Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1105570 | XP_024627238.1 | 90.511 | 274 | 13 | 2 | 1 | 268 | 1 | 267 | 1.08e-158 | 452 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1105570 | sp|Q99614|TTC1_HUMAN | 43.333 | 180 | 94 | 2 | 93 | 266 | 107 | 284 | 1.52e-36 | 134 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1105570 | G7L2C4 | 90.511 | 274 | 13 | 2 | 1 | 268 | 1 | 267 | 5.17e-159 | 452 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1105530 | Msa1105570 | 0.948966 | 3.295638e-107 | -8.615850e-47 |
Msa1105570 | Msa1148920 | 0.842207 | 2.976859e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1105570 | MtrunA17_Chr7g0237741 | 90.511 | 274 | 13 | 2 | 1 | 268 | 1 | 267 | 9.95e-163 | 452 |
Msa1105570 | MtrunA17_Chr2g0323971 | 70.671 | 283 | 55 | 6 | 1 | 268 | 1 | 270 | 4.62e-128 | 364 |
Msa1105570 | MtrunA17_Chr4g0075481 | 38.393 | 112 | 58 | 2 | 99 | 202 | 36 | 144 | 9.13e-16 | 77.0 |
Msa1105570 | MtrunA17_Chr4g0027201 | 38.462 | 117 | 58 | 3 | 99 | 201 | 399 | 515 | 2.67e-12 | 66.6 |
Msa1105570 | MtrunA17_Chr2g0304261 | 35.433 | 127 | 74 | 4 | 86 | 207 | 27 | 150 | 4.85e-12 | 65.9 |
Msa1105570 | MtrunA17_Chr2g0316221 | 36.842 | 95 | 47 | 2 | 105 | 193 | 465 | 552 | 8.50e-12 | 65.1 |
Msa1105570 | MtrunA17_Chr8g0393041 | 30.818 | 159 | 81 | 4 | 66 | 217 | 457 | 593 | 2.41e-11 | 63.5 |
Msa1105570 | MtrunA17_Chr8g0339141 | 31.220 | 205 | 118 | 4 | 23 | 204 | 314 | 518 | 2.73e-11 | 63.5 |
Msa1105570 | MtrunA17_Chr1g0149561 | 33.913 | 115 | 70 | 3 | 99 | 207 | 37 | 151 | 6.94e-11 | 62.4 |
Msa1105570 | MtrunA17_Chr5g0425741 | 35.714 | 98 | 62 | 1 | 105 | 202 | 447 | 543 | 8.07e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1105570 | AT4G30480.2 | 54.007 | 287 | 101 | 5 | 1 | 267 | 1 | 276 | 3.35e-96 | 284 |
Msa1105570 | AT4G30480.1 | 44.860 | 214 | 87 | 5 | 1 | 194 | 1 | 203 | 3.59e-49 | 161 |
Msa1105570 | AT4G30480.3 | 37.805 | 164 | 77 | 4 | 1 | 150 | 1 | 153 | 4.46e-25 | 98.2 |
Msa1105570 | AT1G62390.1 | 36.800 | 125 | 68 | 2 | 99 | 215 | 48 | 169 | 3.88e-15 | 75.5 |
Msa1105570 | AT4G32070.2 | 36.066 | 122 | 73 | 3 | 99 | 215 | 48 | 169 | 1.16e-12 | 68.2 |
Msa1105570 | AT4G32070.1 | 36.066 | 122 | 73 | 3 | 99 | 215 | 48 | 169 | 1.16e-12 | 68.2 |
Msa1105570 | AT2G25290.2 | 33.065 | 124 | 78 | 3 | 99 | 217 | 49 | 172 | 4.41e-12 | 66.2 |
Msa1105570 | AT2G25290.3 | 33.065 | 124 | 78 | 3 | 99 | 217 | 49 | 172 | 4.41e-12 | 66.2 |
Msa1105570 | AT2G25290.4 | 33.065 | 124 | 78 | 3 | 99 | 217 | 49 | 172 | 4.41e-12 | 66.2 |
Msa1105570 | AT2G25290.1 | 33.065 | 124 | 78 | 3 | 99 | 217 | 49 | 172 | 4.41e-12 | 66.2 |
Msa1105570 | AT5G65160.1 | 34.066 | 91 | 59 | 1 | 104 | 194 | 472 | 561 | 1.34e-11 | 64.7 |
Msa1105570 | AT3G58620.2 | 27.703 | 148 | 88 | 3 | 78 | 213 | 419 | 559 | 3.36e-11 | 63.5 |
Msa1105570 | AT3G58620.1 | 27.703 | 148 | 88 | 3 | 78 | 213 | 419 | 559 | 3.59e-11 | 63.5 |
Msa1105570 | AT1G62740.1 | 34.951 | 103 | 66 | 1 | 102 | 204 | 2 | 103 | 3.86e-11 | 63.5 |
Msa1105570 | AT4G12400.1 | 35.922 | 103 | 65 | 1 | 102 | 204 | 2 | 103 | 5.35e-11 | 62.8 |
Msa1105570 | AT3G25230.1 | 36.424 | 151 | 75 | 4 | 102 | 238 | 400 | 543 | 5.50e-11 | 62.8 |
Msa1105570 | AT4G12400.2 | 35.922 | 103 | 65 | 1 | 102 | 204 | 2 | 103 | 6.47e-11 | 62.8 |
Msa1105570 | AT3G25230.2 | 36.424 | 151 | 75 | 4 | 102 | 238 | 400 | 543 | 6.67e-11 | 62.8 |
Find 65 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCCAGTTAATGTGCTTTA+AGG | 0.118268 | 7_3:-44128969 | Msa1105570:three_prime_UTR |
TTTCCCAGCTTGACCATTTA+AGG | 0.148479 | 7_3:+44130099 | None:intergenic |
TTTAAGCTTCGAGGTTCTTC+TGG | 0.237352 | 7_3:+44132779 | None:intergenic |
TTAGAAATTGATCCCTTAAA+TGG | 0.258466 | 7_3:-44130112 | Msa1105570:CDS |
