa0661830:intron 60.0%
!! GGAGGTGGTGGATATGGTGG+AGG + chr4_3:73399124-73399143 Msa0661830:CDS 60.0%
!! GGTGGTGGATATGGTGGAGG+AGG + chr4_3:73399127-73399146 Msa0661830:intron 60.0%
! GGTGGATATGGTGGAGGAGG+CGG + chr4_3:73399187-73399206 Msa0661830:intron 60.0%
! GTGGATATGGTGGAGGAGGC+GGG + chr4_3:73399188-73399207 Msa0661830:intron 60.0%
! TGGATATGGTGGAGGAGGCG+GGG + chr4_3:73399189-73399208 Msa0661830:intron 60.0%
!! GGTGGTGGTGGATATGGTGG+AGG + chr4_3:73399244-73399263 Msa0661830:intron 60.0%
!! GGTGGTGGATATGGTGGAGG+TGG + chr4_3:73399127-73399146 Msa0661830:intron 60.0%
GGTGGCTCCAGATACTCGAG+GGG + chr4_3:73399280-73399299 Msa0661830:CDS 60.0%
ATCACCGCCCCTCGAGTATC+TGG - chr4_3:73399290-73399309 None:intergenic 60.0%
AGATACTCGAGGGGCGGTGA+TGG + chr4_3:73399289-73399308 Msa0661830:CDS 60.0%
GCTCAGAGTCGTGGCAGTGC+CGG + chr4_3:73399037-73399056 Msa0661830:CDS 65.0%
!! CGCGGAGGTGGTGGTGGATA+TGG + chr4_3:73399082-73399101 Msa0661830:CDS 65.0%
!! GGTGGTGGTGGATATGGCGG+AGG + chr4_3:73399088-73399107 Msa0661830:CDS 65.0%
!! GGTGGTGGATATGGCGGAGG+TGG + chr4_3:73399091-73399110 Msa0661830:CDS 65.0%
GGAGGTGGTGAACGTCGTGG+AGG + chr4_3:73399106-73399125 Msa0661830:CDS 65.0%
GGTGGTGAACGTCGTGGAGG+TGG + chr4_3:73399109-73399128 Msa0661830:CDS 65.0%
GGTGAACGTCGTGGAGGTGG+TGG + chr4_3:73399112-73399131 Msa0661830:CDS 65.0%
! GGATATGGTGGAGGTGGCGG+GGG + chr4_3:73399133-73399152 Msa0661830:intron 65.0%
TACGGAGGTGGTGACCGTCG+TGG + chr4_3:73399157-73399176 Msa0661830:intron 65.0%
! GGATATGGTGGAGGAGGCGG+GGG + chr4_3:73399190-73399209 Msa0661830:intron 65.0%
!! GGTTACGGAGGTGGTGGTGG+CGG + chr4_3:73399211-73399230 Msa0661830:intron 65.0%
!! GGACGTCGTGATGGTGGTGG+TGG + chr4_3:73399232-73399251 Msa0661830:intron 65.0%
GGTGGAGGTGGCTACGGAGA+TGG + chr4_3:73399259-73399278 Msa0661830:intron 65.0%
GGAGGTGGCTACGGAGATGG+TGG + chr4_3:73399262-73399281 Msa0661830:intron 65.0%
GGCTCCAGATACTCGAGGGG+CGG + chr4_3:73399283-73399302 Msa0661830:CDS 65.0%
! TACTCGAGGGGCGGTGATGG+CGG + chr4_3:73399292-73399311 Msa0661830:CDS 65.0%
GCTCAGAGTCGTGGCAGTGC+CGG + chr4_3:73399037-73399056 Msa0661830:CDS 65.0%
!! CGCGGAGGTGGTGGTGGATA+TGG + chr4_3:73399082-73399101 Msa0661830:CDS 65.0%
!! GGTGGTGGTGGATATGGCGG+AGG + chr4_3:73399088-73399107 Msa0661830:CDS 65.0%
!! GGTGGTGGATATGGCGGAGG+TGG + chr4_3:73399091-73399110 Msa0661830:CDS 65.0%
