Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105530 | XP_024627238.1 | 92.336 | 274 | 14 | 1 | 1 | 274 | 1 | 267 | 1.89e-166 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105530 | sp|Q99614|TTC1_HUMAN | 40.476 | 210 | 107 | 2 | 79 | 272 | 77 | 284 | 8.68e-39 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105530 | G7L2C4 | 92.336 | 274 | 14 | 1 | 1 | 274 | 1 | 267 | 9.05e-167 | 471 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052770 | Msa1105530 | 0.806179 | 9.326039e-50 | -8.615850e-47 |
| Msa1021540 | Msa1105530 | 0.813208 | 2.876053e-51 | -8.615850e-47 |
| Msa1105530 | Msa1105570 | 0.948966 | 3.295638e-107 | -8.615850e-47 |
| Msa1105530 | Msa1148920 | 0.841746 | 3.940956e-58 | -8.615850e-47 |
| Msa1105530 | Msa1173140 | 0.808947 | 2.411325e-50 | -8.615850e-47 |
| Msa1105530 | Msa1435370 | 0.816148 | 6.421075e-52 | -8.615850e-47 |
| Msa1105530 | Msa1440910 | 0.811177 | 7.977008e-51 | -8.615850e-47 |
| Msa0944550 | Msa1105530 | 0.803513 | 3.362789e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105530 | MtrunA17_Chr7g0237741 | 92.336 | 274 | 14 | 1 | 1 | 274 | 1 | 267 | 1.74e-170 | 471 |
| Msa1105530 | MtrunA17_Chr2g0323971 | 72.438 | 283 | 56 | 5 | 1 | 274 | 1 | 270 | 6.70e-136 | 384 |
| Msa1105530 | MtrunA17_Chr4g0075481 | 37.903 | 124 | 72 | 2 | 99 | 220 | 36 | 156 | 1.94e-18 | 85.1 |
| Msa1105530 | MtrunA17_Chr4g0027201 | 39.189 | 148 | 74 | 4 | 99 | 238 | 399 | 538 | 5.92e-18 | 83.6 |
| Msa1105530 | MtrunA17_Chr2g0316221 | 40.000 | 95 | 50 | 1 | 105 | 199 | 465 | 552 | 3.41e-17 | 81.3 |
| Msa1105530 | MtrunA17_Chr8g0339141 | 33.171 | 205 | 120 | 3 | 23 | 210 | 314 | 518 | 9.91e-16 | 77.0 |
| Msa1105530 | MtrunA17_Chr8g0377771 | 38.686 | 137 | 70 | 3 | 87 | 210 | 379 | 514 | 9.98e-15 | 73.9 |
| Msa1105530 | MtrunA17_Chr8g0393041 | 32.075 | 159 | 85 | 3 | 66 | 223 | 457 | 593 | 1.18e-14 | 73.6 |
| Msa1105530 | MtrunA17_Chr2g0311461 | 35.577 | 104 | 62 | 2 | 106 | 208 | 5 | 104 | 1.32e-14 | 72.0 |
| Msa1105530 | MtrunA17_Chr2g0304261 | 36.154 | 130 | 75 | 3 | 86 | 213 | 27 | 150 | 1.48e-14 | 73.6 |
| Msa1105530 | MtrunA17_Chr1g0149561 | 36.522 | 115 | 67 | 4 | 102 | 213 | 40 | 151 | 1.91e-14 | 73.2 |
| Msa1105530 | MtrunA17_Chr3g0124261 | 31.126 | 151 | 92 | 3 | 80 | 230 | 437 | 575 | 5.88e-14 | 71.6 |
| Msa1105530 | MtrunA17_Chr1g0152361 | 38.462 | 117 | 64 | 1 | 102 | 210 | 227 | 343 | 7.80e-14 | 70.9 |
| Msa1105530 | MtrunA17_Chr5g0425741 | 38.462 | 104 | 57 | 1 | 105 | 208 | 447 | 543 | 2.10e-13 | 70.1 |
| Msa1105530 | MtrunA17_Chr3g0115681 | 30.714 | 140 | 86 | 2 | 107 | 246 | 429 | 557 | 2.98e-13 | 69.7 |
| Msa1105530 | MtrunA17_Chr7g0234801 | 38.211 | 123 | 68 | 2 | 96 | 210 | 388 | 510 | 3.04e-13 | 69.3 |
| Msa1105530 | MtrunA17_Chr5g0398901 | 31.193 | 109 | 68 | 1 | 102 | 210 | 2 | 103 | 3.29e-13 | 69.3 |
| Msa1105530 | MtrunA17_Chr5g0398901 | 27.536 | 138 | 85 | 2 | 89 | 218 | 371 | 501 | 2.60e-11 | 63.5 |
| Msa1105530 | MtrunA17_Chr1g0159731 | 31.776 | 107 | 66 | 1 | 102 | 208 | 56 | 155 | 7.34e-13 | 65.9 |
| Msa1105530 | MtrunA17_Chr7g0255551 | 37.398 | 123 | 69 | 2 | 96 | 210 | 371 | 493 | 2.30e-12 | 66.6 |
| Msa1105530 | MtrunA17_Chr4g0019501 | 30.303 | 132 | 82 | 1 | 99 | 220 | 181 | 312 | 9.80e-12 | 64.7 |
| Msa1105530 | MtrunA17_Chr3g0097231 | 31.387 | 137 | 85 | 2 | 99 | 235 | 8 | 135 | 3.10e-11 | 63.2 |
| Msa1105530 | MtrunA17_Chr4g0025271 | 34.545 | 110 | 70 | 1 | 99 | 206 | 100 | 209 | 5.87e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105530 | AT4G30480.2 | 56.098 | 287 | 101 | 4 | 1 | 273 | 1 | 276 | 5.06e-104 | 304 |
| Msa1105530 | AT4G30480.1 | 47.664 | 214 | 87 | 4 | 1 | 200 | 1 | 203 | 3.15e-57 | 182 |
| Msa1105530 | AT4G30480.3 | 40.000 | 170 | 77 | 4 | 1 | 156 | 1 | 159 | 1.51e-30 | 112 |
| Msa1105530 | AT1G62390.1 | 37.600 | 125 | 73 | 2 | 99 | 221 | 48 | 169 | 5.48e-18 | 84.0 |
| Msa1105530 | AT3G58620.2 | 29.730 | 148 | 91 | 2 | 78 | 219 | 419 | 559 | 1.65e-16 | 79.7 |
| Msa1105530 | AT3G58620.1 | 29.730 | 148 | 91 | 2 | 78 | 219 | 419 | 559 | 1.70e-16 | 79.7 |
| Msa1105530 | AT3G25230.1 | 39.073 | 151 | 77 | 3 | 102 | 244 | 400 | 543 | 1.74e-15 | 76.6 |
| Msa1105530 | AT1G53300.1 | 29.688 | 128 | 83 | 1 | 90 | 217 | 453 | 573 | 1.88e-15 | 76.6 |
| Msa1105530 | AT3G25230.2 | 39.073 | 151 | 77 | 3 | 102 | 244 | 400 | 543 | 2.10e-15 | 76.3 |
| Msa1105530 | AT2G42580.1 | 35.789 | 95 | 54 | 1 | 105 | 199 | 461 | 548 | 8.95e-15 | 74.3 |
| Msa1105530 | AT1G56090.1 | 37.500 | 104 | 60 | 2 | 106 | 208 | 10 | 109 | 1.38e-14 | 72.4 |
| Msa1105530 | AT3G54010.1 | 34.167 | 120 | 71 | 2 | 96 | 207 | 394 | 513 | 1.39e-14 | 73.9 |
| Msa1105530 | AT5G65160.1 | 37.113 | 97 | 54 | 1 | 104 | 200 | 472 | 561 | 1.91e-14 | 73.6 |
| Msa1105530 | AT3G54010.2 | 34.167 | 120 | 71 | 2 | 96 | 207 | 304 | 423 | 2.21e-14 | 73.2 |
| Msa1105530 | AT4G32070.2 | 36.000 | 125 | 75 | 2 | 99 | 221 | 48 | 169 | 3.40e-14 | 72.8 |
| Msa1105530 | AT4G32070.1 | 36.000 | 125 | 75 | 2 | 99 | 221 | 48 | 169 | 3.40e-14 | 72.8 |
