Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798010 | XP_003611751.2 | 93.750 | 288 | 17 | 1 | 1 | 287 | 1 | 288 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798010 | sp|P22335|HSF24_SOLPE | 55.911 | 313 | 100 | 10 | 1 | 287 | 1 | 301 | 1.23e-95 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798010 | I3SQU1 | 93.750 | 288 | 17 | 1 | 1 | 287 | 1 | 288 | 0.0 | 540 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0798010 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006510 | Msa0798010 | 0.834708 | 2.564262e-56 | -8.615850e-47 |
| Msa0037320 | Msa0798010 | 0.825791 | 3.866766e-54 | -8.615850e-47 |
| Msa0042550 | Msa0798010 | 0.803827 | 2.894422e-49 | -8.615850e-47 |
| Msa0120530 | Msa0798010 | -0.804080 | 2.564496e-49 | -8.615850e-47 |
| Msa0641340 | Msa0798010 | 0.815427 | 9.294650e-52 | -8.615850e-47 |
| Msa0653440 | Msa0798010 | 0.803167 | 3.966768e-49 | -8.615850e-47 |
| Msa0697570 | Msa0798010 | 0.806908 | 6.546558e-50 | -8.615850e-47 |
| Msa0708310 | Msa0798010 | 0.803668 | 3.123077e-49 | -8.615850e-47 |
| Msa0714990 | Msa0798010 | 0.901662 | 2.136577e-78 | -8.615850e-47 |
| Msa0757020 | Msa0798010 | 0.895775 | 6.955302e-76 | -8.615850e-47 |
| Msa0798010 | Msa0808100 | 0.809408 | 1.920767e-50 | -8.615850e-47 |
| Msa0798010 | Msa0834180 | 0.801258 | 9.802899e-49 | -8.615850e-47 |
| Msa0798010 | Msa0836650 | 0.879219 | 1.489289e-69 | -8.615850e-47 |
| Msa0798010 | Msa0837870 | 0.813306 | 2.736814e-51 | -8.615850e-47 |
| Msa0798010 | Msa0898320 | 0.805343 | 1.397747e-49 | -8.615850e-47 |
| Msa0798010 | Msa0899970 | 0.813709 | 2.231329e-51 | -8.615850e-47 |
| Msa0798010 | Msa0921420 | 0.810474 | 1.132429e-50 | -8.615850e-47 |
| Msa0798010 | Msa0965080 | 0.804730 | 1.877445e-49 | -8.615850e-47 |
| Msa0798010 | Msa0965290 | 0.811671 | 6.230745e-51 | -8.615850e-47 |
| Msa0798010 | Msa0999680 | 0.807157 | 5.798600e-50 | -8.615850e-47 |
| Msa0798010 | Msa1043120 | 0.818913 | 1.529391e-52 | -8.615850e-47 |
| Msa0798010 | Msa1068580 | 0.803649 | 3.152537e-49 | -8.615850e-47 |
| Msa0798010 | Msa1098270 | 0.810754 | 9.851074e-51 | -8.615850e-47 |
| Msa0798010 | Msa1105180 | 0.818536 | 1.862600e-52 | -8.615850e-47 |
| Msa0798010 | Msa1105190 | 0.800179 | 1.627486e-48 | -8.615850e-47 |
| Msa0798010 | Msa1114180 | 0.804240 | 2.375564e-49 | -8.615850e-47 |
| Msa0798010 | Msa1162060 | 0.814959 | 1.180940e-51 | -8.615850e-47 |
| Msa0798010 | Msa1177560 | 0.806279 | 8.885542e-50 | -8.615850e-47 |
| Msa0798010 | Msa1236440 | 0.835602 | 1.525308e-56 | -8.615850e-47 |
| Msa0798010 | Msa1246700 | 0.805360 | 1.386152e-49 | -8.615850e-47 |
| Msa0798010 | Msa1260680 | 0.805583 | 1.244799e-49 | -8.615850e-47 |
| Msa0798010 | Msa1277670 | 0.823910 | 1.073749e-53 | -8.615850e-47 |
| Msa0798010 | Msa1343250 | 0.803730 | 3.032408e-49 | -8.615850e-47 |
| Msa0798010 | Msa1349450 | 0.811593 | 6.476964e-51 | -8.615850e-47 |
| Msa0798010 | Msa1353890 | 0.808323 | 3.276339e-50 | -8.615850e-47 |
| Msa0798010 | Msa1360020 | 0.800128 | 1.666592e-48 | -8.615850e-47 |
| Msa0798010 | Msa1372150 | 0.811584 | 6.506716e-51 | -8.615850e-47 |
| Msa0798010 | Msa1388090 | 0.805079 | 1.587275e-49 | -8.615850e-47 |
| Msa0798010 | Msa1411410 | 0.827868 | 1.233712e-54 | -8.615850e-47 |
| Msa0798010 | Msa1424630 | 0.847547 | 1.079662e-59 | -8.615850e-47 |
| Msa0798010 | Msa1426710 | 0.811391 | 7.166249e-51 | -8.615850e-47 |
| Msa0798010 | Msa1430550 | 0.821350 | 4.231278e-53 | -8.615850e-47 |
| Msa0798010 | Msa1458340 | 0.803738 | 3.020345e-49 | -8.615850e-47 |
| Msa0136550 | Msa0798010 | 0.806999 | 6.261034e-50 | -8.615850e-47 |
| Msa0178040 | Msa0798010 | 0.825257 | 5.174326e-54 | -8.615850e-47 |
| Msa0178510 | Msa0798010 | 0.808976 | 2.376883e-50 | -8.615850e-47 |
| Msa0186320 | Msa0798010 | 0.800756 | 1.241209e-48 | -8.615850e-47 |
| Msa0187830 | Msa0798010 | 0.824876 | 6.363519e-54 | -8.615850e-47 |
| Msa0201570 | Msa0798010 | 0.849336 | 3.452292e-60 | -8.615850e-47 |
