Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105820 | XP_013448823.1 | 85.833 | 120 | 13 | 1 | 1 | 116 | 1 | 120 | 1.30e-64 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105820 | sp|P81529|MIFH_TRISP | 36.283 | 113 | 65 | 3 | 1 | 108 | 1 | 111 | 1.26e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105820 | A0A072UAN8 | 85.833 | 120 | 13 | 1 | 1 | 116 | 1 | 120 | 6.23e-65 | 201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0663090 | Msa1105820 | 0.803688 | 3.094382e-49 | -8.615850e-47 |
| Msa1105820 | Msa1105850 | 0.836039 | 1.182154e-56 | -8.615850e-47 |
| Msa1105820 | Msa1374440 | 0.812531 | 4.045299e-51 | -8.615850e-47 |
| Msa0484690 | Msa1105820 | 0.810416 | 1.165211e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105820 | MtrunA17_Chr7g0238011 | 85.833 | 120 | 13 | 1 | 1 | 116 | 1 | 120 | 1.20e-68 | 201 |
| Msa1105820 | MtrunA17_Chr4g0005161 | 56.250 | 112 | 45 | 1 | 1 | 108 | 1 | 112 | 6.18e-37 | 121 |
| Msa1105820 | MtrunA17_Chr4g0071771 | 50.575 | 87 | 43 | 0 | 1 | 87 | 1 | 87 | 7.67e-24 | 88.2 |
| Msa1105820 | MtrunA17_Chr4g0005151 | 44.828 | 87 | 48 | 0 | 1 | 87 | 1 | 87 | 3.90e-23 | 86.7 |
| Msa1105820 | MtrunA17_Chr4g0071761 | 49.425 | 87 | 44 | 0 | 1 | 87 | 1 | 87 | 1.53e-22 | 85.1 |
| Msa1105820 | MtrunA17_Chr7g0243451 | 41.379 | 87 | 51 | 0 | 1 | 87 | 1 | 87 | 4.67e-21 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105820 | AT5G01650.1 | 51.304 | 115 | 52 | 1 | 1 | 111 | 1 | 115 | 1.12e-34 | 116 |
| Msa1105820 | AT5G01650.4 | 58.889 | 90 | 37 | 0 | 1 | 90 | 1 | 90 | 6.41e-34 | 114 |
| Msa1105820 | AT5G01650.2 | 58.889 | 90 | 37 | 0 | 1 | 90 | 1 | 90 | 1.08e-33 | 114 |
| Msa1105820 | AT5G01650.3 | 58.889 | 90 | 37 | 0 | 1 | 90 | 1 | 90 | 1.08e-33 | 114 |
| Msa1105820 | AT3G51660.1 | 41.111 | 90 | 53 | 0 | 1 | 90 | 1 | 90 | 9.54e-21 | 80.9 |
| Msa1105820 | AT5G57170.2 | 42.708 | 96 | 55 | 0 | 1 | 96 | 1 | 96 | 2.37e-20 | 79.7 |
| Msa1105820 | AT5G57170.1 | 42.708 | 96 | 55 | 0 | 1 | 96 | 1 | 96 | 2.63e-20 | 79.7 |
Find 29 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTGTTCATACAGATTT+GGG | 0.230111 | 7_3:-44848489 | None:intergenic |
| AGAGTTGAGTTGAGAGAGTA+TGG | 0.230816 | 7_3:-44848442 | None:intergenic |
| TCATTTGTTTGTTAATTTGC+TGG | 0.244833 | 7_3:+44849447 | Msa1105820:CDS |
| CTTAGTGTCTTGTTCAAATC+TGG | 0.252518 | 7_3:-44849291 | None:intergenic |
| TCAACAAACGTTAGCTTTGA+TGG | 0.285904 | 7_3:+44848405 | Msa1105820:CDS |
| GAAAAGTGTTCATACAGATT+TGG | 0.288874 | 7_3:-44848490 | None:intergenic |
| TTCTCGGAATCGGAATCATT+TGG | 0.369065 | 7_3:-44849512 | None:intergenic |
| CTCTACAATTGCCAACATCT+TGG | 0.371283 | 7_3:+44848461 | Msa1105820:CDS |
