Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105180 | XP_003622933.1 | 92.553 | 282 | 19 | 2 | 1 | 281 | 1 | 281 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105180 | sp|Q6ICB0|DESI1_HUMAN | 50.685 | 146 | 70 | 2 | 6 | 149 | 7 | 152 | 9.36e-43 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105180 | G7L195 | 92.553 | 282 | 19 | 2 | 1 | 281 | 1 | 281 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0798010 | Msa1105180 | 0.818536 | 1.862600e-52 | -8.615850e-47 |
| Msa1105180 | Msa1105190 | 0.863902 | 1.786122e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105180 | MtrunA17_Chr7g0237301 | 92.553 | 282 | 19 | 2 | 1 | 281 | 1 | 281 | 0.0 | 530 |
| Msa1105180 | MtrunA17_Chr4g0055821 | 33.858 | 127 | 72 | 2 | 8 | 128 | 24 | 144 | 3.36e-14 | 70.1 |
| Msa1105180 | MtrunA17_Chr5g0399541 | 35.433 | 127 | 70 | 2 | 8 | 128 | 25 | 145 | 8.63e-14 | 68.9 |
| Msa1105180 | MtrunA17_Chr1g0149791 | 30.675 | 163 | 84 | 6 | 8 | 150 | 19 | 172 | 5.22e-13 | 66.6 |
| Msa1105180 | MtrunA17_Chr4g0063261 | 26.519 | 181 | 112 | 4 | 8 | 182 | 31 | 196 | 8.05e-13 | 66.2 |
| Msa1105180 | MtrunA17_Chr3g0137121 | 29.457 | 129 | 75 | 3 | 8 | 128 | 19 | 139 | 3.32e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105180 | AT3G07090.2 | 62.807 | 285 | 79 | 3 | 1 | 279 | 1 | 264 | 1.31e-127 | 363 |
| Msa1105180 | AT3G07090.1 | 62.807 | 285 | 79 | 3 | 1 | 279 | 1 | 264 | 1.31e-127 | 363 |
| Msa1105180 | AT4G17486.1 | 32.283 | 127 | 74 | 2 | 8 | 128 | 28 | 148 | 9.47e-12 | 63.5 |
| Msa1105180 | AT4G17486.2 | 32.283 | 127 | 74 | 2 | 8 | 128 | 28 | 148 | 1.52e-11 | 62.8 |
| Msa1105180 | AT5G25170.1 | 31.783 | 129 | 72 | 3 | 8 | 128 | 20 | 140 | 1.80e-11 | 62.8 |
| Msa1105180 | AT2G25190.1 | 32.283 | 127 | 74 | 3 | 8 | 128 | 19 | 139 | 2.16e-11 | 62.8 |
| Msa1105180 | AT5G47310.1 | 32.258 | 124 | 72 | 2 | 8 | 125 | 30 | 147 | 3.17e-11 | 62.4 |
Find 72 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACACAGGAATTGTGGTTTA+TGG | 0.212137 | 7_3:+43378285 | Msa1105180:CDS |
| TAGGTGCATTTGAACTCTTT+TGG | 0.262398 | 7_3:-43379463 | None:intergenic |
| TATGGCAATGAGTACTTCTT+TGG | 0.263772 | 7_3:+43378303 | Msa1105180:CDS |
| GGACTGTTCATAACTTCATT+AGG | 0.279110 | 7_3:-43378561 | None:intergenic |
| ATTGTTTGCAGGAGGGTTAC+AGG | 0.291924 | 7_3:+43377562 | Msa1105180:intron |
| TAACTCAACCACCGAGAAAA+AGG | 0.297479 | 7_3:+43379484 | Msa1105180:CDS |
| CAAAGAGTTTGCTGCAATAA+TGG | 0.302763 | 7_3:+43379658 | Msa1105180:CDS |
| TACATTTCAAACACATCCTT+TGG | 0.308893 | 7_3:-43378408 | None:intergenic |
| GTAAGCAAGCTATAGGTTTC+AGG | 0.314641 | 7_3:-43378459 | None:intergenic |
| GTCTCTAAATTCTGAATCAT+TGG | 0.348174 | 7_3:-43379353 | None:intergenic |
| GACTGTTCATAACTTCATTA+GGG | 0.364610 | 7_3:-43378560 | None:intergenic |
| TTCCACAAGTACCACAATTC+AGG | 0.398164 | 7_3:+43379396 | Msa1105180:CDS |
| TTTGCTGCAATAATGGCAAC+TGG | 0.421812 | 7_3:+43379665 | Msa1105180:CDS |
| TGTGTTTGAAATGTATTTGC+AGG | 0.423912 | 7_3:+43378416 | Msa1105180:CDS |
| CCACTCAAAGTGGTAGAGTT+AGG | 0.445501 | 7_3:+43378372 | Msa1105180:CDS |
| ACAACACCATTGGGTTGTGC+TGG | 0.446457 | 7_3:-43379587 | None:intergenic |
| GGTGTTGTAAAAGATCCTTT+AGG | 0.459388 | 7_3:+43379602 | Msa1105180:CDS |
| TTGTTCCTTGCATCACCTAA+AGG | 0.460520 | 7_3:-43379617 | None:intergenic |
| AACTCTGTGACACAGACATC+TGG | 0.462593 | 7_3:-43379748 | None:intergenic |
| GGGAGCTGAAGAATATAATC+AGG | 0.463108 | 7_3:-43378540 | None:intergenic |
