Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105720 | GAU11198.1 | 80.075 | 266 | 53 | 0 | 11 | 276 | 18 | 283 | 4.11e-156 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105720 | sp|Q9FPT1|UBP12_ARATH | 30.539 | 167 | 105 | 5 | 8 | 171 | 28 | 186 | 1.57e-16 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105720 | A0A2K3N5Y4 | 82.101 | 257 | 45 | 1 | 11 | 266 | 2 | 258 | 1.86e-152 | 438 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064120 | Msa1105720 | 0.803955 | 2.722797e-49 | -8.615850e-47 |
| Msa0622110 | Msa1105720 | 0.810152 | 1.328381e-50 | -8.615850e-47 |
| Msa0155180 | Msa1105720 | 0.804514 | 2.082814e-49 | -8.615850e-47 |
| Msa1105710 | Msa1105720 | 0.810510 | 1.112028e-50 | -8.615850e-47 |
| Msa1105720 | Msa1304950 | 0.811212 | 7.839681e-51 | -8.615850e-47 |
| Msa1105720 | Msa1360930 | 0.806331 | 8.665808e-50 | -8.615850e-47 |
| Msa1105720 | Msa1429860 | 0.804845 | 1.776712e-49 | -8.615850e-47 |
| Msa0526010 | Msa1105720 | 0.811581 | 6.516978e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105720 | MtrunA17_Chr4g0069161 | 40.927 | 259 | 147 | 3 | 28 | 280 | 14 | 272 | 1.19e-56 | 185 |
| Msa1105720 | MtrunA17_Chr8g0334821 | 34.539 | 304 | 170 | 8 | 7 | 281 | 1 | 304 | 3.21e-51 | 176 |
| Msa1105720 | MtrunA17_Chr1g0166871 | 29.078 | 141 | 94 | 3 | 32 | 172 | 12 | 146 | 6.70e-20 | 88.2 |
| Msa1105720 | MtrunA17_Chr5g0443161 | 32.836 | 134 | 83 | 3 | 31 | 164 | 31 | 157 | 1.69e-18 | 83.2 |
| Msa1105720 | MtrunA17_Chr5g0439971 | 31.206 | 141 | 89 | 3 | 31 | 171 | 59 | 191 | 2.06e-18 | 85.9 |
| Msa1105720 | MtrunA17_Chr3g0119031 | 30.986 | 142 | 90 | 3 | 30 | 171 | 53 | 186 | 2.64e-17 | 82.4 |
| Msa1105720 | MtrunA17_Chr1g0170261 | 30.935 | 139 | 87 | 3 | 30 | 168 | 56 | 185 | 9.32e-17 | 80.9 |
| Msa1105720 | MtrunA17_Chr5g0443194 | 35.115 | 131 | 77 | 4 | 34 | 164 | 20 | 142 | 1.75e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105720 | AT3G17380.1 | 45.914 | 257 | 134 | 4 | 29 | 281 | 17 | 272 | 2.81e-72 | 226 |
| Msa1105720 | AT3G20370.1 | 37.066 | 259 | 154 | 7 | 20 | 272 | 73 | 328 | 2.73e-44 | 155 |
| Msa1105720 | AT3G20370.2 | 37.452 | 259 | 153 | 8 | 20 | 272 | 51 | 306 | 3.52e-44 | 154 |
| Msa1105720 | AT1G58270.1 | 34.127 | 252 | 151 | 5 | 27 | 270 | 90 | 334 | 1.65e-37 | 137 |
| Msa1105720 | AT3G22080.1 | 31.884 | 276 | 180 | 6 | 14 | 281 | 1 | 276 | 2.89e-37 | 135 |
| Msa1105720 | AT3G28220.1 | 35.743 | 249 | 152 | 7 | 27 | 270 | 76 | 321 | 3.58e-37 | 136 |
| Msa1105720 | AT5G26280.1 | 32.941 | 255 | 164 | 4 | 27 | 277 | 55 | 306 | 1.70e-35 | 131 |
| Msa1105720 | AT5G26280.3 | 32.941 | 255 | 164 | 4 | 27 | 277 | 74 | 325 | 2.54e-35 | 131 |
| Msa1105720 | AT5G26260.1 | 31.679 | 262 | 172 | 4 | 19 | 276 | 48 | 306 | 5.80e-35 | 130 |
| Msa1105720 | AT2G15710.1 | 35.443 | 237 | 146 | 5 | 27 | 259 | 94 | 327 | 6.46e-35 | 130 |
| Msa1105720 | AT5G26290.1 | 33.597 | 253 | 159 | 4 | 27 | 277 | 48 | 293 | 5.60e-34 | 127 |
| Msa1105720 | AT3G20360.1 | 31.136 | 273 | 176 | 7 | 19 | 281 | 54 | 324 | 1.80e-33 | 126 |
| Msa1105720 | AT2G04170.5 | 34.413 | 247 | 155 | 4 | 27 | 269 | 125 | 368 | 2.34e-33 | 126 |
| Msa1105720 | AT5G26320.1 | 32.099 | 243 | 160 | 4 | 27 | 265 | 55 | 296 | 3.21e-33 | 125 |
| Msa1105720 | AT2G04170.4 | 34.156 | 243 | 153 | 4 | 27 | 265 | 3 | 242 | 1.60e-32 | 122 |
| Msa1105720 | AT2G04170.3 | 34.156 | 243 | 153 | 4 | 27 | 265 | 3 | 242 | 1.60e-32 | 122 |
| Msa1105720 | AT2G04170.6 | 34.156 | 243 | 153 | 4 | 27 | 265 | 85 | 324 | 6.42e-32 | 122 |
| Msa1105720 | AT2G04170.2 | 34.156 | 243 | 153 | 4 | 27 | 265 | 125 | 364 | 1.15e-31 | 122 |
| Msa1105720 | AT2G04170.1 | 34.156 | 243 | 153 | 4 | 27 | 265 | 125 | 364 | 1.15e-31 | 122 |
| Msa1105720 | AT4G09770.3 | 31.020 | 245 | 158 | 7 | 27 | 267 | 5 | 242 | 7.60e-31 | 116 |
| Msa1105720 | AT5G26300.1 | 31.621 | 253 | 169 | 4 | 27 | 277 | 55 | 305 | 1.33e-30 | 118 |
| Msa1105720 | AT4G09770.5 | 31.020 | 245 | 158 | 7 | 27 | 267 | 31 | 268 | 1.54e-30 | 116 |
| Msa1105720 | AT4G09770.2 | 30.800 | 250 | 162 | 7 | 27 | 272 | 5 | 247 | 1.82e-30 | 117 |
| Msa1105720 | AT4G09770.1 | 30.800 | 250 | 162 | 7 | 27 | 272 | 5 | 247 | 1.82e-30 | 117 |
| Msa1105720 | AT4G09770.4 | 30.800 | 250 | 162 | 7 | 27 | 272 | 31 | 273 | 3.75e-30 | 116 |
| Msa1105720 | AT3G20380.1 | 30.522 | 249 | 165 | 3 | 28 | 272 | 83 | 327 | 1.44e-29 | 116 |
| Msa1105720 | AT2G04190.1 | 31.873 | 251 | 163 | 5 | 27 | 272 | 115 | 362 | 1.01e-28 | 114 |
| Msa1105720 | AT4G00780.1 | 30.216 | 278 | 163 | 10 | 3 | 272 | 1 | 255 | 1.50e-28 | 112 |
| Msa1105720 | AT3G22085.1 | 27.875 | 287 | 171 | 9 | 18 | 292 | 5 | 267 | 2.64e-28 | 110 |