GGAGGTGGTGAACGTCGTGG+AGG + chr4_3:73399106-73399125 Msa0661830:CDS 65.0%
GGTGGTGAACGTCGTGGAGG+TGG + chr4_3:73399109-73399128 Msa0661830:CDS 65.0%
GGTGAACGTCGTGGAGGTGG+TGG + chr4_3:73399112-73399131 Msa0661830:CDS 65.0%
! GGATATGGTGGAGGTGGCGG+GGG + chr4_3:73399133-73399152 Msa0661830:intron 65.0%
TACGGAGGTGGTGACCGTCG+TGG + chr4_3:73399157-73399176 Msa0661830:intron 65.0%
! GGATATGGTGGAGGAGGCGG+GGG + chr4_3:73399190-73399209 Msa0661830:intron 65.0%
!! GGTTACGGAGGTGGTGGTGG+CGG + chr4_3:73399211-73399230 Msa0661830:intron 65.0%
!! GGACGTCGTGATGGTGGTGG+TGG + chr4_3:73399232-73399251 Msa0661830:intron 65.0%
GGTGGAGGTGGCTACGGAGA+TGG + chr4_3:73399259-73399278 Msa0661830:intron 65.0%
GGAGGTGGCTACGGAGATGG+TGG + chr4_3:73399262-73399281 Msa0661830:intron 65.0%
GGCTCCAGATACTCGAGGGG+CGG + chr4_3:73399283-73399302 Msa0661830:CDS 65.0%
! TACTCGAGGGGCGGTGATGG+CGG + chr4_3:73399292-73399311 Msa0661830:CDS 65.0%
! CAGAGTCGTGGCAGTGCCGG+AGG + chr4_3:73399040-73399059 Msa0661830:CDS 70.0%
! AGTCGTGGCAGTGCCGGAGG+CGG + chr4_3:73399043-73399062 Msa0661830:CDS 70.0%
!! GGCGGTGGTGGTGGATACCG+CGG + chr4_3:73399064-73399083 Msa0661830:CDS 70.0%
!! GGTGGTGGTGGATACCGCGG+AGG + chr4_3:73399067-73399086 Msa0661830:CDS 70.0%
!! GGTGGTGGATACCGCGGAGG+TGG + chr4_3:73399070-73399089 Msa0661830:CDS 70.0%
GGTGGATACCGCGGAGGTGG+TGG + chr4_3:73399073-73399092 Msa0661830:CDS 70.0%
! GGATACCGCGGAGGTGGTGG+TGG + chr4_3:73399076-73399095 Msa0661830:CDS 70.0%
GGCGGAGGTGGTGAACGTCG+TGG + chr4_3:73399103-73399122 Msa0661830:CDS 70.0%
!! GGTGGAGGTGGCGGGGGTTA+CGG + chr4_3:73399139-73399158 Msa0661830:intron 70.0%
GGAGGTGGTGACCGTCGTGG+AGG + chr4_3:73399160-73399179 Msa0661830:intron 70.0%
GGTGGTGACCGTCGTGGAGG+AGG + chr4_3:73399163-73399182 Msa0661830:intron 70.0%
GGTGACCGTCGTGGAGGAGG+TGG + chr4_3:73399166-73399185 Msa0661830:intron 70.0%
GACCGTCGTGGAGGAGGTGG+TGG + chr4_3:73399169-73399188 Msa0661830:intron 70.0%
GGTGGAGGAGGCGGGGGTTA+CGG + chr4_3:73399196-73399215 Msa0661830:intron 70.0%
! GGGGGTTACGGAGGTGGTGG+TGG + chr4_3:73399208-73399227 Msa0661830:intron 70.0%
!! GGTGGTGGCGGACGTCGTGA+TGG + chr4_3:73399223-73399242 Msa0661830:intron 70.0%
!! GGTGGCGGACGTCGTGATGG+TGG + chr4_3:73399226-73399245 Msa0661830:intron 70.0%
!! GGCGGACGTCGTGATGGTGG+TGG + chr4_3:73399229-73399248 Msa0661830:intron 70.0%
! CAGAGTCGTGGCAGTGCCGG+AGG + chr4_3:73399040-73399059 Msa0661830:CDS 70.0%