| GGATCAATACCAATATGTTT+TGG | 0.376407 | 7_3:+44849213 | Msa1105820:CDS |
| CATTTGTTTGTTAATTTGCT+GGG | 0.378874 | 7_3:+44849448 | Msa1105820:CDS |
| TCAGTTTCACCAAAACATAT+TGG | 0.384156 | 7_3:-44849222 | None:intergenic |
| TATGGTGAATTTGTGGCTAT+TGG | 0.409602 | 7_3:+44849258 | Msa1105820:CDS |
| GGTTATAACTGTGGACTGAA+TGG | 0.410655 | 7_3:+44849469 | Msa1105820:CDS |
| GTTATAACTGTGGACTGAAT+GGG | 0.420050 | 7_3:+44849470 | Msa1105820:CDS |
| TCTACAATTGCCAACATCTT+GGG | 0.431715 | 7_3:+44848462 | Msa1105820:CDS |
| AAAGCTAACGTTTGTTGAAA+GGG | 0.447172 | 7_3:-44848400 | None:intergenic |
| ACTGAGGAGCCAGCAGCATA+TGG | 0.461454 | 7_3:+44849240 | Msa1105820:CDS |
| CAAAGCTAACGTTTGTTGAA+AGG | 0.463062 | 7_3:-44848401 | None:intergenic |
| TATGTGACGGTTTCATTAGA+AGG | 0.476466 | 7_3:+44849192 | Msa1105820:CDS |
| AGCAGCATATGGTGAATTTG+TGG | 0.510208 | 7_3:+44849251 | Msa1105820:CDS |
| ACAAATTCACCATATGCTGC+TGG | 0.542569 | 7_3:-44849249 | None:intergenic |
| TTATAACTGTGGACTGAATG+GGG | 0.555818 | 7_3:+44849471 | Msa1105820:CDS |
| CAACATGGTGTGAAGAACTA+AGG | 0.562588 | 7_3:-44849325 | None:intergenic |
| TTTGGGGTAACCCAAGATGT+TGG | 0.568005 | 7_3:-44848472 | None:intergenic |
| TATTGATTTGTAGTATGTGA+CGG | 0.610554 | 7_3:+44849179 | Msa1105820:intron |
| AATTTGCTGGGTTATAACTG+TGG | 0.626984 | 7_3:+44849460 | Msa1105820:CDS |
| TTTGTTGAAAGGGTGAGACA+AGG | 0.631716 | 7_3:-44848390 | None:intergenic |
| TATAACTGTGGACTGAATGG+GGG | 0.635569 | 7_3:+44849472 | Msa1105820:CDS |
| AAAGTGTTCATACAGATTTG+GGG | 0.721663 | 7_3:-44848488 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTATTGATTAGTTTTA+TGG | + | chr7_3:44848550-44848569 | Msa1105820:intron | 10.0% |
| !!! | TAAATTATTGATTAGTTTTA+TGG | + | chr7_3:44848550-44848569 | Msa1105820:intron | 10.0% |
| !! | TTTGTCTATAAAAGTAAAAT+TGG | - | chr7_3:44848642-44848661 | None:intergenic | 15.0% |
| !! | GGTAAATTAACTAAATTTAA+AGG | + | chr7_3:44848680-44848699 | Msa1105820:intron | 15.0% |
| !! | CAATTCAATATTGTAAATTT+GGG | - | chr7_3:44849399-44849418 | None:intergenic | 15.0% |
| !! | ACAATTCAATATTGTAAATT+TGG | - | chr7_3:44849400-44849419 | None:intergenic | 15.0% |
| !! | TTTGTCTATAAAAGTAAAAT+TGG | - | chr7_3:44848642-44848661 | None:intergenic | 15.0% |
| !! | GGTAAATTAACTAAATTTAA+AGG | + | chr7_3:44848680-44848699 | Msa1105820:intron | 15.0% |
| !! | CAATTCAATATTGTAAATTT+GGG | - | chr7_3:44849399-44849418 | None:intergenic | 15.0% |
| !! | ACAATTCAATATTGTAAATT+TGG | - | chr7_3:44849400-44849419 | None:intergenic | 15.0% |
| !! | TAGTTATCGAATATTTAATC+CGG | + | chr7_3:44848937-44848956 | Msa1105820:intron | 20.0% |
| !!! | GTTTAAAATGAGATAAAAAC+CGG | - | chr7_3:44848959-44848978 | None:intergenic | 20.0% |
