AlfalfaGEDB | Msa1105710

M. sativa cultivar zhongmu-4 / Msa1105710

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00917.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105710	GAU11198.1	79.026	267	55	1	9	275	18	283	1.33e-153	440

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105710	sp\|Q9FPT1\|UBP12_ARATH	32.667	150	92	4	18	166	42	183	5.86e-16	81.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105710	A0A2K3N5Y4	81.081	259	47	2	8	265	1	258	8.30e-151	433

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1105710	Msa1105720	0.810510	1.112028e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105710	MtrunA17_Chr4g0069161	41.313	259	147	4	26	279	14	272	9.67e-60	192
Msa1105710	MtrunA17_Chr8g0334821	35.548	301	164	9	9	280	5	304	9.07e-52	176
Msa1105710	MtrunA17_Chr1g0166871	29.286	140	93	3	32	171	14	147	1.57e-19	86.7
Msa1105710	MtrunA17_Chr5g0439971	30.120	166	100	4	1	166	39	188	4.34e-19	87.4
Msa1105710	MtrunA17_Chr5g0443161	32.836	134	83	3	29	162	31	157	8.86e-19	83.6
Msa1105710	MtrunA17_Chr1g0170261	29.697	165	101	4	2	166	36	185	6.54e-18	84.0
Msa1105710	MtrunA17_Chr3g0119031	31.655	139	87	3	28	166	53	183	1.55e-17	82.8
Msa1105710	MtrunA17_Chr5g0443194	35.878	131	76	4	32	162	20	142	1.64e-14	73.2
Msa1105710	MtrunA17_Chr3g0137501	28.966	145	92	6	32	169	407	547	3.34e-11	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105710	AT3G17380.1	45.136	257	137	4	27	280	17	272	1.53e-71	223
Msa1105710	AT3G20370.1	36.882	263	150	9	18	271	73	328	6.12e-44	154
Msa1105710	AT3G20370.2	37.262	263	149	10	18	271	51	306	6.30e-44	153
Msa1105710	AT1G58270.1	34.127	252	152	5	25	269	90	334	2.66e-38	139
Msa1105710	AT3G22080.1	32.971	276	176	7	13	280	2	276	7.67e-38	136
Msa1105710	AT3G28220.1	36.000	250	151	8	25	269	76	321	7.82e-38	137
Msa1105710	AT5G26260.1	31.923	260	175	2	17	275	48	306	5.32e-36	132
Msa1105710	AT5G26280.1	32.806	253	168	2	25	276	55	306	1.65e-35	130
Msa1105710	AT5G26280.3	32.806	253	168	2	25	276	74	325	2.38e-35	130
Msa1105710	AT5G26290.1	33.597	253	160	3	25	276	48	293	5.75e-35	129