AAACCTTAAAGCACATTAAC+TGG | 0.318411 | 7_3:+44128966 | None:intergenic |
AGGAACCAGTGTTTGGATCT+TGG | 0.328792 | 7_3:+44129210 | None:intergenic |
AATTCTGTATTGGGACGCTT+TGG | 0.332566 | 7_3:-44129260 | Msa1105570:CDS |
GAAGGAGCAAGAGGGAGAAC+AGG | 0.368826 | 7_3:-44132482 | Msa1105570:CDS |
AGCGTCGTTGCCGGCGGCAG+TGG | 0.379439 | 7_3:+44132603 | None:intergenic |
TTTGTGATGTATCTTCAAAA+AGG | 0.383870 | 7_3:-44129035 | Msa1105570:three_prime_UTR |
ATTTAAGGGATCAATTTCTA+AGG | 0.388641 | 7_3:+44130114 | None:intergenic |
GCAAATGAAGCAAAAGTAGA+AGG | 0.396741 | 7_3:-44131164 | Msa1105570:CDS |
AGAAATGGGCAATTCTGTAT+TGG | 0.397649 | 7_3:-44129270 | Msa1105570:CDS |
ATTCTGTATTGGGACGCTTT+GGG | 0.401053 | 7_3:-44129259 | Msa1105570:CDS |
GCCCCTTGCTGCTGTAAAAC+GGG | 0.405609 | 7_3:-44130059 | Msa1105570:CDS |
CAATGAATCGGAATTGAAAC+AGG | 0.408117 | 7_3:-44132392 | Msa1105570:intron |
TTCCCAGCTTGACCATTTAA+GGG | 0.418450 | 7_3:+44130100 | None:intergenic |
GAAATGGGCAATTCTGTATT+GGG | 0.422321 | 7_3:-44129269 | Msa1105570:CDS |
ATAGAATAGGAACCAGTGTT+TGG | 0.423050 | 7_3:+44129203 | None:intergenic |
AGCCCCTTGCTGCTGTAAAA+CGG | 0.433750 | 7_3:-44130060 | Msa1105570:CDS |
TTCGGTGTCAGAGACTTGTT+TGG | 0.434377 | 7_3:+44132692 | None:intergenic |
GCGTTCCATTGAGATAGAAT+AGG | 0.437193 | 7_3:+44129190 | None:intergenic |
ACCAAAGCTTTAACATATGC+AGG | 0.443256 | 7_3:+44130699 | None:intergenic |
ATAATAGTTTGAGACTTCAA+TGG | 0.444996 | 7_3:-44129086 | Msa1105570:three_prime_UTR |
TCCTGCATATGTTAAAGCTT+TGG | 0.447235 | 7_3:-44130700 | Msa1105570:CDS |
TCCACAGATGAAGGCATGTC+TGG | 0.448983 | 7_3:+44131071 | None:intergenic |
CCGGCGGCAGTGGCGTTGGA+TGG | 0.453485 | 7_3:+44132613 | None:intergenic |
ACCGTCGGAAGCGTCGTTGC+CGG | 0.458550 | 7_3:+44132594 | None:intergenic |
GATCCCTTAAATGGTCAAGC+TGG | 0.462169 | 7_3:-44130103 | Msa1105570:CDS |
GAGCGTATTTCCACAGATGA+AGG | 0.467315 | 7_3:+44131062 | None:intergenic |
GAATGCTTTGATCAATGAAT+CGG | 0.480599 | 7_3:-44132404 | Msa1105570:CDS |
CTACCATCTTCGAGAAGGTT+CGG | 0.482686 | 7_3:+44132674 | None:intergenic |
GTTGCCGGCGGCAGTGGCGT+TGG | 0.483157 | 7_3:+44132609 | None:intergenic |
TAAAGAATGCACAAAAGCAT+TGG | 0.487615 | 7_3:-44130730 | Msa1105570:CDS |
CCATCCAACGCCACTGCCGC+CGG | 0.494207 | 7_3:-44132613 | Msa1105570:CDS |
GGACTGCTTTGAAGTTGTCA+AGG | 0.494691 | 7_3:+44129231 | None:intergenic |
TGGTTCCTATTCTATCTCAA+TGG | 0.506189 | 7_3:-44129195 | Msa1105570:CDS |
GTTAAAGCTTTGGTGAGAAG+AGG | 0.519249 | 7_3:-44130690 | Msa1105570:CDS |
ACACCGAACCTTCTCGAAGA+TGG | 0.536276 | 7_3:-44132677 | Msa1105570:exon |
GTAATTGCACTAAGCAAGAA+AGG | 0.538228 | 7_3:-44129121 | Msa1105570:three_prime_UTR |
GCTATCGAGATCAGCTTCGC+TGG | 0.539161 | 7_3:+44132561 | None:intergenic |
CTCGATAGCGACGGCGATGA+CGG | 0.540826 | 7_3:-44132547 | Msa1105570:CDS |
GCCGGCAACGACGCTTCCGA+CGG | 0.542143 | 7_3:-44132595 | Msa1105570:CDS |
TGGAATCGCGTTTCGATCGT+CGG | 0.546354 | 7_3:+44132633 | None:intergenic |
AAAATGAAAGAAGAAATGAT+TGG | 0.548679 | 7_3:-44130034 | Msa1105570:intron |
ATCCCTTAAATGGTCAAGCT+GGG | 0.552846 | 7_3:-44130102 | Msa1105570:CDS |
GTCGGAAGCGTCGTTGCCGG+CGG | 0.566366 | 7_3:+44132597 | None:intergenic |
TCAGAGAAGTGTTTCGTCTG+AGG | 0.566568 | 7_3:-44132446 | Msa1105570:CDS |
TGTAGATGGGAAGTATGAGG+AGG | 0.584891 | 7_3:-44131129 | Msa1105570:CDS |
AATTATCAGTCTCCTTCACA+TGG | 0.589653 | 7_3:+44128996 | None:intergenic |
CAGCAGCAAGGGGCTCTAGT+CGG | 0.591364 | 7_3:+44130068 | None:intergenic |
AAGGGGCTCTAGTCGGCGAA+TGG | 0.604837 | 7_3:+44130075 | None:intergenic |
TGAGCAAACGAAGGAGCAAG+AGG | 0.609815 | 7_3:-44132491 | Msa1105570:CDS |
TTGTGATTGATTCCATGTGA+AGG | 0.612480 | 7_3:-44129008 | Msa1105570:three_prime_UTR |