! AGTCGTGGCAGTGCCGGAGG+CGG + chr4_3:73399043-73399062 Msa0661830:CDS 70.0%
!! GGCGGTGGTGGTGGATACCG+CGG + chr4_3:73399064-73399083 Msa0661830:CDS 70.0%
!! GGTGGTGGTGGATACCGCGG+AGG + chr4_3:73399067-73399086 Msa0661830:CDS 70.0%
!! GGTGGTGGATACCGCGGAGG+TGG + chr4_3:73399070-73399089 Msa0661830:CDS 70.0%
GGTGGATACCGCGGAGGTGG+TGG + chr4_3:73399073-73399092 Msa0661830:CDS 70.0%
! GGATACCGCGGAGGTGGTGG+TGG + chr4_3:73399076-73399095 Msa0661830:CDS 70.0%
GGCGGAGGTGGTGAACGTCG+TGG + chr4_3:73399103-73399122 Msa0661830:CDS 70.0%
!! GGTGGAGGTGGCGGGGGTTA+CGG + chr4_3:73399139-73399158 Msa0661830:intron 70.0%
GGAGGTGGTGACCGTCGTGG+AGG + chr4_3:73399160-73399179 Msa0661830:intron 70.0%
GGTGGTGACCGTCGTGGAGG+AGG + chr4_3:73399163-73399182 Msa0661830:intron 70.0%
GGTGACCGTCGTGGAGGAGG+TGG + chr4_3:73399166-73399185 Msa0661830:intron 70.0%
GACCGTCGTGGAGGAGGTGG+TGG + chr4_3:73399169-73399188 Msa0661830:intron 70.0%
GGTGGAGGAGGCGGGGGTTA+CGG + chr4_3:73399196-73399215 Msa0661830:intron 70.0%
! GGGGGTTACGGAGGTGGTGG+TGG + chr4_3:73399208-73399227 Msa0661830:intron 70.0%
!! GGTGGTGGCGGACGTCGTGA+TGG + chr4_3:73399223-73399242 Msa0661830:intron 70.0%
!! GGTGGCGGACGTCGTGATGG+TGG + chr4_3:73399226-73399245 Msa0661830:intron 70.0%
!! GGCGGACGTCGTGATGGTGG+TGG + chr4_3:73399229-73399248 Msa0661830:intron 70.0%
TCCACCACCACCGCCGCCTC+CGG - chr4_3:73399059-73399078 None:intergenic 75.0%
!! GGAGGTGGCGGGGGTTACGG+AGG + chr4_3:73399142-73399161 Msa0661830:intron 75.0%
!! GGTGGCGGGGGTTACGGAGG+TGG + chr4_3:73399145-73399164 Msa0661830:intron 75.0%
GGAGGAGGCGGGGGTTACGG+AGG + chr4_3:73399199-73399218 Msa0661830:intron 75.0%
GGAGGCGGGGGTTACGGAGG+TGG + chr4_3:73399202-73399221 Msa0661830:intron 75.0%
GGCGGGGGTTACGGAGGTGG+TGG + chr4_3:73399148-73399167 Msa0661830:intron 75.0%
!! TCGAGGGGCGGTGATGGCGG+TGG + chr4_3:73399295-73399314 Msa0661830:CDS 75.0%
TCCACCACCACCGCCGCCTC+CGG - chr4_3:73399059-73399078 None:intergenic 75.0%
!! GGAGGTGGCGGGGGTTACGG+AGG + chr4_3:73399142-73399161 Msa0661830:intron 75.0%
!! GGTGGCGGGGGTTACGGAGG+TGG + chr4_3:73399145-73399164 Msa0661830:intron 75.0%
GGAGGAGGCGGGGGTTACGG+AGG + chr4_3:73399199-73399218 Msa0661830:intron 75.0%
GGAGGCGGGGGTTACGGAGG+TGG + chr4_3:73399202-73399221 Msa0661830:intron 75.0%
GGCGGGGGTTACGGAGGTGG+TGG + chr4_3:73399148-73399167 Msa0661830:intron 75.0%
!! TCGAGGGGCGGTGATGGCGG+TGG + chr4_3:73399295-73399314 Msa0661830:CDS 75.0%
