AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1105570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105570 MtrunA17_Chr7g0237741 90.511 274 13 2 1 268 1 267 9.95e-163 452
Msa1105570 MtrunA17_Chr2g0323971 70.671 283 55 6 1 268 1 270 4.62e-128 364
Msa1105570 MtrunA17_Chr4g0075481 38.393 112 58 2 99 202 36 144 9.13e-16 77.0
Msa1105570 MtrunA17_Chr4g0027201 38.462 117 58 3 99 201 399 515 2.67e-12 66.6
Msa1105570 MtrunA17_Chr2g0304261 35.433 127 74 4 86 207 27 150 4.85e-12 65.9
Msa1105570 MtrunA17_Chr2g0316221 36.842 95 47 2 105 193 465 552 8.50e-12 65.1
Msa1105570 MtrunA17_Chr8g0393041 30.818 159 81 4 66 217 457 593 2.41e-11 63.5
Msa1105570 MtrunA17_Chr8g0339141 31.220 205 118 4 23 204 314 518 2.73e-11 63.5
Msa1105570 MtrunA17_Chr1g0149561 33.913 115 70 3 99 207 37 151 6.94e-11 62.4
Msa1105570 MtrunA17_Chr5g0425741 35.714 98 62 1 105 202 447 543 8.07e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105570 AT4G30480.2 54.007 287 101 5 1 267 1 276 3.35e-96 284
Msa1105570 AT4G30480.1 44.860 214 87 5 1 194 1 203 3.59e-49 161
Msa1105570 AT4G30480.3 37.805 164 77 4 1 150 1 153 4.46e-25 98.2
Msa1105570 AT1G62390.1 36.800 125 68 2 99 215 48 169 3.88e-15 75.5
Msa1105570 AT4G32070.2 36.066 122 73 3 99 215 48 169 1.16e-12 68.2
Msa1105570 AT4G32070.1 36.066 122 73 3 99 215 48 169 1.16e-12 68.2
Msa1105570 AT2G25290.2 33.065 124 78 3 99 217 49 172 4.41e-12 66.2
Msa1105570 AT2G25290.3 33.065 124 78 3 99 217 49 172 4.41e-12 66.2
Msa1105570 AT2G25290.4 33.065 124 78 3 99 217 49 172 4.41e-12 66.2
Msa1105570 AT2G25290.1 33.065 124 78 3 99 217 49 172 4.41e-12 66.2
Msa1105570 AT5G65160.1 34.066 91 59 1 104 194 472 561 1.34e-11 64.7
Msa1105570 AT3G58620.2 27.703 148 88 3 78 213 419 559 3.36e-11 63.5
Msa1105570 AT3G58620.1 27.703 148 88 3 78 213 419 559 3.59e-11 63.5
Msa1105570 AT1G62740.1 34.951 103 66 1 102 204 2 103 3.86e-11 63.5
Msa1105570 AT4G12400.1 35.922 103 65 1 102 204 2 103 5.35e-11 62.8
Msa1105570 AT3G25230.1 36.424 151 75 4 102 238 400 543 5.50e-11 62.8
Msa1105570 AT4G12400.2 35.922 103 65 1 102 204 2 103 6.47e-11 62.8
Msa1105570 AT3G25230.2 36.424 151 75 4 102 238 400 543 6.67e-11 62.8

Find 65 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCAGTTAATGTGCTTTA+AGG 0.118268 7_3:-44128969 Msa1105570:three_prime_UTR
TTTCCCAGCTTGACCATTTA+AGG 0.148479 7_3:+44130099 None:intergenic
TTTAAGCTTCGAGGTTCTTC+TGG 0.237352 7_3:+44132779 None:intergenic
TTAGAAATTGATCCCTTAAA+TGG 0.258466 7_3:-44130112 Msa1105570:CDS
AAACCTTAAAGCACATTAAC+TGG 0.318411 7_3:+44128966 None:intergenic
AGGAACCAGTGTTTGGATCT+TGG 0.328792 7_3:+44129210 None:intergenic
AATTCTGTATTGGGACGCTT+TGG 0.332566 7_3:-44129260 Msa1105570:CDS
GAAGGAGCAAGAGGGAGAAC+AGG 0.368826 7_3:-44132482 Msa1105570:CDS
AGCGTCGTTGCCGGCGGCAG+TGG 0.379439 7_3:+44132603 None:intergenic
TTTGTGATGTATCTTCAAAA+AGG 0.383870 7_3:-44129035 Msa1105570:three_prime_UTR
ATTTAAGGGATCAATTTCTA+AGG 0.388641 7_3:+44130114 None:intergenic
GCAAATGAAGCAAAAGTAGA+AGG 0.396741 7_3:-44131164 Msa1105570:CDS
AGAAATGGGCAATTCTGTAT+TGG 0.397649 7_3:-44129270 Msa1105570:CDS
ATTCTGTATTGGGACGCTTT+GGG 0.401053 7_3:-44129259 Msa1105570:CDS
GCCCCTTGCTGCTGTAAAAC+GGG 0.405609 7_3:-44130059 Msa1105570:CDS
CAATGAATCGGAATTGAAAC+AGG 0.408117 7_3:-44132392 Msa1105570:intron