| GGCAATGAGTACTTCTTTGG+TGG | 0.474336 | 7_3:+43378306 | Msa1105180:CDS |
| AGAGAGAGAGATTACTATGA+AGG | 0.476769 | 7_3:-43376836 | None:intergenic |
| TAGAAGGTGATAGATGCAAC+TGG | 0.477242 | 7_3:+43376675 | None:intergenic |
| GGAAAGCGGTGTTAAATAAA+CGG | 0.478884 | 7_3:-43376753 | None:intergenic |
| CCTGCCGGATCAACACCATA+TGG | 0.479097 | 7_3:+43378345 | Msa1105180:CDS |
| TTAGAGACAACATTAAAATC+CGG | 0.484565 | 7_3:+43379368 | Msa1105180:CDS |
| AAAGCTGTCGAGCAAGTCCT+TGG | 0.493866 | 7_3:-43377611 | None:intergenic |
| ACTTGCTACTAGAAGAGTTA+TGG | 0.494098 | 7_3:+43379715 | Msa1105180:CDS |
| GGAAAACCATCGAAGGCATA+TGG | 0.498523 | 7_3:+43377649 | Msa1105180:CDS |
| ACTTTGAGTGGAGTTCCATA+TGG | 0.501349 | 7_3:-43378360 | None:intergenic |
| GGCATACAACACTTGCCTGC+CGG | 0.516741 | 7_3:+43378330 | Msa1105180:CDS |
| CTTCAGGCACACAGGAATTG+TGG | 0.517638 | 7_3:+43378278 | Msa1105180:intron |
| CCCAACAACGAAGTAGCAAA+AGG | 0.522754 | 7_3:+43379512 | Msa1105180:CDS |
| AATAAACGGACAAATTGCAT+TGG | 0.524492 | 7_3:-43376739 | None:intergenic |
| GAAGTTATGAACAGTCCAAT+GGG | 0.524842 | 7_3:+43378567 | Msa1105180:CDS |
| GTCACTGCAATTGTTTGTGG+TGG | 0.526457 | 7_3:+43379832 | Msa1105180:three_prime_UTR |
| GTTGTGAGTAAGCAAGCTAT+AGG | 0.531319 | 7_3:-43378466 | None:intergenic |
| AATGAGTACTTCTTTGGTGG+TGG | 0.531477 | 7_3:+43378309 | Msa1105180:CDS |
| CACTCTCTGACTCTGTTGTG+TGG | 0.538704 | 7_3:+43379887 | Msa1105180:three_prime_UTR |
| CACTCACCATATGCCTTCGA+TGG | 0.540917 | 7_3:-43377655 | None:intergenic |
| TGGTACTTGTGGAACACCGC+CGG | 0.545171 | 7_3:-43379387 | None:intergenic |
| AGTTGTTAAAGCACGAAACA+AGG | 0.546478 | 7_3:-43376775 | None:intergenic |
| AGTTCCATATGGTGTTGATC+CGG | 0.548327 | 7_3:-43378349 | None:intergenic |
| GAAGCAGGACTCACTGTGGA+AGG | 0.554794 | 7_3:-43379419 | None:intergenic |
| CCATATGGTGTTGATCCGGC+AGG | 0.558159 | 7_3:-43378345 | None:intergenic |
| AATGTTTATGATCTAAGCCA+AGG | 0.559572 | 7_3:+43377594 | Msa1105180:CDS |
| TTGTTTGCAGGAGGGTTACA+GGG | 0.561828 | 7_3:+43377563 | Msa1105180:intron |
| TGAAGTTATGAACAGTCCAA+TGG | 0.563966 | 7_3:+43378566 | Msa1105180:CDS |
| ACTGAGGCAAAATTTGAAGC+AGG | 0.564757 | 7_3:-43379434 | None:intergenic |
| GGCCTGAATTGTGGTACTTG+TGG | 0.574049 | 7_3:-43379398 | None:intergenic |
| CTGAAGAATATAATCAGGAA+TGG | 0.576738 | 7_3:-43378535 | None:intergenic |
| AGGTGTTACTCATGTTCCAA+AGG | 0.578160 | 7_3:+43378392 | Msa1105180:CDS |
| CCTAACTCTACCACTTTGAG+TGG | 0.583133 | 7_3:-43378372 | None:intergenic |
| TTTAGGTGATGCAAGGAACA+AGG | 0.587830 | 7_3:+43379619 | Msa1105180:CDS |
| AATGTCACTGCAATTGTTTG+TGG | 0.590922 | 7_3:+43379829 | Msa1105180:three_prime_UTR |
| AAGATCCTTTAGGTGATGCA+AGG | 0.600112 | 7_3:+43379612 | Msa1105180:CDS |
| GTTGTTAAAGCACGAAACAA+GGG | 0.602571 | 7_3:-43376774 | None:intergenic |
| TCAACTGAACCACATGGCTG+AGG | 0.607794 | 7_3:+43377460 | Msa1105180:exon |
| TGTTTATACTTCAGGCACAC+AGG | 0.608555 | 7_3:+43378270 | Msa1105180:intron |
| TTACAGAAAAGAGAACCCAT+TGG | 0.609026 | 7_3:-43378582 | None:intergenic |
| ATATGGAACTCCACTCAAAG+TGG | 0.639802 | 7_3:+43378362 | Msa1105180:CDS |
| TTGCTGCAATAATGGCAACT+GGG | 0.650479 | 7_3:+43379666 | Msa1105180:CDS |
| TTTCATTCAACTGAACCACA+TGG | 0.657030 | 7_3:+43377454 | Msa1105180:exon |
| AAGCACGAAACAAGGGAAAG+CGG | 0.658740 | 7_3:-43376767 | None:intergenic |
| GAGACAACATTAAAATCCGG+CGG | 0.667630 | 7_3:+43379371 | Msa1105180:CDS |