!! CGTGGCAGTGCCGGAGGCGG+CGG + chr4_3:73399046-73399065 Msa0661830:CDS 80.0%
!! AGTGCCGGAGGCGGCGGTGG+TGG + chr4_3:73399052-73399071 Msa0661830:CDS 80.0%
!! CGTGGCAGTGCCGGAGGCGG+CGG + chr4_3:73399046-73399065 Msa0661830:CDS 80.0%
!! AGTGCCGGAGGCGGCGGTGG+TGG + chr4_3:73399052-73399071 Msa0661830:CDS 80.0%
!! GGCAGTGCCGGAGGCGGCGG+TGG + chr4_3:73399049-73399068 Msa0661830:CDS 85.0%
!! GCCGGAGGCGGCGGTGGTGG+TGG + chr4_3:73399055-73399074 Msa0661830:CDS 85.0%
!! GGCAGTGCCGGAGGCGGCGG+TGG + chr4_3:73399049-73399068 Msa0661830:CDS 85.0%
!! GCCGGAGGCGGCGGTGGTGG+TGG + chr4_3:73399055-73399074 Msa0661830:CDS 85.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 73398431 73399594 73398431 ID=Msa0661830;Name=Msa0661830
chr4_3 mRNA 73398431 73399594 73398431 ID=Msa0661830-mRNA-1;Parent=Msa0661830;Name=Msa0661830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=77|1|1|1|0.5|0.33|3|249|143
chr4_3 exon 73398431 73398615 73398431 ID=Msa0661830-mRNA-1:exon:22185;Parent=Msa0661830-mRNA-1
chr4_3 exon 73398902 73399145 73398902 ID=Msa0661830-mRNA-1:exon:22186;Parent=Msa0661830-mRNA-1
chr4_3 exon 73399266 73399594 73399266 ID=Msa0661830-mRNA-1:exon:22187;Parent=Msa0661830-mRNA-1
chr4_3 five_prime_UTR 73398431 73398507 73398431 ID=Msa0661830-mRNA-1:five_prime_utr;Parent=Msa0661830-mRNA-1
chr4_3 CDS 73398508 73398615 73398508 ID=Msa0661830-mRNA-1:cds;Parent=Msa0661830-mRNA-1
chr4_3 CDS 73398902 73399145 73398902 ID=Msa0661830-mRNA-1:cds;Parent=Msa0661830-mRNA-1
chr4_3 CDS 73399266 73399345 73399266 ID=Msa0661830-mRNA-1:cds;Parent=Msa0661830-mRNA-1
chr4_3 three_prime_UTR 73399346 73399594 73399346 ID=Msa0661830-mRNA-1:three_prime_utr;Parent=Msa0661830-mRNA-1
Gene Sequence

>Msa0661830

ATGGCGGAAGTTGAATACCGATGCTTTGTTGGTGGACTTGCATGGGCCACTGACAACGAAGCTCTTGAGAAAGCGTTTTCTTCCTTTGGTGAAATCGTCGAATCGAAGGTTATCACCGATCGTGAAACTGGAAGATCAAGAGGATTTGGATTTGTCACATTCTCTACGGAGCAGGCGATGAAAGATGCGATTGAAGGGATGAACGGCCAAGATCTTGATGGACGTAACATCACTGTGAATGAGGCTCAGAGTCGTGGCAGTGCCGGAGGCGGCGGTGGTGGTGGATACCGCGGAGGTGGTGGTGGATATGGCGGAGGTGGTGAACGTCGTGGAGGTGGTGGATATGGTGGAGGTGGCTACGGAGATGGTGGCTCCAGATACTCGAGGGGCGGTGATGGCGGTGGCTCTGACAGTAGAAACTGGAGGGAATAA
Protein sequence

>Msa0661830

MAEVEYRCFVGGLAWATDNEALEKAFSSFGEIVESKVITDRETGRSRGFGFVTFSTEQAMKDAIEGMNGQDLDGRNITVNEAQSRGSAGGGGGGGYRGGGGGYGGGGERRGGGGYGGGGYGDGGSRYSRGGDGGGSDSRNWRE*