| Msa0235880 | Msa0798010 | 0.801969 | 7.005185e-49 | -8.615850e-47 |
| Msa0372460 | Msa0798010 | 0.815888 | 7.340616e-52 | -8.615850e-47 |
| Msa0408340 | Msa0798010 | 0.816997 | 4.143939e-52 | -8.615850e-47 |
| Msa0429090 | Msa0798010 | 0.823640 | 1.242631e-53 | -8.615850e-47 |
| Msa0432670 | Msa0798010 | 0.808177 | 3.521214e-50 | -8.615850e-47 |
| Msa0475500 | Msa0798010 | 0.832543 | 8.905083e-56 | -8.615850e-47 |
| Msa0240270 | Msa0798010 | 0.830011 | 3.732904e-55 | -8.615850e-47 |
| Msa0269560 | Msa0798010 | 0.805018 | 1.634173e-49 | -8.615850e-47 |
| Msa0271550 | Msa0798010 | 0.812476 | 4.159900e-51 | -8.615850e-47 |
| Msa0277410 | Msa0798010 | 0.816639 | 4.984313e-52 | -8.615850e-47 |
| Msa0314000 | Msa0798010 | 0.805263 | 1.452527e-49 | -8.615850e-47 |
| Msa0361330 | Msa0798010 | 0.804759 | 1.851381e-49 | -8.615850e-47 |
| Msa0501410 | Msa0798010 | 0.819057 | 1.418219e-52 | -8.615850e-47 |
| Msa0512980 | Msa0798010 | 0.843461 | 1.381651e-58 | -8.615850e-47 |
| Msa0574600 | Msa0798010 | 0.801147 | 1.032548e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798010 | MtrunA17_Chr5g0402291 | 93.750 | 288 | 17 | 1 | 1 | 287 | 1 | 288 | 0.0 | 540 |
| Msa0798010 | MtrunA17_Chr8g0375041 | 49.811 | 265 | 103 | 6 | 1 | 255 | 1 | 245 | 2.97e-76 | 233 |
| Msa0798010 | MtrunA17_Chr5g0397881 | 45.353 | 269 | 119 | 7 | 2 | 252 | 17 | 275 | 1.10e-64 | 206 |
| Msa0798010 | MtrunA17_Chr3g0134031 | 42.366 | 262 | 118 | 6 | 2 | 234 | 17 | 274 | 1.57e-56 | 186 |
| Msa0798010 | MtrunA17_Chr1g0203601 | 45.455 | 209 | 76 | 3 | 2 | 194 | 11 | 197 | 5.79e-52 | 172 |
| Msa0798010 | MtrunA17_Chr6g0472421 | 44.495 | 218 | 83 | 2 | 2 | 194 | 26 | 230 | 2.03e-51 | 172 |
| Msa0798010 | MtrunA17_Chr5g0441531 | 40.164 | 244 | 117 | 6 | 2 | 235 | 18 | 242 | 5.00e-49 | 163 |
| Msa0798010 | MtrunA17_Chr7g0257331 | 43.850 | 187 | 81 | 1 | 3 | 189 | 16 | 178 | 3.67e-48 | 160 |
| Msa0798010 | MtrunA17_Chr5g0410881 | 47.514 | 181 | 69 | 3 | 1 | 181 | 24 | 178 | 2.28e-44 | 157 |
| Msa0798010 | MtrunA17_Chr7g0260331 | 69.474 | 95 | 29 | 0 | 6 | 100 | 46 | 140 | 8.80e-44 | 152 |
| Msa0798010 | MtrunA17_Chr6g0467041 | 58.407 | 113 | 44 | 1 | 8 | 117 | 21 | 133 | 1.00e-42 | 149 |
| Msa0798010 | MtrunA17_Chr8g0379701 | 58.716 | 109 | 45 | 0 | 5 | 113 | 8 | 116 | 2.69e-41 | 147 |
| Msa0798010 | MtrunA17_Chr4g0071051 | 45.506 | 178 | 57 | 4 | 6 | 183 | 98 | 235 | 1.11e-40 | 145 |
| Msa0798010 | MtrunA17_Chr1g0185131 | 63.636 | 99 | 36 | 0 | 7 | 105 | 30 | 128 | 3.71e-40 | 142 |
| Msa0798010 | MtrunA17_Chr4g0039891 | 41.500 | 200 | 85 | 4 | 9 | 208 | 12 | 179 | 5.49e-39 | 142 |
| Msa0798010 | MtrunA17_Chr8g0378061 | 56.757 | 111 | 45 | 1 | 10 | 117 | 23 | 133 | 9.85e-39 | 142 |
| Msa0798010 | MtrunA17_Chr3g0135831 | 56.481 | 108 | 45 | 1 | 6 | 113 | 43 | 148 | 9.19e-38 | 137 |
| Msa0798010 | MtrunA17_Chr2g0284481 | 39.894 | 188 | 80 | 4 | 9 | 193 | 15 | 172 | 1.73e-37 | 136 |
| Msa0798010 | MtrunA17_Chr2g0330821 | 53.846 | 117 | 51 | 1 | 6 | 119 | 76 | 192 | 3.03e-37 | 135 |
| Msa0798010 | MtrunA17_Chr1g0204741 | 35.784 | 204 | 117 | 3 | 5 | 208 | 36 | 225 | 3.80e-37 | 134 |
| Msa0798010 | MtrunA17_Chr6g0485571 | 58.824 | 102 | 42 | 0 | 1 | 102 | 3 | 104 | 6.39e-37 | 134 |
| Msa0798010 | MtrunA17_Chr4g0047421 | 36.139 | 202 | 103 | 5 | 6 | 203 | 30 | 209 | 4.09e-35 | 125 |
| Msa0798010 | MtrunA17_Chr8g0392001 | 44.382 | 178 | 65 | 5 | 8 | 181 | 21 | 168 | 2.00e-34 | 128 |
| Msa0798010 | MtrunA17_Chr1g0179321 | 62.121 | 66 | 25 | 0 | 3 | 68 | 43 | 108 | 9.84e-23 | 90.5 |
| Msa0798010 | MtrunA17_Chr4g0023771 | 55.385 | 65 | 29 | 0 | 2 | 66 | 8 | 72 | 2.71e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798010 | AT4G36990.1 | 50.333 | 300 | 113 | 8 | 2 | 287 | 7 | 284 | 3.50e-82 | 249 |
| Msa0798010 | AT5G62020.1 | 49.756 | 205 | 97 | 3 | 2 | 202 | 16 | 218 | 1.20e-55 | 182 |
| Msa0798010 | AT4G11660.1 | 42.222 | 270 | 115 | 8 | 2 | 233 | 52 | 318 | 6.88e-54 | 179 |
| Msa0798010 | AT1G46264.1 | 44.444 | 216 | 91 | 5 | 4 | 197 | 29 | 237 | 1.18e-53 | 178 |