ACCAGACATGCCTTCATCTG+TGG | 0.615100 | 7_3:-44131072 | Msa1105570:CDS |
AGCTTTGGTGAGAAGAGGAG+AGG | 0.620909 | 7_3:-44130685 | Msa1105570:CDS |
ATCGAGATCAGCTTCGCTGG+CGG | 0.625355 | 7_3:+44132564 | None:intergenic |
TATCACTACCATCTTCGAGA+AGG | 0.639913 | 7_3:+44132669 | None:intergenic |
GCTGGCGGTTTCGAAACCGT+CGG | 0.641137 | 7_3:+44132579 | None:intergenic |
GCAGTCCAAGATCCAAACAC+TGG | 0.648347 | 7_3:-44129215 | Msa1105570:CDS |
GAGCAAACGAAGGAGCAAGA+GGG | 0.650540 | 7_3:-44132490 | Msa1105570:CDS |
GATAGCGACGGCGATGACGG+TGG | 0.651321 | 7_3:-44132544 | Msa1105570:CDS |
GAAGCTGATCTCGATAGCGA+CGG | 0.668142 | 7_3:-44132556 | Msa1105570:CDS |
TAGTCATTATGAGAAAACAA+AGG | 0.685579 | 7_3:-44129058 | Msa1105570:three_prime_UTR |
AGAGATTCTTGAGCAAACGA+AGG | 0.691545 | 7_3:-44132500 | Msa1105570:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTCTTTTCAAAATATAAT+TGG | - | chr7_3:44131557-44131576 | Msa1105570:intron | 10.0% |
!! | ATATACAAACAAATATTAAA+AGG | + | chr7_3:44131728-44131747 | None:intergenic | 10.0% |
!!! | TTAAGTTTGGATTAATTTTT+GGG | - | chr7_3:44129549-44129568 | Msa1105570:intron | 15.0% |
!!! | TTATTTATTTTTGCATTGAA+AGG | - | chr7_3:44130023-44130042 | Msa1105570:intron | 15.0% |
!!! | TATTTATTTTTGCATTGAAA+GGG | - | chr7_3:44130024-44130043 | Msa1105570:intron | 15.0% |
!! | GAAAAATAATATTTACATCA+AGG | - | chr7_3:44131173-44131192 | Msa1105570:CDS | 15.0% |
!! | TGAAAAGAAAAAAAAAAAAC+TGG | + | chr7_3:44131548-44131567 | None:intergenic | 15.0% |
!!! | ATTTATTATTTTGTCTTTGT+AGG | - | chr7_3:44131746-44131765 | Msa1105570:intron | 15.0% |
!! | ATGGTATAAAATATAAATGA+AGG | + | chr7_3:44131805-44131824 | None:intergenic | 15.0% |
!!! | TTTGTTTTATGCATATATTT+TGG | - | chr7_3:44132149-44132168 | Msa1105570:intron | 15.0% |
!! | AAGAAACTTCAAAAAAAAAG+GGG | + | chr7_3:44129383-44129402 | None:intergenic | 20.0% |
!! | GAAGAAACTTCAAAAAAAAA+GGG | + | chr7_3:44129384-44129403 | None:intergenic | 20.0% |
!! | TGAAGAAACTTCAAAAAAAA+AGG | + | chr7_3:44129385-44129404 | None:intergenic | 20.0% |
!!! | TATGTGTTAGTTTTTGTTAA+TGG | - | chr7_3:44129420-44129439 | Msa1105570:intron | 20.0% |
!!! | GTTAAGTTTGGATTAATTTT+TGG | - | chr7_3:44129548-44129567 | Msa1105570:intron | 20.0% |
!!! | TAAATTGATTTTGACATGTT+TGG | - | chr7_3:44129584-44129603 | Msa1105570:intron | 20.0% |
!! | TTATACTTGATTATAACAAG+AGG | + | chr7_3:44130256-44130275 | None:intergenic | 20.0% |
!!! | TCTTGTTATAATCAAGTATA+AGG | - | chr7_3:44130255-44130274 | Msa1105570:intron | 20.0% |
!! | AAGTTGTAAATAACATAGTA+AGG | - | chr7_3:44131345-44131364 | Msa1105570:intron | 20.0% |
!! | AGTTGTAAATAACATAGTAA+GGG | - | chr7_3:44131346-44131365 | Msa1105570:intron | 20.0% |
!! | AAAATGAAAGAAGAAATGAT+TGG | - | chr7_3:44131675-44131694 | Msa1105570:intron | 20.0% |
!! | GAACTATATGAGAAATTATT+AGG | - | chr7_3:44131979-44131998 | Msa1105570:intron | 20.0% |
!!! | ATTACCTACCATTTAATTTT+TGG | - | chr7_3:44132261-44132280 | Msa1105570:intron | 20.0% |
!!! | ATTTTTATTTCGTGTGTTTG+AGG | + | chr7_3:44128957-44128976 | None:intergenic | 25.0% |
! | CAATACATGAAGAAAATTTC+TGG | - | chr7_3:44129515-44129534 | Msa1105570:intron | 25.0% |
! | AGTCAAAAATTCACATTTCA+AGG | + | chr7_3:44129863-44129882 | None:intergenic | 25.0% |
!!! | GAGTTTTTTTTCGAATAGAA+GGG | - | chr7_3:44130160-44130179 | Msa1105570:intron | 25.0% |
!! | ATAATCAAGTATAAGGTGTT+TGG | - | chr7_3:44130262-44130281 | Msa1105570:intron | 25.0% |
!! | TAATCAAGTATAAGGTGTTT+GGG | - | chr7_3:44130263-44130282 | Msa1105570:intron | 25.0% |
! | CAAATCCAAAATCAGAAAAA+AGG | + | chr7_3:44130450-44130469 | None:intergenic | 25.0% |
!! | GTAACAAACTTTTTGTAGAT+GGG | - | chr7_3:44130567-44130586 | Msa1105570:intron | 25.0% |
! | CATTACAGTATAATAGAAGA+AGG | + | chr7_3:44130718-44130737 | None:intergenic | 25.0% |