TTCCCAGCTTGACCATTTAA+GGG 0.418450 7_3:+44130100 None:intergenic
GAAATGGGCAATTCTGTATT+GGG 0.422321 7_3:-44129269 Msa1105570:CDS
ATAGAATAGGAACCAGTGTT+TGG 0.423050 7_3:+44129203 None:intergenic
AGCCCCTTGCTGCTGTAAAA+CGG 0.433750 7_3:-44130060 Msa1105570:CDS
TTCGGTGTCAGAGACTTGTT+TGG 0.434377 7_3:+44132692 None:intergenic
GCGTTCCATTGAGATAGAAT+AGG 0.437193 7_3:+44129190 None:intergenic
ACCAAAGCTTTAACATATGC+AGG 0.443256 7_3:+44130699 None:intergenic
ATAATAGTTTGAGACTTCAA+TGG 0.444996 7_3:-44129086 Msa1105570:three_prime_UTR
TCCTGCATATGTTAAAGCTT+TGG 0.447235 7_3:-44130700 Msa1105570:CDS
TCCACAGATGAAGGCATGTC+TGG 0.448983 7_3:+44131071 None:intergenic
CCGGCGGCAGTGGCGTTGGA+TGG 0.453485 7_3:+44132613 None:intergenic
ACCGTCGGAAGCGTCGTTGC+CGG 0.458550 7_3:+44132594 None:intergenic
GATCCCTTAAATGGTCAAGC+TGG 0.462169 7_3:-44130103 Msa1105570:CDS
GAGCGTATTTCCACAGATGA+AGG 0.467315 7_3:+44131062 None:intergenic
GAATGCTTTGATCAATGAAT+CGG 0.480599 7_3:-44132404 Msa1105570:CDS
CTACCATCTTCGAGAAGGTT+CGG 0.482686 7_3:+44132674 None:intergenic
GTTGCCGGCGGCAGTGGCGT+TGG 0.483157 7_3:+44132609 None:intergenic
TAAAGAATGCACAAAAGCAT+TGG 0.487615 7_3:-44130730 Msa1105570:CDS
CCATCCAACGCCACTGCCGC+CGG 0.494207 7_3:-44132613 Msa1105570:CDS
GGACTGCTTTGAAGTTGTCA+AGG 0.494691 7_3:+44129231 None:intergenic
TGGTTCCTATTCTATCTCAA+TGG 0.506189 7_3:-44129195 Msa1105570:CDS
GTTAAAGCTTTGGTGAGAAG+AGG 0.519249 7_3:-44130690 Msa1105570:CDS
ACACCGAACCTTCTCGAAGA+TGG 0.536276 7_3:-44132677 Msa1105570:exon
GTAATTGCACTAAGCAAGAA+AGG 0.538228 7_3:-44129121 Msa1105570:three_prime_UTR
GCTATCGAGATCAGCTTCGC+TGG 0.539161 7_3:+44132561 None:intergenic
CTCGATAGCGACGGCGATGA+CGG 0.540826 7_3:-44132547 Msa1105570:CDS
GCCGGCAACGACGCTTCCGA+CGG 0.542143 7_3:-44132595 Msa1105570:CDS
TGGAATCGCGTTTCGATCGT+CGG 0.546354 7_3:+44132633 None:intergenic
AAAATGAAAGAAGAAATGAT+TGG 0.548679 7_3:-44130034 Msa1105570:intron
ATCCCTTAAATGGTCAAGCT+GGG 0.552846 7_3:-44130102 Msa1105570:CDS
GTCGGAAGCGTCGTTGCCGG+CGG 0.566366 7_3:+44132597 None:intergenic
TCAGAGAAGTGTTTCGTCTG+AGG 0.566568 7_3:-44132446 Msa1105570:CDS
TGTAGATGGGAAGTATGAGG+AGG 0.584891 7_3:-44131129 Msa1105570:CDS
AATTATCAGTCTCCTTCACA+TGG 0.589653 7_3:+44128996 None:intergenic
CAGCAGCAAGGGGCTCTAGT+CGG 0.591364 7_3:+44130068 None:intergenic
AAGGGGCTCTAGTCGGCGAA+TGG 0.604837 7_3:+44130075 None:intergenic
TGAGCAAACGAAGGAGCAAG+AGG 0.609815 7_3:-44132491 Msa1105570:CDS
TTGTGATTGATTCCATGTGA+AGG 0.612480 7_3:-44129008 Msa1105570:three_prime_UTR
ACCAGACATGCCTTCATCTG+TGG 0.615100 7_3:-44131072 Msa1105570:CDS
AGCTTTGGTGAGAAGAGGAG+AGG 0.620909 7_3:-44130685 Msa1105570:CDS
ATCGAGATCAGCTTCGCTGG+CGG 0.625355 7_3:+44132564 None:intergenic
TATCACTACCATCTTCGAGA+AGG 0.639913 7_3:+44132669 None:intergenic
GCTGGCGGTTTCGAAACCGT+CGG 0.641137 7_3:+44132579 None:intergenic
GCAGTCCAAGATCCAAACAC+TGG 0.648347 7_3:-44129215 Msa1105570:CDS
GAGCAAACGAAGGAGCAAGA+GGG 0.650540 7_3:-44132490 Msa1105570:CDS
GATAGCGACGGCGATGACGG+TGG 0.651321 7_3:-44132544 Msa1105570:CDS
GAAGCTGATCTCGATAGCGA+CGG 0.668142 7_3:-44132556 Msa1105570:CDS
TAGTCATTATGAGAAAACAA+AGG 0.685579 7_3:-44129058 Msa1105570:three_prime_UTR
AGAGATTCTTGAGCAAACGA+AGG 0.691545 7_3:-44132500 Msa1105570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTTTCAAAATATAAT+TGG - chr7_3:44131557-44131576 Msa1105570:intron 10.0%