| Msa0798010 | AT2G41690.1 | 45.989 | 187 | 89 | 3 | 7 | 190 | 38 | 215 | 3.45e-48 | 161 |
| Msa0798010 | AT1G32330.1 | 48.066 | 181 | 60 | 3 | 6 | 181 | 34 | 185 | 6.36e-47 | 164 |
| Msa0798010 | AT1G32330.2 | 48.619 | 181 | 59 | 4 | 6 | 181 | 34 | 185 | 6.91e-47 | 164 |
| Msa0798010 | AT4G17750.1 | 69.388 | 98 | 30 | 0 | 5 | 102 | 48 | 145 | 2.85e-44 | 157 |
| Msa0798010 | AT2G26150.1 | 40.306 | 196 | 93 | 2 | 5 | 194 | 40 | 217 | 3.91e-42 | 148 |
| Msa0798010 | AT2G26150.4 | 40.306 | 196 | 93 | 2 | 5 | 194 | 40 | 217 | 3.91e-42 | 148 |
| Msa0798010 | AT3G22830.1 | 38.318 | 214 | 124 | 3 | 5 | 217 | 57 | 263 | 4.78e-42 | 149 |
| Msa0798010 | AT3G02990.1 | 40.625 | 256 | 113 | 8 | 5 | 258 | 19 | 237 | 6.57e-41 | 147 |
| Msa0798010 | AT4G13980.1 | 62.000 | 100 | 38 | 0 | 10 | 109 | 24 | 123 | 6.77e-41 | 147 |
| Msa0798010 | AT3G24520.1 | 38.426 | 216 | 83 | 4 | 8 | 216 | 16 | 188 | 1.24e-39 | 141 |
| Msa0798010 | AT5G16820.1 | 69.565 | 92 | 28 | 0 | 9 | 100 | 27 | 118 | 2.25e-39 | 144 |
| Msa0798010 | AT5G16820.2 | 69.565 | 92 | 28 | 0 | 9 | 100 | 27 | 118 | 2.25e-39 | 144 |
| Msa0798010 | AT5G43840.1 | 56.881 | 109 | 47 | 0 | 5 | 113 | 15 | 123 | 8.70e-39 | 137 |
| Msa0798010 | AT3G51910.1 | 58.654 | 104 | 42 | 1 | 6 | 109 | 26 | 128 | 4.09e-38 | 135 |
| Msa0798010 | AT5G03720.2 | 42.246 | 187 | 82 | 3 | 9 | 189 | 55 | 221 | 4.95e-38 | 139 |
| Msa0798010 | AT5G03720.1 | 42.246 | 187 | 82 | 3 | 9 | 189 | 55 | 221 | 4.95e-38 | 139 |
| Msa0798010 | AT5G54070.1 | 60.870 | 92 | 36 | 0 | 8 | 99 | 70 | 161 | 8.86e-37 | 134 |
| Msa0798010 | AT3G63350.1 | 57.732 | 97 | 41 | 0 | 3 | 99 | 22 | 118 | 5.41e-35 | 127 |
| Msa0798010 | AT4G18880.1 | 55.172 | 116 | 52 | 0 | 5 | 120 | 11 | 126 | 2.12e-33 | 126 |
| Msa0798010 | AT1G67970.1 | 57.273 | 110 | 44 | 2 | 8 | 116 | 18 | 125 | 2.70e-33 | 125 |
| Msa0798010 | AT5G45710.3 | 53.279 | 122 | 50 | 2 | 5 | 119 | 9 | 130 | 7.80e-33 | 124 |
| Msa0798010 | AT5G45710.1 | 53.279 | 122 | 50 | 2 | 5 | 119 | 9 | 130 | 7.80e-33 | 124 |
| Msa0798010 | AT4G18870.1 | 44.211 | 95 | 53 | 0 | 2 | 96 | 139 | 233 | 2.65e-22 | 94.4 |
| Msa0798010 | AT4G18870.1 | 45.745 | 94 | 46 | 3 | 5 | 96 | 9 | 99 | 5.89e-20 | 87.8 |
| Msa0798010 | AT1G77570.1 | 40.909 | 88 | 47 | 3 | 10 | 93 | 27 | 113 | 1.08e-13 | 67.4 |
Find 78 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTCGTTTCTTCCTTTC+TGG | 0.040301 | 5_3:+10514608 | Msa0798010:five_prime_UTR |
| CCACATCTAAGAAATTAATT+TGG | 0.180721 | 5_3:-10514534 | None:intergenic |
| ATATTCTCCTTCAATGTCTT+TGG | 0.217872 | 5_3:-10514461 | None:intergenic |
| TCCTTTCTGGTTTCTATTGT+TGG | 0.230031 | 5_3:+10514621 | Msa0798010:five_prime_UTR |
| AGAACCAACGTCACTTATTA+AGG | 0.240591 | 5_3:+10514394 | Msa0798010:five_prime_UTR |
| GAAAGCTTGTGCCAGATAAA+TGG | 0.251473 | 5_3:+10516388 | Msa0798010:CDS |
| ATAATTCCCCATACGAAAAT+AGG | 0.260531 | 5_3:-10514499 | None:intergenic |
| TTAGATGTGGCTTAAGCTAA+TGG | 0.287412 | 5_3:+10514547 | Msa0798010:five_prime_UTR |
| TTTGCAAATTCCCATTTATC+TGG | 0.289664 | 5_3:-10516399 | None:intergenic |
| TTGTTGTGCTTAAAATATTT+AGG | 0.304096 | 5_3:-10514974 | None:intergenic |
| CTGGTTTCTATTGTTGGGAT+TGG | 0.306018 | 5_3:+10514627 | Msa0798010:five_prime_UTR |
| CCTTTCTGGTTTCTATTGTT+GGG | 0.310708 | 5_3:+10514622 | Msa0798010:five_prime_UTR |
| TGGTTTCTATTGTTGGGATT+GGG | 0.347860 | 5_3:+10514628 | Msa0798010:five_prime_UTR |
| CCATGATGATAACTAATTAC+TGG | 0.347869 | 5_3:-10517129 | None:intergenic |
| GTTTGAAATTGTTTGGTGTT+TGG | 0.347895 | 5_3:+10516856 | Msa0798010:CDS |
| GGATCCTGCTCCGTCGTTGC+CGG | 0.352068 | 5_3:-10516550 | None:intergenic |
| ATTTATCTGGCACAAGCTTT+CGG | 0.357484 | 5_3:-10516386 | None:intergenic |
| TATTCTCCTTCAATGTCTTT+GGG | 0.359473 | 5_3:-10514460 | None:intergenic |
| CCGTCGTTGCCGGAGTTTGA+TGG | 0.360239 | 5_3:-10516540 | None:intergenic |
| CACATCTAAGAAATTAATTT+GGG | 0.362304 | 5_3:-10514533 | None:intergenic |
| CGTGTGGAACCGGTTTCATT+TGG | 0.394345 | 5_3:+10514336 | Msa0798010:five_prime_UTR |