| Msa1105530 | AT1G56090.2 | 37.500 | 104 | 60 | 2 | 106 | 208 | 84 | 183 | 3.40e-14 | 72.0 |
| Msa1105530 | AT2G25290.2 | 33.071 | 127 | 80 | 2 | 99 | 223 | 49 | 172 | 1.01e-13 | 71.2 |
| Msa1105530 | AT2G25290.3 | 33.071 | 127 | 80 | 2 | 99 | 223 | 49 | 172 | 1.01e-13 | 71.2 |
| Msa1105530 | AT2G25290.4 | 33.071 | 127 | 80 | 2 | 99 | 223 | 49 | 172 | 1.01e-13 | 71.2 |
| Msa1105530 | AT2G25290.1 | 33.071 | 127 | 80 | 2 | 99 | 223 | 49 | 172 | 1.01e-13 | 71.2 |
| Msa1105530 | AT4G12400.1 | 34.862 | 109 | 64 | 1 | 102 | 210 | 2 | 103 | 1.15e-13 | 71.2 |
| Msa1105530 | AT4G12400.1 | 29.661 | 118 | 76 | 2 | 102 | 219 | 369 | 479 | 7.73e-12 | 65.5 |
| Msa1105530 | AT4G12400.2 | 34.862 | 109 | 64 | 1 | 102 | 210 | 2 | 103 | 1.27e-13 | 70.9 |
| Msa1105530 | AT4G12400.2 | 29.661 | 118 | 76 | 2 | 102 | 219 | 369 | 479 | 7.99e-12 | 65.5 |
| Msa1105530 | AT5G20360.1 | 31.056 | 161 | 95 | 4 | 89 | 247 | 113 | 259 | 1.62e-13 | 70.9 |
| Msa1105530 | AT5G20360.2 | 31.056 | 161 | 95 | 4 | 89 | 247 | 113 | 259 | 1.62e-13 | 70.9 |
| Msa1105530 | AT5G20360.3 | 31.056 | 161 | 95 | 4 | 89 | 247 | 103 | 249 | 1.68e-13 | 70.9 |
| Msa1105530 | AT5G20360.5 | 29.944 | 177 | 105 | 6 | 75 | 247 | 8 | 169 | 3.13e-13 | 70.1 |
| Msa1105530 | AT5G20360.6 | 29.944 | 177 | 105 | 6 | 75 | 247 | 8 | 169 | 3.13e-13 | 70.1 |
| Msa1105530 | AT5G20360.7 | 31.579 | 152 | 88 | 4 | 98 | 247 | 62 | 199 | 5.96e-13 | 68.9 |
| Msa1105530 | AT5G20360.4 | 31.579 | 152 | 88 | 4 | 98 | 247 | 62 | 199 | 5.96e-13 | 68.9 |
| Msa1105530 | AT3G14950.1 | 28.495 | 186 | 109 | 5 | 90 | 263 | 484 | 657 | 2.12e-12 | 67.4 |
| Msa1105530 | AT1G56440.1 | 26.415 | 212 | 123 | 6 | 58 | 265 | 50 | 232 | 2.23e-12 | 67.0 |
| Msa1105530 | AT1G62740.1 | 28.058 | 139 | 85 | 2 | 89 | 219 | 361 | 492 | 2.84e-12 | 67.0 |
| Msa1105530 | AT1G62740.1 | 32.110 | 109 | 67 | 1 | 102 | 210 | 2 | 103 | 8.62e-12 | 65.5 |
| Msa1105530 | AT1G56440.2 | 26.415 | 212 | 123 | 6 | 58 | 265 | 40 | 222 | 3.12e-12 | 66.6 |
| Msa1105530 | AT5G48570.1 | 33.562 | 146 | 82 | 2 | 96 | 233 | 404 | 542 | 3.22e-12 | 66.6 |
| Msa1105530 | AT5G21990.1 | 34.821 | 112 | 71 | 1 | 99 | 208 | 100 | 211 | 4.79e-12 | 66.2 |
| Msa1105530 | AT3G21640.1 | 32.716 | 162 | 85 | 6 | 99 | 247 | 176 | 326 | 5.39e-12 | 65.9 |
| Msa1105530 | AT3G17970.1 | 29.577 | 142 | 90 | 2 | 82 | 220 | 451 | 585 | 1.06e-11 | 65.1 |
| Msa1105530 | AT1G04190.1 | 26.543 | 162 | 104 | 4 | 106 | 267 | 19 | 165 | 2.34e-11 | 63.5 |
| Msa1105530 | AT1G12270.1 | 30.275 | 109 | 69 | 1 | 102 | 210 | 2 | 103 | 4.02e-11 | 63.5 |
Find 76 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCCAGCTTGACCATTTA+AGG | 0.148479 | 7_3:+44052666 | None:intergenic |
| TTTAAGCTTCGAGGTTCTTC+TGG | 0.237352 | 7_3:+44055350 | None:intergenic |
| TTAGAAATTGATCCCTTAAA+TGG | 0.258466 | 7_3:-44052679 | Msa1105530:CDS |
| TATTGGAATTGTTAACGTTT+TGG | 0.269201 | 7_3:-44050790 | Msa1105530:three_prime_UTR |
| CCTCATTAACAATCAAGTTT+TGG | 0.279865 | 7_3:+44050589 | None:intergenic |
| TTCACTATGAAAGCTGATAT+TGG | 0.304709 | 7_3:-44050807 | Msa1105530:three_prime_UTR |
| AGGAACCAGTGTTTGGATCT+TGG | 0.328792 | 7_3:+44051776 | None:intergenic |
| AATTCTGTATTGGGACGCTT+TGG | 0.332566 | 7_3:-44051826 | Msa1105530:CDS |
| AACATTGTTGGAACGACGTC+AGG | 0.356886 | 7_3:-44050850 | Msa1105530:three_prime_UTR |
| GTTAACATTGTACGTGGAAT+TGG | 0.359005 | 7_3:-44050617 | Msa1105530:three_prime_UTR |
| AGTCCATGTGTTACTGATAT+TGG | 0.365601 | 7_3:-44050715 | Msa1105530:three_prime_UTR |
| GAAGGAGCAAGAGGGAGAAC+AGG | 0.368826 | 7_3:-44055053 | Msa1105530:CDS |
| AGCGTCGTTGCCGGCGGCAG+TGG | 0.379439 | 7_3:+44055174 | None:intergenic |
| CCAAAACTTGATTGTTAATG+AGG | 0.380400 | 7_3:-44050589 | Msa1105530:three_prime_UTR |
| ATTTAAGGGATCAATTTCTA+AGG | 0.388641 | 7_3:+44052681 | None:intergenic |
| GTTTGTGTTACAGGTAATCT+TGG | 0.391363 | 7_3:-44050905 | Msa1105530:intron |
| GAAAGTGAGTTGAACATTGT+TGG | 0.394045 | 7_3:-44050862 | Msa1105530:three_prime_UTR |
| GCAAATGAAGCAAAAGTAGA+AGG | 0.396741 | 7_3:-44053733 | Msa1105530:CDS |
| AGAAATGGGCAATTCTGTAT+TGG | 0.397649 | 7_3:-44051836 | Msa1105530:CDS |
| ATTCTGTATTGGGACGCTTT+GGG | 0.401053 | 7_3:-44051825 | Msa1105530:CDS |
| GGTTAACATCAACACGTCTA+TGG | 0.402128 | 7_3:-44050660 | Msa1105530:three_prime_UTR |
| GCCCCTTGCTGCTGTAAAAC+GGG | 0.405609 | 7_3:-44052626 | Msa1105530:CDS |
| CAATGAATCGGAATTGAAAC+AGG | 0.408117 | 7_3:-44054963 | Msa1105530:intron |
| TTCCCAGCTTGACCATTTAA+GGG | 0.418450 | 7_3:+44052667 | None:intergenic |
| GAAATGGGCAATTCTGTATT+GGG | 0.422321 | 7_3:-44051835 | Msa1105530:CDS |
| ATAGAATAGGAACCAGTGTT+TGG | 0.423050 | 7_3:+44051769 | None:intergenic |
| AGCCCCTTGCTGCTGTAAAA+CGG | 0.433750 | 7_3:-44052627 | Msa1105530:CDS |
| TTCGGTGTCAGAGACTTGTT+TGG | 0.434377 | 7_3:+44055263 | None:intergenic |
| GCGTTCCATTGAGATAGAAT+AGG | 0.437193 | 7_3:+44051756 | None:intergenic |
| ACCAAAGCTTTAACATATGC+AGG | 0.443256 | 7_3:+44053267 | None:intergenic |
| ATAATAGTTTGAGACTTCAA+TGG | 0.444996 | 7_3:-44051652 | Msa1105530:three_prime_UTR |
| TCCTGCATATGTTAAAGCTT+TGG | 0.447235 | 7_3:-44053268 | Msa1105530:CDS |