| AGAAGAGTTATGGAAAGACA+TGG | 0.676961 | 7_3:+43379725 | Msa1105180:CDS |
| ACTGTGGAAGGCCTGAATTG+TGG | 0.694621 | 7_3:-43379407 | None:intergenic |
| AGATTACTATGAAGGAGACG+AGG | 0.695262 | 7_3:-43376828 | None:intergenic |
| ATTTGAAGCAGGACTCACTG+TGG | 0.706003 | 7_3:-43379423 | None:intergenic |
| TAGGTTTCAGGCAAGTACCG+CGG | 0.732071 | 7_3:-43378447 | None:intergenic |
| TACCACATACCTCAGCCATG+TGG | 0.735609 | 7_3:-43377469 | None:intergenic |
| ATTTGCAGGAAATCAGTCCG+CGG | 0.754428 | 7_3:+43378430 | Msa1105180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAAAGAAAATTATC+TGG | + | chr7_3:43377061-43377080 | Msa1105180:intron | 10.0% |
| !!! | TTTTTAAAAGAAAATTATCT+GGG | + | chr7_3:43377062-43377081 | Msa1105180:intron | 10.0% |
| !!! | TTGTTTTAAGATATTTTTTT+TGG | + | chr7_3:43378903-43378922 | Msa1105180:intron | 10.0% |
| !!! | ATTTTATTTATCATGATTCA+TGG | + | chr7_3:43377525-43377544 | Msa1105180:intron | 15.0% |
| !!! | ATTGATAATAAATTGATAAG+TGG | + | chr7_3:43377888-43377907 | Msa1105180:intron | 15.0% |
| !!! | GTATATTTTGGTTATAATTT+CGG | + | chr7_3:43378241-43378260 | Msa1105180:intron | 15.0% |
| !!! | TATATTTTGGTTATAATTTC+GGG | + | chr7_3:43378242-43378261 | Msa1105180:intron | 15.0% |
| !!! | TTTTAAGTGAATCTATATTT+TGG | + | chr7_3:43380007-43380026 | Msa1105180:intron | 15.0% |
| !!! | AAAGTTTGGATTTTTAGAAT+TGG | + | chr7_3:43376968-43376987 | Msa1105180:intron | 20.0% |
| !!! | AAGTTTGGATTTTTAGAATT+GGG | + | chr7_3:43376969-43376988 | Msa1105180:intron | 20.0% |
| !!! | AAAGTGCAGTTTTTTTTTAA+TGG | + | chr7_3:43377030-43377049 | Msa1105180:intron | 20.0% |
| !!! | AAGTGCAGTTTTTTTTTAAT+GGG | + | chr7_3:43377031-43377050 | Msa1105180:intron | 20.0% |
| !!! | TGTGAATTATGTATTTTTGT+TGG | + | chr7_3:43377141-43377160 | Msa1105180:intron | 20.0% |
| !! | TTATTGTGTTCTAATAATGA+TGG | + | chr7_3:43377194-43377213 | Msa1105180:intron | 20.0% |
| !!! | TAATAATGATGGAAATTTTG+AGG | + | chr7_3:43377205-43377224 | Msa1105180:intron | 20.0% |
| !!! | AATAATGATGGAAATTTTGA+GGG | + | chr7_3:43377206-43377225 | Msa1105180:intron | 20.0% |
| !!! | TGTTTTTTTTTCTTCTAATG+TGG | + | chr7_3:43377361-43377380 | Msa1105180:intron | 20.0% |
| !! | TTAATACTTTAATTGTTTGC+AGG | + | chr7_3:43377551-43377570 | Msa1105180:intron | 20.0% |
| !! | ATATCATTGTTATCAAATAG+TGG | - | chr7_3:43378215-43378234 | None:intergenic | 20.0% |
| !!! | TTGATAACAATGATATTGAA+AGG | + | chr7_3:43378219-43378238 | Msa1105180:intron | 20.0% |
| !!! | TGATATTGAAAGGTATATTT+TGG | + | chr7_3:43378229-43378248 | Msa1105180:intron | 20.0% |
| !! | ATTACTATTATACGATACTA+AGG | - | chr7_3:43378750-43378769 | None:intergenic | 20.0% |
| !!! | ACTTTTGTTCTTGAATTTTA+TGG | + | chr7_3:43379926-43379945 | Msa1105180:three_prime_UTR | 20.0% |
| ! | AAGAAACAACAATCCAAAAT+TGG | - | chr7_3:43376904-43376923 | None:intergenic | 25.0% |
| ! | GTGATGAATGTATTAAAGTT+TGG | + | chr7_3:43376954-43376973 | Msa1105180:intron | 25.0% |
| !!! | GAAAATTATCTGGGTTTTAA+TGG | + | chr7_3:43377071-43377090 | Msa1105180:intron | 25.0% |
| ! | ATGAACATTATACTATGGTA+CGG | - | chr7_3:43377703-43377722 | None:intergenic | 25.0% |
| ! | AGATCATGAACATTATACTA+TGG | - | chr7_3:43377708-43377727 | None:intergenic | 25.0% |
| ! | GTATAATGTTCATGATCTAA+TGG | + | chr7_3:43377710-43377729 | Msa1105180:intron | 25.0% |
| !!! | ATTTTAGAATTACAGATCAG+AGG | + | chr7_3:43377749-43377768 | Msa1105180:intron | 25.0% |