| GTTGTTGTTTCCACTGATCC+AGG | 0.401148 | 5_3:-10516603 | None:intergenic |
| ATTATGCGATCGATTTGATC+TGG | 0.408543 | 5_3:-10516765 | None:intergenic |
| AGAGATTGTTTGAAATTGTT+TGG | 0.415249 | 5_3:+10516849 | Msa0798010:CDS |
| TCTATTGGTACGTGTGGAAC+CGG | 0.422455 | 5_3:+10514326 | Msa0798010:five_prime_UTR |
| CTTGAACACATGAAAGAAAC+AGG | 0.422879 | 5_3:-10517177 | None:intergenic |
| CATATCTATCATCAATCTAT+TGG | 0.424088 | 5_3:+10514311 | Msa0798010:five_prime_UTR |
| GAGGCCCACCATAGCTCAAT+TGG | 0.429636 | 5_3:-10516935 | None:intergenic |
| CATTATTGACCAAATGAAAC+CGG | 0.432836 | 5_3:-10514345 | None:intergenic |
| TGAGTTGGAGGAAGAGGTTG+AGG | 0.450915 | 5_3:-10516574 | None:intergenic |
| TGAAACCTTGAGTTGTGAAT+TGG | 0.453054 | 5_3:+10516680 | Msa0798010:CDS |
| AAAGCTTGTGCCAGATAAAT+GGG | 0.453955 | 5_3:+10516389 | Msa0798010:CDS |
| CCAAATTAATTTCTTAGATG+TGG | 0.468547 | 5_3:+10514534 | Msa0798010:five_prime_UTR |
| CTCGATAAGTTAACACATTG+AGG | 0.469755 | 5_3:-10516630 | None:intergenic |
| AATGTCGCAGCGGTCGGCGC+CGG | 0.469760 | 5_3:+10514826 | Msa0798010:exon |
| TAATTAGTTATCATCATGGT+TGG | 0.472302 | 5_3:+10517133 | Msa0798010:three_prime_UTR |
| CCAACGTCACTTATTAAGGT+TGG | 0.477628 | 5_3:+10514398 | Msa0798010:five_prime_UTR |
| TGGAGAGTTGTCATTGATGC+TGG | 0.489530 | 5_3:-10516520 | None:intergenic |
| ACAACCGTCGTCACAACCCC+TGG | 0.491280 | 5_3:+10516485 | Msa0798010:CDS |
| TCTAAAAGACAATTTAAATG+TGG | 0.501767 | 5_3:+10516740 | Msa0798010:CDS |
| CTAAAAGACAATTTAAATGT+GGG | 0.505450 | 5_3:+10516741 | Msa0798010:CDS |
| ATCTGAAATGTGGCAAGCTA+AGG | 0.505904 | 5_3:-10517048 | None:intergenic |
| CCAGTAATTAGTTATCATCA+TGG | 0.508360 | 5_3:+10517129 | Msa0798010:three_prime_UTR |
| TATCGGTGAGGAGGTGTTTG+TGG | 0.509612 | 5_3:-10516440 | None:intergenic |
| AACTCCGGCAACGACGGAGC+AGG | 0.525429 | 5_3:+10516546 | Msa0798010:CDS |
| GTTGGAGGAAGAGGTTGAGG+TGG | 0.526221 | 5_3:-10516571 | None:intergenic |
| GTCTCGCCCAAAGACATTGA+AGG | 0.526921 | 5_3:+10514454 | Msa0798010:five_prime_UTR |
| TTGTTGTTTCCACTGATCCA+GGG | 0.529235 | 5_3:-10516602 | None:intergenic |
| TGGTGGGCCTCGAGCTAAAG+TGG | 0.533968 | 5_3:+10516947 | Msa0798010:CDS |
| AATTAGTTATCATCATGGTT+GGG | 0.534493 | 5_3:+10517134 | Msa0798010:three_prime_UTR |
| ATATTAGTTGAAGGGTTGAT+CGG | 0.535066 | 5_3:+10514798 | Msa0798010:five_prime_UTR |
| ACGTGCCAATTCACAACTCA+AGG | 0.543571 | 5_3:-10516685 | None:intergenic |
| CGACGGATGATGTGATATCA+TGG | 0.550146 | 5_3:+10514891 | Msa0798010:CDS |
| GTTGGTGAAGTTGAAGAAAG+TGG | 0.559506 | 5_3:+10516825 | Msa0798010:CDS |
| CATCAATCTATTGGTACGTG+TGG | 0.562918 | 5_3:+10514320 | Msa0798010:five_prime_UTR |
| AAAGAAACAATGCGAAGAGT+TGG | 0.565353 | 5_3:+10516710 | Msa0798010:CDS |
| GCTTCCAGGGGTTGTGACGA+CGG | 0.568930 | 5_3:-10516489 | None:intergenic |
| TTGTGACGACGGTTGTGAGA+TGG | 0.569926 | 5_3:-10516478 | None:intergenic |
| GACAACTCTCCATCAAACTC+CGG | 0.573360 | 5_3:+10516531 | Msa0798010:CDS |
| CCATCAAACTCCGGCAACGA+CGG | 0.576121 | 5_3:+10516540 | Msa0798010:CDS |
| GTTGTGAACATGATGAAAAG+TGG | 0.578148 | 5_3:+10517002 | Msa0798010:CDS |
| TTTGTTGAAGACGTATCAGA+TGG | 0.581317 | 5_3:+10514856 | Msa0798010:CDS |
| GAAATAAGCAATAAGAAGAG+AGG | 0.597803 | 5_3:+10516903 | Msa0798010:CDS |
| CCCAACAATAGAAACCAGAA+AGG | 0.597826 | 5_3:-10514622 | None:intergenic |
| TTGTTACCCACTTTAGCTCG+AGG | 0.613620 | 5_3:-10516954 | None:intergenic |
| GGCGTTTGATATCGGTGAGG+AGG | 0.622756 | 5_3:-10516449 | None:intergenic |
| GAATCTGTTCAAAATGCGGT+TGG | 0.630106 | 5_3:+10516807 | Msa0798010:CDS |
| GTGATATCATGGAGTGAGAG+TGG | 0.634834 | 5_3:+10514902 | Msa0798010:CDS |
| GAAGACCAATTGAGCTATGG+TGG | 0.636764 | 5_3:+10516930 | Msa0798010:CDS |
| CCAACCTTAATAAGTGACGT+TGG | 0.639053 | 5_3:-10514398 | None:intergenic |
| GGTGGGCCTCGAGCTAAAGT+GGG | 0.645793 | 5_3:+10516948 | Msa0798010:CDS |
| TGTGAAGACCAATTGAGCTA+TGG | 0.646584 | 5_3:+10516927 | Msa0798010:CDS |
| GTTGAAGACGTATCAGATGG+TGG | 0.648048 | 5_3:+10514859 | Msa0798010:CDS |