| Msa1105720 | AT1G65150.2 | 30.833 | 240 | 151 | 5 | 27 | 264 | 15 | 241 | 8.79e-27 | 107 |
| Msa1105720 | AT1G65150.1 | 30.833 | 240 | 151 | 5 | 27 | 264 | 15 | 241 | 8.79e-27 | 107 |
| Msa1105720 | AT2G04170.7 | 35.751 | 193 | 122 | 2 | 27 | 218 | 125 | 316 | 8.86e-27 | 107 |
| Msa1105720 | AT4G01390.1 | 31.667 | 240 | 146 | 7 | 34 | 266 | 22 | 250 | 8.89e-27 | 107 |
| Msa1105720 | AT4G09780.2 | 32.692 | 208 | 135 | 4 | 16 | 221 | 47 | 251 | 2.68e-26 | 107 |
| Msa1105720 | AT4G09780.1 | 32.692 | 208 | 135 | 4 | 16 | 221 | 47 | 251 | 4.09e-26 | 107 |
| Msa1105720 | AT5G26280.2 | 29.804 | 255 | 149 | 5 | 27 | 277 | 55 | 283 | 1.12e-24 | 102 |
| Msa1105720 | AT1G69660.1 | 32.447 | 188 | 124 | 3 | 99 | 283 | 8 | 195 | 1.34e-24 | 99.8 |
| Msa1105720 | AT1G69650.1 | 27.368 | 285 | 159 | 10 | 13 | 281 | 4 | 256 | 1.72e-20 | 89.7 |
| Msa1105720 | AT1G65050.2 | 33.594 | 128 | 77 | 2 | 27 | 154 | 15 | 134 | 6.52e-19 | 82.4 |
| Msa1105720 | AT1G65050.1 | 33.594 | 128 | 77 | 2 | 27 | 154 | 15 | 134 | 6.52e-19 | 82.4 |
| Msa1105720 | AT1G65370.1 | 30.319 | 188 | 110 | 5 | 84 | 263 | 1 | 175 | 1.92e-18 | 82.8 |
| Msa1105720 | AT3G46190.1 | 29.032 | 279 | 149 | 12 | 27 | 296 | 28 | 266 | 3.12e-18 | 83.6 |
| Msa1105720 | AT3G46190.2 | 29.032 | 279 | 149 | 12 | 27 | 296 | 48 | 286 | 7.13e-18 | 82.8 |
| Msa1105720 | AT5G06600.1 | 30.539 | 167 | 105 | 5 | 8 | 171 | 28 | 186 | 1.60e-17 | 83.6 |
| Msa1105720 | AT5G06600.3 | 30.539 | 167 | 105 | 5 | 8 | 171 | 28 | 186 | 1.65e-17 | 83.6 |
| Msa1105720 | AT5G06600.2 | 30.539 | 167 | 105 | 5 | 8 | 171 | 27 | 185 | 1.67e-17 | 83.6 |
| Msa1105720 | AT3G11910.3 | 30.769 | 143 | 90 | 4 | 30 | 171 | 51 | 185 | 3.00e-15 | 77.0 |
| Msa1105720 | AT3G11910.1 | 30.769 | 143 | 90 | 4 | 30 | 171 | 51 | 185 | 3.00e-15 | 77.0 |
| Msa1105720 | AT3G11910.4 | 30.769 | 143 | 90 | 4 | 30 | 171 | 50 | 184 | 3.09e-15 | 76.6 |
| Msa1105720 | AT3G11910.2 | 30.769 | 143 | 90 | 4 | 30 | 171 | 50 | 184 | 3.09e-15 | 76.6 |
| Msa1105720 | AT2G32870.1 | 27.203 | 261 | 160 | 9 | 24 | 269 | 117 | 362 | 5.70e-15 | 75.5 |
| Msa1105720 | AT2G32880.1 | 25.758 | 264 | 168 | 9 | 24 | 272 | 17 | 267 | 4.52e-14 | 72.0 |
| Msa1105720 | AT2G32870.2 | 27.612 | 268 | 163 | 10 | 24 | 276 | 117 | 368 | 9.08e-14 | 71.6 |
| Msa1105720 | AT2G32880.2 | 26.070 | 257 | 162 | 9 | 24 | 265 | 17 | 260 | 5.77e-13 | 68.6 |
Find 74 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCAATAGGTAATGAAAT+TGG | 0.139287 | 7_3:-44545368 | None:intergenic |
| TTGCCACGTTTCTATTTATT+TGG | 0.148271 | 7_3:+44545334 | Msa1105720:CDS |
| GTGTCAATGTTGATGAATTT+TGG | 0.174883 | 7_3:-44545850 | None:intergenic |
| GTCCTTCTCTTTGCTTTCTA+AGG | 0.213307 | 7_3:+44545047 | Msa1105720:CDS |
| TTTCCCACAGATTTGGTCTT+TGG | 0.245011 | 7_3:-44546298 | None:intergenic |
| GGATAAGCAATCGCCTTTAT+TGG | 0.263509 | 7_3:-44545950 | None:intergenic |
| AATAGTGACAGGATTTATTA+TGG | 0.278861 | 7_3:-44545971 | None:intergenic |
| CGACTCCATTGGGGTATAAA+AGG | 0.287642 | 7_3:-44546179 | None:intergenic |
| TTTATATGAATCACCTTTCA+TGG | 0.317900 | 7_3:-44544721 | None:intergenic |
| CAACATGTTTCCCACAGATT+TGG | 0.321462 | 7_3:-44546305 | None:intergenic |
| TTCTATTTATTTGGCAATCA+TGG | 0.321583 | 7_3:+44545343 | Msa1105720:CDS |
| CGCAGAAGATAACCTATATA+TGG | 0.324436 | 7_3:-44546343 | None:intergenic |
| CAATTTCATTACCTATTGAT+TGG | 0.338977 | 7_3:+44545369 | Msa1105720:CDS |
| ATATGCTGAAAAGTTTATAA+TGG | 0.340449 | 7_3:-44545402 | None:intergenic |
| GTTCATTAATTAGTTCTTCA+TGG | 0.346595 | 7_3:+44544635 | Msa1105720:exon |
| TTGTAGCTGGAGACTATAAA+TGG | 0.377264 | 7_3:+44546058 | Msa1105720:CDS |
| TTCATATCCTTGGTAGGAAA+TGG | 0.382333 | 7_3:-44544669 | None:intergenic |
| TTTCCCTCAACGACTCCATT+GGG | 0.382967 | 7_3:-44546189 | None:intergenic |
| AGCTTGTCTATATACCCATC+TGG | 0.388009 | 7_3:+44545290 | Msa1105720:CDS |
| ATTTGCAAAATTTCCAGCTA+TGG | 0.388409 | 7_3:-44545996 | None:intergenic |
| TCCTTGCGTTATGTGTGTTT+CGG | 0.413023 | 7_3:-44546510 | None:intergenic |
| CTTTCCCTCAACGACTCCAT+TGG | 0.417745 | 7_3:-44546190 | None:intergenic |
| AATTTCATTACCTATTGATT+GGG | 0.420880 | 7_3:+44545370 | Msa1105720:CDS |
| TTCCTCTCTGTGTTCCCAGA+TGG | 0.430780 | 7_3:-44545305 | None:intergenic |
| AATCAATAGGTAATGAAATT+GGG | 0.431396 | 7_3:-44545367 | None:intergenic |
| CTGTCACTATTTCCCATAGC+TGG | 0.438547 | 7_3:+44545983 | Msa1105720:CDS |
| TTTGCAAAATTTCCAGCTAT+GGG | 0.446728 | 7_3:-44545995 | None:intergenic |
| CCCTACAAAAGGATATTTGT+TGG | 0.450408 | 7_3:+44545882 | Msa1105720:CDS |
| TCCTCTCTGTGTTCCCAGAT+GGG | 0.451582 | 7_3:-44545304 | None:intergenic |