| !! | TAGTTATCGAATATTTAATC+CGG | + | chr7_3:44848937-44848956 | Msa1105820:intron | 20.0% |
| !!! | GTTTAAAATGAGATAAAAAC+CGG | - | chr7_3:44848959-44848978 | None:intergenic | 20.0% |
| !!! | AAAAGTGTTCATACAGATTT+GGG | - | chr7_3:44848492-44848511 | None:intergenic | 25.0% |
| !!! | TTAGTTTTATGGTCATGTTA+TGG | + | chr7_3:44848561-44848580 | Msa1105820:intron | 25.0% |
| ! | ATTTAGTTAATTTACCTCTC+TGG | - | chr7_3:44848676-44848695 | None:intergenic | 25.0% |
| !! | AAATTTAAAGGCGAATCTTT+TGG | + | chr7_3:44848692-44848711 | Msa1105820:intron | 25.0% |
| ! | AAGAACTATGGTTCAAATTT+CGG | - | chr7_3:44848869-44848888 | None:intergenic | 25.0% |
| ! | CAAATGAGTTAAAAGAACTA+TGG | - | chr7_3:44848881-44848900 | None:intergenic | 25.0% |
| !!! | TATTGATTTGTAGTATGTGA+CGG | + | chr7_3:44849179-44849198 | Msa1105820:intron | 25.0% |
| ! | CTTAAAATTCTATGACATTG+AGG | + | chr7_3:44849371-44849390 | Msa1105820:intron | 25.0% |
| !!! | TCATTTGTTTGTTAATTTGC+TGG | + | chr7_3:44849447-44849466 | Msa1105820:CDS | 25.0% |
| !!! | CATTTGTTTGTTAATTTGCT+GGG | + | chr7_3:44849448-44849467 | Msa1105820:CDS | 25.0% |
| !!! | AAAAGTGTTCATACAGATTT+GGG | - | chr7_3:44848492-44848511 | None:intergenic | 25.0% |
| !!! | TTAGTTTTATGGTCATGTTA+TGG | + | chr7_3:44848561-44848580 | Msa1105820:intron | 25.0% |
| ! | ATTTAGTTAATTTACCTCTC+TGG | - | chr7_3:44848676-44848695 | None:intergenic | 25.0% |
| !! | AAATTTAAAGGCGAATCTTT+TGG | + | chr7_3:44848692-44848711 | Msa1105820:intron | 25.0% |
| ! | AAGAACTATGGTTCAAATTT+CGG | - | chr7_3:44848869-44848888 | None:intergenic | 25.0% |
| ! | CAAATGAGTTAAAAGAACTA+TGG | - | chr7_3:44848881-44848900 | None:intergenic | 25.0% |
| !!! | TATTGATTTGTAGTATGTGA+CGG | + | chr7_3:44849179-44849198 | Msa1105820:intron | 25.0% |
| ! | CTTAAAATTCTATGACATTG+AGG | + | chr7_3:44849371-44849390 | Msa1105820:intron | 25.0% |
| !!! | TCATTTGTTTGTTAATTTGC+TGG | + | chr7_3:44849447-44849466 | Msa1105820:CDS | 25.0% |
| !!! | CATTTGTTTGTTAATTTGCT+GGG | + | chr7_3:44849448-44849467 | Msa1105820:CDS | 25.0% |
| ! | AAAGCTAACGTTTGTTGAAA+GGG | - | chr7_3:44848403-44848422 | None:intergenic | 30.0% |
| ! | AAAGTGTTCATACAGATTTG+GGG | - | chr7_3:44848491-44848510 | None:intergenic | 30.0% |
| !! | GAAAAGTGTTCATACAGATT+TGG | - | chr7_3:44848493-44848512 | None:intergenic | 30.0% |
| AAATATAGTAGTAACCAGAG+AGG | + | chr7_3:44848659-44848678 | Msa1105820:intron | 30.0% | |
| ! | TCTCATTTTAAACTAATCCC+TGG | + | chr7_3:44848966-44848985 | Msa1105820:intron | 30.0% |
| ! | GGATCAATACCAATATGTTT+TGG | + | chr7_3:44849213-44849232 | Msa1105820:CDS | 30.0% |
| TCAGTTTCACCAAAACATAT+TGG | - | chr7_3:44849225-44849244 | None:intergenic | 30.0% | |