| TTGTGAATCTGTTCAAAATG+CGG | 0.658508 | 5_3:+10516803 | Msa0798010:CDS |
| GAACATGATGAAAAGTGGCA+AGG | 0.659767 | 5_3:+10517007 | Msa0798010:CDS |
| GCAAACGAAAATTTCAAACG+AGG | 0.682155 | 5_3:+10516417 | Msa0798010:CDS |
| TGCGGCGTTTGATATCGGTG+AGG | 0.683931 | 5_3:-10516452 | None:intergenic |
| AAGACCAATTGAGCTATGGT+GGG | 0.693450 | 5_3:+10516931 | Msa0798010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATTATTTTTATTTTAA+TGG | + | chr5_3:10515371-10515390 | Msa0798010:intron | 0.0% |
| !! | GTAATAAAATAACAAAAATA+TGG | - | chr5_3:10514271-10514290 | None:intergenic | 10.0% |
| !!! | AATTATTTTTTAGCAATTTT+TGG | + | chr5_3:10515158-10515177 | Msa0798010:intron | 10.0% |
| !!! | ATTATTTTTTAGCAATTTTT+GGG | + | chr5_3:10515159-10515178 | Msa0798010:intron | 10.0% |
| !!! | TATTTTAACAAATAGTAAAT+AGG | - | chr5_3:10515531-10515550 | None:intergenic | 10.0% |
| !! | AAATTATCCTTATTAATTAT+TGG | + | chr5_3:10516066-10516085 | Msa0798010:intron | 10.0% |
| !!! | TAGTTTTAAAAGTAATAATT+CGG | + | chr5_3:10516090-10516109 | Msa0798010:intron | 10.0% |
| !! | TAGAAAAATATATTAGTTGA+AGG | + | chr5_3:10514789-10514808 | Msa0798010:five_prime_UTR | 15.0% |
| !! | AGAAAAATATATTAGTTGAA+GGG | + | chr5_3:10514790-10514809 | Msa0798010:five_prime_UTR | 15.0% |
| !! | AATTATCTTAAACTAATCAA+AGG | - | chr5_3:10515103-10515122 | None:intergenic | 15.0% |
| !!! | TTATTTTTTAGCAATTTTTG+GGG | + | chr5_3:10515160-10515179 | Msa0798010:intron | 15.0% |
| !!! | TGTTCAAATATTTTGATTTT+AGG | + | chr5_3:10515413-10515432 | Msa0798010:intron | 15.0% |
| !! | AATTATAATACACTTTCATA+GGG | - | chr5_3:10515833-10515852 | None:intergenic | 15.0% |
| !! | AAATTATAATACACTTTCAT+AGG | - | chr5_3:10515834-10515853 | None:intergenic | 15.0% |
| !! | AAACTAACCAATAATTAATA+AGG | - | chr5_3:10516076-10516095 | None:intergenic | 15.0% |
| !! | AGAAAAAATTATTATTGCAT+TGG | + | chr5_3:10516153-10516172 | Msa0798010:intron | 15.0% |
| !!! | TAAATTTTATATCTGAAATG+TGG | - | chr5_3:10517061-10517080 | None:intergenic | 15.0% |
| !!! | TTTTGATTTAATTGTAATCT+AGG | + | chr5_3:10517209-10517228 | Msa0798010:three_prime_UTR | 15.0% |
| !! | AATAACAAAAATATGGTTGT+TGG | - | chr5_3:10514264-10514283 | None:intergenic | 20.0% |
| !! | CACATCTAAGAAATTAATTT+GGG | - | chr5_3:10514536-10514555 | None:intergenic | 20.0% |
| !! | TTGTTGTGCTTAAAATATTT+AGG | - | chr5_3:10514977-10514996 | None:intergenic | 20.0% |
| !! | TCTAAAAGACAATTTAAATG+TGG | + | chr5_3:10516740-10516759 | Msa0798010:CDS | 20.0% |
| !! | CTAAAAGACAATTTAAATGT+GGG | + | chr5_3:10516741-10516760 | Msa0798010:CDS | 20.0% |
| ! | CATATCTATCATCAATCTAT+TGG | + | chr5_3:10514311-10514330 | Msa0798010:five_prime_UTR | 25.0% |
| !! | AAAACTTTCCTATTTTCGTA+TGG | + | chr5_3:10514491-10514510 | Msa0798010:five_prime_UTR | 25.0% |
| !! | AAACTTTCCTATTTTCGTAT+GGG | + | chr5_3:10514492-10514511 | Msa0798010:five_prime_UTR | 25.0% |
| ! | CCACATCTAAGAAATTAATT+TGG | - | chr5_3:10514537-10514556 | None:intergenic | 25.0% |
| ! | CCAAATTAATTTCTTAGATG+TGG | + | chr5_3:10514534-10514553 | Msa0798010:five_prime_UTR | 25.0% |
| !! | GAATGAACTAAATTTTCTGA+AGG | - | chr5_3:10514593-10514612 | None:intergenic | 25.0% |
| ! | CTTCAAATAAAAATCTGTCT+AGG | - | chr5_3:10514690-10514709 | None:intergenic | 25.0% |
| ! | CATGTTCATGAAAAACTAAA+AGG | - | chr5_3:10515057-10515076 | None:intergenic | 25.0% |
| !!! | GATGATTTACTTTTAGTGTT+CGG | + | chr5_3:10515931-10515950 | Msa0798010:intron | 25.0% |
| !!! | TAGGTTTTATCTTAACACTT+TGG | + | chr5_3:10516317-10516336 | Msa0798010:intron | 25.0% |
| !! | AGAGATTGTTTGAAATTGTT+TGG | + | chr5_3:10516849-10516868 | Msa0798010:CDS | 25.0% |
| ! | TAATTAGTTATCATCATGGT+TGG | + | chr5_3:10517133-10517152 | Msa0798010:three_prime_UTR | 25.0% |
| ! | AATTAGTTATCATCATGGTT+GGG | + | chr5_3:10517134-10517153 | Msa0798010:three_prime_UTR | 25.0% |
| CATTATTGACCAAATGAAAC+CGG | - | chr5_3:10514348-10514367 | None:intergenic | 30.0% | |
| TATTCTCCTTCAATGTCTTT+GGG | - | chr5_3:10514463-10514482 | None:intergenic | 30.0% | |