| !! | CAAAGCATTAACATAATACA+CGG | + | chr7_3:43377831-43377850 | Msa1105180:intron | 25.0% |
| !! | TTGTACTAAATTGAGTATTG+CGG | + | chr7_3:43378133-43378152 | Msa1105180:intron | 25.0% |
| !! | GTTTAATTTCTGTCATATGA+TGG | + | chr7_3:43378170-43378189 | Msa1105180:intron | 25.0% |
| ! | ACCAATAACTATAGACAATT+TGG | + | chr7_3:43378841-43378860 | Msa1105180:intron | 25.0% |
| ! | TCCAAATTGTCTATAGTTAT+TGG | - | chr7_3:43378845-43378864 | None:intergenic | 25.0% |
| ! | AGACAATTTGGAAATACTTT+AGG | + | chr7_3:43378853-43378872 | Msa1105180:intron | 25.0% |
| ! | CTACTTATAAACTCATTATC+CGG | - | chr7_3:43379072-43379091 | None:intergenic | 25.0% |
| ! | AAGCTAAGGATGTATTTATA+CGG | - | chr7_3:43379196-43379215 | None:intergenic | 25.0% |
| ! | TTAGAGACAACATTAAAATC+CGG | + | chr7_3:43379368-43379387 | Msa1105180:CDS | 25.0% |
| !! | TTTGTTCTTGAATTTTATGG+CGG | + | chr7_3:43379929-43379948 | Msa1105180:three_prime_UTR | 25.0% |
| AATAAACGGACAAATTGCAT+TGG | - | chr7_3:43376742-43376761 | None:intergenic | 30.0% | |
| ! | TTGTGAATTTCCTCCAATTT+TGG | + | chr7_3:43376888-43376907 | Msa1105180:intron | 30.0% |
| AAACAACAATCCAAAATTGG+AGG | - | chr7_3:43376901-43376920 | None:intergenic | 30.0% | |
| !!! | GATTGTTGTTTCTTTTGCAA+AGG | + | chr7_3:43376910-43376929 | Msa1105180:intron | 30.0% |
| ! | AGAATTGGGTTTTTCTCAAT+TGG | + | chr7_3:43376983-43377002 | Msa1105180:intron | 30.0% |
| ! | GAATTGGGTTTTTCTCAATT+GGG | + | chr7_3:43376984-43377003 | Msa1105180:intron | 30.0% |
| ! | GATGTGTTGTTCTTTGAAAA+GGG | + | chr7_3:43377093-43377112 | Msa1105180:intron | 30.0% |
| !! | ATGTGGTTTTTGATTCTGTT+AGG | + | chr7_3:43377378-43377397 | Msa1105180:intron | 30.0% |
| ATCACTGCAAGTATCTAATA+TGG | - | chr7_3:43377507-43377526 | None:intergenic | 30.0% | |
| ATACTTTAATTGTTTGCAGG+AGG | + | chr7_3:43377554-43377573 | Msa1105180:intron | 30.0% | |
| TACTTTAATTGTTTGCAGGA+GGG | + | chr7_3:43377555-43377574 | Msa1105180:intron | 30.0% | |
| AATGTTTATGATCTAAGCCA+AGG | + | chr7_3:43377594-43377613 | Msa1105180:CDS | 30.0% | |
| !!! | TGTTTGTTTCCCTTTGTTTT+AGG | + | chr7_3:43377676-43377695 | Msa1105180:intron | 30.0% |
| TCTATGTTGTGTTGAATGAA+TGG | + | chr7_3:43377783-43377802 | Msa1105180:intron | 30.0% | |
| TAGAATGTAACTATGTGTGT+TGG | + | chr7_3:43377917-43377936 | Msa1105180:intron | 30.0% | |
| AGAATGTAACTATGTGTGTT+GGG | + | chr7_3:43377918-43377937 | Msa1105180:intron | 30.0% | |
| ATGTACATTCAAGATACAAG+AGG | - | chr7_3:43378021-43378040 | None:intergenic | 30.0% | |
| ! | TGTACTAAATTGAGTATTGC+GGG | + | chr7_3:43378134-43378153 | Msa1105180:intron | 30.0% |
| TACATTTCAAACACATCCTT+TGG | - | chr7_3:43378411-43378430 | None:intergenic | 30.0% | |
| ! | TGTGTTTGAAATGTATTTGC+AGG | + | chr7_3:43378416-43378435 | Msa1105180:CDS | 30.0% |
| ! | CAATGAAGTTGCTCAATTTT+TGG | + | chr7_3:43378503-43378522 | Msa1105180:CDS | 30.0% |
| CTGAAGAATATAATCAGGAA+TGG | - | chr7_3:43378538-43378557 | None:intergenic | 30.0% | |
| GACTGTTCATAACTTCATTA+GGG | - | chr7_3:43378563-43378582 | None:intergenic | 30.0% | |
| CTCACTCAATCAAATCTTTA+TGG | + | chr7_3:43378801-43378820 | Msa1105180:intron | 30.0% | |
| CATACTGTATATGTCCAATA+TGG | + | chr7_3:43379003-43379022 | Msa1105180:intron | 30.0% | |
| CGGATAATGAGTTTATAAGT+AGG | + | chr7_3:43379070-43379089 | Msa1105180:intron | 30.0% | |
| CATACATTCTTCCAAATTTC+CGG | + | chr7_3:43379135-43379154 | Msa1105180:intron | 30.0% | |
| TTTGTTCTGCTTAATACTGT+CGG | + | chr7_3:43379299-43379318 | Msa1105180:intron | 30.0% | |