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Find 80 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATACATTTGATTATT+TGG	0.129920	7_3:+44504354	Msa1105710:three_prime_UTR
AAATTTAGACAAGTACGAGT+CGG	0.642137	7_3:+44503726	Msa1105710:CDS
AACATGCAGATGCATCTGTT+AGG	0.533883	7_3:+44503488	Msa1105710:intron
AACTTATAGGGAATCAGTGA+AGG	0.610016	7_3:+44502233	None:intergenic
AAGCTCCGTTTATACCCCAA+TGG	0.628057	7_3:+44503872	Msa1105710:CDS
AATAGGGACAGGATTTATTA+TGG	0.273304	7_3:-44503668	None:intergenic
AATCAATAGGTAATGAAATT+GGG	0.431396	7_3:-44503062	None:intergenic
AATGGAGTCGTTGAGGGAAA+GGG	0.546147	7_3:+44503890	Msa1105710:CDS
AATTTCATTACCTATTGATT+GGG	0.420880	7_3:+44503065	Msa1105710:CDS
AATTTCCAGCTATGGGAAAT+AGG	0.248028	7_3:-44503685	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAACAGTATTCATATCCA+TGG	-	chr7_3:44502377-44502396	None:intergenic	30.0%
TTTAGAAAACCATCTCTAGT+TGG	+	chr7_3:44502536-44502555	Msa1105710:intron	30.0%
TTCTTGCTGACCATTATTTA+AGG	-	chr7_3:44502839-44502858	None:intergenic	30.0%
TTGCCACGTTTCTATTTATT+TGG	+	chr7_3:44503029-44503048	Msa1105710:CDS	30.0%
TTGCCAAATAAATAGAAACG+TGG	-	chr7_3:44503035-44503054	None:intergenic	30.0%
ACATTTAAAGACCCTACAAA+AGG	+	chr7_3:44503565-44503584	Msa1105710:CDS	30.0%
AATAGGGACAGGATTTATTA+TGG	-	chr7_3:44503671-44503690	None:intergenic	30.0%
TTTGCAAAATTTCCAGCTAT+GGG	-	chr7_3:44503695-44503714	None:intergenic	30.0%
ATTTGCAAAATTTCCAGCTA+TGG	-	chr7_3:44503696-44503715	None:intergenic	30.0%
AAATTTAGACAAGTACGAGT+CGG	+	chr7_3:44503726-44503745	Msa1105710:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	44502240	44504374	44502240	ID=Msa1105710;Name=Msa1105710
chr7_3	mRNA	44502240	44504374	44502240	ID=Msa1105710-mRNA-1;Parent=Msa1105710;Name=Msa1105710-mRNA-1;_AED=0.21;_eAED=0.21;_QI=115\|1\|1\|1\|1\|1\|5\|278\|286
chr7_3	exon	44502240	44502424	44502240	ID=Msa1105710-mRNA-1:exon:9176;Parent=Msa1105710-mRNA-1
chr7_3	exon	44502702	44502816	44502702	ID=Msa1105710-mRNA-1:exon:9177;Parent=Msa1105710-mRNA-1
chr7_3	exon	44502984	44503153	44502984	ID=Msa1105710-mRNA-1:exon:9178;Parent=Msa1105710-mRNA-1
chr7_3	exon	44503497	44503776	44503497	ID=Msa1105710-mRNA-1:exon:9179;Parent=Msa1105710-mRNA-1
chr7_3	exon	44503871	44504374	44503871	ID=Msa1105710-mRNA-1:exon:9180;Parent=Msa1105710-mRNA-1
chr7_3	five_prime_UTR	44502240	44502354	44502240	ID=Msa1105710-mRNA-1:five_prime_utr;Parent=Msa1105710-mRNA-1
chr7_3	CDS	44502355	44502424	44502355	ID=Msa1105710-mRNA-1:cds;Parent=Msa1105710-mRNA-1
chr7_3	CDS	44502702	44502816	44502702	ID=Msa1105710-mRNA-1:cds;Parent=Msa1105710-mRNA-1
chr7_3	CDS	44502984	44503153	44502984	ID=Msa1105710-mRNA-1:cds;Parent=Msa1105710-mRNA-1
chr7_3	CDS	44503497	44503776	44503497	ID=Msa1105710-mRNA-1:cds;Parent=Msa1105710-mRNA-1
chr7_3	CDS	44503871	44504096	44503871	ID=Msa1105710-mRNA-1:cds;Parent=Msa1105710-mRNA-1
chr7_3	three_prime_UTR	44504097	44504374	44504097	ID=Msa1105710-mRNA-1:three_prime_utr;Parent=Msa1105710-mRNA-1

Gene Sequence

>Msa1105710

ATGGTTACTGTATGTTCTACCATGGATATGAATACTGTTTGTCCATTGTTGTCTACCACACCCATGAAAGGAAGGAAAGCTCCGCCAAGTCATTACACATTCAAAATACAGTCCTTCTCTTTGCTTTCTAAGGCCTCCATTGAAAAATGTGTCTCGGAAGAGTTTGAAGCTGGAGGTTACAAATGGAGCTTGTCTATATACCCATCTGGGAACACAGAGAGGAATGGACATTGCCACGTTTCTATTTATTTGGCAATCATGGACCCAATTTCATTACCTATTGATTGGGAGATCAATGCCATTATAAACTTTTCAGCATATAATTTTATTGACGATGAATACGTTACAACTCAAGATGCATCTGTTAGGCGTTTTCATGTCCTGAAAACAGAGTGGGGTATTCCAAATTTCATCAACATTGACACATTTAAAGACCCTACAAAAGGATATTTGTTGGATGATAATTGTGTTTTTGGAGCTGAGGTTTTCGTTGTGAAGAAGACTGCCAATAAAGGCGATTGCTTATCCATAATAAATCCTGTCCCTATTTCCCATAGCTGGAAATTTTGCAAATTTTCGTTTGCAAATTTAGACAAGTACGAGTCGGAATCCTTTGTAGCTGGAGACTATAAATGGAAGCTCCGTTTATACCCCAATGGAGTCGTTGAGGGAAAGGGTACCCATATTTCATTATTTTTAGCTCTGGATGTCTCAACTCTCCCATCTGACACTAAAATTCTCGTGGACTGCACTCTGCGCGCCAAAGACCAAATTTGTGGGAAACATGTTGAACGAAAGTGTAAGTCCATATATAGGCTATCTTCTGCGAAGCATGGATACGAACACAAACATCGGATATGA

Protein sequence

>Msa1105710

MVTVCSTMDMNTVCPLLSTTPMKGRKAPPSHYTFKIQSFSLLSKASIEKCVSEEFEAGGYKWSLSIYPSGNTERNGHCHVSIYLAIMDPISLPIDWEINAIINFSAYNFIDDEYVTTQDASVRRFHVLKTEWGIPNFINIDTFKDPTKGYLLDDNCVFGAEVFVVKKTANKGDCLSIINPVPISHSWKFCKFSFANLDKYESESFVAGDYKWKLRLYPNGVVEGKGTHISLFLALDVSTLPSDTKILVDCTLRAKDQICGKHVERKCKSIYRLSSAKHGYEHKHRI*