!! ATATACAAACAAATATTAAA+AGG + chr7_3:44131728-44131747 None:intergenic 10.0%
!!! TTAAGTTTGGATTAATTTTT+GGG - chr7_3:44129549-44129568 Msa1105570:intron 15.0%
!!! TTATTTATTTTTGCATTGAA+AGG - chr7_3:44130023-44130042 Msa1105570:intron 15.0%
!!! TATTTATTTTTGCATTGAAA+GGG - chr7_3:44130024-44130043 Msa1105570:intron 15.0%
!! GAAAAATAATATTTACATCA+AGG - chr7_3:44131173-44131192 Msa1105570:CDS 15.0%
!! TGAAAAGAAAAAAAAAAAAC+TGG + chr7_3:44131548-44131567 None:intergenic 15.0%
!!! ATTTATTATTTTGTCTTTGT+AGG - chr7_3:44131746-44131765 Msa1105570:intron 15.0%
!! ATGGTATAAAATATAAATGA+AGG + chr7_3:44131805-44131824 None:intergenic 15.0%
!!! TTTGTTTTATGCATATATTT+TGG - chr7_3:44132149-44132168 Msa1105570:intron 15.0%
!! AAGAAACTTCAAAAAAAAAG+GGG + chr7_3:44129383-44129402 None:intergenic 20.0%
!! GAAGAAACTTCAAAAAAAAA+GGG + chr7_3:44129384-44129403 None:intergenic 20.0%
!! TGAAGAAACTTCAAAAAAAA+AGG + chr7_3:44129385-44129404 None:intergenic 20.0%
!!! TATGTGTTAGTTTTTGTTAA+TGG - chr7_3:44129420-44129439 Msa1105570:intron 20.0%
!!! GTTAAGTTTGGATTAATTTT+TGG - chr7_3:44129548-44129567 Msa1105570:intron 20.0%
!!! TAAATTGATTTTGACATGTT+TGG - chr7_3:44129584-44129603 Msa1105570:intron 20.0%
!! TTATACTTGATTATAACAAG+AGG + chr7_3:44130256-44130275 None:intergenic 20.0%
!!! TCTTGTTATAATCAAGTATA+AGG - chr7_3:44130255-44130274 Msa1105570:intron 20.0%
!! AAGTTGTAAATAACATAGTA+AGG - chr7_3:44131345-44131364 Msa1105570:intron 20.0%
!! AGTTGTAAATAACATAGTAA+GGG - chr7_3:44131346-44131365 Msa1105570:intron 20.0%
!! AAAATGAAAGAAGAAATGAT+TGG - chr7_3:44131675-44131694 Msa1105570:intron 20.0%
!! GAACTATATGAGAAATTATT+AGG - chr7_3:44131979-44131998 Msa1105570:intron 20.0%
!!! ATTACCTACCATTTAATTTT+TGG - chr7_3:44132261-44132280 Msa1105570:intron 20.0%
!!! ATTTTTATTTCGTGTGTTTG+AGG + chr7_3:44128957-44128976 None:intergenic 25.0%
! CAATACATGAAGAAAATTTC+TGG - chr7_3:44129515-44129534 Msa1105570:intron 25.0%
! AGTCAAAAATTCACATTTCA+AGG + chr7_3:44129863-44129882 None:intergenic 25.0%
!!! GAGTTTTTTTTCGAATAGAA+GGG - chr7_3:44130160-44130179 Msa1105570:intron 25.0%
!! ATAATCAAGTATAAGGTGTT+TGG - chr7_3:44130262-44130281 Msa1105570:intron 25.0%
!! TAATCAAGTATAAGGTGTTT+GGG - chr7_3:44130263-44130282 Msa1105570:intron 25.0%
! CAAATCCAAAATCAGAAAAA+AGG + chr7_3:44130450-44130469 None:intergenic 25.0%
!! GTAACAAACTTTTTGTAGAT+GGG - chr7_3:44130567-44130586 Msa1105570:intron 25.0%
! CATTACAGTATAATAGAAGA+AGG + chr7_3:44130718-44130737 None:intergenic 25.0%
! ATTTAACTAGTTGACATATG+CGG + chr7_3:44130780-44130799 None:intergenic 25.0%
! GTAAGTTCAAGCTTATATTA+AGG - chr7_3:44131086-44131105 Msa1105570:CDS 25.0%
! ATAGGAACCTTATATAAGTA+GGG + chr7_3:44131254-44131273 None:intergenic 25.0%
! AATAGGAACCTTATATAAGT+AGG + chr7_3:44131255-44131274 None:intergenic 25.0%
!! ATGTTATTTACAACTTGCTT+GGG + chr7_3:44131341-44131360 None:intergenic 25.0%
!! TATGTTATTTACAACTTGCT+TGG + chr7_3:44131342-44131361 None:intergenic 25.0%
!! TTTGATTTCTCAAACAAGAA+GGG - chr7_3:44131372-44131391 Msa1105570:intron 25.0%
! ATTTAAGGGATCAATTTCTA+AGG + chr7_3:44131598-44131617 None:intergenic 25.0%
! TTAGAAATTGATCCCTTAAA+TGG - chr7_3:44131597-44131616 Msa1105570:intron 25.0%
!!! ATTATTTTGTCTTTGTAGGA+TGG - chr7_3:44131750-44131769 Msa1105570:intron 25.0%