| !!! | AATATGTTTTGGTGAAACTG+AGG | + | chr7_3:44849224-44849243 | Msa1105820:CDS | 30.0% |
| TTTAAGTAGAAACGTGACTT+AGG | - | chr7_3:44849357-44849376 | None:intergenic | 30.0% | |
| ! | AAAGCTAACGTTTGTTGAAA+GGG | - | chr7_3:44848403-44848422 | None:intergenic | 30.0% |
| ! | AAAGTGTTCATACAGATTTG+GGG | - | chr7_3:44848491-44848510 | None:intergenic | 30.0% |
| !! | GAAAAGTGTTCATACAGATT+TGG | - | chr7_3:44848493-44848512 | None:intergenic | 30.0% |
| AAATATAGTAGTAACCAGAG+AGG | + | chr7_3:44848659-44848678 | Msa1105820:intron | 30.0% | |
| ! | TCTCATTTTAAACTAATCCC+TGG | + | chr7_3:44848966-44848985 | Msa1105820:intron | 30.0% |
| ! | GGATCAATACCAATATGTTT+TGG | + | chr7_3:44849213-44849232 | Msa1105820:CDS | 30.0% |
| TCAGTTTCACCAAAACATAT+TGG | - | chr7_3:44849225-44849244 | None:intergenic | 30.0% | |
| !!! | AATATGTTTTGGTGAAACTG+AGG | + | chr7_3:44849224-44849243 | Msa1105820:CDS | 30.0% |
| TTTAAGTAGAAACGTGACTT+AGG | - | chr7_3:44849357-44849376 | None:intergenic | 30.0% | |
| ! | CAAAGCTAACGTTTGTTGAA+AGG | - | chr7_3:44848404-44848423 | None:intergenic | 35.0% |
| !! | TCAACAAACGTTAGCTTTGA+TGG | + | chr7_3:44848405-44848424 | Msa1105820:CDS | 35.0% |
| TCTACAATTGCCAACATCTT+GGG | + | chr7_3:44848462-44848481 | Msa1105820:CDS | 35.0% | |
| TTATGGTCATGTTATGGTCT+TGG | + | chr7_3:44848567-44848586 | Msa1105820:intron | 35.0% | |
| TATGGTCATGTTATGGTCTT+GGG | + | chr7_3:44848568-44848587 | Msa1105820:intron | 35.0% | |
| TAGAATTCAAGTGGGAAGTT+AGG | - | chr7_3:44848770-44848789 | None:intergenic | 35.0% | |
| TGGTAAGCTAGAATTCAAGT+GGG | - | chr7_3:44848778-44848797 | None:intergenic | 35.0% | |
| ATGGTAAGCTAGAATTCAAG+TGG | - | chr7_3:44848779-44848798 | None:intergenic | 35.0% | |
| TTCTTCAAGGAAGGGAATTA+TGG | - | chr7_3:44848798-44848817 | None:intergenic | 35.0% | |
| AATTCCCTTCCTTGAAGAAT+TGG | + | chr7_3:44848799-44848818 | Msa1105820:intron | 35.0% | |
| TATGGTTCAAATTTCGGTGA+AGG | - | chr7_3:44848863-44848882 | None:intergenic | 35.0% | |
| ! | ATTTTAAACTAATCCCTGGC+AGG | + | chr7_3:44848970-44848989 | Msa1105820:intron | 35.0% |
| TATGTGACGGTTTCATTAGA+AGG | + | chr7_3:44849192-44849211 | Msa1105820:CDS | 35.0% | |
| TATGGTGAATTTGTGGCTAT+TGG | + | chr7_3:44849258-44849277 | Msa1105820:CDS | 35.0% | |
| ! | CTTAGTGTCTTGTTCAAATC+TGG | - | chr7_3:44849294-44849313 | None:intergenic | 35.0% |
| !! | AATTTGCTGGGTTATAACTG+TGG | + | chr7_3:44849460-44849479 | Msa1105820:CDS | 35.0% |
| ! | GTTATAACTGTGGACTGAAT+GGG | + | chr7_3:44849470-44849489 | Msa1105820:CDS | 35.0% |
| ! | TTATAACTGTGGACTGAATG+GGG | + | chr7_3:44849471-44849490 | Msa1105820:CDS | 35.0% |
| ! | CAAAGCTAACGTTTGTTGAA+AGG | - | chr7_3:44848404-44848423 | None:intergenic | 35.0% |