! | ATTTAACTAGTTGACATATG+CGG | + | chr7_3:44130780-44130799 | None:intergenic | 25.0% |
! | GTAAGTTCAAGCTTATATTA+AGG | - | chr7_3:44131086-44131105 | Msa1105570:CDS | 25.0% |
! | ATAGGAACCTTATATAAGTA+GGG | + | chr7_3:44131254-44131273 | None:intergenic | 25.0% |
! | AATAGGAACCTTATATAAGT+AGG | + | chr7_3:44131255-44131274 | None:intergenic | 25.0% |
!! | ATGTTATTTACAACTTGCTT+GGG | + | chr7_3:44131341-44131360 | None:intergenic | 25.0% |
!! | TATGTTATTTACAACTTGCT+TGG | + | chr7_3:44131342-44131361 | None:intergenic | 25.0% |
!! | TTTGATTTCTCAAACAAGAA+GGG | - | chr7_3:44131372-44131391 | Msa1105570:intron | 25.0% |
! | ATTTAAGGGATCAATTTCTA+AGG | + | chr7_3:44131598-44131617 | None:intergenic | 25.0% |
! | TTAGAAATTGATCCCTTAAA+TGG | - | chr7_3:44131597-44131616 | Msa1105570:intron | 25.0% |
!!! | ATTATTTTGTCTTTGTAGGA+TGG | - | chr7_3:44131750-44131769 | Msa1105570:intron | 25.0% |
! | AATCAGGAATATACTCAATT+GGG | + | chr7_3:44131848-44131867 | None:intergenic | 25.0% |
! | TAATCAGGAATATACTCAAT+TGG | + | chr7_3:44131849-44131868 | None:intergenic | 25.0% |
! | ATTTCTCATATAGTTCTTCT+AGG | + | chr7_3:44131975-44131994 | None:intergenic | 25.0% |
! | AATTACTACGTAAACATCAT+AGG | - | chr7_3:44132236-44132255 | Msa1105570:intron | 25.0% |
! | TATAACAGAATGTCATATGT+AGG | + | chr7_3:44132293-44132312 | None:intergenic | 25.0% |
! | TAAATAGACAAACTTGGTTA+CGG | + | chr7_3:44132350-44132369 | None:intergenic | 25.0% |
! | ATGAAGTAAATAGACAAACT+TGG | + | chr7_3:44132356-44132375 | None:intergenic | 25.0% |
! | TGCAGAAAAATTGAAAGAAA+TGG | - | chr7_3:44132424-44132443 | Msa1105570:CDS | 25.0% |
! | GCAGAAAAATTGAAAGAAAT+GGG | - | chr7_3:44132425-44132444 | Msa1105570:CDS | 25.0% |
!! | ATAATAGTTTGAGACTTCAA+TGG | - | chr7_3:44132623-44132642 | Msa1105570:CDS | 25.0% |
! | TAGTCATTATGAGAAAACAA+AGG | - | chr7_3:44132651-44132670 | Msa1105570:CDS | 25.0% |
! | TTTGTGATGTATCTTCAAAA+AGG | - | chr7_3:44132674-44132693 | Msa1105570:exon | 25.0% |
!!! | CAAGAATCTCTTGTTTTTCT+CGG | + | chr7_3:44129200-44129219 | None:intergenic | 30.0% |
GAATGCTTTGATCAATGAAT+CGG | - | chr7_3:44129305-44129324 | Msa1105570:intron | 30.0% | |
AGGTTCGATTTCCAAATTTA+GGG | - | chr7_3:44129337-44129356 | Msa1105570:intron | 30.0% | |
CTATAACGAAACCCTAAATT+TGG | + | chr7_3:44129351-44129370 | None:intergenic | 30.0% | |
AAAGCAGAAGAGTTATGTTT+AGG | - | chr7_3:44129958-44129977 | Msa1105570:intron | 30.0% | |
AAAACACATTAAAGCACAAG+AGG | - | chr7_3:44130097-44130116 | Msa1105570:CDS | 30.0% | |
!!! | TTTTTTCCGATAGTTCTAGT+TGG | - | chr7_3:44130120-44130139 | Msa1105570:CDS | 30.0% |
!!! | CGAGTTTTTTTTCGAATAGA+AGG | - | chr7_3:44130159-44130178 | Msa1105570:intron | 30.0% |
!!! | GGTAACCTTTTTTCTGATTT+TGG | - | chr7_3:44130442-44130461 | Msa1105570:intron | 30.0% |
! | GGTAACAAACTTTTTGTAGA+TGG | - | chr7_3:44130566-44130585 | Msa1105570:intron | 30.0% |
CAACTACAAACATGACATAA+GGG | + | chr7_3:44130881-44130900 | None:intergenic | 30.0% | |
ACAACTACAAACATGACATA+AGG | + | chr7_3:44130882-44130901 | None:intergenic | 30.0% | |
! | GTATTTTCATATTTTCCCTG+AGG | + | chr7_3:44130956-44130975 | None:intergenic | 30.0% |
! | TAAAGAATGCACAAAAGCAT+TGG | - | chr7_3:44130979-44130998 | Msa1105570:intron | 30.0% |
!! | AAAGCTTGAACATTTTGAAG+AGG | - | chr7_3:44131054-44131073 | Msa1105570:CDS | 30.0% |
TTCAAGCTTATATTAAGGCA+AGG | - | chr7_3:44131091-44131110 | Msa1105570:CDS | 30.0% | |
! | TGTTATTTACAACTTGCTTG+GGG | + | chr7_3:44131340-44131359 | None:intergenic | 30.0% |
! | CTTTGATTTCTCAAACAAGA+AGG | - | chr7_3:44131371-44131390 | Msa1105570:intron | 30.0% |
!!! | AGTCATTTTTGTCTTTCTCT+TGG | - | chr7_3:44131700-44131719 | Msa1105570:intron | 30.0% |