| ATATTCTCCTTCAATGTCTT+TGG | - | chr5_3:10514464-10514483 | None:intergenic | 30.0% | |
| ! | AACTTTCCTATTTTCGTATG+GGG | + | chr5_3:10514493-10514512 | Msa0798010:five_prime_UTR | 30.0% |
| ATAATTCCCCATACGAAAAT+AGG | - | chr5_3:10514502-10514521 | None:intergenic | 30.0% | |
| ! | ATATTAGTTGAAGGGTTGAT+CGG | + | chr5_3:10514798-10514817 | Msa0798010:five_prime_UTR | 30.0% |
| TGATACGTCTTCAACAAAAA+CGG | - | chr5_3:10514854-10514873 | None:intergenic | 30.0% | |
| TGAAAAACTAAAAGGAGAGA+GGG | - | chr5_3:10515049-10515068 | None:intergenic | 30.0% | |
| ATGAAAAACTAAAAGGAGAG+AGG | - | chr5_3:10515050-10515069 | None:intergenic | 30.0% | |
| !!! | AATTTTTGGGGTTCATAACA+AGG | + | chr5_3:10515172-10515191 | Msa0798010:intron | 30.0% |
| CAATACTTTCCTTCCAATTA+GGG | - | chr5_3:10515503-10515522 | None:intergenic | 30.0% | |
| CTACCAAGTAAATTCACTTT+CGG | - | chr5_3:10515596-10515615 | None:intergenic | 30.0% | |
| TTGGTAGATCACAATGAATT+AGG | + | chr5_3:10515609-10515628 | Msa0798010:intron | 30.0% | |
| CACATCTTTACAATTATGCA+CGG | - | chr5_3:10515902-10515921 | None:intergenic | 30.0% | |
| !! | ATTTACTTTTAGTGTTCGGA+TGG | + | chr5_3:10515935-10515954 | Msa0798010:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr5_3:10515984-10516003 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr5_3:10515985-10516004 | Msa0798010:intron | 30.0% |
| AATGATTAGCAGAAAGAGAA+TGG | + | chr5_3:10516033-10516052 | Msa0798010:intron | 30.0% | |
| !! | AAGCGACATTCATTTTGAAA+CGG | + | chr5_3:10516183-10516202 | Msa0798010:intron | 30.0% |
| ! | AGTGTTCAATGGTTTACTTT+TGG | + | chr5_3:10516254-10516273 | Msa0798010:intron | 30.0% |
| GAAAACGTGCTAATATTTGA+GGG | - | chr5_3:10516292-10516311 | None:intergenic | 30.0% | |
| AGAAAACGTGCTAATATTTG+AGG | - | chr5_3:10516293-10516312 | None:intergenic | 30.0% | |
| ! | ATTAGCACGTTTTCTTTTCT+AGG | + | chr5_3:10516298-10516317 | Msa0798010:intron | 30.0% |
| TGAGAAAATGCTAATTACCA+TGG | + | chr5_3:10516343-10516362 | Msa0798010:intron | 30.0% | |
| TTTGCAAATTCCCATTTATC+TGG | - | chr5_3:10516402-10516421 | None:intergenic | 30.0% | |
| TTGTGAATCTGTTCAAAATG+CGG | + | chr5_3:10516803-10516822 | Msa0798010:CDS | 30.0% | |
| !! | GTTTGAAATTGTTTGGTGTT+TGG | + | chr5_3:10516856-10516875 | Msa0798010:CDS | 30.0% |
| GAAATAAGCAATAAGAAGAG+AGG | + | chr5_3:10516903-10516922 | Msa0798010:CDS | 30.0% | |
| CCATGATGATAACTAATTAC+TGG | - | chr5_3:10517132-10517151 | None:intergenic | 30.0% | |
| CCAGTAATTAGTTATCATCA+TGG | + | chr5_3:10517129-10517148 | Msa0798010:three_prime_UTR | 30.0% | |
| AGAACCAACGTCACTTATTA+AGG | + | chr5_3:10514394-10514413 | Msa0798010:five_prime_UTR | 35.0% | |
| TTAGATGTGGCTTAAGCTAA+TGG | + | chr5_3:10514547-10514566 | Msa0798010:five_prime_UTR | 35.0% | |
| !! | TCCTTTCTGGTTTCTATTGT+TGG | + | chr5_3:10514621-10514640 | Msa0798010:five_prime_UTR | 35.0% |
| !! | CCTTTCTGGTTTCTATTGTT+GGG | + | chr5_3:10514622-10514641 | Msa0798010:five_prime_UTR | 35.0% |
| TGGTTTCTATTGTTGGGATT+GGG | + | chr5_3:10514628-10514647 | Msa0798010:five_prime_UTR | 35.0% | |
| TTTGTTGAAGACGTATCAGA+TGG | + | chr5_3:10514856-10514875 | Msa0798010:CDS | 35.0% | |
| !!! | GAAACATGCTGATTTTGCAA+GGG | + | chr5_3:10514943-10514962 | Msa0798010:CDS | 35.0% |
| ! | GGTTTTCAATCTTTTCGTGT+AGG | - | chr5_3:10515462-10515481 | None:intergenic | 35.0% |
| ! | CCAATTAGGGTATTCTACTT+CGG | - | chr5_3:10515490-10515509 | None:intergenic | 35.0% |
| AGTAGAATACCCTAATTGGA+AGG | + | chr5_3:10515491-10515510 | Msa0798010:intron | 35.0% | |
| CCAATACTTTCCTTCCAATT+AGG | - | chr5_3:10515504-10515523 | None:intergenic | 35.0% | |
| ! | CCTAATTGGAAGGAAAGTAT+TGG | + | chr5_3:10515501-10515520 | Msa0798010:intron | 35.0% |
| ACACCGAAAGTGAATTTACT+TGG | + | chr5_3:10515590-10515609 | Msa0798010:intron | 35.0% | |
| GGACATCGACGTTAAAAAAT+TGG | - | chr5_3:10515881-10515900 | None:intergenic | 35.0% | |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr5_3:10516115-10516134 | Msa0798010:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr5_3:10516119-10516138 | Msa0798010:intron | 35.0% |