| !! | TCAACAAACGTTAGCTTTGA+TGG | + | chr7_3:44848405-44848424 | Msa1105820:CDS | 35.0% |
| TCTACAATTGCCAACATCTT+GGG | + | chr7_3:44848462-44848481 | Msa1105820:CDS | 35.0% | |
| TTATGGTCATGTTATGGTCT+TGG | + | chr7_3:44848567-44848586 | Msa1105820:intron | 35.0% | |
| TATGGTCATGTTATGGTCTT+GGG | + | chr7_3:44848568-44848587 | Msa1105820:intron | 35.0% | |
| TAGAATTCAAGTGGGAAGTT+AGG | - | chr7_3:44848770-44848789 | None:intergenic | 35.0% | |
| TGGTAAGCTAGAATTCAAGT+GGG | - | chr7_3:44848778-44848797 | None:intergenic | 35.0% | |
| ATGGTAAGCTAGAATTCAAG+TGG | - | chr7_3:44848779-44848798 | None:intergenic | 35.0% | |
| TTCTTCAAGGAAGGGAATTA+TGG | - | chr7_3:44848798-44848817 | None:intergenic | 35.0% | |
| AATTCCCTTCCTTGAAGAAT+TGG | + | chr7_3:44848799-44848818 | Msa1105820:intron | 35.0% | |
| TATGGTTCAAATTTCGGTGA+AGG | - | chr7_3:44848863-44848882 | None:intergenic | 35.0% | |
| ! | ATTTTAAACTAATCCCTGGC+AGG | + | chr7_3:44848970-44848989 | Msa1105820:intron | 35.0% |
| TATGTGACGGTTTCATTAGA+AGG | + | chr7_3:44849192-44849211 | Msa1105820:CDS | 35.0% | |
| TATGGTGAATTTGTGGCTAT+TGG | + | chr7_3:44849258-44849277 | Msa1105820:CDS | 35.0% | |
| ! | CTTAGTGTCTTGTTCAAATC+TGG | - | chr7_3:44849294-44849313 | None:intergenic | 35.0% |
| !! | AATTTGCTGGGTTATAACTG+TGG | + | chr7_3:44849460-44849479 | Msa1105820:CDS | 35.0% |
| ! | GTTATAACTGTGGACTGAAT+GGG | + | chr7_3:44849470-44849489 | Msa1105820:CDS | 35.0% |
| ! | TTATAACTGTGGACTGAATG+GGG | + | chr7_3:44849471-44849490 | Msa1105820:CDS | 35.0% |
| TTTGTTGAAAGGGTGAGACA+AGG | - | chr7_3:44848393-44848412 | None:intergenic | 40.0% | |
| !! | AGAGTTGAGTTGAGAGAGTA+TGG | - | chr7_3:44848445-44848464 | None:intergenic | 40.0% |
| CTCTACAATTGCCAACATCT+TGG | + | chr7_3:44848461-44848480 | Msa1105820:CDS | 40.0% | |
| AGAGAAGCTTAAGAGAGAGA+AGG | - | chr7_3:44848515-44848534 | None:intergenic | 40.0% | |
| ! | ATGGTCATGTTATGGTCTTG+GGG | + | chr7_3:44848569-44848588 | Msa1105820:intron | 40.0% |
| ! | GTTATGGTCTTGGGGAAATA+TGG | + | chr7_3:44848577-44848596 | Msa1105820:intron | 40.0% |
| GTTAGGCCTCTTAATCTGTT+GGG | - | chr7_3:44849001-44849020 | None:intergenic | 40.0% | |
| AGGCCTAACGCAAAATACAA+GGG | + | chr7_3:44849012-44849031 | Msa1105820:intron | 40.0% | |
| ACAAATTCACCATATGCTGC+TGG | - | chr7_3:44849252-44849271 | None:intergenic | 40.0% | |
| AGCAGCATATGGTGAATTTG+TGG | + | chr7_3:44849251-44849270 | Msa1105820:CDS | 40.0% | |
| CAACATGGTGTGAAGAACTA+AGG | - | chr7_3:44849328-44849347 | None:intergenic | 40.0% | |
| ! | GGTTATAACTGTGGACTGAA+TGG | + | chr7_3:44849469-44849488 | Msa1105820:CDS | 40.0% |
| ! | TATAACTGTGGACTGAATGG+GGG | + | chr7_3:44849472-44849491 | Msa1105820:CDS | 40.0% |