| TCCACAGATGAAGGCATGTC+TGG | 0.448983 | 7_3:+44053640 | None:intergenic |
| CCGGCGGCAGTGGCGTTGGA+TGG | 0.453485 | 7_3:+44055184 | None:intergenic |
| ACCGTCGGAAGCGTCGTTGC+CGG | 0.458550 | 7_3:+44055165 | None:intergenic |
| GATCCCTTAAATGGTCAAGC+TGG | 0.462169 | 7_3:-44052670 | Msa1105530:CDS |
| GAGCGTATTTCCACAGATGA+AGG | 0.467315 | 7_3:+44053631 | None:intergenic |
| CACTTTCTACTTTATTTACA+CGG | 0.478429 | 7_3:+44050878 | None:intergenic |
| GAATGCTTTGATCAATGAAT+CGG | 0.480599 | 7_3:-44054975 | Msa1105530:CDS |
| CTACCATCTTCGAGAAGGTT+CGG | 0.482686 | 7_3:+44055245 | None:intergenic |
| GTTGCCGGCGGCAGTGGCGT+TGG | 0.483157 | 7_3:+44055180 | None:intergenic |
| TAAAGAATGCACAAAAGCAT+TGG | 0.487615 | 7_3:-44053298 | Msa1105530:CDS |
| CCATCCAACGCCACTGCCGC+CGG | 0.494207 | 7_3:-44055184 | Msa1105530:CDS |
| GGACTGCTTTGAAGTTGTCA+AGG | 0.494691 | 7_3:+44051797 | None:intergenic |
| TGGTTCCTATTCTATCTCAA+TGG | 0.506189 | 7_3:-44051761 | Msa1105530:CDS |
| GTTAAAGCTTTGGTGAGAAG+AGG | 0.519249 | 7_3:-44053258 | Msa1105530:CDS |
| TTGAAACTACATACAACTTG+TGG | 0.535753 | 7_3:-44050681 | Msa1105530:three_prime_UTR |
| ACACCGAACCTTCTCGAAGA+TGG | 0.536276 | 7_3:-44055248 | Msa1105530:exon |
| GTAATTGCACTAAGCAAGAA+AGG | 0.538228 | 7_3:-44051687 | Msa1105530:three_prime_UTR |
| GCTATCGAGATCAGCTTCGC+TGG | 0.539161 | 7_3:+44055132 | None:intergenic |
| CTCGATAGCGACGGCGATGA+CGG | 0.540826 | 7_3:-44055118 | Msa1105530:CDS |
| GCCGGCAACGACGCTTCCGA+CGG | 0.542143 | 7_3:-44055166 | Msa1105530:CDS |
| TGGAATCGCGTTTCGATCGT+CGG | 0.546354 | 7_3:+44055204 | None:intergenic |
| AAAATGAAAGAAGAAATGAT+TGG | 0.548679 | 7_3:-44052601 | Msa1105530:intron |
| ATCCCTTAAATGGTCAAGCT+GGG | 0.552846 | 7_3:-44052669 | Msa1105530:CDS |
| GTCGGAAGCGTCGTTGCCGG+CGG | 0.566366 | 7_3:+44055168 | None:intergenic |
| TCAGAGAAGTGTTTCGTCTG+AGG | 0.566568 | 7_3:-44055017 | Msa1105530:CDS |
| TGTAGATGGGAAGTATGAGG+AGG | 0.584891 | 7_3:-44053698 | Msa1105530:CDS |
| CAGCAGCAAGGGGCTCTAGT+CGG | 0.591364 | 7_3:+44052635 | None:intergenic |
| AAGGGGCTCTAGTCGGCGAA+TGG | 0.604837 | 7_3:+44052642 | None:intergenic |
| TGAGCAAACGAAGGAGCAAG+AGG | 0.609815 | 7_3:-44055062 | Msa1105530:CDS |
| ACCAGACATGCCTTCATCTG+TGG | 0.615100 | 7_3:-44053641 | Msa1105530:CDS |
| AGCTTTGGTGAGAAGAGGAG+AGG | 0.620909 | 7_3:-44053253 | Msa1105530:CDS |
| CATGTGTTACTGATATTGGT+TGG | 0.622104 | 7_3:-44050711 | Msa1105530:three_prime_UTR |
| ATCGAGATCAGCTTCGCTGG+CGG | 0.625355 | 7_3:+44055135 | None:intergenic |
| ACGTGAGTTAACATTGTACG+TGG | 0.634133 | 7_3:-44050623 | Msa1105530:three_prime_UTR |
| TATCACTACCATCTTCGAGA+AGG | 0.639913 | 7_3:+44055240 | None:intergenic |
| GCTGGCGGTTTCGAAACCGT+CGG | 0.641137 | 7_3:+44055150 | None:intergenic |
| CAACCAATATCAGTAACACA+TGG | 0.644045 | 7_3:+44050712 | None:intergenic |
| GCAGTCCAAGATCCAAACAC+TGG | 0.648347 | 7_3:-44051781 | Msa1105530:CDS |
| GAGCAAACGAAGGAGCAAGA+GGG | 0.650540 | 7_3:-44055061 | Msa1105530:CDS |
| GATAGCGACGGCGATGACGG+TGG | 0.651321 | 7_3:-44055115 | Msa1105530:CDS |
| ACATTGTTGGAACGACGTCA+GGG | 0.656560 | 7_3:-44050849 | Msa1105530:three_prime_UTR |
| GAAGCTGATCTCGATAGCGA+CGG | 0.668142 | 7_3:-44055127 | Msa1105530:CDS |
| TAGTCATTATGAGAAAACAA+AGG | 0.685579 | 7_3:-44051624 | Msa1105530:intron |
| AGAGATTCTTGAGCAAACGA+AGG | 0.691545 | 7_3:-44055071 | Msa1105530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATATTTACATCAA+GGG | - | chr7_3:44052853-44052872 | Msa1105530:intron | 10.0% |
| !!! | TTTTCTTTTCAAAATATAAT+TGG | - | chr7_3:44053237-44053256 | Msa1105530:CDS | 10.0% |
| !! | ATATACAAACAAATATTAAA+AGG | + | chr7_3:44053408-44053427 | None:intergenic | 10.0% |
| !!! | TTAAGTTTGGATTAATTTTT+GGG | - | chr7_3:44051225-44051244 | Msa1105530:intron | 15.0% |
| !!! | TTATTTATTTTTGCATTGAA+AGG | - | chr7_3:44051699-44051718 | Msa1105530:three_prime_UTR | 15.0% |
| !!! | TATTTATTTTTGCATTGAAA+GGG | - | chr7_3:44051700-44051719 | Msa1105530:three_prime_UTR | 15.0% |
| !! | GAAAAATAATATTTACATCA+AGG | - | chr7_3:44052852-44052871 | Msa1105530:intron | 15.0% |
| !! | TGAAAAGAAAAAAAAAAAAC+TGG | + | chr7_3:44053228-44053247 | None:intergenic | 15.0% |
| !!! | ATTTATTATTTTGTCTTTGT+AGG | - | chr7_3:44053426-44053445 | Msa1105530:intron | 15.0% |
| !! | ATGGTATAAAATATAAATGA+AGG | + | chr7_3:44053485-44053504 | None:intergenic | 15.0% |
| !!! | TTTGTTTTATGCATATATTT+TGG | - | chr7_3:44053830-44053849 | Msa1105530:intron | 15.0% |
| !!! | AAGTTTTGCTTTTTTTTTAA+GGG | + | chr7_3:44054886-44054905 | None:intergenic | 15.0% |
| !! | AAGAAACTTCAAAAAAAAAG+GGG | + | chr7_3:44051059-44051078 | None:intergenic | 20.0% |
| !! | GAAGAAACTTCAAAAAAAAA+GGG | + | chr7_3:44051060-44051079 | None:intergenic | 20.0% |
| !! | TGAAGAAACTTCAAAAAAAA+AGG | + | chr7_3:44051061-44051080 | None:intergenic | 20.0% |
| !!! | TATGTGTTAGTTTTTGTTAA+TGG | - | chr7_3:44051096-44051115 | Msa1105530:intron | 20.0% |
| !!! | GTTAAGTTTGGATTAATTTT+TGG | - | chr7_3:44051224-44051243 | Msa1105530:intron | 20.0% |
| !!! | TAAATTGATTTTGACATGTT+TGG | - | chr7_3:44051260-44051279 | Msa1105530:intron | 20.0% |