GGAAATTAGGAATACTCTAA+TGG | + | chr7_3:44131824-44131843 | None:intergenic | 30.0% | |
ATCAGGAATATACTCAATTG+GGG | + | chr7_3:44131847-44131866 | None:intergenic | 30.0% | |
TTGAGAACAAGTCAATAATC+AGG | + | chr7_3:44131864-44131883 | None:intergenic | 30.0% | |
!! | ATTATTGACTTGTTCTCAAG+TGG | - | chr7_3:44131865-44131884 | Msa1105570:intron | 30.0% |
TACGTGTAAGATAGAACATT+AGG | - | chr7_3:44131921-44131940 | Msa1105570:intron | 30.0% | |
ATTAGGAAATGCTTCTTGTT+AGG | - | chr7_3:44131938-44131957 | Msa1105570:intron | 30.0% | |
TTAGGAAATGCTTCTTGTTA+GGG | - | chr7_3:44131939-44131958 | Msa1105570:intron | 30.0% | |
AGGAAAATGTTAGATGTCAA+TGG | - | chr7_3:44131999-44132018 | Msa1105570:intron | 30.0% | |
TGACGTATAATCGAACATTA+TGG | - | chr7_3:44132035-44132054 | Msa1105570:intron | 30.0% | |
! | AAACCAAGTCTTATACTACT+AGG | + | chr7_3:44132089-44132108 | None:intergenic | 30.0% |
!! | GCATAAAACAAAGCATTTTC+AGG | + | chr7_3:44132141-44132160 | None:intergenic | 30.0% |
ATGGCCAAAAATTAAATGGT+AGG | + | chr7_3:44132268-44132287 | None:intergenic | 30.0% | |
AAACCTTAAAGCACATTAAC+TGG | + | chr7_3:44132746-44132765 | None:intergenic | 30.0% | |
CAATGAATCGGAATTGAAAC+AGG | - | chr7_3:44129317-44129336 | Msa1105570:intron | 35.0% | |
CAGGTTCGATTTCCAAATTT+AGG | - | chr7_3:44129336-44129355 | Msa1105570:intron | 35.0% | |
GGTTTAGTGAGTGTTAAGTT+TGG | - | chr7_3:44129536-44129555 | Msa1105570:intron | 35.0% | |
AATGAAGTCTAGCACAAACA+CGG | + | chr7_3:44129784-44129803 | None:intergenic | 35.0% | |
AATGTTGAGATCTTGAGCTT+TGG | - | chr7_3:44129837-44129856 | Msa1105570:intron | 35.0% | |
! | ATAGAAGGGTTTTCTGTTCA+TGG | - | chr7_3:44130174-44130193 | Msa1105570:intron | 35.0% |
TTTCTGTTCATGGCTTAAGT+TGG | - | chr7_3:44130184-44130203 | Msa1105570:intron | 35.0% | |
! | GCTTTCTTTTTCTCCACTAT+TGG | + | chr7_3:44130392-44130411 | None:intergenic | 35.0% |
AGCTTGTGCAACTAGTAATT+TGG | - | chr7_3:44130421-44130440 | Msa1105570:intron | 35.0% | |
GCAAATGAAGCAAAAGTAGA+AGG | - | chr7_3:44130545-44130564 | Msa1105570:intron | 35.0% | |
!! | TTTTGTAGATGGGAAGTATG+AGG | - | chr7_3:44130577-44130596 | Msa1105570:intron | 35.0% |
TATGCGGTAAAGCAAAATAC+AGG | + | chr7_3:44130764-44130783 | None:intergenic | 35.0% | |
ACATACGTCAAATATACCTC+AGG | - | chr7_3:44130937-44130956 | Msa1105570:intron | 35.0% | |
CATACGTCAAATATACCTCA+GGG | - | chr7_3:44130938-44130957 | Msa1105570:intron | 35.0% | |
TCCTGCATATGTTAAAGCTT+TGG | - | chr7_3:44131009-44131028 | Msa1105570:intron | 35.0% | |
! | ACCAAAGCTTTAACATATGC+AGG | + | chr7_3:44131013-44131032 | None:intergenic | 35.0% |
GTACCTTCCCTACTTATATA+AGG | - | chr7_3:44131244-44131263 | Msa1105570:intron | 35.0% | |
GAACCTTATATAAGTAGGGA+AGG | + | chr7_3:44131250-44131269 | None:intergenic | 35.0% | |
GTCTTGAAGGGAAATAGAAT+AGG | + | chr7_3:44131272-44131291 | None:intergenic | 35.0% | |
! | CTCCAGTTATCTGTTTGTTT+TGG | - | chr7_3:44131415-44131434 | Msa1105570:intron | 35.0% |
AGCCAAAACAAACAGATAAC+TGG | + | chr7_3:44131420-44131439 | None:intergenic | 35.0% | |
ACTGGTGAAACGAAAAGATA+CGG | + | chr7_3:44131530-44131549 | None:intergenic | 35.0% | |
TCAGGAATATACTCAATTGG+GGG | + | chr7_3:44131846-44131865 | None:intergenic | 35.0% | |
TAGGAAATGCTTCTTGTTAG+GGG | - | chr7_3:44131940-44131959 | Msa1105570:intron | 35.0% | |
! | AAGTCTTATACTACTAGGTG+GGG | + | chr7_3:44132084-44132103 | None:intergenic | 35.0% |
! | CAAGTCTTATACTACTAGGT+GGG | + | chr7_3:44132085-44132104 | None:intergenic | 35.0% |
! | TCCTTGCACATGTAATTTGT+TGG | - | chr7_3:44132179-44132198 | Msa1105570:intron | 35.0% |
! | TGACTTTTCTTAGATGCACT+TGG | - | chr7_3:44132209-44132228 | Msa1105570:intron | 35.0% |
! | GACTTTTCTTAGATGCACTT+GGG | - | chr7_3:44132210-44132229 | Msa1105570:intron | 35.0% |