! AATCAGGAATATACTCAATT+GGG + chr7_3:44131848-44131867 None:intergenic 25.0%
! TAATCAGGAATATACTCAAT+TGG + chr7_3:44131849-44131868 None:intergenic 25.0%
! ATTTCTCATATAGTTCTTCT+AGG + chr7_3:44131975-44131994 None:intergenic 25.0%
! AATTACTACGTAAACATCAT+AGG - chr7_3:44132236-44132255 Msa1105570:intron 25.0%
! TATAACAGAATGTCATATGT+AGG + chr7_3:44132293-44132312 None:intergenic 25.0%
! TAAATAGACAAACTTGGTTA+CGG + chr7_3:44132350-44132369 None:intergenic 25.0%
! ATGAAGTAAATAGACAAACT+TGG + chr7_3:44132356-44132375 None:intergenic 25.0%
! TGCAGAAAAATTGAAAGAAA+TGG - chr7_3:44132424-44132443 Msa1105570:CDS 25.0%
! GCAGAAAAATTGAAAGAAAT+GGG - chr7_3:44132425-44132444 Msa1105570:CDS 25.0%
!! ATAATAGTTTGAGACTTCAA+TGG - chr7_3:44132623-44132642 Msa1105570:CDS 25.0%
! TAGTCATTATGAGAAAACAA+AGG - chr7_3:44132651-44132670 Msa1105570:CDS 25.0%
! TTTGTGATGTATCTTCAAAA+AGG - chr7_3:44132674-44132693 Msa1105570:exon 25.0%
!!! CAAGAATCTCTTGTTTTTCT+CGG + chr7_3:44129200-44129219 None:intergenic 30.0%
GAATGCTTTGATCAATGAAT+CGG - chr7_3:44129305-44129324 Msa1105570:intron 30.0%
AGGTTCGATTTCCAAATTTA+GGG - chr7_3:44129337-44129356 Msa1105570:intron 30.0%
CTATAACGAAACCCTAAATT+TGG + chr7_3:44129351-44129370 None:intergenic 30.0%
AAAGCAGAAGAGTTATGTTT+AGG - chr7_3:44129958-44129977 Msa1105570:intron 30.0%
AAAACACATTAAAGCACAAG+AGG - chr7_3:44130097-44130116 Msa1105570:CDS 30.0%
!!! TTTTTTCCGATAGTTCTAGT+TGG - chr7_3:44130120-44130139 Msa1105570:CDS 30.0%
!!! CGAGTTTTTTTTCGAATAGA+AGG - chr7_3:44130159-44130178 Msa1105570:intron 30.0%
!!! GGTAACCTTTTTTCTGATTT+TGG - chr7_3:44130442-44130461 Msa1105570:intron 30.0%
! GGTAACAAACTTTTTGTAGA+TGG - chr7_3:44130566-44130585 Msa1105570:intron 30.0%
CAACTACAAACATGACATAA+GGG + chr7_3:44130881-44130900 None:intergenic 30.0%
ACAACTACAAACATGACATA+AGG + chr7_3:44130882-44130901 None:intergenic 30.0%
! GTATTTTCATATTTTCCCTG+AGG + chr7_3:44130956-44130975 None:intergenic 30.0%
! TAAAGAATGCACAAAAGCAT+TGG - chr7_3:44130979-44130998 Msa1105570:intron 30.0%
!! AAAGCTTGAACATTTTGAAG+AGG - chr7_3:44131054-44131073 Msa1105570:CDS 30.0%
TTCAAGCTTATATTAAGGCA+AGG - chr7_3:44131091-44131110 Msa1105570:CDS 30.0%
! TGTTATTTACAACTTGCTTG+GGG + chr7_3:44131340-44131359 None:intergenic 30.0%
! CTTTGATTTCTCAAACAAGA+AGG - chr7_3:44131371-44131390 Msa1105570:intron 30.0%
!!! AGTCATTTTTGTCTTTCTCT+TGG - chr7_3:44131700-44131719 Msa1105570:intron 30.0%
GGAAATTAGGAATACTCTAA+TGG + chr7_3:44131824-44131843 None:intergenic 30.0%
ATCAGGAATATACTCAATTG+GGG + chr7_3:44131847-44131866 None:intergenic 30.0%
TTGAGAACAAGTCAATAATC+AGG + chr7_3:44131864-44131883 None:intergenic 30.0%
!! ATTATTGACTTGTTCTCAAG+TGG - chr7_3:44131865-44131884 Msa1105570:intron 30.0%
TACGTGTAAGATAGAACATT+AGG - chr7_3:44131921-44131940 Msa1105570:intron 30.0%
ATTAGGAAATGCTTCTTGTT+AGG - chr7_3:44131938-44131957 Msa1105570:intron 30.0%
TTAGGAAATGCTTCTTGTTA+GGG - chr7_3:44131939-44131958 Msa1105570:intron 30.0%
AGGAAAATGTTAGATGTCAA+TGG - chr7_3:44131999-44132018 Msa1105570:intron 30.0%
TGACGTATAATCGAACATTA+TGG - chr7_3:44132035-44132054 Msa1105570:intron 30.0%
! AAACCAAGTCTTATACTACT+AGG + chr7_3:44132089-44132108 None:intergenic 30.0%
!! GCATAAAACAAAGCATTTTC+AGG + chr7_3:44132141-44132160 None:intergenic 30.0%
ATGGCCAAAAATTAAATGGT+AGG + chr7_3:44132268-44132287 None:intergenic 30.0%