| !! | TTATACTTGATTATAACAAG+AGG | + | chr7_3:44051933-44051952 | None:intergenic | 20.0% |
| !!! | TCTTGTTATAATCAAGTATA+AGG | - | chr7_3:44051932-44051951 | Msa1105530:intron | 20.0% |
| !! | AAGTTGTAAATAACATAGTA+AGG | - | chr7_3:44053025-44053044 | Msa1105530:intron | 20.0% |
| !! | AGTTGTAAATAACATAGTAA+GGG | - | chr7_3:44053026-44053045 | Msa1105530:intron | 20.0% |
| !! | AAAATGAAAGAAGAAATGAT+TGG | - | chr7_3:44053355-44053374 | Msa1105530:intron | 20.0% |
| !! | GAACTATATGAGAAATTATT+AGG | - | chr7_3:44053659-44053678 | Msa1105530:CDS | 20.0% |
| !!! | ATTACCTACCATTTAATTTT+TGG | - | chr7_3:44053942-44053961 | Msa1105530:intron | 20.0% |
| !!! | AGTTTTGCTTTTTTTTTAAG+GGG | + | chr7_3:44054885-44054904 | None:intergenic | 20.0% |
| !!! | CAAGTTTTGCTTTTTTTTTA+AGG | + | chr7_3:44054887-44054906 | None:intergenic | 20.0% |
| !! | AAAAGTGACATACATAAAAA+CGG | + | chr7_3:44055208-44055227 | None:intergenic | 20.0% |
| !!! | ATTTTTATTTCGTGTGTTTG+AGG | + | chr7_3:44050633-44050652 | None:intergenic | 25.0% |
| ! | CAATACATGAAGAAAATTTC+TGG | - | chr7_3:44051191-44051210 | Msa1105530:intron | 25.0% |
| ! | AGTCAAAAATTCACATTTCA+AGG | + | chr7_3:44051539-44051558 | None:intergenic | 25.0% |
| !!! | GAGTTTTTTTTCGAATAGAA+GGG | - | chr7_3:44051837-44051856 | Msa1105530:CDS | 25.0% |
| !! | ATAATCAAGTATAAGGTGTT+TGG | - | chr7_3:44051939-44051958 | Msa1105530:intron | 25.0% |
| !! | TAATCAAGTATAAGGTGTTT+GGG | - | chr7_3:44051940-44051959 | Msa1105530:intron | 25.0% |
| ! | CAAATCCAAAATCAGAAAAA+AGG | + | chr7_3:44052128-44052147 | None:intergenic | 25.0% |
| !! | GTAACAAACTTTTTGTAGAT+GGG | - | chr7_3:44052245-44052264 | Msa1105530:intron | 25.0% |
| ! | CATTACAGTATAATAGAAGA+AGG | + | chr7_3:44052397-44052416 | None:intergenic | 25.0% |
| ! | ATTTAACTAGTTGACATATG+CGG | + | chr7_3:44052459-44052478 | None:intergenic | 25.0% |
| ! | GTAAGTTCAAGCTTATATTA+AGG | - | chr7_3:44052765-44052784 | Msa1105530:intron | 25.0% |
| ! | ATAGGAACCTTATATAAGTA+GGG | + | chr7_3:44052934-44052953 | None:intergenic | 25.0% |
| ! | AATAGGAACCTTATATAAGT+AGG | + | chr7_3:44052935-44052954 | None:intergenic | 25.0% |
| !! | ATGTTATTTACAACTTGCTT+GGG | + | chr7_3:44053021-44053040 | None:intergenic | 25.0% |
| !! | TATGTTATTTACAACTTGCT+TGG | + | chr7_3:44053022-44053041 | None:intergenic | 25.0% |
| !! | TTTGATTTCTCAAACAAGAA+GGG | - | chr7_3:44053052-44053071 | Msa1105530:intron | 25.0% |
| ! | ATTTAAGGGATCAATTTCTA+AGG | + | chr7_3:44053278-44053297 | None:intergenic | 25.0% |
| ! | TTAGAAATTGATCCCTTAAA+TGG | - | chr7_3:44053277-44053296 | Msa1105530:CDS | 25.0% |
| !!! | ATTATTTTGTCTTTGTAGGA+TGG | - | chr7_3:44053430-44053449 | Msa1105530:intron | 25.0% |
| ! | AATCAGGAATATACTCAATT+GGG | + | chr7_3:44053528-44053547 | None:intergenic | 25.0% |
| ! | TAATCAGGAATATACTCAAT+TGG | + | chr7_3:44053529-44053548 | None:intergenic | 25.0% |
| ! | ATTTCTCATATAGTTCTTCT+AGG | + | chr7_3:44053655-44053674 | None:intergenic | 25.0% |
| ! | AATTACTACGTAAACATCAT+AGG | - | chr7_3:44053917-44053936 | Msa1105530:intron | 25.0% |
| ! | TATAACAGAATGTCATATGT+AGG | + | chr7_3:44053974-44053993 | None:intergenic | 25.0% |
| ! | TAAATAGACAAACTTGGTTA+CGG | + | chr7_3:44054031-44054050 | None:intergenic | 25.0% |
| ! | ATGAAGTAAATAGACAAACT+TGG | + | chr7_3:44054037-44054056 | None:intergenic | 25.0% |
| ! | TGCAGAAAAATTGAAAGAAA+TGG | - | chr7_3:44054105-44054124 | Msa1105530:intron | 25.0% |
| ! | GCAGAAAAATTGAAAGAAAT+GGG | - | chr7_3:44054106-44054125 | Msa1105530:intron | 25.0% |
| !! | ATAATAGTTTGAGACTTCAA+TGG | - | chr7_3:44054304-44054323 | Msa1105530:intron | 25.0% |
| ! | TAGTCATTATGAGAAAACAA+AGG | - | chr7_3:44054332-44054351 | Msa1105530:intron | 25.0% |
| ! | TTTGTGATGTATCTTCAAAA+AGG | - | chr7_3:44054355-44054374 | Msa1105530:intron | 25.0% |
| !! | CACTTTCTACTTTATTTACA+CGG | + | chr7_3:44055081-44055100 | None:intergenic | 25.0% |
| !! | TATTGGAATTGTTAACGTTT+TGG | - | chr7_3:44055166-44055185 | Msa1105530:CDS | 25.0% |
| !!! | CAAGAATCTCTTGTTTTTCT+CGG | + | chr7_3:44050876-44050895 | None:intergenic | 30.0% |
| GAATGCTTTGATCAATGAAT+CGG | - | chr7_3:44050981-44051000 | Msa1105530:intron | 30.0% | |
| AGGTTCGATTTCCAAATTTA+GGG | - | chr7_3:44051013-44051032 | Msa1105530:intron | 30.0% | |
| CTATAACGAAACCCTAAATT+TGG | + | chr7_3:44051027-44051046 | None:intergenic | 30.0% | |
| AAAGCAGAAGAGTTATGTTT+AGG | - | chr7_3:44051634-44051653 | Msa1105530:three_prime_UTR | 30.0% | |
| AAAACACATTAAAGCACAAG+AGG | - | chr7_3:44051773-44051792 | Msa1105530:CDS | 30.0% | |
| !!! | TTTTTTCCGATAGTTCTAGT+TGG | - | chr7_3:44051797-44051816 | Msa1105530:CDS | 30.0% |
| !!! | CGAGTTTTTTTTCGAATAGA+AGG | - | chr7_3:44051836-44051855 | Msa1105530:CDS | 30.0% |
| !!! | GGTAACCTTTTTTCTGATTT+TGG | - | chr7_3:44052120-44052139 | Msa1105530:intron | 30.0% |
| ! | GGTAACAAACTTTTTGTAGA+TGG | - | chr7_3:44052244-44052263 | Msa1105530:intron | 30.0% |
| CAACTACAAACATGACATAA+GGG | + | chr7_3:44052560-44052579 | None:intergenic | 30.0% | |