| GAAAGTGTAAGTCCATATAT+AGG | 0.452528 | 7_3:+44546331 | Msa1105720:CDS |
| CGTTATGTGTGTTTCGGTGT+CGG | 0.454609 | 7_3:-44546504 | None:intergenic |
| ACGCAAGGAGTGTTCATGAT+AGG | 0.465887 | 7_3:+44546524 | Msa1105720:three_prime_UTR |
| GCATTGATCTCCCAATCAAT+AGG | 0.467061 | 7_3:-44545380 | None:intergenic |
| TACCCCAATGGAGTCGTTGA+GGG | 0.484655 | 7_3:+44546186 | Msa1105720:CDS |
| CAATGGAGTCGTTGAGGGAA+AGG | 0.485272 | 7_3:+44546191 | Msa1105720:CDS |
| GTTGTGAAGACTGCCAATAA+AGG | 0.497899 | 7_3:+44545937 | Msa1105720:CDS |
| CAGCTATGGGAAATAGTGAC+AGG | 0.505924 | 7_3:-44545982 | None:intergenic |
| GAGTCGGAATCCTTTGTAGC+TGG | 0.507263 | 7_3:+44546045 | Msa1105720:CDS |
| TTGAAGCTGGAGGTTACAAA+TGG | 0.507558 | 7_3:+44545100 | Msa1105720:CDS |
| TCTCAAATCATTAGCGGTGG+CGG | 0.511717 | 7_3:-44546415 | None:intergenic |
| ACAAACACAATTCATATCCT+TGG | 0.519835 | 7_3:-44544679 | None:intergenic |
| GTCTCGGAAGAGTTTGAAGC+TGG | 0.523075 | 7_3:+44545087 | Msa1105720:CDS |
| AACATGCAGATGCATCTGTT+AGG | 0.533883 | 7_3:+44545794 | Msa1105720:intron |
| TGAATCACCTTTCATGGGTG+TGG | 0.537773 | 7_3:-44544715 | None:intergenic |
| TTATATGAATCACCTTTCAT+GGG | 0.539533 | 7_3:-44544720 | None:intergenic |
| ACGTTTAAAGACCCTACAAA+AGG | 0.539843 | 7_3:+44545871 | Msa1105720:CDS |
| AATGGAGTCGTTGAGGGAAA+GGG | 0.546147 | 7_3:+44546192 | Msa1105720:CDS |
| TTTATAGTCTCCAGCTACAA+AGG | 0.550212 | 7_3:-44546055 | None:intergenic |
| TATACGTGTCTTTGTCGTGT+CGG | 0.559809 | 7_3:+44546460 | Msa1105720:three_prime_UTR |
| TCATGTCCTGAAAACAGAGT+GGG | 0.562047 | 7_3:+44545822 | Msa1105720:CDS |
| TTGAATGTGTAATGACTTGG+CGG | 0.569734 | 7_3:-44545018 | None:intergenic |
| AGGTTATCTTCTGCGAAGCA+TGG | 0.572878 | 7_3:+44546351 | Msa1105720:CDS |
| CGCGCCAAAGACCAAATCTG+TGG | 0.574159 | 7_3:+44546294 | Msa1105720:CDS |
| GGCCTTAGAAAGCAAAGAGA+AGG | 0.575991 | 7_3:-44545049 | None:intergenic |
| ATCTGACACTAAAATTCTCG+TGG | 0.589622 | 7_3:+44546260 | Msa1105720:CDS |
| ACACAATTCATATCCTTGGT+AGG | 0.597401 | 7_3:-44544675 | None:intergenic |
| GTCTACTCCATTTCCTACCA+AGG | 0.597539 | 7_3:+44544662 | Msa1105720:CDS |
| ATACCCCAATGGAGTCGTTG+AGG | 0.601714 | 7_3:+44546185 | Msa1105720:CDS |
| GATGAATACGTTACAACTCA+AGG | 0.603967 | 7_3:+44545437 | Msa1105720:CDS |
| GCTTGTCTATATACCCATCT+GGG | 0.606052 | 7_3:+44545291 | Msa1105720:CDS |
| AACTTATAGGGAATCAGTGA+AGG | 0.610016 | 7_3:+44544538 | None:intergenic |
| TTCCCTCAACGACTCCATTG+GGG | 0.610483 | 7_3:-44546188 | None:intergenic |
| TTGTCTACCACACCCATGAA+AGG | 0.611440 | 7_3:+44544708 | Msa1105720:CDS |
| TCTGGGAACACAGAGAGGAA+TGG | 0.613084 | 7_3:+44545308 | Msa1105720:CDS |
| TCGGAAGAGTTTGAAGCTGG+AGG | 0.615592 | 7_3:+44545090 | Msa1105720:CDS |
| ACCGAAACACACATAACGCA+AGG | 0.627789 | 7_3:+44546509 | Msa1105720:three_prime_UTR |
| ATGGATATGAACACAGACAT+CGG | 0.629192 | 7_3:+44546370 | Msa1105720:CDS |
| TTCATGTCCTGAAAACAGAG+TGG | 0.637299 | 7_3:+44545821 | Msa1105720:CDS |
| AAATTTAGACAAGTACGAGT+CGG | 0.642137 | 7_3:+44546029 | Msa1105720:CDS |
| GCGCCAAAGACCAAATCTGT+GGG | 0.642900 | 7_3:+44546295 | Msa1105720:CDS |
| ACCCATCTGGGAACACAGAG+AGG | 0.643127 | 7_3:+44545303 | Msa1105720:CDS |
| CATGTCCTGAAAACAGAGTG+GGG | 0.661266 | 7_3:+44545823 | Msa1105720:CDS |
| ATGGGTGTGGTAGACAACAA+TGG | 0.666956 | 7_3:-44544702 | None:intergenic |
| TTGCCAAATAAATAGAAACG+TGG | 0.730686 | 7_3:-44545337 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAGTTATTTTTTCTTAA+GGG | + | chr7_3:44544613-44544632 | Msa1105720:five_prime_UTR | 10.0% |
| !!! | TATGTATGATATAAATTTTA+AGG | + | chr7_3:44545512-44545531 | Msa1105720:intron | 10.0% |
| !!! | TAATTTTTTAATATCTTTTC+TGG | + | chr7_3:44545713-44545732 | Msa1105720:intron | 10.0% |
| !!! | AATTAGTTATTTTTTCTTAA+GGG | + | chr7_3:44544613-44544632 | Msa1105720:five_prime_UTR | 10.0% |
| !!! | TATGTATGATATAAATTTTA+AGG | + | chr7_3:44545512-44545531 | Msa1105720:intron | 10.0% |
| !!! | TAATTTTTTAATATCTTTTC+TGG | + | chr7_3:44545713-44545732 | Msa1105720:intron | 10.0% |
| !! | AAAAAATAACTAATTGATGA+AGG | - | chr7_3:44544608-44544627 | None:intergenic | 15.0% |
| !!! | CAATTAGTTATTTTTTCTTA+AGG | + | chr7_3:44544612-44544631 | Msa1105720:five_prime_UTR | 15.0% |
| !!! | TTTATATTGATATCTTTTAC+AGG | + | chr7_3:44544985-44545004 | Msa1105720:intron | 15.0% |
| !!! | TATGATATAAATTTTAAGGT+TGG | + | chr7_3:44545516-44545535 | Msa1105720:intron | 15.0% |
| !!! | TTTACATTAGCTATTTTATA+GGG | + | chr7_3:44545669-44545688 | Msa1105720:intron | 15.0% |
| !! | AGCTAAAAATAATGAAATAT+GGG | - | chr7_3:44546220-44546239 | None:intergenic | 15.0% |
| !! | AAAAATTAAGAGATTATCAA+AGG | - | chr7_3:44546570-44546589 | None:intergenic | 15.0% |