AAACCTTAAAGCACATTAAC+TGG + chr7_3:44132746-44132765 None:intergenic 30.0%
CAATGAATCGGAATTGAAAC+AGG - chr7_3:44129317-44129336 Msa1105570:intron 35.0%
CAGGTTCGATTTCCAAATTT+AGG - chr7_3:44129336-44129355 Msa1105570:intron 35.0%
GGTTTAGTGAGTGTTAAGTT+TGG - chr7_3:44129536-44129555 Msa1105570:intron 35.0%
AATGAAGTCTAGCACAAACA+CGG + chr7_3:44129784-44129803 None:intergenic 35.0%
AATGTTGAGATCTTGAGCTT+TGG - chr7_3:44129837-44129856 Msa1105570:intron 35.0%
! ATAGAAGGGTTTTCTGTTCA+TGG - chr7_3:44130174-44130193 Msa1105570:intron 35.0%
TTTCTGTTCATGGCTTAAGT+TGG - chr7_3:44130184-44130203 Msa1105570:intron 35.0%
! GCTTTCTTTTTCTCCACTAT+TGG + chr7_3:44130392-44130411 None:intergenic 35.0%
AGCTTGTGCAACTAGTAATT+TGG - chr7_3:44130421-44130440 Msa1105570:intron 35.0%
GCAAATGAAGCAAAAGTAGA+AGG - chr7_3:44130545-44130564 Msa1105570:intron 35.0%
!! TTTTGTAGATGGGAAGTATG+AGG - chr7_3:44130577-44130596 Msa1105570:intron 35.0%
TATGCGGTAAAGCAAAATAC+AGG + chr7_3:44130764-44130783 None:intergenic 35.0%
ACATACGTCAAATATACCTC+AGG - chr7_3:44130937-44130956 Msa1105570:intron 35.0%
CATACGTCAAATATACCTCA+GGG - chr7_3:44130938-44130957 Msa1105570:intron 35.0%
TCCTGCATATGTTAAAGCTT+TGG - chr7_3:44131009-44131028 Msa1105570:intron 35.0%
! ACCAAAGCTTTAACATATGC+AGG + chr7_3:44131013-44131032 None:intergenic 35.0%
GTACCTTCCCTACTTATATA+AGG - chr7_3:44131244-44131263 Msa1105570:intron 35.0%
GAACCTTATATAAGTAGGGA+AGG + chr7_3:44131250-44131269 None:intergenic 35.0%
GTCTTGAAGGGAAATAGAAT+AGG + chr7_3:44131272-44131291 None:intergenic 35.0%
! CTCCAGTTATCTGTTTGTTT+TGG - chr7_3:44131415-44131434 Msa1105570:intron 35.0%
AGCCAAAACAAACAGATAAC+TGG + chr7_3:44131420-44131439 None:intergenic 35.0%
ACTGGTGAAACGAAAAGATA+CGG + chr7_3:44131530-44131549 None:intergenic 35.0%
TCAGGAATATACTCAATTGG+GGG + chr7_3:44131846-44131865 None:intergenic 35.0%
TAGGAAATGCTTCTTGTTAG+GGG - chr7_3:44131940-44131959 Msa1105570:intron 35.0%
! AAGTCTTATACTACTAGGTG+GGG + chr7_3:44132084-44132103 None:intergenic 35.0%
! CAAGTCTTATACTACTAGGT+GGG + chr7_3:44132085-44132104 None:intergenic 35.0%
! TCCTTGCACATGTAATTTGT+TGG - chr7_3:44132179-44132198 Msa1105570:intron 35.0%
! TGACTTTTCTTAGATGCACT+TGG - chr7_3:44132209-44132228 Msa1105570:intron 35.0%
! GACTTTTCTTAGATGCACTT+GGG - chr7_3:44132210-44132229 Msa1105570:intron 35.0%
GGCAATGGCCAAAAATTAAA+TGG + chr7_3:44132272-44132291 None:intergenic 35.0%
AGAATGTCATATGTAGGCAA+TGG + chr7_3:44132287-44132306 None:intergenic 35.0%
TCATCTGTCAAAGCAAATGA+TGG + chr7_3:44132393-44132412 None:intergenic 35.0%
AGAAATGGGCAATTCTGTAT+TGG - chr7_3:44132439-44132458 Msa1105570:CDS 35.0%
GAAATGGGCAATTCTGTATT+GGG - chr7_3:44132440-44132459 Msa1105570:CDS 35.0%
ATAGAATAGGAACCAGTGTT+TGG + chr7_3:44132509-44132528 None:intergenic 35.0%
TGGTTCCTATTCTATCTCAA+TGG - chr7_3:44132514-44132533 Msa1105570:CDS 35.0%
GTAATTGCACTAAGCAAGAA+AGG - chr7_3:44132588-44132607 Msa1105570:CDS 35.0%
! TTGTGATTGATTCCATGTGA+AGG - chr7_3:44132701-44132720 Msa1105570:five_prime_UTR 35.0%
AATTATCAGTCTCCTTCACA+TGG + chr7_3:44132716-44132735 None:intergenic 35.0%
CTTCCAGTTAATGTGCTTTA+AGG - chr7_3:44132740-44132759 Msa1105570:five_prime_UTR 35.0%
TTTAAGCTTCGAGGTTCTTC+TGG + chr7_3:44128933-44128952 None:intergenic 40.0%