| ACAACTACAAACATGACATA+AGG | + | chr7_3:44052561-44052580 | None:intergenic | 30.0% | |
| ! | GTATTTTCATATTTTCCCTG+AGG | + | chr7_3:44052635-44052654 | None:intergenic | 30.0% |
| ! | TAAAGAATGCACAAAAGCAT+TGG | - | chr7_3:44052658-44052677 | Msa1105530:CDS | 30.0% |
| !! | AAAGCTTGAACATTTTGAAG+AGG | - | chr7_3:44052733-44052752 | Msa1105530:intron | 30.0% |
| TTCAAGCTTATATTAAGGCA+AGG | - | chr7_3:44052770-44052789 | Msa1105530:intron | 30.0% | |
| ! | TGTTATTTACAACTTGCTTG+GGG | + | chr7_3:44053020-44053039 | None:intergenic | 30.0% |
| ! | CTTTGATTTCTCAAACAAGA+AGG | - | chr7_3:44053051-44053070 | Msa1105530:intron | 30.0% |
| !!! | AGTCATTTTTGTCTTTCTCT+TGG | - | chr7_3:44053380-44053399 | Msa1105530:intron | 30.0% |
| GGAAATTAGGAATACTCTAA+TGG | + | chr7_3:44053504-44053523 | None:intergenic | 30.0% | |
| ATCAGGAATATACTCAATTG+GGG | + | chr7_3:44053527-44053546 | None:intergenic | 30.0% | |
| TTGAGAACAAGTCAATAATC+AGG | + | chr7_3:44053544-44053563 | None:intergenic | 30.0% | |
| !! | ATTATTGACTTGTTCTCAAG+TGG | - | chr7_3:44053545-44053564 | Msa1105530:intron | 30.0% |
| TACGTGTAAGATAGAACATT+AGG | - | chr7_3:44053601-44053620 | Msa1105530:CDS | 30.0% | |
| ATTAGGAAATGCTTCTTGTT+AGG | - | chr7_3:44053618-44053637 | Msa1105530:CDS | 30.0% | |
| TTAGGAAATGCTTCTTGTTA+GGG | - | chr7_3:44053619-44053638 | Msa1105530:CDS | 30.0% | |
| AGGAAAATGTTAGATGTCAA+TGG | - | chr7_3:44053679-44053698 | Msa1105530:CDS | 30.0% | |
| TGACGTATAATCGAACATTA+TGG | - | chr7_3:44053716-44053735 | Msa1105530:CDS | 30.0% | |
| ! | AAACCAAGTCTTATACTACT+AGG | + | chr7_3:44053770-44053789 | None:intergenic | 30.0% |
| !! | GCATAAAACAAAGCATTTTC+AGG | + | chr7_3:44053822-44053841 | None:intergenic | 30.0% |
| ATGGCCAAAAATTAAATGGT+AGG | + | chr7_3:44053949-44053968 | None:intergenic | 30.0% | |
| AAACCTTAAAGCACATTAAC+TGG | + | chr7_3:44054427-44054446 | None:intergenic | 30.0% | |
| GTCTTCTCAACACTATTATT+TGG | - | chr7_3:44054533-44054552 | Msa1105530:intron | 30.0% | |
| ! | TTTTCAACACTTTCCCATAT+TGG | + | chr7_3:44054613-44054632 | None:intergenic | 30.0% |
| ! | GTATTTTATGATGTTCCTTG+TGG | - | chr7_3:44054645-44054664 | Msa1105530:intron | 30.0% |
| AATTAACTGTTCCTTCATGA+AGG | - | chr7_3:44054682-44054701 | Msa1105530:intron | 30.0% | |
| ATTAACTGTTCCTTCATGAA+GGG | - | chr7_3:44054683-44054702 | Msa1105530:intron | 30.0% | |
| TGAGCAAAGGTTTAATAAAG+GGG | + | chr7_3:44054844-44054863 | None:intergenic | 30.0% | |
| CTGAGCAAAGGTTTAATAAA+GGG | + | chr7_3:44054845-44054864 | None:intergenic | 30.0% | |
| TTGAGCAGATGAAAAATTGA+GGG | + | chr7_3:44054928-44054947 | None:intergenic | 30.0% | |
| TTTGAGCAGATGAAAAATTG+AGG | + | chr7_3:44054929-44054948 | None:intergenic | 30.0% | |
| TTCACTATGAAAGCTGATAT+TGG | - | chr7_3:44055149-44055168 | Msa1105530:CDS | 30.0% | |
| TTGAAACTACATACAACTTG+TGG | - | chr7_3:44055275-44055294 | Msa1105530:five_prime_UTR | 30.0% | |
| ! | CCTCATTAACAATCAAGTTT+TGG | + | chr7_3:44055370-44055389 | None:intergenic | 30.0% |
| CAATGAATCGGAATTGAAAC+AGG | - | chr7_3:44050993-44051012 | Msa1105530:intron | 35.0% | |
| CAGGTTCGATTTCCAAATTT+AGG | - | chr7_3:44051012-44051031 | Msa1105530:intron | 35.0% | |
| GGTTTAGTGAGTGTTAAGTT+TGG | - | chr7_3:44051212-44051231 | Msa1105530:intron | 35.0% | |
| AATGAAGTCTAGCACAAACA+CGG | + | chr7_3:44051460-44051479 | None:intergenic | 35.0% | |
| AATGTTGAGATCTTGAGCTT+TGG | - | chr7_3:44051513-44051532 | Msa1105530:intron | 35.0% | |
| ! | ATAGAAGGGTTTTCTGTTCA+TGG | - | chr7_3:44051851-44051870 | Msa1105530:intron | 35.0% |
| TTTCTGTTCATGGCTTAAGT+TGG | - | chr7_3:44051861-44051880 | Msa1105530:intron | 35.0% | |
| ! | GCTTTCTTTTTCTCCACTAT+TGG | + | chr7_3:44052070-44052089 | None:intergenic | 35.0% |
| AGCTTGTGCAACTAGTAATT+TGG | - | chr7_3:44052099-44052118 | Msa1105530:intron | 35.0% | |
| GCAAATGAAGCAAAAGTAGA+AGG | - | chr7_3:44052223-44052242 | Msa1105530:intron | 35.0% | |
| !! | TTTTGTAGATGGGAAGTATG+AGG | - | chr7_3:44052255-44052274 | Msa1105530:intron | 35.0% |
| !!! | TGTGCTTTTTGAAACTGGTA+TGG | - | chr7_3:44052371-44052390 | Msa1105530:intron | 35.0% |
| TATGCGGTAAAGCAAAATAC+AGG | + | chr7_3:44052443-44052462 | None:intergenic | 35.0% | |
| ACATACGTCAAATATACCTC+AGG | - | chr7_3:44052616-44052635 | Msa1105530:CDS | 35.0% | |
| CATACGTCAAATATACCTCA+GGG | - | chr7_3:44052617-44052636 | Msa1105530:CDS | 35.0% | |
| TCCTGCATATGTTAAAGCTT+TGG | - | chr7_3:44052688-44052707 | Msa1105530:CDS | 35.0% | |
| ! | ACCAAAGCTTTAACATATGC+AGG | + | chr7_3:44052692-44052711 | None:intergenic | 35.0% |
| GTACCTTCCCTACTTATATA+AGG | - | chr7_3:44052924-44052943 | Msa1105530:intron | 35.0% | |
| GAACCTTATATAAGTAGGGA+AGG | + | chr7_3:44052930-44052949 | None:intergenic | 35.0% | |
| GTCTTGAAGGGAAATAGAAT+AGG | + | chr7_3:44052952-44052971 | None:intergenic | 35.0% | |
| ! | CTCCAGTTATCTGTTTGTTT+TGG | - | chr7_3:44053095-44053114 | Msa1105530:intron | 35.0% |
| AGCCAAAACAAACAGATAAC+TGG | + | chr7_3:44053100-44053119 | None:intergenic | 35.0% | |
| ACTGGTGAAACGAAAAGATA+CGG | + | chr7_3:44053210-44053229 | None:intergenic | 35.0% | |