| !! | AAAAAATAACTAATTGATGA+AGG | - | chr7_3:44544608-44544627 | None:intergenic | 15.0% |
| !!! | CAATTAGTTATTTTTTCTTA+AGG | + | chr7_3:44544612-44544631 | Msa1105720:five_prime_UTR | 15.0% |
| !!! | TTTATATTGATATCTTTTAC+AGG | + | chr7_3:44544985-44545004 | Msa1105720:intron | 15.0% |
| !!! | TATGATATAAATTTTAAGGT+TGG | + | chr7_3:44545516-44545535 | Msa1105720:intron | 15.0% |
| !!! | TTTACATTAGCTATTTTATA+GGG | + | chr7_3:44545669-44545688 | Msa1105720:intron | 15.0% |
| !! | AGCTAAAAATAATGAAATAT+GGG | - | chr7_3:44546220-44546239 | None:intergenic | 15.0% |
| !! | AAAAATTAAGAGATTATCAA+AGG | - | chr7_3:44546570-44546589 | None:intergenic | 15.0% |
| !!! | CTTTTTCGATTTAGTATTTA+GGG | - | chr7_3:44544875-44544894 | None:intergenic | 20.0% |
| !!! | ACTTTTTCGATTTAGTATTT+AGG | - | chr7_3:44544876-44544895 | None:intergenic | 20.0% |
| !! | AGATTAGATACATTAAAAGA+AGG | + | chr7_3:44544922-44544941 | Msa1105720:intron | 20.0% |
| !! | AATGGTATGTAAATGTATTT+AGG | + | chr7_3:44545118-44545137 | Msa1105720:intron | 20.0% |
| !! | AATCAATAGGTAATGAAATT+GGG | - | chr7_3:44545370-44545389 | None:intergenic | 20.0% |
| !!! | AATTTCATTACCTATTGATT+GGG | + | chr7_3:44545370-44545389 | Msa1105720:CDS | 20.0% |
| !! | ATATGCTGAAAAGTTTATAA+TGG | - | chr7_3:44545405-44545424 | None:intergenic | 20.0% |
| !! | ATGATATTTAATCACTAACT+TGG | - | chr7_3:44545630-44545649 | None:intergenic | 20.0% |
| !!! | CTTTACATTAGCTATTTTAT+AGG | + | chr7_3:44545668-44545687 | Msa1105720:intron | 20.0% |
| !! | TTATAATGTAGTATGAGATA+AGG | - | chr7_3:44545763-44545782 | None:intergenic | 20.0% |
| !!! | GTAACAAATTTTATATTCTC+TGG | + | chr7_3:44546134-44546153 | Msa1105720:intron | 20.0% |
| !! | GAGCTAAAAATAATGAAATA+TGG | - | chr7_3:44546221-44546240 | None:intergenic | 20.0% |
| !!! | TATTTCATTATTTTTAGCTC+TGG | + | chr7_3:44546221-44546240 | Msa1105720:CDS | 20.0% |
| !!! | CTTTTTCGATTTAGTATTTA+GGG | - | chr7_3:44544875-44544894 | None:intergenic | 20.0% |
| !!! | ACTTTTTCGATTTAGTATTT+AGG | - | chr7_3:44544876-44544895 | None:intergenic | 20.0% |
| !! | AGATTAGATACATTAAAAGA+AGG | + | chr7_3:44544922-44544941 | Msa1105720:intron | 20.0% |
| !! | AATGGTATGTAAATGTATTT+AGG | + | chr7_3:44545118-44545137 | Msa1105720:intron | 20.0% |
| !! | AATCAATAGGTAATGAAATT+GGG | - | chr7_3:44545370-44545389 | None:intergenic | 20.0% |
| !!! | AATTTCATTACCTATTGATT+GGG | + | chr7_3:44545370-44545389 | Msa1105720:CDS | 20.0% |
| !! | ATATGCTGAAAAGTTTATAA+TGG | - | chr7_3:44545405-44545424 | None:intergenic | 20.0% |
| !! | ATGATATTTAATCACTAACT+TGG | - | chr7_3:44545630-44545649 | None:intergenic | 20.0% |
| !!! | CTTTACATTAGCTATTTTAT+AGG | + | chr7_3:44545668-44545687 | Msa1105720:intron | 20.0% |
| !! | TTATAATGTAGTATGAGATA+AGG | - | chr7_3:44545763-44545782 | None:intergenic | 20.0% |
| !!! | GTAACAAATTTTATATTCTC+TGG | + | chr7_3:44546134-44546153 | Msa1105720:intron | 20.0% |
| !! | GAGCTAAAAATAATGAAATA+TGG | - | chr7_3:44546221-44546240 | None:intergenic | 20.0% |
| !!! | TATTTCATTATTTTTAGCTC+TGG | + | chr7_3:44546221-44546240 | Msa1105720:CDS | 20.0% |
| !! | AATTGATGAAGGTTTTTATC+TGG | - | chr7_3:44544597-44544616 | None:intergenic | 25.0% |
| !! | GTTCATTAATTAGTTCTTCA+TGG | + | chr7_3:44544635-44544654 | Msa1105720:exon | 25.0% |
| ! | TTATATGAATCACCTTTCAT+GGG | - | chr7_3:44544723-44544742 | None:intergenic | 25.0% |
| ! | TTTATATGAATCACCTTTCA+TGG | - | chr7_3:44544724-44544743 | None:intergenic | 25.0% |
| ! | TTAGATACATTAAAAGAAGG+TGG | + | chr7_3:44544925-44544944 | Msa1105720:intron | 25.0% |
| !! | TATTGATATCTTTTACAGGA+AGG | + | chr7_3:44544989-44545008 | Msa1105720:intron | 25.0% |
| !! | ATTTTGAATGTGTAATGACT+TGG | - | chr7_3:44545024-44545043 | None:intergenic | 25.0% |
| ! | TGTATTTAGGCCTTAAATAA+TGG | + | chr7_3:44545131-44545150 | Msa1105720:intron | 25.0% |
| ! | TTCTATTTATTTGGCAATCA+TGG | + | chr7_3:44545343-44545362 | Msa1105720:CDS | 25.0% |
| ! | CAATCAATAGGTAATGAAAT+TGG | - | chr7_3:44545371-44545390 | None:intergenic | 25.0% |
| ! | CAATTTCATTACCTATTGAT+TGG | + | chr7_3:44545369-44545388 | Msa1105720:CDS | 25.0% |
| !! | GTTATATTTTCTGTTAGGTT+TGG | + | chr7_3:44545538-44545557 | Msa1105720:intron | 25.0% |
| !! | TTGGATGATAATTGTGTTTT+TGG | + | chr7_3:44545901-44545920 | Msa1105720:CDS | 25.0% |
| ! | AATAGTGACAGGATTTATTA+TGG | - | chr7_3:44545974-44545993 | None:intergenic | 25.0% |
| !! | AGATTTTCTCAAATCATTAG+CGG | - | chr7_3:44546424-44546443 | None:intergenic | 25.0% |
| !! | AATTGATGAAGGTTTTTATC+TGG | - | chr7_3:44544597-44544616 | None:intergenic | 25.0% |