| !!! | GACATTCATTTTGAAACGGA+GGG | + | chr5_3:10516223-10516242 | Msa0798010:intron | 35.0% |
| !!! | GGGAGTATTTTAGTGTTCAA+TGG | + | chr5_3:10516243-10516262 | Msa0798010:intron | 35.0% |
| ! | ACCATGGTTTTTGAATTTGC+AGG | + | chr5_3:10516359-10516378 | Msa0798010:intron | 35.0% |
| ! | CCATGGTTTTTGAATTTGCA+GGG | + | chr5_3:10516360-10516379 | Msa0798010:intron | 35.0% |
| ATTTATCTGGCACAAGCTTT+CGG | - | chr5_3:10516389-10516408 | None:intergenic | 35.0% | |
| AAAGCTTGTGCCAGATAAAT+GGG | + | chr5_3:10516389-10516408 | Msa0798010:CDS | 35.0% | |
| GCAAACGAAAATTTCAAACG+AGG | + | chr5_3:10516417-10516436 | Msa0798010:CDS | 35.0% | |
| CTCGATAAGTTAACACATTG+AGG | - | chr5_3:10516633-10516652 | None:intergenic | 35.0% | |
| ! | TGAAACCTTGAGTTGTGAAT+TGG | + | chr5_3:10516680-10516699 | Msa0798010:CDS | 35.0% |
| AAAGAAACAATGCGAAGAGT+TGG | + | chr5_3:10516710-10516729 | Msa0798010:CDS | 35.0% | |
| !! | ATTATGCGATCGATTTGATC+TGG | - | chr5_3:10516768-10516787 | None:intergenic | 35.0% |
| GTTGTGAACATGATGAAAAG+TGG | + | chr5_3:10517002-10517021 | Msa0798010:CDS | 35.0% | |
| CTTGAACACATGAAAGAAAC+AGG | - | chr5_3:10517180-10517199 | None:intergenic | 35.0% | |
| CATCAATCTATTGGTACGTG+TGG | + | chr5_3:10514320-10514339 | Msa0798010:five_prime_UTR | 40.0% | |
| CCAACCTTAATAAGTGACGT+TGG | - | chr5_3:10514401-10514420 | None:intergenic | 40.0% | |
| CCAACGTCACTTATTAAGGT+TGG | + | chr5_3:10514398-10514417 | Msa0798010:five_prime_UTR | 40.0% | |
| CATTCTCGTTTCTTCCTTTC+TGG | + | chr5_3:10514608-10514627 | Msa0798010:five_prime_UTR | 40.0% | |
| CCCAACAATAGAAACCAGAA+AGG | - | chr5_3:10514625-10514644 | None:intergenic | 40.0% | |
| CTGGTTTCTATTGTTGGGAT+TGG | + | chr5_3:10514627-10514646 | Msa0798010:five_prime_UTR | 40.0% | |
| !!! | GTGGTGAAAGTTTTGTTGTG+TGG | + | chr5_3:10514921-10514940 | Msa0798010:CDS | 40.0% |
| !!! | GGAAACATGCTGATTTTGCA+AGG | + | chr5_3:10514942-10514961 | Msa0798010:CDS | 40.0% |
| CCGAAGTAGAATACCCTAAT+TGG | + | chr5_3:10515487-10515506 | Msa0798010:intron | 40.0% | |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr5_3:10516118-10516137 | Msa0798010:intron | 40.0% |
| !!! | CGACATTCATTTTGAAACGG+AGG | + | chr5_3:10516222-10516241 | Msa0798010:intron | 40.0% |
| CCCTGCAAATTCAAAAACCA+TGG | - | chr5_3:10516363-10516382 | None:intergenic | 40.0% | |
| GAAAGCTTGTGCCAGATAAA+TGG | + | chr5_3:10516388-10516407 | Msa0798010:CDS | 40.0% | |
| !!! | GTTTTTTGAGTTGGAGGAAG+AGG | - | chr5_3:10516583-10516602 | None:intergenic | 40.0% |
| !!! | TGATCCAGGGTTTTTTGAGT+TGG | - | chr5_3:10516592-10516611 | None:intergenic | 40.0% |
| !! | TTGTTGTTTCCACTGATCCA+GGG | - | chr5_3:10516605-10516624 | None:intergenic | 40.0% |
| GAATCTGTTCAAAATGCGGT+TGG | + | chr5_3:10516807-10516826 | Msa0798010:CDS | 40.0% | |
| ! | GTTGGTGAAGTTGAAGAAAG+TGG | + | chr5_3:10516825-10516844 | Msa0798010:CDS | 40.0% |
| TGTGAAGACCAATTGAGCTA+TGG | + | chr5_3:10516927-10516946 | Msa0798010:CDS | 40.0% | |
| AAGACCAATTGAGCTATGGT+GGG | + | chr5_3:10516931-10516950 | Msa0798010:CDS | 40.0% | |
| GAACATGATGAAAAGTGGCA+AGG | + | chr5_3:10517007-10517026 | Msa0798010:CDS | 40.0% | |
| ! | ATCTGAAATGTGGCAAGCTA+AGG | - | chr5_3:10517051-10517070 | None:intergenic | 40.0% |
| TCTATTGGTACGTGTGGAAC+CGG | + | chr5_3:10514326-10514345 | Msa0798010:five_prime_UTR | 45.0% | |
| ATCGGAGAAAAATGTCGCAG+CGG | + | chr5_3:10514816-10514835 | Msa0798010:exon | 45.0% | |
| GTTGAAGACGTATCAGATGG+TGG | + | chr5_3:10514859-10514878 | Msa0798010:CDS | 45.0% | |
| !!! | GATGGTGGATGATTTTGCGA+CGG | + | chr5_3:10514874-10514893 | Msa0798010:CDS | 45.0% |
| CGACGGATGATGTGATATCA+TGG | + | chr5_3:10514891-10514910 | Msa0798010:CDS | 45.0% | |
| GTGATATCATGGAGTGAGAG+TGG | + | chr5_3:10514902-10514921 | Msa0798010:CDS | 45.0% | |
| GGGTATTCTACTTCGGTAGA+AGG | - | chr5_3:10515483-10515502 | None:intergenic | 45.0% | |
| ! | GGTTTTGCGGCGTTTGATAT+CGG | - | chr5_3:10516460-10516479 | None:intergenic | 45.0% |