| TCAGGAATATACTCAATTGG+GGG | + | chr7_3:44053526-44053545 | None:intergenic | 35.0% | |
| TAGGAAATGCTTCTTGTTAG+GGG | - | chr7_3:44053620-44053639 | Msa1105530:CDS | 35.0% | |
| ! | AAGTCTTATACTACTAGGTG+GGG | + | chr7_3:44053765-44053784 | None:intergenic | 35.0% |
| ! | CAAGTCTTATACTACTAGGT+GGG | + | chr7_3:44053766-44053785 | None:intergenic | 35.0% |
| ! | TCCTTGCACATGTAATTTGT+TGG | - | chr7_3:44053860-44053879 | Msa1105530:intron | 35.0% |
| ! | TGACTTTTCTTAGATGCACT+TGG | - | chr7_3:44053890-44053909 | Msa1105530:intron | 35.0% |
| ! | GACTTTTCTTAGATGCACTT+GGG | - | chr7_3:44053891-44053910 | Msa1105530:intron | 35.0% |
| GGCAATGGCCAAAAATTAAA+TGG | + | chr7_3:44053953-44053972 | None:intergenic | 35.0% | |
| AGAATGTCATATGTAGGCAA+TGG | + | chr7_3:44053968-44053987 | None:intergenic | 35.0% | |
| TCATCTGTCAAAGCAAATGA+TGG | + | chr7_3:44054074-44054093 | None:intergenic | 35.0% | |
| AGAAATGGGCAATTCTGTAT+TGG | - | chr7_3:44054120-44054139 | Msa1105530:intron | 35.0% | |
| GAAATGGGCAATTCTGTATT+GGG | - | chr7_3:44054121-44054140 | Msa1105530:intron | 35.0% | |
| ATAGAATAGGAACCAGTGTT+TGG | + | chr7_3:44054190-44054209 | None:intergenic | 35.0% | |
| TGGTTCCTATTCTATCTCAA+TGG | - | chr7_3:44054195-44054214 | Msa1105530:intron | 35.0% | |
| GTAATTGCACTAAGCAAGAA+AGG | - | chr7_3:44054269-44054288 | Msa1105530:intron | 35.0% | |
| ! | TTGTGATTGATTCCATGTGA+AGG | - | chr7_3:44054382-44054401 | Msa1105530:intron | 35.0% |
| AATTATCAGTCTCCTTCACA+TGG | + | chr7_3:44054397-44054416 | None:intergenic | 35.0% | |
| CTTCCAGTTAATGTGCTTTA+AGG | - | chr7_3:44054421-44054440 | Msa1105530:intron | 35.0% | |
| ! | CATTGTTATTGAGACATGCA+AGG | - | chr7_3:44054494-44054513 | Msa1105530:intron | 35.0% |
| TCATCTAATGGGACCAATAT+GGG | - | chr7_3:44054597-44054616 | Msa1105530:intron | 35.0% | |
| TCTATTATGACACACAAGTG+AGG | - | chr7_3:44054806-44054825 | Msa1105530:intron | 35.0% | |
| GCTGAGCAAAGGTTTAATAA+AGG | + | chr7_3:44054846-44054865 | None:intergenic | 35.0% | |
| AATTGAGGGAAAGACAAATG+AGG | + | chr7_3:44054914-44054933 | None:intergenic | 35.0% | |
| CGTCACTGCTTGTAAAATAT+TGG | - | chr7_3:44055008-44055027 | Msa1105530:CDS | 35.0% | |
| GTTTGTGTTACAGGTAATCT+TGG | - | chr7_3:44055051-44055070 | Msa1105530:CDS | 35.0% | |
| ! | GAAAGTGAGTTGAACATTGT+TGG | - | chr7_3:44055094-44055113 | Msa1105530:CDS | 35.0% |
| ! | AGTCCATGTGTTACTGATAT+TGG | - | chr7_3:44055241-44055260 | Msa1105530:exon | 35.0% |
| CAACCAATATCAGTAACACA+TGG | + | chr7_3:44055247-44055266 | None:intergenic | 35.0% | |
| ! | CATGTGTTACTGATATTGGT+TGG | - | chr7_3:44055245-44055264 | Msa1105530:exon | 35.0% |
| GTTAACATTGTACGTGGAAT+TGG | - | chr7_3:44055339-44055358 | Msa1105530:five_prime_UTR | 35.0% | |
| TTTAAGCTTCGAGGTTCTTC+TGG | + | chr7_3:44050609-44050628 | None:intergenic | 40.0% | |
| !!! | GTTTGAGGTTTTAAGCTTCG+AGG | + | chr7_3:44050618-44050637 | None:intergenic | 40.0% |
| TATCACTACCATCTTCGAGA+AGG | + | chr7_3:44050719-44050738 | None:intergenic | 40.0% | |
| AGAGATTCTTGAGCAAACGA+AGG | - | chr7_3:44050885-44050904 | Msa1105530:three_prime_UTR | 40.0% | |
| !!! | TGTAGCACTGACACTTTTGA+TGG | - | chr7_3:44051307-44051326 | Msa1105530:intron | 40.0% |
| ! | CTTTTGATGGAATGCATGTC+CGG | - | chr7_3:44051320-44051339 | Msa1105530:intron | 40.0% |
| CGATGTGTTAGTGTTGTGTT+TGG | - | chr7_3:44051431-44051450 | Msa1105530:intron | 40.0% | |
| TATGTTTAGGTAGCCCTAGT+TGG | - | chr7_3:44051647-44051666 | Msa1105530:three_prime_UTR | 40.0% | |
| !! | TTTCCGATAGTTCTAGTTGG+AGG | - | chr7_3:44051800-44051819 | Msa1105530:CDS | 40.0% |
| !! | TTCCGATAGTTCTAGTTGGA+GGG | - | chr7_3:44051801-44051820 | Msa1105530:CDS | 40.0% |
| !! | TGTTCATGGCTTAAGTTGGA+GGG | - | chr7_3:44051865-44051884 | Msa1105530:intron | 40.0% |
| ! | TCAAGTATAAGGTGTTTGGG+TGG | - | chr7_3:44051943-44051962 | Msa1105530:intron | 40.0% |
| ! | CAAGTATAAGGTGTTTGGGT+GGG | - | chr7_3:44051944-44051963 | Msa1105530:intron | 40.0% |
| CGATAATCTCTCTCCAATAG+TGG | - | chr7_3:44052054-44052073 | Msa1105530:intron | 40.0% | |
| ! | GTTTCAAAAAGCACACAGCA+CGG | + | chr7_3:44052366-44052385 | None:intergenic | 40.0% |
| !!! | TGCTGTGTGCTTTTTGAAAC+TGG | - | chr7_3:44052366-44052385 | Msa1105530:intron | 40.0% |
| ATTCCAGATTAAGCTGCTAC+AGG | - | chr7_3:44052514-44052533 | Msa1105530:intron | 40.0% | |
| TTCCAGATTAAGCTGCTACA+GGG | - | chr7_3:44052515-44052534 | Msa1105530:intron | 40.0% | |
| ! | GTTAAAGCTTTGGTGAGAAG+AGG | - | chr7_3:44052698-44052717 | Msa1105530:intron | 40.0% |
| !! | CATTTTGAAGAGGCAATTGC+TGG | - | chr7_3:44052743-44052762 | Msa1105530:intron | 40.0% |
| AGTGCAAACTTCAGATGAGT+TGG | + | chr7_3:44052806-44052825 | None:intergenic | 40.0% | |
| TACATGCGATACTTCAACCA+AGG | + | chr7_3:44052907-44052926 | None:intergenic | 40.0% | |
| ! | TTTACAACTTGCTTGGGGTT+GGG | + | chr7_3:44053015-44053034 | None:intergenic | 40.0% |
| ! | ATTTACAACTTGCTTGGGGT+TGG | + | chr7_3:44053016-44053035 | None:intergenic | 40.0% |
| TGGTGAAACGAAAAGATACG+GGG | + | chr7_3:44053208-44053227 | None:intergenic | 40.0% | |