GGCAATGGCCAAAAATTAAA+TGG | + | chr7_3:44132272-44132291 | None:intergenic | 35.0% | |
AGAATGTCATATGTAGGCAA+TGG | + | chr7_3:44132287-44132306 | None:intergenic | 35.0% | |
TCATCTGTCAAAGCAAATGA+TGG | + | chr7_3:44132393-44132412 | None:intergenic | 35.0% | |
AGAAATGGGCAATTCTGTAT+TGG | - | chr7_3:44132439-44132458 | Msa1105570:CDS | 35.0% | |
GAAATGGGCAATTCTGTATT+GGG | - | chr7_3:44132440-44132459 | Msa1105570:CDS | 35.0% | |
ATAGAATAGGAACCAGTGTT+TGG | + | chr7_3:44132509-44132528 | None:intergenic | 35.0% | |
TGGTTCCTATTCTATCTCAA+TGG | - | chr7_3:44132514-44132533 | Msa1105570:CDS | 35.0% | |
GTAATTGCACTAAGCAAGAA+AGG | - | chr7_3:44132588-44132607 | Msa1105570:CDS | 35.0% | |
! | TTGTGATTGATTCCATGTGA+AGG | - | chr7_3:44132701-44132720 | Msa1105570:five_prime_UTR | 35.0% |
AATTATCAGTCTCCTTCACA+TGG | + | chr7_3:44132716-44132735 | None:intergenic | 35.0% | |
CTTCCAGTTAATGTGCTTTA+AGG | - | chr7_3:44132740-44132759 | Msa1105570:five_prime_UTR | 35.0% | |
TTTAAGCTTCGAGGTTCTTC+TGG | + | chr7_3:44128933-44128952 | None:intergenic | 40.0% | |
!!! | GTTTGAGGTTTTAAGCTTCG+AGG | + | chr7_3:44128942-44128961 | None:intergenic | 40.0% |
TATCACTACCATCTTCGAGA+AGG | + | chr7_3:44129043-44129062 | None:intergenic | 40.0% | |
AGAGATTCTTGAGCAAACGA+AGG | - | chr7_3:44129209-44129228 | Msa1105570:CDS | 40.0% | |
!!! | TGTAGCACTGACACTTTTGA+TGG | - | chr7_3:44129631-44129650 | Msa1105570:intron | 40.0% |
! | CTTTTGATGGAATGCATGTC+CGG | - | chr7_3:44129644-44129663 | Msa1105570:intron | 40.0% |
CGATGTGTTAGTGTTGTGTT+TGG | - | chr7_3:44129755-44129774 | Msa1105570:intron | 40.0% | |
TATGTTTAGGTAGCCCTAGT+TGG | - | chr7_3:44129971-44129990 | Msa1105570:intron | 40.0% | |
!! | TTTCCGATAGTTCTAGTTGG+AGG | - | chr7_3:44130123-44130142 | Msa1105570:CDS | 40.0% |
!! | TTCCGATAGTTCTAGTTGGA+GGG | - | chr7_3:44130124-44130143 | Msa1105570:CDS | 40.0% |
!! | TGTTCATGGCTTAAGTTGGA+GGG | - | chr7_3:44130188-44130207 | Msa1105570:intron | 40.0% |
! | TCAAGTATAAGGTGTTTGGG+TGG | - | chr7_3:44130266-44130285 | Msa1105570:intron | 40.0% |
! | CAAGTATAAGGTGTTTGGGT+GGG | - | chr7_3:44130267-44130286 | Msa1105570:intron | 40.0% |
CGATAATCTCTCTCCAATAG+TGG | - | chr7_3:44130376-44130395 | Msa1105570:intron | 40.0% | |
! | AGTTTCAAAAGCACACAGCA+CGG | + | chr7_3:44130688-44130707 | None:intergenic | 40.0% |
!!! | GTGTGCTTTTGAAACTGGTA+TGG | - | chr7_3:44130692-44130711 | Msa1105570:CDS | 40.0% |
ATTCCAGATTAAGCTGCTAC+AGG | - | chr7_3:44130835-44130854 | Msa1105570:intron | 40.0% | |
TTCCAGATTAAGCTGCTACA+GGG | - | chr7_3:44130836-44130855 | Msa1105570:intron | 40.0% | |
! | GTTAAAGCTTTGGTGAGAAG+AGG | - | chr7_3:44131019-44131038 | Msa1105570:intron | 40.0% |
!! | CATTTTGAAGAGGCAATTGC+TGG | - | chr7_3:44131064-44131083 | Msa1105570:CDS | 40.0% |
AGTGCAAACTTCAGATGAGT+TGG | + | chr7_3:44131127-44131146 | None:intergenic | 40.0% | |
TACATGCGATACTTCAACCA+AGG | + | chr7_3:44131227-44131246 | None:intergenic | 40.0% | |
! | TTTACAACTTGCTTGGGGTT+GGG | + | chr7_3:44131335-44131354 | None:intergenic | 40.0% |
! | ATTTACAACTTGCTTGGGGT+TGG | + | chr7_3:44131336-44131355 | None:intergenic | 40.0% |
TGGTGAAACGAAAAGATACG+GGG | + | chr7_3:44131528-44131547 | None:intergenic | 40.0% | |
CTGGTGAAACGAAAAGATAC+GGG | + | chr7_3:44131529-44131548 | None:intergenic | 40.0% | |
ATCCCTTAAATGGTCAAGCT+GGG | - | chr7_3:44131607-44131626 | Msa1105570:intron | 40.0% | |
TTCCCAGCTTGACCATTTAA+GGG | + | chr7_3:44131612-44131631 | None:intergenic | 40.0% | |
TTTCCCAGCTTGACCATTTA+AGG | + | chr7_3:44131613-44131632 | None:intergenic | 40.0% | |
TACTCAATTGGGGGGAAATT+AGG | + | chr7_3:44131837-44131856 | None:intergenic | 40.0% | |
CAGGAATATACTCAATTGGG+GGG | + | chr7_3:44131845-44131864 | None:intergenic | 40.0% | |