| !! | ACGGTTGTGAGATGGTTTTG+CGG | - | chr5_3:10516473-10516492 | None:intergenic | 45.0% |
| !!! | CTGGTTTTTTCAGCTTCCAG+GGG | - | chr5_3:10516504-10516523 | None:intergenic | 45.0% |
| !!! | GCTGGTTTTTTCAGCTTCCA+GGG | - | chr5_3:10516505-10516524 | None:intergenic | 45.0% |
| !!! | TGCTGGTTTTTTCAGCTTCC+AGG | - | chr5_3:10516506-10516525 | None:intergenic | 45.0% |
| TGGAGAGTTGTCATTGATGC+TGG | - | chr5_3:10516523-10516542 | None:intergenic | 45.0% | |
| GACAACTCTCCATCAAACTC+CGG | + | chr5_3:10516531-10516550 | Msa0798010:CDS | 45.0% | |
| TCCTCCAACTCAAAAAACCC+TGG | + | chr5_3:10516585-10516604 | Msa0798010:CDS | 45.0% | |
| !!! | TCCAGGGTTTTTTGAGTTGG+AGG | - | chr5_3:10516589-10516608 | None:intergenic | 45.0% |
| CTCAAAAAACCCTGGATCAG+TGG | + | chr5_3:10516593-10516612 | Msa0798010:CDS | 45.0% | |
| !! | GTTGTTGTTTCCACTGATCC+AGG | - | chr5_3:10516606-10516625 | None:intergenic | 45.0% |
| ACGTGCCAATTCACAACTCA+AGG | - | chr5_3:10516688-10516707 | None:intergenic | 45.0% | |
| GAAGACCAATTGAGCTATGG+TGG | + | chr5_3:10516930-10516949 | Msa0798010:CDS | 45.0% | |
| ! | TTGTTACCCACTTTAGCTCG+AGG | - | chr5_3:10516957-10516976 | None:intergenic | 45.0% |
| ! | CGTGTGGAACCGGTTTCATT+TGG | + | chr5_3:10514336-10514355 | Msa0798010:five_prime_UTR | 50.0% |
| GTCTCGCCCAAAGACATTGA+AGG | + | chr5_3:10514454-10514473 | Msa0798010:five_prime_UTR | 50.0% | |
| GAGAAAAATGTCGCAGCGGT+CGG | + | chr5_3:10514820-10514839 | Msa0798010:exon | 50.0% | |
| GTCTTCAACAAAAACGGCGC+CGG | - | chr5_3:10514848-10514867 | None:intergenic | 50.0% | |
| !! | TATCGGTGAGGAGGTGTTTG+TGG | - | chr5_3:10516443-10516462 | None:intergenic | 50.0% |
| TTGTGACGACGGTTGTGAGA+TGG | - | chr5_3:10516481-10516500 | None:intergenic | 50.0% | |
| ! | TGAGTTGGAGGAAGAGGTTG+AGG | - | chr5_3:10516577-10516596 | None:intergenic | 50.0% |
| GGCGTTTGATATCGGTGAGG+AGG | - | chr5_3:10516452-10516471 | None:intergenic | 55.0% | |
| TGCGGCGTTTGATATCGGTG+AGG | - | chr5_3:10516455-10516474 | None:intergenic | 55.0% | |
| CCATCAAACTCCGGCAACGA+CGG | + | chr5_3:10516540-10516559 | Msa0798010:CDS | 55.0% | |
| GTTGGAGGAAGAGGTTGAGG+TGG | - | chr5_3:10516574-10516593 | None:intergenic | 55.0% | |
| GAGGCCCACCATAGCTCAAT+TGG | - | chr5_3:10516938-10516957 | None:intergenic | 55.0% | |
| ACAACCGTCGTCACAACCCC+TGG | + | chr5_3:10516485-10516504 | Msa0798010:CDS | 60.0% | |
| GCTTCCAGGGGTTGTGACGA+CGG | - | chr5_3:10516492-10516511 | None:intergenic | 60.0% | |
| CCGTCGTTGCCGGAGTTTGA+TGG | - | chr5_3:10516543-10516562 | None:intergenic | 60.0% | |
| ! | TGGTGGGCCTCGAGCTAAAG+TGG | + | chr5_3:10516947-10516966 | Msa0798010:CDS | 60.0% |
| GGTGGGCCTCGAGCTAAAGT+GGG | + | chr5_3:10516948-10516967 | Msa0798010:CDS | 60.0% | |
| AACTCCGGCAACGACGGAGC+AGG | + | chr5_3:10516546-10516565 | Msa0798010:CDS | 65.0% | |
| GGATCCTGCTCCGTCGTTGC+CGG | - | chr5_3:10516553-10516572 | None:intergenic | 65.0% | |
| AATGTCGCAGCGGTCGGCGC+CGG | + | chr5_3:10514826-10514845 | Msa0798010:exon | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 10514255 | 10517288 | 10514255 | ID=Msa0798010;Name=Msa0798010 |
| chr5_3 | mRNA | 10514255 | 10517288 | 10514255 | ID=Msa0798010-mRNA-1;Parent=Msa0798010;Name=Msa0798010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=572|1|1|1|1|1|2|248|287 |
| chr5_3 | exon | 10514255 | 10515030 | 10514255 | ID=Msa0798010-mRNA-1:exon:4395;Parent=Msa0798010-mRNA-1 |
| chr5_3 | exon | 10516381 | 10517288 | 10516381 | ID=Msa0798010-mRNA-1:exon:4396;Parent=Msa0798010-mRNA-1 |
| chr5_3 | five_prime_UTR | 10514255 | 10514826 | 10514255 | ID=Msa0798010-mRNA-1:five_prime_utr;Parent=Msa0798010-mRNA-1 |
| chr5_3 | CDS | 10514827 | 10515030 | 10514827 | ID=Msa0798010-mRNA-1:cds;Parent=Msa0798010-mRNA-1 |
| chr5_3 | CDS | 10516381 | 10517040 | 10516381 | ID=Msa0798010-mRNA-1:cds;Parent=Msa0798010-mRNA-1 |
| chr5_3 | three_prime_UTR | 10517041 | 10517288 | 10517041 | ID=Msa0798010-mRNA-1:three_prime_utr;Parent=Msa0798010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