| CTGGTGAAACGAAAAGATAC+GGG | + | chr7_3:44053209-44053228 | None:intergenic | 40.0% | |
| ATCCCTTAAATGGTCAAGCT+GGG | - | chr7_3:44053287-44053306 | Msa1105530:CDS | 40.0% | |
| TTCCCAGCTTGACCATTTAA+GGG | + | chr7_3:44053292-44053311 | None:intergenic | 40.0% | |
| TTTCCCAGCTTGACCATTTA+AGG | + | chr7_3:44053293-44053312 | None:intergenic | 40.0% | |
| TACTCAATTGGGGGGAAATT+AGG | + | chr7_3:44053517-44053536 | None:intergenic | 40.0% | |
| CAGGAATATACTCAATTGGG+GGG | + | chr7_3:44053525-44053544 | None:intergenic | 40.0% | |
| ! | CCAAGTCTTATACTACTAGG+TGG | + | chr7_3:44053767-44053786 | None:intergenic | 40.0% |
| CCACCTAGTAGTATAAGACT+TGG | - | chr7_3:44053764-44053783 | Msa1105530:intron | 40.0% | |
| GCCAACAAATTACATGTGCA+AGG | + | chr7_3:44053864-44053883 | None:intergenic | 40.0% | |
| !! | GCACATGTAATTTGTTGGCT+AGG | - | chr7_3:44053865-44053884 | Msa1105530:intron | 40.0% |
| AATTCTGTATTGGGACGCTT+TGG | - | chr7_3:44054130-44054149 | Msa1105530:intron | 40.0% | |
| ATTCTGTATTGGGACGCTTT+GGG | - | chr7_3:44054131-44054150 | Msa1105530:intron | 40.0% | |
| GCGTTCCATTGAGATAGAAT+AGG | + | chr7_3:44054203-44054222 | None:intergenic | 40.0% | |
| GACCACTCTATTAGTGAGAA+TGG | + | chr7_3:44054572-44054591 | None:intergenic | 40.0% | |
| CTCACTAATAGAGTGGTCTA+AGG | - | chr7_3:44054574-44054593 | Msa1105530:intron | 40.0% | |
| ! | AGTGGTCTAAGGTCATCTAA+TGG | - | chr7_3:44054585-44054604 | Msa1105530:intron | 40.0% |
| ! | GTGGTCTAAGGTCATCTAAT+GGG | - | chr7_3:44054586-44054605 | Msa1105530:intron | 40.0% |
| GTCATCTAATGGGACCAATA+TGG | - | chr7_3:44054596-44054615 | Msa1105530:intron | 40.0% | |
| ATGATGTTCCTTGTGGCTTA+AGG | - | chr7_3:44054652-44054671 | Msa1105530:intron | 40.0% | |
| ATTATGACACACAAGTGAGG+TGG | - | chr7_3:44054809-44054828 | Msa1105530:intron | 40.0% | |
| !!! | ACGACTTTTTAGCTGAGCAA+AGG | + | chr7_3:44054857-44054876 | None:intergenic | 40.0% |
| GGATCTAATTCACTGTCATG+TGG | - | chr7_3:44055029-44055048 | Msa1105530:CDS | 40.0% | |
| ! | TGTCATGTGGTTTGTGTTAC+AGG | - | chr7_3:44055042-44055061 | Msa1105530:CDS | 40.0% |
| GGTTAACATCAACACGTCTA+TGG | - | chr7_3:44055296-44055315 | Msa1105530:five_prime_UTR | 40.0% | |
| ACGTGAGTTAACATTGTACG+TGG | - | chr7_3:44055333-44055352 | Msa1105530:five_prime_UTR | 40.0% | |
| !! | TTCGGTGTCAGAGACTTGTT+TGG | + | chr7_3:44050696-44050715 | None:intergenic | 45.0% |
| CTACCATCTTCGAGAAGGTT+CGG | + | chr7_3:44050714-44050733 | None:intergenic | 45.0% | |
| !! | TCAGAGAAGTGTTTCGTCTG+AGG | - | chr7_3:44050939-44050958 | Msa1105530:intron | 45.0% |
| CTCCCTCCAACTAGAACTAT+CGG | + | chr7_3:44051806-44051825 | None:intergenic | 45.0% | |
| !! | CTGTTCATGGCTTAAGTTGG+AGG | - | chr7_3:44051864-44051883 | Msa1105530:intron | 45.0% |
| ACGTTCATTGCATTCTGAGC+TGG | - | chr7_3:44051888-44051907 | Msa1105530:intron | 45.0% | |
| ! | TGTAGATGGGAAGTATGAGG+AGG | - | chr7_3:44052258-44052277 | Msa1105530:intron | 45.0% |
| GAGCGTATTTCCACAGATGA+AGG | + | chr7_3:44052328-44052347 | None:intergenic | 45.0% | |
| TTATGCCTGACACTCTTCCT+TGG | - | chr7_3:44052887-44052906 | Msa1105530:intron | 45.0% | |
| !! | TTCAACCAAGGAAGAGTGTC+AGG | + | chr7_3:44052895-44052914 | None:intergenic | 45.0% |
| ! | TTACAACTTGCTTGGGGTTG+GGG | + | chr7_3:44053014-44053033 | None:intergenic | 45.0% |
| ! | TCTCAAACAAGAAGGGTGTG+TGG | - | chr7_3:44053059-44053078 | Msa1105530:intron | 45.0% |
| GATCCCTTAAATGGTCAAGC+TGG | - | chr7_3:44053286-44053305 | Msa1105530:CDS | 45.0% | |
| ! | TTCCCGTTTTACAGCAGCAA+GGG | + | chr7_3:44053335-44053354 | None:intergenic | 45.0% |
| ! | TTTCCCGTTTTACAGCAGCA+AGG | + | chr7_3:44053336-44053355 | None:intergenic | 45.0% |
| !! | GGACTGCTTTGAAGTTGTCA+AGG | + | chr7_3:44054162-44054181 | None:intergenic | 45.0% |
| AGGAACCAGTGTTTGGATCT+TGG | + | chr7_3:44054183-44054202 | None:intergenic | 45.0% | |
| CTCTATTAGTGAGAATGGCG+AGG | + | chr7_3:44054567-44054586 | None:intergenic | 45.0% | |
| CGCCATTCTCACTAATAGAG+TGG | - | chr7_3:44054567-44054586 | Msa1105530:intron | 45.0% | |
| TAAGAGAGCCTTAAGCCACA+AGG | + | chr7_3:44054663-44054682 | None:intergenic | 45.0% | |
| TACAAGCAGTGACGTGAAGT+AGG | + | chr7_3:44055002-44055021 | None:intergenic | 45.0% | |
| AACATTGTTGGAACGACGTC+AGG | - | chr7_3:44055106-44055125 | Msa1105530:CDS | 45.0% | |
| ACATTGTTGGAACGACGTCA+GGG | - | chr7_3:44055107-44055126 | Msa1105530:CDS | 45.0% | |
| ACACCGAACCTTCTCGAAGA+TGG | - | chr7_3:44050708-44050727 | Msa1105530:three_prime_UTR | 50.0% | |
| TGGAATCGCGTTTCGATCGT+CGG | + | chr7_3:44050755-44050774 | None:intergenic | 50.0% | |
| GAAGCTGATCTCGATAGCGA+CGG | - | chr7_3:44050829-44050848 | Msa1105530:three_prime_UTR | 50.0% | |
| TGAGCAAACGAAGGAGCAAG+AGG | - | chr7_3:44050894-44050913 | Msa1105530:three_prime_UTR | 50.0% | |
| GAGCAAACGAAGGAGCAAGA+GGG | - | chr7_3:44050895-44050914 | Msa1105530:three_prime_UTR | 50.0% | |
| ! | GTCGTGTCAGTGTTGAACAC+CGG | + | chr7_3:44051342-44051361 | None:intergenic | 50.0% |
| TAGTGACCTCGCTCCAACTA+GGG | + | chr7_3:44051663-44051682 | None:intergenic | 50.0% | |