!!! GTTTGAGGTTTTAAGCTTCG+AGG + chr7_3:44128942-44128961 None:intergenic 40.0%
TATCACTACCATCTTCGAGA+AGG + chr7_3:44129043-44129062 None:intergenic 40.0%
AGAGATTCTTGAGCAAACGA+AGG - chr7_3:44129209-44129228 Msa1105570:CDS 40.0%
!!! TGTAGCACTGACACTTTTGA+TGG - chr7_3:44129631-44129650 Msa1105570:intron 40.0%
! CTTTTGATGGAATGCATGTC+CGG - chr7_3:44129644-44129663 Msa1105570:intron 40.0%
CGATGTGTTAGTGTTGTGTT+TGG - chr7_3:44129755-44129774 Msa1105570:intron 40.0%
TATGTTTAGGTAGCCCTAGT+TGG - chr7_3:44129971-44129990 Msa1105570:intron 40.0%
!! TTTCCGATAGTTCTAGTTGG+AGG - chr7_3:44130123-44130142 Msa1105570:CDS 40.0%
!! TTCCGATAGTTCTAGTTGGA+GGG - chr7_3:44130124-44130143 Msa1105570:CDS 40.0%
!! TGTTCATGGCTTAAGTTGGA+GGG - chr7_3:44130188-44130207 Msa1105570:intron 40.0%
! TCAAGTATAAGGTGTTTGGG+TGG - chr7_3:44130266-44130285 Msa1105570:intron 40.0%
! CAAGTATAAGGTGTTTGGGT+GGG - chr7_3:44130267-44130286 Msa1105570:intron 40.0%
CGATAATCTCTCTCCAATAG+TGG - chr7_3:44130376-44130395 Msa1105570:intron 40.0%
! AGTTTCAAAAGCACACAGCA+CGG + chr7_3:44130688-44130707 None:intergenic 40.0%
!!! GTGTGCTTTTGAAACTGGTA+TGG - chr7_3:44130692-44130711 Msa1105570:CDS 40.0%
ATTCCAGATTAAGCTGCTAC+AGG - chr7_3:44130835-44130854 Msa1105570:intron 40.0%
TTCCAGATTAAGCTGCTACA+GGG - chr7_3:44130836-44130855 Msa1105570:intron 40.0%
! GTTAAAGCTTTGGTGAGAAG+AGG - chr7_3:44131019-44131038 Msa1105570:intron 40.0%
!! CATTTTGAAGAGGCAATTGC+TGG - chr7_3:44131064-44131083 Msa1105570:CDS 40.0%
AGTGCAAACTTCAGATGAGT+TGG + chr7_3:44131127-44131146 None:intergenic 40.0%
TACATGCGATACTTCAACCA+AGG + chr7_3:44131227-44131246 None:intergenic 40.0%
! TTTACAACTTGCTTGGGGTT+GGG + chr7_3:44131335-44131354 None:intergenic 40.0%
! ATTTACAACTTGCTTGGGGT+TGG + chr7_3:44131336-44131355 None:intergenic 40.0%
TGGTGAAACGAAAAGATACG+GGG + chr7_3:44131528-44131547 None:intergenic 40.0%
CTGGTGAAACGAAAAGATAC+GGG + chr7_3:44131529-44131548 None:intergenic 40.0%
ATCCCTTAAATGGTCAAGCT+GGG - chr7_3:44131607-44131626 Msa1105570:intron 40.0%
TTCCCAGCTTGACCATTTAA+GGG + chr7_3:44131612-44131631 None:intergenic 40.0%
TTTCCCAGCTTGACCATTTA+AGG + chr7_3:44131613-44131632 None:intergenic 40.0%
TACTCAATTGGGGGGAAATT+AGG + chr7_3:44131837-44131856 None:intergenic 40.0%
CAGGAATATACTCAATTGGG+GGG + chr7_3:44131845-44131864 None:intergenic 40.0%
! CCAAGTCTTATACTACTAGG+TGG + chr7_3:44132086-44132105 None:intergenic 40.0%
CCACCTAGTAGTATAAGACT+TGG - chr7_3:44132083-44132102 Msa1105570:intron 40.0%
GCCAACAAATTACATGTGCA+AGG + chr7_3:44132183-44132202 None:intergenic 40.0%
!! GCACATGTAATTTGTTGGCT+AGG - chr7_3:44132184-44132203 Msa1105570:intron 40.0%
AATTCTGTATTGGGACGCTT+TGG - chr7_3:44132449-44132468 Msa1105570:CDS 40.0%
ATTCTGTATTGGGACGCTTT+GGG - chr7_3:44132450-44132469 Msa1105570:CDS 40.0%
GCGTTCCATTGAGATAGAAT+AGG + chr7_3:44132522-44132541 None:intergenic 40.0%
!! TTCGGTGTCAGAGACTTGTT+TGG + chr7_3:44129020-44129039 None:intergenic 45.0%
CTACCATCTTCGAGAAGGTT+CGG + chr7_3:44129038-44129057 None:intergenic 45.0%
!! TCAGAGAAGTGTTTCGTCTG+AGG - chr7_3:44129263-44129282 Msa1105570:CDS 45.0%
CTCCCTCCAACTAGAACTAT+CGG + chr7_3:44130129-44130148 None:intergenic 45.0%
!! CTGTTCATGGCTTAAGTTGG+AGG - chr7_3:44130187-44130206 Msa1105570:intron 45.0%
ACGTTCATTGCATTCTGAGC+TGG - chr7_3:44130211-44130230 Msa1105570:intron 45.0%