| TTTGTTGAAAGGGTGAGACA+AGG | - | chr7_3:44848393-44848412 | None:intergenic | 40.0% | |
| !! | AGAGTTGAGTTGAGAGAGTA+TGG | - | chr7_3:44848445-44848464 | None:intergenic | 40.0% |
| CTCTACAATTGCCAACATCT+TGG | + | chr7_3:44848461-44848480 | Msa1105820:CDS | 40.0% | |
| AGAGAAGCTTAAGAGAGAGA+AGG | - | chr7_3:44848515-44848534 | None:intergenic | 40.0% | |
| ! | ATGGTCATGTTATGGTCTTG+GGG | + | chr7_3:44848569-44848588 | Msa1105820:intron | 40.0% |
| ! | GTTATGGTCTTGGGGAAATA+TGG | + | chr7_3:44848577-44848596 | Msa1105820:intron | 40.0% |
| GTTAGGCCTCTTAATCTGTT+GGG | - | chr7_3:44849001-44849020 | None:intergenic | 40.0% | |
| AGGCCTAACGCAAAATACAA+GGG | + | chr7_3:44849012-44849031 | Msa1105820:intron | 40.0% | |
| ACAAATTCACCATATGCTGC+TGG | - | chr7_3:44849252-44849271 | None:intergenic | 40.0% | |
| AGCAGCATATGGTGAATTTG+TGG | + | chr7_3:44849251-44849270 | Msa1105820:CDS | 40.0% | |
| CAACATGGTGTGAAGAACTA+AGG | - | chr7_3:44849328-44849347 | None:intergenic | 40.0% | |
| ! | GGTTATAACTGTGGACTGAA+TGG | + | chr7_3:44849469-44849488 | Msa1105820:CDS | 40.0% |
| ! | TATAACTGTGGACTGAATGG+GGG | + | chr7_3:44849472-44849491 | Msa1105820:CDS | 40.0% |
| ! | TTTGGGGTAACCCAAGATGT+TGG | - | chr7_3:44848475-44848494 | None:intergenic | 45.0% |
| TCCCTTCCTTGAAGAATTGG+CGG | + | chr7_3:44848802-44848821 | Msa1105820:intron | 45.0% | |
| CTTAACCCGCCAATTCTTCA+AGG | - | chr7_3:44848811-44848830 | None:intergenic | 45.0% | |
| CGTTAGGCCTCTTAATCTGT+TGG | - | chr7_3:44849002-44849021 | None:intergenic | 45.0% | |
| GAGGCCTAACGCAAAATACA+AGG | + | chr7_3:44849011-44849030 | Msa1105820:intron | 45.0% | |
| ! | GCTCCCTTGTATTTTGCGTT+AGG | - | chr7_3:44849018-44849037 | None:intergenic | 45.0% |
| !! | TGACTTAGGCACTGACAACA+TGG | - | chr7_3:44849343-44849362 | None:intergenic | 45.0% |
| ! | TTTGGGGTAACCCAAGATGT+TGG | - | chr7_3:44848475-44848494 | None:intergenic | 45.0% |
| TCCCTTCCTTGAAGAATTGG+CGG | + | chr7_3:44848802-44848821 | Msa1105820:intron | 45.0% | |
| CTTAACCCGCCAATTCTTCA+AGG | - | chr7_3:44848811-44848830 | None:intergenic | 45.0% | |
| CGTTAGGCCTCTTAATCTGT+TGG | - | chr7_3:44849002-44849021 | None:intergenic | 45.0% | |
| GAGGCCTAACGCAAAATACA+AGG | + | chr7_3:44849011-44849030 | Msa1105820:intron | 45.0% | |
| ! | GCTCCCTTGTATTTTGCGTT+AGG | - | chr7_3:44849018-44849037 | None:intergenic | 45.0% |
| !! | TGACTTAGGCACTGACAACA+TGG | - | chr7_3:44849343-44849362 | None:intergenic | 45.0% |
| CCCGCCAATTCTTCAAGGAA+GGG | - | chr7_3:44848806-44848825 | None:intergenic | 50.0% | |
| CCCTTCCTTGAAGAATTGGC+GGG | + | chr7_3:44848803-44848822 | Msa1105820:intron | 50.0% | |