| !! | GTTCATTAATTAGTTCTTCA+TGG | + | chr7_3:44544635-44544654 | Msa1105720:exon | 25.0% |
| ! | TTATATGAATCACCTTTCAT+GGG | - | chr7_3:44544723-44544742 | None:intergenic | 25.0% |
| ! | TTTATATGAATCACCTTTCA+TGG | - | chr7_3:44544724-44544743 | None:intergenic | 25.0% |
| ! | TTAGATACATTAAAAGAAGG+TGG | + | chr7_3:44544925-44544944 | Msa1105720:intron | 25.0% |
| !! | TATTGATATCTTTTACAGGA+AGG | + | chr7_3:44544989-44545008 | Msa1105720:intron | 25.0% |
| !! | ATTTTGAATGTGTAATGACT+TGG | - | chr7_3:44545024-44545043 | None:intergenic | 25.0% |
| ! | TGTATTTAGGCCTTAAATAA+TGG | + | chr7_3:44545131-44545150 | Msa1105720:intron | 25.0% |
| ! | TTCTATTTATTTGGCAATCA+TGG | + | chr7_3:44545343-44545362 | Msa1105720:CDS | 25.0% |
| ! | CAATCAATAGGTAATGAAAT+TGG | - | chr7_3:44545371-44545390 | None:intergenic | 25.0% |
| ! | CAATTTCATTACCTATTGAT+TGG | + | chr7_3:44545369-44545388 | Msa1105720:CDS | 25.0% |
| !! | GTTATATTTTCTGTTAGGTT+TGG | + | chr7_3:44545538-44545557 | Msa1105720:intron | 25.0% |
| !! | TTGGATGATAATTGTGTTTT+TGG | + | chr7_3:44545901-44545920 | Msa1105720:CDS | 25.0% |
| ! | AATAGTGACAGGATTTATTA+TGG | - | chr7_3:44545974-44545993 | None:intergenic | 25.0% |
| !! | AGATTTTCTCAAATCATTAG+CGG | - | chr7_3:44546424-44546443 | None:intergenic | 25.0% |
| ! | AGGTTTTTATCTGGATTTTG+AGG | - | chr7_3:44544588-44544607 | None:intergenic | 30.0% |
| ACAAACACAATTCATATCCT+TGG | - | chr7_3:44544682-44544701 | None:intergenic | 30.0% | |
| TGATTCATATAAACACCAGT+TGG | + | chr7_3:44544731-44544750 | Msa1105720:intron | 30.0% | |
| TTCTTGCTGACCATTATTTA+AGG | - | chr7_3:44545144-44545163 | None:intergenic | 30.0% | |
| TTGCCACGTTTCTATTTATT+TGG | + | chr7_3:44545334-44545353 | Msa1105720:CDS | 30.0% | |
| TTGCCAAATAAATAGAAACG+TGG | - | chr7_3:44545340-44545359 | None:intergenic | 30.0% | |
| !! | GGTTGGTTATATTTTCTGTT+AGG | + | chr7_3:44545533-44545552 | Msa1105720:intron | 30.0% |
| !! | GTGTCAATGTTGATGAATTT+TGG | - | chr7_3:44545853-44545872 | None:intergenic | 30.0% |
| ! | CCAACAAATATCCTTTTGTA+GGG | - | chr7_3:44545885-44545904 | None:intergenic | 30.0% |
| ! | TCCAACAAATATCCTTTTGT+AGG | - | chr7_3:44545886-44545905 | None:intergenic | 30.0% |
| TTTGCAAAATTTCCAGCTAT+GGG | - | chr7_3:44545998-44546017 | None:intergenic | 30.0% | |
| ATTTGCAAAATTTCCAGCTA+TGG | - | chr7_3:44545999-44546018 | None:intergenic | 30.0% | |
| AAATTTAGACAAGTACGAGT+CGG | + | chr7_3:44546029-44546048 | Msa1105720:CDS | 30.0% | |
| !!! | CTCTGGCTATTTTTTTTAAC+AGG | + | chr7_3:44546151-44546170 | Msa1105720:intron | 30.0% |
| ! | GAAAGTGTAAGTCCATATAT+AGG | + | chr7_3:44546331-44546350 | Msa1105720:CDS | 30.0% |
| AAAAATATGTGTTAGTACCC+AGG | + | chr7_3:44546604-44546623 | Msa1105720:three_prime_UTR | 30.0% | |
| ! | AGGTTTTTATCTGGATTTTG+AGG | - | chr7_3:44544588-44544607 | None:intergenic | 30.0% |
| ACAAACACAATTCATATCCT+TGG | - | chr7_3:44544682-44544701 | None:intergenic | 30.0% | |
| TGATTCATATAAACACCAGT+TGG | + | chr7_3:44544731-44544750 | Msa1105720:intron | 30.0% | |
| TTCTTGCTGACCATTATTTA+AGG | - | chr7_3:44545144-44545163 | None:intergenic | 30.0% | |
| TTGCCACGTTTCTATTTATT+TGG | + | chr7_3:44545334-44545353 | Msa1105720:CDS | 30.0% | |
| TTGCCAAATAAATAGAAACG+TGG | - | chr7_3:44545340-44545359 | None:intergenic | 30.0% | |
| !! | GGTTGGTTATATTTTCTGTT+AGG | + | chr7_3:44545533-44545552 | Msa1105720:intron | 30.0% |
| !! | GTGTCAATGTTGATGAATTT+TGG | - | chr7_3:44545853-44545872 | None:intergenic | 30.0% |
| ! | CCAACAAATATCCTTTTGTA+GGG | - | chr7_3:44545885-44545904 | None:intergenic | 30.0% |
| ! | TCCAACAAATATCCTTTTGT+AGG | - | chr7_3:44545886-44545905 | None:intergenic | 30.0% |
| TTTGCAAAATTTCCAGCTAT+GGG | - | chr7_3:44545998-44546017 | None:intergenic | 30.0% | |
| ATTTGCAAAATTTCCAGCTA+TGG | - | chr7_3:44545999-44546018 | None:intergenic | 30.0% | |
| AAATTTAGACAAGTACGAGT+CGG | + | chr7_3:44546029-44546048 | Msa1105720:CDS | 30.0% | |
| !!! | CTCTGGCTATTTTTTTTAAC+AGG | + | chr7_3:44546151-44546170 | Msa1105720:intron | 30.0% |
| ! | GAAAGTGTAAGTCCATATAT+AGG | + | chr7_3:44546331-44546350 | Msa1105720:CDS | 30.0% |
| TTCATATCCTTGGTAGGAAA+TGG | - | chr7_3:44544672-44544691 | None:intergenic | 35.0% | |
| ACACAATTCATATCCTTGGT+AGG | - | chr7_3:44544678-44544697 | None:intergenic | 35.0% | |
| TTCAGAAAACCATCTCTAGT+TGG | + | chr7_3:44544841-44544860 | Msa1105720:intron | 35.0% | |
| ! | TTGAATGTGTAATGACTTGG+CGG | - | chr7_3:44545021-44545040 | None:intergenic | 35.0% |
| CTCCATTGAAAAATGTGTCT+CGG | + | chr7_3:44545071-44545090 | Msa1105720:CDS | 35.0% | |
| !! | TTCCGAGACACATTTTTCAA+TGG | - | chr7_3:44545076-44545095 | None:intergenic | 35.0% |