! TGTAGATGGGAAGTATGAGG+AGG - chr7_3:44130580-44130599 Msa1105570:intron 45.0%
GAGCGTATTTCCACAGATGA+AGG + chr7_3:44130650-44130669 None:intergenic 45.0%
!!! GTGCTGTGTGCTTTTGAAAC+TGG - chr7_3:44130687-44130706 Msa1105570:CDS 45.0%
TTATGCCTGACACTCTTCCT+TGG - chr7_3:44131207-44131226 Msa1105570:intron 45.0%
!! TTCAACCAAGGAAGAGTGTC+AGG + chr7_3:44131215-44131234 None:intergenic 45.0%
! TTACAACTTGCTTGGGGTTG+GGG + chr7_3:44131334-44131353 None:intergenic 45.0%
! TCTCAAACAAGAAGGGTGTG+TGG - chr7_3:44131379-44131398 Msa1105570:intron 45.0%
GATCCCTTAAATGGTCAAGC+TGG - chr7_3:44131606-44131625 Msa1105570:intron 45.0%
! TTCCCGTTTTACAGCAGCAA+GGG + chr7_3:44131655-44131674 None:intergenic 45.0%
! TTTCCCGTTTTACAGCAGCA+AGG + chr7_3:44131656-44131675 None:intergenic 45.0%
!! GGACTGCTTTGAAGTTGTCA+AGG + chr7_3:44132481-44132500 None:intergenic 45.0%
AGGAACCAGTGTTTGGATCT+TGG + chr7_3:44132502-44132521 None:intergenic 45.0%
ACACCGAACCTTCTCGAAGA+TGG - chr7_3:44129032-44129051 Msa1105570:three_prime_UTR 50.0%
TGGAATCGCGTTTCGATCGT+CGG + chr7_3:44129079-44129098 None:intergenic 50.0%
GAAGCTGATCTCGATAGCGA+CGG - chr7_3:44129153-44129172 Msa1105570:three_prime_UTR 50.0%
TGAGCAAACGAAGGAGCAAG+AGG - chr7_3:44129218-44129237 Msa1105570:CDS 50.0%
GAGCAAACGAAGGAGCAAGA+GGG - chr7_3:44129219-44129238 Msa1105570:CDS 50.0%
! GTCGTGTCAGTGTTGAACAC+CGG + chr7_3:44129666-44129685 None:intergenic 50.0%
TAGTGACCTCGCTCCAACTA+GGG + chr7_3:44129987-44130006 None:intergenic 50.0%
TTAGTGACCTCGCTCCAACT+AGG + chr7_3:44129988-44130007 None:intergenic 50.0%
!! CGATAGTTCTAGTTGGAGGG+AGG - chr7_3:44130127-44130146 Msa1105570:CDS 50.0%
ACCAGACATGCCTTCATCTG+TGG - chr7_3:44130637-44130656 Msa1105570:intron 50.0%
! TCCACAGATGAAGGCATGTC+TGG + chr7_3:44130641-44130660 None:intergenic 50.0%
CACCCTGTAGCAGCTTAATC+TGG + chr7_3:44130841-44130860 None:intergenic 50.0%
! AGCTTTGGTGAGAAGAGGAG+AGG - chr7_3:44131024-44131043 Msa1105570:intron 50.0%
AGATCTCGTAGCCACGCTAT+CGG + chr7_3:44131294-44131313 None:intergenic 50.0%
GGTTGGGGTCTGTCTAAGTA+AGG + chr7_3:44131319-44131338 None:intergenic 50.0%
AGCCCCTTGCTGCTGTAAAA+CGG - chr7_3:44131649-44131668 Msa1105570:intron 50.0%
! TCCCGTTTTACAGCAGCAAG+GGG + chr7_3:44131654-44131673 None:intergenic 50.0%
GTCTTTGTAGGATGGTGCGT+TGG - chr7_3:44131758-44131777 Msa1105570:intron 50.0%
ACTAGGTGGGGTTGACTACA+TGG + chr7_3:44132072-44132091 None:intergenic 50.0%
GCAGTCCAAGATCCAAACAC+TGG - chr7_3:44132494-44132513 Msa1105570:CDS 50.0%
ATCGAGATCAGCTTCGCTGG+CGG + chr7_3:44129148-44129167 None:intergenic 55.0%
GCTATCGAGATCAGCTTCGC+TGG + chr7_3:44129151-44129170 None:intergenic 55.0%
GAAGGAGCAAGAGGGAGAAC+AGG - chr7_3:44129227-44129246 Msa1105570:CDS 55.0%
TCCCTTCAAGACCGATAGCG+TGG - chr7_3:44131280-44131299 Msa1105570:intron 55.0%
GCCACGCTATCGGTCTTGAA+GGG + chr7_3:44131284-44131303 None:intergenic 55.0%
AGCCACGCTATCGGTCTTGA+AGG + chr7_3:44131285-44131304 None:intergenic 55.0%
GCCCCTTGCTGCTGTAAAAC+GGG - chr7_3:44131650-44131669 Msa1105570:intron 55.0%
GCTGGCGGTTTCGAAACCGT+CGG + chr7_3:44129133-44129152 None:intergenic 60.0%
CTCGATAGCGACGGCGATGA+CGG - chr7_3:44129162-44129181 Msa1105570:three_prime_UTR 60.0%
AGGTAGCCCTAGTTGGAGCG+AGG - chr7_3:44129978-44129997 Msa1105570:intron 60.0%
! AAGGGGCTCTAGTCGGCGAA+TGG + chr7_3:44131637-44131656 None:intergenic 60.0%