| TTAGTGACCTCGCTCCAACT+AGG | + | chr7_3:44051664-44051683 | None:intergenic | 50.0% | |
| !! | CGATAGTTCTAGTTGGAGGG+AGG | - | chr7_3:44051804-44051823 | Msa1105530:CDS | 50.0% |
| ACCAGACATGCCTTCATCTG+TGG | - | chr7_3:44052315-44052334 | Msa1105530:intron | 50.0% | |
| ! | TCCACAGATGAAGGCATGTC+TGG | + | chr7_3:44052319-44052338 | None:intergenic | 50.0% |
| CACCCTGTAGCAGCTTAATC+TGG | + | chr7_3:44052520-44052539 | None:intergenic | 50.0% | |
| ! | AGCTTTGGTGAGAAGAGGAG+AGG | - | chr7_3:44052703-44052722 | Msa1105530:intron | 50.0% |
| AGATCTCGTAGCCACGCTAT+CGG | + | chr7_3:44052974-44052993 | None:intergenic | 50.0% | |
| GGTTGGGGTCTGTCTAAGTA+AGG | + | chr7_3:44052999-44053018 | None:intergenic | 50.0% | |
| AGCCCCTTGCTGCTGTAAAA+CGG | - | chr7_3:44053329-44053348 | Msa1105530:intron | 50.0% | |
| ! | TCCCGTTTTACAGCAGCAAG+GGG | + | chr7_3:44053334-44053353 | None:intergenic | 50.0% |
| GTCTTTGTAGGATGGTGCGT+TGG | - | chr7_3:44053438-44053457 | Msa1105530:intron | 50.0% | |
| ACTAGGTGGGGTTGACTACA+TGG | + | chr7_3:44053753-44053772 | None:intergenic | 50.0% | |
| GCAGTCCAAGATCCAAACAC+TGG | - | chr7_3:44054175-44054194 | Msa1105530:intron | 50.0% | |
| AACAAGCGCACCCTTCATGA+AGG | + | chr7_3:44054696-44054715 | None:intergenic | 50.0% | |
| AAGTAGGCTCACTCAGCACA+TGG | + | chr7_3:44054986-44055005 | None:intergenic | 50.0% | |
| ATCGAGATCAGCTTCGCTGG+CGG | + | chr7_3:44050824-44050843 | None:intergenic | 55.0% | |
| GCTATCGAGATCAGCTTCGC+TGG | + | chr7_3:44050827-44050846 | None:intergenic | 55.0% | |
| GAAGGAGCAAGAGGGAGAAC+AGG | - | chr7_3:44050903-44050922 | Msa1105530:intron | 55.0% | |
| TCCCTTCAAGACCGATAGCG+TGG | - | chr7_3:44052960-44052979 | Msa1105530:intron | 55.0% | |
| GCCACGCTATCGGTCTTGAA+GGG | + | chr7_3:44052964-44052983 | None:intergenic | 55.0% | |
| AGCCACGCTATCGGTCTTGA+AGG | + | chr7_3:44052965-44052984 | None:intergenic | 55.0% | |
| GCCCCTTGCTGCTGTAAAAC+GGG | - | chr7_3:44053330-44053349 | Msa1105530:intron | 55.0% | |
| GCTGGCGGTTTCGAAACCGT+CGG | + | chr7_3:44050809-44050828 | None:intergenic | 60.0% | |
| CTCGATAGCGACGGCGATGA+CGG | - | chr7_3:44050838-44050857 | Msa1105530:three_prime_UTR | 60.0% | |
| AGGTAGCCCTAGTTGGAGCG+AGG | - | chr7_3:44051654-44051673 | Msa1105530:three_prime_UTR | 60.0% | |
| ! | AAGGGGCTCTAGTCGGCGAA+TGG | + | chr7_3:44053317-44053336 | None:intergenic | 60.0% |
| ! | CAGCAGCAAGGGGCTCTAGT+CGG | + | chr7_3:44053324-44053343 | None:intergenic | 60.0% |
| !! | ACCGTCGGAAGCGTCGTTGC+CGG | + | chr7_3:44050794-44050813 | None:intergenic | 65.0% |
| ! | GATAGCGACGGCGATGACGG+TGG | - | chr7_3:44050841-44050860 | Msa1105530:three_prime_UTR | 65.0% |
| CCATCCAACGCCACTGCCGC+CGG | - | chr7_3:44050772-44050791 | Msa1105530:three_prime_UTR | 70.0% | |
| !! | GTCGGAAGCGTCGTTGCCGG+CGG | + | chr7_3:44050791-44050810 | None:intergenic | 70.0% |
| GCCGGCAACGACGCTTCCGA+CGG | - | chr7_3:44050790-44050809 | Msa1105530:three_prime_UTR | 70.0% | |
| ! | CCGGCGGCAGTGGCGTTGGA+TGG | + | chr7_3:44050775-44050794 | None:intergenic | 75.0% |
| GTTGCCGGCGGCAGTGGCGT+TGG | + | chr7_3:44050779-44050798 | None:intergenic | 75.0% | |
| AGCGTCGTTGCCGGCGGCAG+TGG | + | chr7_3:44050785-44050804 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 44050589 | 44055389 | 44050589 | ID=Msa1105530;Name=Msa1105530 |
| chr7_3 | mRNA | 44050589 | 44055389 | 44050589 | ID=Msa1105530-mRNA-1;Parent=Msa1105530;Name=Msa1105530-mRNA-1;_AED=0.05;_eAED=0.05;_QI=138|1|1|1|0.8|0.66|6|454|274 |
| chr7_3 | exon | 44050589 | 44050914 | 44050589 | ID=Msa1105530-mRNA-1:exon:9071;Parent=Msa1105530-mRNA-1 |
| chr7_3 | exon | 44051625 | 44051868 | 44051625 | ID=Msa1105530-mRNA-1:exon:9070;Parent=Msa1105530-mRNA-1 |
| chr7_3 | exon | 44052602 | 44052715 | 44052602 | ID=Msa1105530-mRNA-1:exon:9069;Parent=Msa1105530-mRNA-1 |
| chr7_3 | exon | 44053214 | 44053340 | 44053214 | ID=Msa1105530-mRNA-1:exon:9068;Parent=Msa1105530-mRNA-1 |
| chr7_3 | exon | 44053591 | 44053770 | 44053591 | ID=Msa1105530-mRNA-1:exon:9067;Parent=Msa1105530-mRNA-1 |
| chr7_3 | exon | 44054964 | 44055389 | 44054964 | ID=Msa1105530-mRNA-1:exon:9066;Parent=Msa1105530-mRNA-1 |
| chr7_3 | five_prime_UTR | 44055252 | 44055389 | 44055252 | ID=Msa1105530-mRNA-1:five_prime_utr;Parent=Msa1105530-mRNA-1 |
| chr7_3 | CDS | 44054964 | 44055251 | 44054964 | ID=Msa1105530-mRNA-1:cds;Parent=Msa1105530-mRNA-1 |
| chr7_3 | CDS | 44053591 | 44053770 | 44053591 | ID=Msa1105530-mRNA-1:cds;Parent=Msa1105530-mRNA-1 |
| chr7_3 | CDS | 44053214 | 44053340 | 44053214 | ID=Msa1105530-mRNA-1:cds;Parent=Msa1105530-mRNA-1 |
| chr7_3 | CDS | 44052602 | 44052715 | 44052602 | ID=Msa1105530-mRNA-1:cds;Parent=Msa1105530-mRNA-1 |
| chr7_3 | CDS | 44051753 | 44051868 | 44051753 | ID=Msa1105530-mRNA-1:cds;Parent=Msa1105530-mRNA-1 |
| chr7_3 | three_prime_UTR | 44051625 | 44051752 | 44051625 | ID=Msa1105530-mRNA-1:three_prime_utr;Parent=Msa1105530-mRNA-1 |
| chr7_3 | three_prime_UTR | 44050589 | 44050914 | 44050589 | ID=Msa1105530-mRNA-1:three_prime_utr;Parent=Msa1105530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