| TTAAACTTTCGTTCATGCGT+AGG | + | chr7_3:44545267-44545286 | Msa1105720:intron | 35.0% | |
| GATGAATACGTTACAACTCA+AGG | + | chr7_3:44545437-44545456 | Msa1105720:CDS | 35.0% | |
| ACGTTTAAAGACCCTACAAA+AGG | + | chr7_3:44545871-44545890 | Msa1105720:CDS | 35.0% | |
| CCCTACAAAAGGATATTTGT+TGG | + | chr7_3:44545882-44545901 | Msa1105720:CDS | 35.0% | |
| !!! | TAATTGTGTTTTTGGAGCTG+AGG | + | chr7_3:44545909-44545928 | Msa1105720:CDS | 35.0% |
| TTTATAGTCTCCAGCTACAA+AGG | - | chr7_3:44546058-44546077 | None:intergenic | 35.0% | |
| TTGTAGCTGGAGACTATAAA+TGG | + | chr7_3:44546058-44546077 | Msa1105720:CDS | 35.0% | |
| !! | CGAGAATTTTAGTGTCAGAT+GGG | - | chr7_3:44546260-44546279 | None:intergenic | 35.0% |
| !! | ACGAGAATTTTAGTGTCAGA+TGG | - | chr7_3:44546261-44546280 | None:intergenic | 35.0% |
| ATCTGACACTAAAATTCTCG+TGG | + | chr7_3:44546260-44546279 | Msa1105720:CDS | 35.0% | |
| CGCAGAAGATAACCTATATA+TGG | - | chr7_3:44546346-44546365 | None:intergenic | 35.0% | |
| ATGGATATGAACACAGACAT+CGG | + | chr7_3:44546370-44546389 | Msa1105720:CDS | 35.0% | |
| ! | TTTTCTCAAATCATTAGCGG+TGG | - | chr7_3:44546421-44546440 | None:intergenic | 35.0% |
| TTCATATCCTTGGTAGGAAA+TGG | - | chr7_3:44544672-44544691 | None:intergenic | 35.0% | |
| ACACAATTCATATCCTTGGT+AGG | - | chr7_3:44544678-44544697 | None:intergenic | 35.0% | |
| TTCAGAAAACCATCTCTAGT+TGG | + | chr7_3:44544841-44544860 | Msa1105720:intron | 35.0% | |
| ! | TTGAATGTGTAATGACTTGG+CGG | - | chr7_3:44545021-44545040 | None:intergenic | 35.0% |
| CTCCATTGAAAAATGTGTCT+CGG | + | chr7_3:44545071-44545090 | Msa1105720:CDS | 35.0% | |
| !! | TTCCGAGACACATTTTTCAA+TGG | - | chr7_3:44545076-44545095 | None:intergenic | 35.0% |
| TTAAACTTTCGTTCATGCGT+AGG | + | chr7_3:44545267-44545286 | Msa1105720:intron | 35.0% | |
| GATGAATACGTTACAACTCA+AGG | + | chr7_3:44545437-44545456 | Msa1105720:CDS | 35.0% | |
| ACGTTTAAAGACCCTACAAA+AGG | + | chr7_3:44545871-44545890 | Msa1105720:CDS | 35.0% | |
| CCCTACAAAAGGATATTTGT+TGG | + | chr7_3:44545882-44545901 | Msa1105720:CDS | 35.0% | |
| !!! | TAATTGTGTTTTTGGAGCTG+AGG | + | chr7_3:44545909-44545928 | Msa1105720:CDS | 35.0% |
| TTTATAGTCTCCAGCTACAA+AGG | - | chr7_3:44546058-44546077 | None:intergenic | 35.0% | |
| TTGTAGCTGGAGACTATAAA+TGG | + | chr7_3:44546058-44546077 | Msa1105720:CDS | 35.0% | |
| !! | CGAGAATTTTAGTGTCAGAT+GGG | - | chr7_3:44546260-44546279 | None:intergenic | 35.0% |
| !! | ACGAGAATTTTAGTGTCAGA+TGG | - | chr7_3:44546261-44546280 | None:intergenic | 35.0% |
| ATCTGACACTAAAATTCTCG+TGG | + | chr7_3:44546260-44546279 | Msa1105720:CDS | 35.0% | |
| CGCAGAAGATAACCTATATA+TGG | - | chr7_3:44546346-44546365 | None:intergenic | 35.0% | |
| ATGGATATGAACACAGACAT+CGG | + | chr7_3:44546370-44546389 | Msa1105720:CDS | 35.0% | |
| ! | TTTTCTCAAATCATTAGCGG+TGG | - | chr7_3:44546421-44546440 | None:intergenic | 35.0% |
| AACACACTTGTGTTACCAAC+TGG | - | chr7_3:44544749-44544768 | None:intergenic | 40.0% | |
| GTCCTTCTCTTTGCTTTCTA+AGG | + | chr7_3:44545047-44545066 | Msa1105720:CDS | 40.0% | |
| !! | CGAGACACATTTTTCAATGG+AGG | - | chr7_3:44545073-44545092 | None:intergenic | 40.0% |
| TTGAAGCTGGAGGTTACAAA+TGG | + | chr7_3:44545100-44545119 | Msa1105720:CDS | 40.0% | |
| AGCTTGTCTATATACCCATC+TGG | + | chr7_3:44545290-44545309 | Msa1105720:CDS | 40.0% | |
| GCTTGTCTATATACCCATCT+GGG | + | chr7_3:44545291-44545310 | Msa1105720:CDS | 40.0% | |
| ! | GCATTGATCTCCCAATCAAT+AGG | - | chr7_3:44545383-44545402 | None:intergenic | 40.0% |
| AACATGCAGATGCATCTGTT+AGG | + | chr7_3:44545794-44545813 | Msa1105720:intron | 40.0% | |
| TTCATGTCCTGAAAACAGAG+TGG | + | chr7_3:44545821-44545840 | Msa1105720:CDS | 40.0% | |
| TCATGTCCTGAAAACAGAGT+GGG | + | chr7_3:44545822-44545841 | Msa1105720:CDS | 40.0% | |
| GTTGTGAAGACTGCCAATAA+AGG | + | chr7_3:44545937-44545956 | Msa1105720:CDS | 40.0% | |
| GGATAAGCAATCGCCTTTAT+TGG | - | chr7_3:44545953-44545972 | None:intergenic | 40.0% | |
| !! | TCTTGTTACCAGCTTGTTGT+AGG | + | chr7_3:44546110-44546129 | Msa1105720:intron | 40.0% |
| TTGTTACTCCTACAACAAGC+TGG | - | chr7_3:44546121-44546140 | None:intergenic | 40.0% | |
| ! | AAGCTCCTTTTATACCCCAA+TGG | + | chr7_3:44546174-44546193 | Msa1105720:CDS | 40.0% |
| ! | TTTCCCACAGATTTGGTCTT+TGG | - | chr7_3:44546301-44546320 | None:intergenic | 40.0% |
| CAACATGTTTCCCACAGATT+TGG | - | chr7_3:44546308-44546327 | None:intergenic | 40.0% | |
| TATACGTGTCTTTGTCGTGT+CGG | + | chr7_3:44546460-44546479 | Msa1105720:three_prime_UTR | 40.0% | |
| TCCTTGCGTTATGTGTGTTT+CGG | - | chr7_3:44546513-44546532 | None:intergenic | 40.0% | |