| GTCTCTAAATTCTGAATCAT+TGG | - | chr7_3:43379356-43379375 | None:intergenic | 30.0% | |
| ! | GGAAAGCGGTGTTAAATAAA+CGG | - | chr7_3:43376756-43376775 | None:intergenic | 35.0% |
| GTTGTTAAAGCACGAAACAA+GGG | - | chr7_3:43376777-43376796 | None:intergenic | 35.0% | |
| AGTTGTTAAAGCACGAAACA+AGG | - | chr7_3:43376778-43376797 | None:intergenic | 35.0% | |
| AGAGAGAGAGATTACTATGA+AGG | - | chr7_3:43376839-43376858 | None:intergenic | 35.0% | |
| ! | GGATGTGTTGTTCTTTGAAA+AGG | + | chr7_3:43377092-43377111 | Msa1105180:intron | 35.0% |
| GTATGAGAAACTGGAATTGT+TGG | + | chr7_3:43377239-43377258 | Msa1105180:intron | 35.0% | |
| TTTCATTCAACTGAACCACA+TGG | + | chr7_3:43377454-43377473 | Msa1105180:exon | 35.0% | |
| AGAGGAAAGAAACAAACCTA+TGG | - | chr7_3:43378003-43378022 | None:intergenic | 35.0% | |
| ! | GGGTATTGTGTTTATACTTC+AGG | + | chr7_3:43378262-43378281 | Msa1105180:intron | 35.0% |
| TATGGCAATGAGTACTTCTT+TGG | + | chr7_3:43378303-43378322 | Msa1105180:CDS | 35.0% | |
| !!! | GAAGTTGCTCAATTTTTGGT+TGG | + | chr7_3:43378507-43378526 | Msa1105180:CDS | 35.0% |
| GGACTGTTCATAACTTCATT+AGG | - | chr7_3:43378564-43378583 | None:intergenic | 35.0% | |
| TGAAGTTATGAACAGTCCAA+TGG | + | chr7_3:43378566-43378585 | Msa1105180:CDS | 35.0% | |
| GAAGTTATGAACAGTCCAAT+GGG | + | chr7_3:43378567-43378586 | Msa1105180:CDS | 35.0% | |
| TTACAGAAAAGAGAACCCAT+TGG | - | chr7_3:43378585-43378604 | None:intergenic | 35.0% | |
| GATACTATCATACGCTACTA+AGG | - | chr7_3:43378680-43378699 | None:intergenic | 35.0% | |
| CATATACAGTATGACTAGAG+AGG | - | chr7_3:43378996-43379015 | None:intergenic | 35.0% | |
| ! | AGGTGCATTTGAACTCTTTT+GGG | - | chr7_3:43379465-43379484 | None:intergenic | 35.0% |
| ! | TAGGTGCATTTGAACTCTTT+TGG | - | chr7_3:43379466-43379485 | None:intergenic | 35.0% |
| ! | GGATCTTTTACAACACCATT+GGG | - | chr7_3:43379599-43379618 | None:intergenic | 35.0% |
| ! | AGGATCTTTTACAACACCAT+TGG | - | chr7_3:43379600-43379619 | None:intergenic | 35.0% |
| ! | GGTGTTGTAAAAGATCCTTT+AGG | + | chr7_3:43379602-43379621 | Msa1105180:CDS | 35.0% |
| !! | CAAAGAGTTTGCTGCAATAA+TGG | + | chr7_3:43379658-43379677 | Msa1105180:CDS | 35.0% |
| ! | ACTTGCTACTAGAAGAGTTA+TGG | + | chr7_3:43379715-43379734 | Msa1105180:CDS | 35.0% |
| AGAAGAGTTATGGAAAGACA+TGG | + | chr7_3:43379725-43379744 | Msa1105180:CDS | 35.0% | |
| AATGTCACTGCAATTGTTTG+TGG | + | chr7_3:43379829-43379848 | Msa1105180:three_prime_UTR | 35.0% | |
| !! | CTTGAATTTTATGGCGGAAA+TGG | + | chr7_3:43379935-43379954 | Msa1105180:three_prime_UTR | 35.0% |
| ! | GGAATATATGCATTTGAAGC+TGG | + | chr7_3:43379956-43379975 | Msa1105180:intron | 35.0% |
| AGATTACTATGAAGGAGACG+AGG | - | chr7_3:43376831-43376850 | None:intergenic | 40.0% | |
| GGATTTACGTACTCCATTCT+GGG | + | chr7_3:43377005-43377024 | Msa1105180:intron | 40.0% | |
| ! | AACTGCACTTTTACCCAGAA+TGG | - | chr7_3:43377021-43377040 | None:intergenic | 40.0% |
| CTGTCTTGTGTATGAGAAAC+TGG | + | chr7_3:43377230-43377249 | Msa1105180:intron | 40.0% | |
| !! | ACAGCTTTCAACGTCGTTTT+TGG | + | chr7_3:43377626-43377645 | Msa1105180:CDS | 40.0% |
| !!! | CAGCTTTCAACGTCGTTTTT+GGG | + | chr7_3:43377627-43377646 | Msa1105180:CDS | 40.0% |
| !!! | AGCTTTCAACGTCGTTTTTG+GGG | + | chr7_3:43377628-43377647 | Msa1105180:CDS | 40.0% |
| !! | TTTTTGGGGAAAACCATCGA+AGG | + | chr7_3:43377642-43377661 | Msa1105180:CDS | 40.0% |