! | CCAAGTCTTATACTACTAGG+TGG | + | chr7_3:44132086-44132105 | None:intergenic | 40.0% |
CCACCTAGTAGTATAAGACT+TGG | - | chr7_3:44132083-44132102 | Msa1105570:intron | 40.0% | |
GCCAACAAATTACATGTGCA+AGG | + | chr7_3:44132183-44132202 | None:intergenic | 40.0% | |
!! | GCACATGTAATTTGTTGGCT+AGG | - | chr7_3:44132184-44132203 | Msa1105570:intron | 40.0% |
AATTCTGTATTGGGACGCTT+TGG | - | chr7_3:44132449-44132468 | Msa1105570:CDS | 40.0% | |
ATTCTGTATTGGGACGCTTT+GGG | - | chr7_3:44132450-44132469 | Msa1105570:CDS | 40.0% | |
GCGTTCCATTGAGATAGAAT+AGG | + | chr7_3:44132522-44132541 | None:intergenic | 40.0% | |
!! | TTCGGTGTCAGAGACTTGTT+TGG | + | chr7_3:44129020-44129039 | None:intergenic | 45.0% |
CTACCATCTTCGAGAAGGTT+CGG | + | chr7_3:44129038-44129057 | None:intergenic | 45.0% | |
!! | TCAGAGAAGTGTTTCGTCTG+AGG | - | chr7_3:44129263-44129282 | Msa1105570:CDS | 45.0% |
CTCCCTCCAACTAGAACTAT+CGG | + | chr7_3:44130129-44130148 | None:intergenic | 45.0% | |
!! | CTGTTCATGGCTTAAGTTGG+AGG | - | chr7_3:44130187-44130206 | Msa1105570:intron | 45.0% |
ACGTTCATTGCATTCTGAGC+TGG | - | chr7_3:44130211-44130230 | Msa1105570:intron | 45.0% | |
! | TGTAGATGGGAAGTATGAGG+AGG | - | chr7_3:44130580-44130599 | Msa1105570:intron | 45.0% |
GAGCGTATTTCCACAGATGA+AGG | + | chr7_3:44130650-44130669 | None:intergenic | 45.0% | |
!!! | GTGCTGTGTGCTTTTGAAAC+TGG | - | chr7_3:44130687-44130706 | Msa1105570:CDS | 45.0% |
TTATGCCTGACACTCTTCCT+TGG | - | chr7_3:44131207-44131226 | Msa1105570:intron | 45.0% | |
!! | TTCAACCAAGGAAGAGTGTC+AGG | + | chr7_3:44131215-44131234 | None:intergenic | 45.0% |
! | TTACAACTTGCTTGGGGTTG+GGG | + | chr7_3:44131334-44131353 | None:intergenic | 45.0% |
! | TCTCAAACAAGAAGGGTGTG+TGG | - | chr7_3:44131379-44131398 | Msa1105570:intron | 45.0% |
GATCCCTTAAATGGTCAAGC+TGG | - | chr7_3:44131606-44131625 | Msa1105570:intron | 45.0% | |
! | TTCCCGTTTTACAGCAGCAA+GGG | + | chr7_3:44131655-44131674 | None:intergenic | 45.0% |
! | TTTCCCGTTTTACAGCAGCA+AGG | + | chr7_3:44131656-44131675 | None:intergenic | 45.0% |
!! | GGACTGCTTTGAAGTTGTCA+AGG | + | chr7_3:44132481-44132500 | None:intergenic | 45.0% |
AGGAACCAGTGTTTGGATCT+TGG | + | chr7_3:44132502-44132521 | None:intergenic | 45.0% | |
ACACCGAACCTTCTCGAAGA+TGG | - | chr7_3:44129032-44129051 | Msa1105570:three_prime_UTR | 50.0% | |
TGGAATCGCGTTTCGATCGT+CGG | + | chr7_3:44129079-44129098 | None:intergenic | 50.0% | |
GAAGCTGATCTCGATAGCGA+CGG | - | chr7_3:44129153-44129172 | Msa1105570:three_prime_UTR | 50.0% | |
TGAGCAAACGAAGGAGCAAG+AGG | - | chr7_3:44129218-44129237 | Msa1105570:CDS | 50.0% | |
GAGCAAACGAAGGAGCAAGA+GGG | - | chr7_3:44129219-44129238 | Msa1105570:CDS | 50.0% | |
! | GTCGTGTCAGTGTTGAACAC+CGG | + | chr7_3:44129666-44129685 | None:intergenic | 50.0% |
TAGTGACCTCGCTCCAACTA+GGG | + | chr7_3:44129987-44130006 | None:intergenic | 50.0% | |
TTAGTGACCTCGCTCCAACT+AGG | + | chr7_3:44129988-44130007 | None:intergenic | 50.0% | |
!! | CGATAGTTCTAGTTGGAGGG+AGG | - | chr7_3:44130127-44130146 | Msa1105570:CDS | 50.0% |
ACCAGACATGCCTTCATCTG+TGG | - | chr7_3:44130637-44130656 | Msa1105570:intron | 50.0% | |
! | TCCACAGATGAAGGCATGTC+TGG | + | chr7_3:44130641-44130660 | None:intergenic | 50.0% |
CACCCTGTAGCAGCTTAATC+TGG | + | chr7_3:44130841-44130860 | None:intergenic | 50.0% | |
! | AGCTTTGGTGAGAAGAGGAG+AGG | - | chr7_3:44131024-44131043 | Msa1105570:intron | 50.0% |
AGATCTCGTAGCCACGCTAT+CGG | + | chr7_3:44131294-44131313 | None:intergenic | 50.0% | |
GGTTGGGGTCTGTCTAAGTA+AGG | + | chr7_3:44131319-44131338 | None:intergenic | 50.0% | |
AGCCCCTTGCTGCTGTAAAA+CGG | - | chr7_3:44131649-44131668 | Msa1105570:intron | 50.0% | |