| !! | ATAACCTTCACTGATTCCCT+GGG | - | chr7_3:44544545-44544564 | None:intergenic | 40.0% |
| !! | TATAACCTTCACTGATTCCC+TGG | - | chr7_3:44544546-44544565 | None:intergenic | 40.0% |
| AACACACTTGTGTTACCAAC+TGG | - | chr7_3:44544749-44544768 | None:intergenic | 40.0% | |
| GTCCTTCTCTTTGCTTTCTA+AGG | + | chr7_3:44545047-44545066 | Msa1105720:CDS | 40.0% | |
| !! | CGAGACACATTTTTCAATGG+AGG | - | chr7_3:44545073-44545092 | None:intergenic | 40.0% |
| TTGAAGCTGGAGGTTACAAA+TGG | + | chr7_3:44545100-44545119 | Msa1105720:CDS | 40.0% | |
| AGCTTGTCTATATACCCATC+TGG | + | chr7_3:44545290-44545309 | Msa1105720:CDS | 40.0% | |
| GCTTGTCTATATACCCATCT+GGG | + | chr7_3:44545291-44545310 | Msa1105720:CDS | 40.0% | |
| ! | GCATTGATCTCCCAATCAAT+AGG | - | chr7_3:44545383-44545402 | None:intergenic | 40.0% |
| AACATGCAGATGCATCTGTT+AGG | + | chr7_3:44545794-44545813 | Msa1105720:intron | 40.0% | |
| TTCATGTCCTGAAAACAGAG+TGG | + | chr7_3:44545821-44545840 | Msa1105720:CDS | 40.0% | |
| TCATGTCCTGAAAACAGAGT+GGG | + | chr7_3:44545822-44545841 | Msa1105720:CDS | 40.0% | |
| GTTGTGAAGACTGCCAATAA+AGG | + | chr7_3:44545937-44545956 | Msa1105720:CDS | 40.0% | |
| GGATAAGCAATCGCCTTTAT+TGG | - | chr7_3:44545953-44545972 | None:intergenic | 40.0% | |
| !! | TCTTGTTACCAGCTTGTTGT+AGG | + | chr7_3:44546110-44546129 | Msa1105720:intron | 40.0% |
| TTGTTACTCCTACAACAAGC+TGG | - | chr7_3:44546121-44546140 | None:intergenic | 40.0% | |
| ! | AAGCTCCTTTTATACCCCAA+TGG | + | chr7_3:44546174-44546193 | Msa1105720:CDS | 40.0% |
| ! | TTTCCCACAGATTTGGTCTT+TGG | - | chr7_3:44546301-44546320 | None:intergenic | 40.0% |
| CAACATGTTTCCCACAGATT+TGG | - | chr7_3:44546308-44546327 | None:intergenic | 40.0% | |
| TATACGTGTCTTTGTCGTGT+CGG | + | chr7_3:44546460-44546479 | Msa1105720:three_prime_UTR | 40.0% | |
| TCCTTGCGTTATGTGTGTTT+CGG | - | chr7_3:44546513-44546532 | None:intergenic | 40.0% | |
| GTCTACTCCATTTCCTACCA+AGG | + | chr7_3:44544662-44544681 | Msa1105720:CDS | 45.0% | |
| ATGGGTGTGGTAGACAACAA+TGG | - | chr7_3:44544705-44544724 | None:intergenic | 45.0% | |
| TTGTCTACCACACCCATGAA+AGG | + | chr7_3:44544708-44544727 | Msa1105720:CDS | 45.0% | |
| TGAATCACCTTTCATGGGTG+TGG | - | chr7_3:44544718-44544737 | None:intergenic | 45.0% | |
| GGCCTTAGAAAGCAAAGAGA+AGG | - | chr7_3:44545052-44545071 | None:intergenic | 45.0% | |
| CATGTCCTGAAAACAGAGTG+GGG | + | chr7_3:44545823-44545842 | Msa1105720:CDS | 45.0% | |
| ! | GAATACCCCACTCTGTTTTC+AGG | - | chr7_3:44545831-44545850 | None:intergenic | 45.0% |
| CAGCTATGGGAAATAGTGAC+AGG | - | chr7_3:44545985-44546004 | None:intergenic | 45.0% | |
| CTGTCACTATTTCCCATAGC+TGG | + | chr7_3:44545983-44546002 | Msa1105720:CDS | 45.0% | |
| CGACTCCATTGGGGTATAAA+AGG | - | chr7_3:44546182-44546201 | None:intergenic | 45.0% | |
| TTTCCCTCAACGACTCCATT+GGG | - | chr7_3:44546192-44546211 | None:intergenic | 45.0% | |
| AATGGAGTCGTTGAGGGAAA+GGG | + | chr7_3:44546192-44546211 | Msa1105720:CDS | 45.0% | |
| AGGTTATCTTCTGCGAAGCA+TGG | + | chr7_3:44546351-44546370 | Msa1105720:CDS | 45.0% | |
| TCTCAAATCATTAGCGGTGG+CGG | - | chr7_3:44546418-44546437 | None:intergenic | 45.0% | |
| ! | CGTTATGTGTGTTTCGGTGT+CGG | - | chr7_3:44546507-44546526 | None:intergenic | 45.0% |
| ACCGAAACACACATAACGCA+AGG | + | chr7_3:44546509-44546528 | Msa1105720:three_prime_UTR | 45.0% | |
| !! | ACGCAAGGAGTGTTCATGAT+AGG | + | chr7_3:44546524-44546543 | Msa1105720:three_prime_UTR | 45.0% |
| GTCTACTCCATTTCCTACCA+AGG | + | chr7_3:44544662-44544681 | Msa1105720:CDS | 45.0% | |
| ATGGGTGTGGTAGACAACAA+TGG | - | chr7_3:44544705-44544724 | None:intergenic | 45.0% | |
| TTGTCTACCACACCCATGAA+AGG | + | chr7_3:44544708-44544727 | Msa1105720:CDS | 45.0% | |
| TGAATCACCTTTCATGGGTG+TGG | - | chr7_3:44544718-44544737 | None:intergenic | 45.0% | |
| GGCCTTAGAAAGCAAAGAGA+AGG | - | chr7_3:44545052-44545071 | None:intergenic | 45.0% | |
| CATGTCCTGAAAACAGAGTG+GGG | + | chr7_3:44545823-44545842 | Msa1105720:CDS | 45.0% | |
| ! | GAATACCCCACTCTGTTTTC+AGG | - | chr7_3:44545831-44545850 | None:intergenic | 45.0% |
| CAGCTATGGGAAATAGTGAC+AGG | - | chr7_3:44545985-44546004 | None:intergenic | 45.0% | |
| CTGTCACTATTTCCCATAGC+TGG | + | chr7_3:44545983-44546002 | Msa1105720:CDS | 45.0% | |
| CGACTCCATTGGGGTATAAA+AGG | - | chr7_3:44546182-44546201 | None:intergenic | 45.0% | |
| TTTCCCTCAACGACTCCATT+GGG | - | chr7_3:44546192-44546211 | None:intergenic | 45.0% | |
| AATGGAGTCGTTGAGGGAAA+GGG | + | chr7_3:44546192-44546211 | Msa1105720:CDS | 45.0% | |
| AGGTTATCTTCTGCGAAGCA+TGG | + | chr7_3:44546351-44546370 | Msa1105720:CDS | 45.0% | |
| TCTCAAATCATTAGCGGTGG+CGG | - | chr7_3:44546418-44546437 | None:intergenic | 45.0% | |