| TGGTACGGACCTAAAACAAA+GGG | - | chr7_3:43377688-43377707 | None:intergenic | 40.0% | |
| ATGGTACGGACCTAAAACAA+AGG | - | chr7_3:43377689-43377708 | None:intergenic | 40.0% | |
| ! | CTGCAGATTAAAGGTGTGTT+CGG | - | chr7_3:43377959-43377978 | None:intergenic | 40.0% |
| GAACACACCTTTAATCTGCA+GGG | + | chr7_3:43377958-43377977 | Msa1105180:intron | 40.0% | |
| ! | GTGCTACATAGCTTTACCAT+AGG | + | chr7_3:43377984-43378003 | Msa1105180:intron | 40.0% |
| GAATGTACATGCCAACATCT+TGG | + | chr7_3:43378031-43378050 | Msa1105180:intron | 40.0% | |
| TGGCAGATCATAGAAGATAG+TGG | + | chr7_3:43378076-43378095 | Msa1105180:intron | 40.0% | |
| TGTTTATACTTCAGGCACAC+AGG | + | chr7_3:43378270-43378289 | Msa1105180:intron | 40.0% | |
| CACACAGGAATTGTGGTTTA+TGG | + | chr7_3:43378285-43378304 | Msa1105180:CDS | 40.0% | |
| AATGAGTACTTCTTTGGTGG+TGG | + | chr7_3:43378309-43378328 | Msa1105180:CDS | 40.0% | |
| !! | AGTTCCATATGGTGTTGATC+CGG | - | chr7_3:43378352-43378371 | None:intergenic | 40.0% |
| ACTTTGAGTGGAGTTCCATA+TGG | - | chr7_3:43378363-43378382 | None:intergenic | 40.0% | |
| ATATGGAACTCCACTCAAAG+TGG | + | chr7_3:43378362-43378381 | Msa1105180:CDS | 40.0% | |
| !! | AGGTGTTACTCATGTTCCAA+AGG | + | chr7_3:43378392-43378411 | Msa1105180:CDS | 40.0% |
| GTAAGCAAGCTATAGGTTTC+AGG | - | chr7_3:43378462-43378481 | None:intergenic | 40.0% | |
| GTTGTGAGTAAGCAAGCTAT+AGG | - | chr7_3:43378469-43378488 | None:intergenic | 40.0% | |
| GGGAGCTGAAGAATATAATC+AGG | - | chr7_3:43378543-43378562 | None:intergenic | 40.0% | |
| !! | TGATTCGAGTGAAGTGTTGT+AGG | - | chr7_3:43378615-43378634 | None:intergenic | 40.0% |
| ATAACCATGTCTACAAGCAG+CGG | - | chr7_3:43378726-43378745 | None:intergenic | 40.0% | |
| AACTGTTAAGAGTTCCGCAT+AGG | + | chr7_3:43378950-43378969 | Msa1105180:intron | 40.0% | |
| ! | ATATGTCCAATATGGCCTTG+AGG | + | chr7_3:43379011-43379030 | Msa1105180:intron | 40.0% |
| ! | TATGTCCAATATGGCCTTGA+GGG | + | chr7_3:43379012-43379031 | Msa1105180:intron | 40.0% |
| ! | AGTCCTACATTGATGACACA+TGG | + | chr7_3:43379046-43379065 | Msa1105180:intron | 40.0% |
| GCACTACAAAAACGACTTGT+AGG | - | chr7_3:43379108-43379127 | None:intergenic | 40.0% | |
| AGCAAAGTGATGCAAAGCTA+AGG | - | chr7_3:43379210-43379229 | None:intergenic | 40.0% | |
| GAGACAACATTAAAATCCGG+CGG | + | chr7_3:43379371-43379390 | Msa1105180:CDS | 40.0% | |
| TTCCACAAGTACCACAATTC+AGG | + | chr7_3:43379396-43379415 | Msa1105180:CDS | 40.0% | |
| ! | ACTGAGGCAAAATTTGAAGC+AGG | - | chr7_3:43379437-43379456 | None:intergenic | 40.0% |
| ! | TGCATTTGAACTCTTTTGGG+TGG | - | chr7_3:43379462-43379481 | None:intergenic | 40.0% |
| ! | TTTTTCTCGGTGGTTGAGTT+AGG | - | chr7_3:43379485-43379504 | None:intergenic | 40.0% |
| TAACTCAACCACCGAGAAAA+AGG | + | chr7_3:43379484-43379503 | Msa1105180:CDS | 40.0% | |
| ! | GTTGGGAATAGCCTTTTTCT+CGG | - | chr7_3:43379498-43379517 | None:intergenic | 40.0% |
| !! | CCTTTTGCTACTTCGTTGTT+GGG | - | chr7_3:43379515-43379534 | None:intergenic | 40.0% |
| AAGATCCTTTAGGTGATGCA+AGG | + | chr7_3:43379612-43379631 | Msa1105180:CDS | 40.0% | |
| TTGTTCCTTGCATCACCTAA+AGG | - | chr7_3:43379620-43379639 | None:intergenic | 40.0% | |
| TTTAGGTGATGCAAGGAACA+AGG | + | chr7_3:43379619-43379638 | Msa1105180:CDS | 40.0% | |
| TTTGCTGCAATAATGGCAAC+TGG | + | chr7_3:43379665-43379684 | Msa1105180:CDS | 40.0% | |
| TTGCTGCAATAATGGCAACT+GGG | + | chr7_3:43379666-43379685 | Msa1105180:CDS | 40.0% | |