| ACCCGCCAATTCTTCAAGGA+AGG | - | chr7_3:44848807-44848826 | None:intergenic | 50.0% | |
| AAACTAATCCCTGGCAGGAC+CGG | + | chr7_3:44848975-44848994 | Msa1105820:intron | 50.0% | |
| CCCGCCAATTCTTCAAGGAA+GGG | - | chr7_3:44848806-44848825 | None:intergenic | 50.0% | |
| CCCTTCCTTGAAGAATTGGC+GGG | + | chr7_3:44848803-44848822 | Msa1105820:intron | 50.0% | |
| ACCCGCCAATTCTTCAAGGA+AGG | - | chr7_3:44848807-44848826 | None:intergenic | 50.0% | |
| AAACTAATCCCTGGCAGGAC+CGG | + | chr7_3:44848975-44848994 | Msa1105820:intron | 50.0% | |
| GACCGGCCCAACAGATTAAG+AGG | + | chr7_3:44848992-44849011 | Msa1105820:intron | 55.0% | |
| GGCCTCTTAATCTGTTGGGC+CGG | - | chr7_3:44848997-44849016 | None:intergenic | 55.0% | |
| ACTGAGGAGCCAGCAGCATA+TGG | + | chr7_3:44849240-44849259 | Msa1105820:CDS | 55.0% | |
| TGGACTGAATGGGGGTCTCA+TGG | + | chr7_3:44849480-44849499 | Msa1105820:CDS | 55.0% | |
| ACTGAATGGGGGTCTCATGG+TGG | + | chr7_3:44849483-44849502 | Msa1105820:CDS | 55.0% | |
| GACCGGCCCAACAGATTAAG+AGG | + | chr7_3:44848992-44849011 | Msa1105820:intron | 55.0% | |
| GGCCTCTTAATCTGTTGGGC+CGG | - | chr7_3:44848997-44849016 | None:intergenic | 55.0% | |
| ACTGAGGAGCCAGCAGCATA+TGG | + | chr7_3:44849240-44849259 | Msa1105820:CDS | 55.0% | |
| TGGACTGAATGGGGGTCTCA+TGG | + | chr7_3:44849480-44849499 | Msa1105820:CDS | 55.0% | |
| ACTGAATGGGGGTCTCATGG+TGG | + | chr7_3:44849483-44849502 | Msa1105820:CDS | 55.0% | |
| CTGTTGGGCCGGTCCTGCCA+GGG | - | chr7_3:44848986-44849005 | None:intergenic | 70.0% | |
| TCTGTTGGGCCGGTCCTGCC+AGG | - | chr7_3:44848987-44849006 | None:intergenic | 70.0% | |
| CTGTTGGGCCGGTCCTGCCA+GGG | - | chr7_3:44848986-44849005 | None:intergenic | 70.0% | |
| TCTGTTGGGCCGGTCCTGCC+AGG | - | chr7_3:44848987-44849006 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 44848387 | 44849519 | 44848387 | ID=Msa1105820;Name=Msa1105820 |
| chr7_3 | mRNA | 44848387 | 44849519 | 44848387 | ID=Msa1105820-mRNA-1;Parent=Msa1105820;Name=Msa1105820-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|3|0|116 |
| chr7_3 | exon | 44848387 | 44848497 | 44848387 | ID=Msa1105820-mRNA-1:exon:9216;Parent=Msa1105820-mRNA-1 |
| chr7_3 | exon | 44849192 | 44849346 | 44849192 | ID=Msa1105820-mRNA-1:exon:9217;Parent=Msa1105820-mRNA-1 |
| chr7_3 | exon | 44849435 | 44849519 | 44849435 | ID=Msa1105820-mRNA-1:exon:9218;Parent=Msa1105820-mRNA-1 |
| chr7_3 | CDS | 44848387 | 44848497 | 44848387 | ID=Msa1105820-mRNA-1:cds;Parent=Msa1105820-mRNA-1 |
| chr7_3 | CDS | 44849192 | 44849346 | 44849192 | ID=Msa1105820-mRNA-1:cds;Parent=Msa1105820-mRNA-1 |
| chr7_3 | CDS | 44849435 | 44849519 | 44849435 | ID=Msa1105820-mRNA-1:cds;Parent=Msa1105820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