| ! | CGTTATGTGTGTTTCGGTGT+CGG | - | chr7_3:44546507-44546526 | None:intergenic | 45.0% |
| ACCGAAACACACATAACGCA+AGG | + | chr7_3:44546509-44546528 | Msa1105720:three_prime_UTR | 45.0% | |
| !! | ACGCAAGGAGTGTTCATGAT+AGG | + | chr7_3:44546524-44546543 | Msa1105720:three_prime_UTR | 45.0% |
| GCAAGCACACCAACTAGAGA+TGG | - | chr7_3:44544853-44544872 | None:intergenic | 50.0% | |
| ! | GTCTCGGAAGAGTTTGAAGC+TGG | + | chr7_3:44545087-44545106 | Msa1105720:CDS | 50.0% |
| ! | TCGGAAGAGTTTGAAGCTGG+AGG | + | chr7_3:44545090-44545109 | Msa1105720:CDS | 50.0% |
| TCCTCTCTGTGTTCCCAGAT+GGG | - | chr7_3:44545307-44545326 | None:intergenic | 50.0% | |
| TTCCTCTCTGTGTTCCCAGA+TGG | - | chr7_3:44545308-44545327 | None:intergenic | 50.0% | |
| TCTGGGAACACAGAGAGGAA+TGG | + | chr7_3:44545308-44545327 | Msa1105720:CDS | 50.0% | |
| GAGTCGGAATCCTTTGTAGC+TGG | + | chr7_3:44546045-44546064 | Msa1105720:CDS | 50.0% | |
| ATACCCCAATGGAGTCGTTG+AGG | + | chr7_3:44546185-44546204 | Msa1105720:CDS | 50.0% | |
| TACCCCAATGGAGTCGTTGA+GGG | + | chr7_3:44546186-44546205 | Msa1105720:CDS | 50.0% | |
| TTCCCTCAACGACTCCATTG+GGG | - | chr7_3:44546191-44546210 | None:intergenic | 50.0% | |
| CTTTCCCTCAACGACTCCAT+TGG | - | chr7_3:44546193-44546212 | None:intergenic | 50.0% | |
| CAATGGAGTCGTTGAGGGAA+AGG | + | chr7_3:44546191-44546210 | Msa1105720:CDS | 50.0% | |
| GCGCCAAAGACCAAATCTGT+GGG | + | chr7_3:44546295-44546314 | Msa1105720:CDS | 50.0% | |
| GCAAGCACACCAACTAGAGA+TGG | - | chr7_3:44544853-44544872 | None:intergenic | 50.0% | |
| ! | GTCTCGGAAGAGTTTGAAGC+TGG | + | chr7_3:44545087-44545106 | Msa1105720:CDS | 50.0% |
| ! | TCGGAAGAGTTTGAAGCTGG+AGG | + | chr7_3:44545090-44545109 | Msa1105720:CDS | 50.0% |
| TCCTCTCTGTGTTCCCAGAT+GGG | - | chr7_3:44545307-44545326 | None:intergenic | 50.0% | |
| TTCCTCTCTGTGTTCCCAGA+TGG | - | chr7_3:44545308-44545327 | None:intergenic | 50.0% | |
| TCTGGGAACACAGAGAGGAA+TGG | + | chr7_3:44545308-44545327 | Msa1105720:CDS | 50.0% | |
| GAGTCGGAATCCTTTGTAGC+TGG | + | chr7_3:44546045-44546064 | Msa1105720:CDS | 50.0% | |
| ATACCCCAATGGAGTCGTTG+AGG | + | chr7_3:44546185-44546204 | Msa1105720:CDS | 50.0% | |
| TACCCCAATGGAGTCGTTGA+GGG | + | chr7_3:44546186-44546205 | Msa1105720:CDS | 50.0% | |
| TTCCCTCAACGACTCCATTG+GGG | - | chr7_3:44546191-44546210 | None:intergenic | 50.0% | |
| CTTTCCCTCAACGACTCCAT+TGG | - | chr7_3:44546193-44546212 | None:intergenic | 50.0% | |
| CAATGGAGTCGTTGAGGGAA+AGG | + | chr7_3:44546191-44546210 | Msa1105720:CDS | 50.0% | |
| GCGCCAAAGACCAAATCTGT+GGG | + | chr7_3:44546295-44546314 | Msa1105720:CDS | 50.0% | |
| ACCCATCTGGGAACACAGAG+AGG | + | chr7_3:44545303-44545322 | Msa1105720:CDS | 55.0% | |
| CGCGCCAAAGACCAAATCTG+TGG | + | chr7_3:44546294-44546313 | Msa1105720:CDS | 55.0% | |
| ACCCATCTGGGAACACAGAG+AGG | + | chr7_3:44545303-44545322 | Msa1105720:CDS | 55.0% | |
| CGCGCCAAAGACCAAATCTG+TGG | + | chr7_3:44546294-44546313 | Msa1105720:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 44544545 | 44546623 | 44544545 | ID=Msa1105720;Name=Msa1105720 |
| chr7_3 | mRNA | 44544545 | 44546623 | 44544545 | ID=Msa1105720-mRNA-1;Parent=Msa1105720;Name=Msa1105720-mRNA-1;_AED=0.22;_eAED=0.22;_QI=109|1|1|1|1|1|5|165|307 |
| chr7_3 | exon | 44544545 | 44544729 | 44544545 | ID=Msa1105720-mRNA-1:exon:9181;Parent=Msa1105720-mRNA-1 |
| chr7_3 | exon | 44545007 | 44545121 | 44545007 | ID=Msa1105720-mRNA-1:exon:9182;Parent=Msa1105720-mRNA-1 |
| chr7_3 | exon | 44545289 | 44545458 | 44545289 | ID=Msa1105720-mRNA-1:exon:9183;Parent=Msa1105720-mRNA-1 |
| chr7_3 | exon | 44545803 | 44546079 | 44545803 | ID=Msa1105720-mRNA-1:exon:9184;Parent=Msa1105720-mRNA-1 |
| chr7_3 | exon | 44546173 | 44546623 | 44546173 | ID=Msa1105720-mRNA-1:exon:9185;Parent=Msa1105720-mRNA-1 |
| chr7_3 | five_prime_UTR | 44544545 | 44544653 | 44544545 | ID=Msa1105720-mRNA-1:five_prime_utr;Parent=Msa1105720-mRNA-1 |
| chr7_3 | CDS | 44544654 | 44544729 | 44544654 | ID=Msa1105720-mRNA-1:cds;Parent=Msa1105720-mRNA-1 |
| chr7_3 | CDS | 44545007 | 44545121 | 44545007 | ID=Msa1105720-mRNA-1:cds;Parent=Msa1105720-mRNA-1 |
| chr7_3 | CDS | 44545289 | 44545458 | 44545289 | ID=Msa1105720-mRNA-1:cds;Parent=Msa1105720-mRNA-1 |
| chr7_3 | CDS | 44545803 | 44546079 | 44545803 | ID=Msa1105720-mRNA-1:cds;Parent=Msa1105720-mRNA-1 |
| chr7_3 | CDS | 44546173 | 44546458 | 44546173 | ID=Msa1105720-mRNA-1:cds;Parent=Msa1105720-mRNA-1 |
| chr7_3 | three_prime_UTR | 44546459 | 44546623 | 44546459 | ID=Msa1105720-mRNA-1:three_prime_utr;Parent=Msa1105720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