| AAGCACGAAACAAGGGAAAG+CGG | - | chr7_3:43376770-43376789 | None:intergenic | 45.0% | |
| GGGATTTACGTACTCCATTC+TGG | + | chr7_3:43377004-43377023 | Msa1105180:intron | 45.0% | |
| ATTGTTTGCAGGAGGGTTAC+AGG | + | chr7_3:43377562-43377581 | Msa1105180:intron | 45.0% | |
| TTGTTTGCAGGAGGGTTACA+GGG | + | chr7_3:43377563-43377582 | Msa1105180:intron | 45.0% | |
| ! | GGAAAACCATCGAAGGCATA+TGG | + | chr7_3:43377649-43377668 | Msa1105180:CDS | 45.0% |
| CGAACACACCTTTAATCTGC+AGG | + | chr7_3:43377957-43377976 | Msa1105180:intron | 45.0% | |
| ACACCTTTAATCTGCAGGGT+TGG | + | chr7_3:43377962-43377981 | Msa1105180:intron | 45.0% | |
| GTTCAGCACAACCAAGATGT+TGG | - | chr7_3:43378045-43378064 | None:intergenic | 45.0% | |
| GTGCTGAACGATGTTGTCTA+TGG | + | chr7_3:43378056-43378075 | Msa1105180:intron | 45.0% | |
| GGCAATGAGTACTTCTTTGG+TGG | + | chr7_3:43378306-43378325 | Msa1105180:CDS | 45.0% | |
| CCTAACTCTACCACTTTGAG+TGG | - | chr7_3:43378375-43378394 | None:intergenic | 45.0% | |
| CCACTCAAAGTGGTAGAGTT+AGG | + | chr7_3:43378372-43378391 | Msa1105180:CDS | 45.0% | |
| ATTTGCAGGAAATCAGTCCG+CGG | + | chr7_3:43378430-43378449 | Msa1105180:CDS | 45.0% | |
| ATAACCCTGTCTACAAGCAG+CGG | - | chr7_3:43378656-43378675 | None:intergenic | 45.0% | |
| TAGGATTCGACAACCGCTAT+CGG | + | chr7_3:43378969-43378988 | Msa1105180:intron | 45.0% | |
| ! | ATGTCCAATATGGCCTTGAG+GGG | + | chr7_3:43379013-43379032 | Msa1105180:intron | 45.0% |
| ! | CTACATTGATGACACATGGC+CGG | + | chr7_3:43379050-43379069 | Msa1105180:intron | 45.0% |
| ACGAGACACTACCGGAAATT+TGG | - | chr7_3:43379149-43379168 | None:intergenic | 45.0% | |
| ! | ATTTGAAGCAGGACTCACTG+TGG | - | chr7_3:43379426-43379445 | None:intergenic | 45.0% |
| CCCAACAACGAAGTAGCAAA+AGG | + | chr7_3:43379512-43379531 | Msa1105180:CDS | 45.0% | |
| !! | GCCTTTTGCTACTTCGTTGT+TGG | - | chr7_3:43379516-43379535 | None:intergenic | 45.0% |
| GAAAAACCAGCACAACCCAA+TGG | + | chr7_3:43379581-43379600 | Msa1105180:CDS | 45.0% | |
| AACTCTGTGACACAGACATC+TGG | - | chr7_3:43379751-43379770 | None:intergenic | 45.0% | |
| GTCACTGCAATTGTTTGTGG+TGG | + | chr7_3:43379832-43379851 | Msa1105180:three_prime_UTR | 45.0% | |
| ! | GCATTTGAAGCTGGCTAAAG+TGG | + | chr7_3:43379965-43379984 | Msa1105180:intron | 45.0% |
| ! | TTTGAAGCTGGCTAAAGTGG+AGG | + | chr7_3:43379968-43379987 | Msa1105180:intron | 45.0% |
| TCAACTGAACCACATGGCTG+AGG | + | chr7_3:43377460-43377479 | Msa1105180:exon | 50.0% | |
| AACCACATGGCTGAGGTATG+TGG | + | chr7_3:43377467-43377486 | Msa1105180:intron | 50.0% | |
| TACCACATACCTCAGCCATG+TGG | - | chr7_3:43377472-43377491 | None:intergenic | 50.0% | |
| AAAGCTGTCGAGCAAGTCCT+TGG | - | chr7_3:43377614-43377633 | None:intergenic | 50.0% | |
| CACTCACCATATGCCTTCGA+TGG | - | chr7_3:43377658-43377677 | None:intergenic | 50.0% | |
| GCACCAACCCTGCAGATTAA+AGG | - | chr7_3:43377968-43377987 | None:intergenic | 50.0% | |
| CTTCAGGCACACAGGAATTG+TGG | + | chr7_3:43378278-43378297 | Msa1105180:intron | 50.0% | |
| ! | TAGGTTTCAGGCAAGTACCG+CGG | - | chr7_3:43378450-43378469 | None:intergenic | 50.0% |
| AGCGGTTGTCGAATCCTATG+CGG | - | chr7_3:43378967-43378986 | None:intergenic | 50.0% | |
| TGACTAGAGAGGTCCGATAG+CGG | - | chr7_3:43378985-43379004 | None:intergenic | 50.0% | |
| ! | TGTCCAATATGGCCTTGAGG+GGG | + | chr7_3:43379014-43379033 | Msa1105180:intron | 50.0% |
| ATACCCCCTCAAGGCCATAT+TGG | - | chr7_3:43379020-43379039 | None:intergenic | 50.0% | |