! CAGCAGCAAGGGGCTCTAGT+CGG + chr7_3:44131644-44131663 None:intergenic 60.0%
!! ACCGTCGGAAGCGTCGTTGC+CGG + chr7_3:44129118-44129137 None:intergenic 65.0%
! GATAGCGACGGCGATGACGG+TGG - chr7_3:44129165-44129184 Msa1105570:three_prime_UTR 65.0%
CCATCCAACGCCACTGCCGC+CGG - chr7_3:44129096-44129115 Msa1105570:three_prime_UTR 70.0%
!! GTCGGAAGCGTCGTTGCCGG+CGG + chr7_3:44129115-44129134 None:intergenic 70.0%
GCCGGCAACGACGCTTCCGA+CGG - chr7_3:44129114-44129133 Msa1105570:three_prime_UTR 70.0%
! CCGGCGGCAGTGGCGTTGGA+TGG + chr7_3:44129099-44129118 None:intergenic 75.0%
GTTGCCGGCGGCAGTGGCGT+TGG + chr7_3:44129103-44129122 None:intergenic 75.0%
AGCGTCGTTGCCGGCGGCAG+TGG + chr7_3:44129109-44129128 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 44128913 44132818 44128913 ID=Msa1105570;Name=Msa1105570
chr7_3 mRNA 44128913 44132818 44128913 ID=Msa1105570-mRNA-1;Parent=Msa1105570;Name=Msa1105570-mRNA-1;_AED=0.07;_eAED=0.07;_QI=138|0.75|0.8|1|1|1|5|274|268
chr7_3 exon 44128913 44129302 44128913 ID=Msa1105570-mRNA-1:exon:9118;Parent=Msa1105570-mRNA-1
chr7_3 exon 44130035 44130148 44130035 ID=Msa1105570-mRNA-1:exon:9117;Parent=Msa1105570-mRNA-1
chr7_3 exon 44130646 44130772 44130646 ID=Msa1105570-mRNA-1:exon:9116;Parent=Msa1105570-mRNA-1
chr7_3 exon 44131040 44131201 44131040 ID=Msa1105570-mRNA-1:exon:9115;Parent=Msa1105570-mRNA-1
chr7_3 exon 44132393 44132818 44132393 ID=Msa1105570-mRNA-1:exon:9114;Parent=Msa1105570-mRNA-1
chr7_3 five_prime_UTR 44132681 44132818 44132681 ID=Msa1105570-mRNA-1:five_prime_utr;Parent=Msa1105570-mRNA-1
chr7_3 CDS 44132393 44132680 44132393 ID=Msa1105570-mRNA-1:cds;Parent=Msa1105570-mRNA-1
chr7_3 CDS 44131040 44131201 44131040 ID=Msa1105570-mRNA-1:cds;Parent=Msa1105570-mRNA-1
chr7_3 CDS 44130646 44130772 44130646 ID=Msa1105570-mRNA-1:cds;Parent=Msa1105570-mRNA-1
chr7_3 CDS 44130035 44130148 44130035 ID=Msa1105570-mRNA-1:cds;Parent=Msa1105570-mRNA-1
chr7_3 CDS 44129187 44129302 44129187 ID=Msa1105570-mRNA-1:cds;Parent=Msa1105570-mRNA-1
chr7_3 three_prime_UTR 44128913 44129186 44128913 ID=Msa1105570-mRNA-1:three_prime_utr;Parent=Msa1105570-mRNA-1
Gene Sequence

>Msa1105570

ATGGTAGTGATAGAGCAAGAGAACACCGACGATCGAAACGCGATTCCATCCAACGCCACTGCCGCCGGCAACGACGCTTCCGACGGTTTCGAAACCGCCAGCGAAGCTGATCTCGATAGCGACGGCGATGACGGTGGAGATATCAGCCGAGAAAAACAAGAGATTCTTGAGCAAACGAAGGAGCAAGAGGGAGAACAGGAACAAGATGTTGCTCAGAGAAGTGTTTCGTCTGAGGATGCTTTGATCAATGAAGAGAATGCTTTGATCAATGAATCGGAATTGAAACAGAAAGCATTGAGTGAAGCAAATGAAGCAAAAGTAGAAGGTAACAAACTTTTTGTAGATGGGAAGTATGAGGAGGCTTTATCGCAATATGAACATGCTTTACAAGTTGCACCAGACATGCCTTCATCTGTGGAAATACGCTCAATATGTCATGCAAACCGTGCTGGAAAATATGAAAATACAATTAAAGAATGCACAAAAGCATTGGAACTGAATCCTGCATATGTTAAAGCTTTGGTGAGAAGAGGAGAGGCTCATGAAAAGCTTGAACATTTTGAAGAGGCAATTGCTGATATGAAAAAGACCTTAGAAATTGATCCCTTAAATGGTCAAGCTGGGAAATCCATTCGCCGACTAGAGCCCCTTGCTGCTGTAAAACGGGAAAAAATGAAAGAAGAAATGATTGAAAAATTGAAAGAAATGGGCAATTCTGTATTGGGACGCTTTGGGATGAGCCTTGACAACTTCAAAGCAGTCCAAGATCCAAACACTGGTTCCTATTCTATCTCAATGGAACGCTAA

Protein sequence

>Msa1105570

MVVIEQENTDDRNAIPSNATAAGNDASDGFETASEADLDSDGDDGGDISREKQEILEQTKEQEGEQEQDVAQRSVSSEDALINEENALINESELKQKALSEANEAKVEGNKLFVDGKYEEALSQYEHALQVAPDMPSSVEIRSICHANRAGKYENTIKECTKALELNPAYVKALVRRGEAHEKLEHFEEAIADMKKTLEIDPLNGQAGKSIRRLEPLAAVKREKMKEEMIEKLKEMGNSVLGRFGMSLDNFKAVQDPNTGSYSISMER*