! | TCCCGTTTTACAGCAGCAAG+GGG | + | chr7_3:44131654-44131673 | None:intergenic | 50.0% |
GTCTTTGTAGGATGGTGCGT+TGG | - | chr7_3:44131758-44131777 | Msa1105570:intron | 50.0% | |
ACTAGGTGGGGTTGACTACA+TGG | + | chr7_3:44132072-44132091 | None:intergenic | 50.0% | |
GCAGTCCAAGATCCAAACAC+TGG | - | chr7_3:44132494-44132513 | Msa1105570:CDS | 50.0% | |
ATCGAGATCAGCTTCGCTGG+CGG | + | chr7_3:44129148-44129167 | None:intergenic | 55.0% | |
GCTATCGAGATCAGCTTCGC+TGG | + | chr7_3:44129151-44129170 | None:intergenic | 55.0% | |
GAAGGAGCAAGAGGGAGAAC+AGG | - | chr7_3:44129227-44129246 | Msa1105570:CDS | 55.0% | |
TCCCTTCAAGACCGATAGCG+TGG | - | chr7_3:44131280-44131299 | Msa1105570:intron | 55.0% | |
GCCACGCTATCGGTCTTGAA+GGG | + | chr7_3:44131284-44131303 | None:intergenic | 55.0% | |
AGCCACGCTATCGGTCTTGA+AGG | + | chr7_3:44131285-44131304 | None:intergenic | 55.0% | |
GCCCCTTGCTGCTGTAAAAC+GGG | - | chr7_3:44131650-44131669 | Msa1105570:intron | 55.0% | |
GCTGGCGGTTTCGAAACCGT+CGG | + | chr7_3:44129133-44129152 | None:intergenic | 60.0% | |
CTCGATAGCGACGGCGATGA+CGG | - | chr7_3:44129162-44129181 | Msa1105570:three_prime_UTR | 60.0% | |
AGGTAGCCCTAGTTGGAGCG+AGG | - | chr7_3:44129978-44129997 | Msa1105570:intron | 60.0% | |
! | AAGGGGCTCTAGTCGGCGAA+TGG | + | chr7_3:44131637-44131656 | None:intergenic | 60.0% |
! | CAGCAGCAAGGGGCTCTAGT+CGG | + | chr7_3:44131644-44131663 | None:intergenic | 60.0% |
!! | ACCGTCGGAAGCGTCGTTGC+CGG | + | chr7_3:44129118-44129137 | None:intergenic | 65.0% |
! | GATAGCGACGGCGATGACGG+TGG | - | chr7_3:44129165-44129184 | Msa1105570:three_prime_UTR | 65.0% |
CCATCCAACGCCACTGCCGC+CGG | - | chr7_3:44129096-44129115 | Msa1105570:three_prime_UTR | 70.0% | |
!! | GTCGGAAGCGTCGTTGCCGG+CGG | + | chr7_3:44129115-44129134 | None:intergenic | 70.0% |
GCCGGCAACGACGCTTCCGA+CGG | - | chr7_3:44129114-44129133 | Msa1105570:three_prime_UTR | 70.0% | |
! | CCGGCGGCAGTGGCGTTGGA+TGG | + | chr7_3:44129099-44129118 | None:intergenic | 75.0% |
GTTGCCGGCGGCAGTGGCGT+TGG | + | chr7_3:44129103-44129122 | None:intergenic | 75.0% | |
AGCGTCGTTGCCGGCGGCAG+TGG | + | chr7_3:44129109-44129128 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 44128913 | 44132818 | 44128913 | ID=Msa1105570;Name=Msa1105570 |
chr7_3 | mRNA | 44128913 | 44132818 | 44128913 | ID=Msa1105570-mRNA-1;Parent=Msa1105570;Name=Msa1105570-mRNA-1;_AED=0.07;_eAED=0.07;_QI=138|0.75|0.8|1|1|1|5|274|268 |
chr7_3 | exon | 44128913 | 44129302 | 44128913 | ID=Msa1105570-mRNA-1:exon:9118;Parent=Msa1105570-mRNA-1 |
chr7_3 | exon | 44130035 | 44130148 | 44130035 | ID=Msa1105570-mRNA-1:exon:9117;Parent=Msa1105570-mRNA-1 |
chr7_3 | exon | 44130646 | 44130772 | 44130646 | ID=Msa1105570-mRNA-1:exon:9116;Parent=Msa1105570-mRNA-1 |
chr7_3 | exon | 44131040 | 44131201 | 44131040 | ID=Msa1105570-mRNA-1:exon:9115;Parent=Msa1105570-mRNA-1 |
chr7_3 | exon | 44132393 | 44132818 | 44132393 | ID=Msa1105570-mRNA-1:exon:9114;Parent=Msa1105570-mRNA-1 |
chr7_3 | five_prime_UTR | 44132681 | 44132818 | 44132681 | ID=Msa1105570-mRNA-1:five_prime_utr;Parent=Msa1105570-mRNA-1 |
chr7_3 | CDS | 44132393 | 44132680 | 44132393 | ID=Msa1105570-mRNA-1:cds;Parent=Msa1105570-mRNA-1 |
chr7_3 | CDS | 44131040 | 44131201 | 44131040 | ID=Msa1105570-mRNA-1:cds;Parent=Msa1105570-mRNA-1 |
chr7_3 | CDS | 44130646 | 44130772 | 44130646 | ID=Msa1105570-mRNA-1:cds;Parent=Msa1105570-mRNA-1 |
chr7_3 | CDS | 44130035 | 44130148 | 44130035 | ID=Msa1105570-mRNA-1:cds;Parent=Msa1105570-mRNA-1 |
chr7_3 | CDS | 44129187 | 44129302 | 44129187 | ID=Msa1105570-mRNA-1:cds;Parent=Msa1105570-mRNA-1 |
chr7_3 | three_prime_UTR | 44128913 | 44129186 | 44128913 | ID=Msa1105570-mRNA-1:three_prime_utr;Parent=Msa1105570-mRNA-1 |
Gene Sequence |
Protein sequence |