| ACTCTTCACATACCCCCTCA+AGG | - | chr7_3:43379029-43379048 | None:intergenic | 50.0% | |
| CGGCCATGTGTCATCAATGT+AGG | - | chr7_3:43379052-43379071 | None:intergenic | 50.0% | |
| CTGATGACACGAGACACTAC+CGG | - | chr7_3:43379157-43379176 | None:intergenic | 50.0% | |
| GGCCTGAATTGTGGTACTTG+TGG | - | chr7_3:43379401-43379420 | None:intergenic | 50.0% | |
| ACTGTGGAAGGCCTGAATTG+TGG | - | chr7_3:43379410-43379429 | None:intergenic | 50.0% | |
| !! | ACTCTTTTGGGTGGTGACTG+AGG | - | chr7_3:43379453-43379472 | None:intergenic | 50.0% |
| ! | GGGAATAGCCTTTTTCTCGG+TGG | - | chr7_3:43379495-43379514 | None:intergenic | 50.0% |
| ! | ACAACACCATTGGGTTGTGC+TGG | - | chr7_3:43379590-43379609 | None:intergenic | 50.0% |
| CACTCTCTGACTCTGTTGTG+TGG | + | chr7_3:43379887-43379906 | Msa1105180:three_prime_UTR | 50.0% | |
| GGCATACAACACTTGCCTGC+CGG | + | chr7_3:43378330-43378349 | Msa1105180:CDS | 55.0% | |
| !! | CCATATGGTGTTGATCCGGC+AGG | - | chr7_3:43378348-43378367 | None:intergenic | 55.0% |
| CCTGCCGGATCAACACCATA+TGG | + | chr7_3:43378345-43378364 | Msa1105180:CDS | 55.0% | |
| CTGTCCGCTGCTTGTAGACA+GGG | + | chr7_3:43378649-43378668 | Msa1105180:intron | 55.0% | |
| CTGTCCGCTGCTTGTAGACA+TGG | + | chr7_3:43378649-43378668 | Msa1105180:intron | 55.0% | |
| TGGTACTTGTGGAACACCGC+CGG | - | chr7_3:43379390-43379409 | None:intergenic | 55.0% | |
| GAAGCAGGACTCACTGTGGA+AGG | - | chr7_3:43379422-43379441 | None:intergenic | 55.0% | |
| GCTGTCCGCTGCTTGTAGAC+AGG | + | chr7_3:43378648-43378667 | Msa1105180:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 43376676 | 43380048 | 43376676 | ID=Msa1105180;Name=Msa1105180 |
| chr7_3 | mRNA | 43376676 | 43380048 | 43376676 | ID=Msa1105180-mRNA-1;Parent=Msa1105180;Name=Msa1105180-mRNA-1;_AED=0.08;_eAED=0.08;_QI=241|1|1|1|0.6|0.33|6|209|281 |
| chr7_3 | exon | 43376676 | 43376843 | 43376676 | ID=Msa1105180-mRNA-1:exon:8873;Parent=Msa1105180-mRNA-1 |
| chr7_3 | exon | 43377400 | 43377481 | 43377400 | ID=Msa1105180-mRNA-1:exon:8874;Parent=Msa1105180-mRNA-1 |
| chr7_3 | exon | 43377573 | 43377670 | 43377573 | ID=Msa1105180-mRNA-1:exon:8875;Parent=Msa1105180-mRNA-1 |
| chr7_3 | exon | 43378284 | 43378600 | 43378284 | ID=Msa1105180-mRNA-1:exon:8876;Parent=Msa1105180-mRNA-1 |
| chr7_3 | exon | 43379351 | 43379955 | 43379351 | ID=Msa1105180-mRNA-1:exon:8877;Parent=Msa1105180-mRNA-1 |
| chr7_3 | exon | 43380023 | 43380048 | 43380023 | ID=Msa1105180-mRNA-1:exon:8878;Parent=Msa1105180-mRNA-1 |
| chr7_3 | five_prime_UTR | 43376676 | 43376843 | 43376676 | ID=Msa1105180-mRNA-1:five_prime_utr;Parent=Msa1105180-mRNA-1 |
| chr7_3 | five_prime_UTR | 43377400 | 43377472 | 43377400 | ID=Msa1105180-mRNA-1:five_prime_utr;Parent=Msa1105180-mRNA-1 |
| chr7_3 | CDS | 43377473 | 43377481 | 43377473 | ID=Msa1105180-mRNA-1:cds;Parent=Msa1105180-mRNA-1 |
| chr7_3 | CDS | 43377573 | 43377670 | 43377573 | ID=Msa1105180-mRNA-1:cds;Parent=Msa1105180-mRNA-1 |
| chr7_3 | CDS | 43378284 | 43378600 | 43378284 | ID=Msa1105180-mRNA-1:cds;Parent=Msa1105180-mRNA-1 |
| chr7_3 | CDS | 43379351 | 43379772 | 43379351 | ID=Msa1105180-mRNA-1:cds;Parent=Msa1105180-mRNA-1 |
| chr7_3 | three_prime_UTR | 43379773 | 43379955 | 43379773 | ID=Msa1105180-mRNA-1:three_prime_utr;Parent=Msa1105180-mRNA-1 |
| chr7_3 | three_prime_UTR | 43380023 | 43380048 | 43380023 | ID=Msa1105180-mRNA-1:three_prime_utr;Parent=Msa1105180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
