AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1105850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105850 MtrunA17_Chr7g0238011 96.667 120 4 0 1 120 1 120 3.72e-82 236
Msa1105850 MtrunA17_Chr4g0005161 64.286 112 40 0 1 112 1 112 4.07e-49 152
Msa1105850 MtrunA17_Chr4g0071771 51.786 112 54 0 1 112 1 112 3.31e-34 114
Msa1105850 MtrunA17_Chr4g0071761 49.107 112 57 0 1 112 1 112 3.37e-32 109
Msa1105850 MtrunA17_Chr4g0005151 45.098 102 56 0 1 102 1 102 2.78e-30 104
Msa1105850 MtrunA17_Chr7g0243451 40.566 106 63 0 1 106 1 106 5.00e-29 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105850 AT5G01650.1 60.870 115 45 0 1 115 1 115 1.61e-47 149
Msa1105850 AT5G01650.4 62.617 107 40 0 1 107 1 107 9.96e-46 144
Msa1105850 AT5G01650.2 61.682 107 41 0 1 107 1 107 3.99e-45 142
Msa1105850 AT5G01650.3 61.682 107 41 0 1 107 1 107 3.99e-45 142
Msa1105850 AT5G57170.1 48.214 112 58 0 1 112 1 112 3.70e-30 104
Msa1105850 AT5G57170.2 50.000 102 51 0 1 102 1 102 7.49e-30 103
Msa1105850 AT3G51660.1 40.777 103 61 0 1 103 1 103 7.31e-25 91.3

Find 62 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACTTCATACATATATTT+AGG 0.180060 7_3:-44890786 None:intergenic
CTCTAGGATAAAATTAAATT+TGG 0.192617 7_3:-44889139 None:intergenic
AGAGTTGAGTTGAGAGAGTA+TGG 0.230816 7_3:-44889325 None:intergenic
ATCCTAGAGAACTATATTAA+AGG 0.237847 7_3:+44889153 Msa1105850:five_prime_UTR
AAAAGTGTTCATACAGATTT+GGG 0.239169 7_3:-44889372 None:intergenic
CTTAGTTTGTTGTTCAAATC+TGG 0.254690 7_3:-44890178 None:intergenic
AGTTCTCAAATCACACTTTC+AGG 0.278519 7_3:-44890816 None:intergenic
TCAACAAACGTTAGCTTTGA+TGG 0.285904 7_3:+44889288 Msa1105850:CDS
TTGTTTGAAAATTGCACTTT+AGG 0.289411 7_3:+44890870 Msa1105850:three_prime_UTR
GAAAAGTGTTCATACAGATT+TGG 0.297932 7_3:-44889373 None:intergenic
AATTAAAAGAAATGCATATT+AGG 0.336657 7_3:+44890841 Msa1105850:three_prime_UTR
CTTTACTTTCTCATGAGTTC+AGG 0.339663 7_3:+44890485 Msa1105850:three_prime_UTR
ACAAGTTTCTCGGAATCATT+TGG 0.359454 7_3:-44890435 None:intergenic
GTTATAATTGTGGACTGAAT+GGG 0.367727 7_3:+44890393 Msa1105850:CDS
CTCTACAATTGCCAACATCT+TGG 0.371283 7_3:+44889344 Msa1105850:CDS
GGATCAATACCAATATGTTT+TGG 0.376407 7_3:+44890100 Msa1105850:CDS
TCAGTTTCACCAAAACATAT+TGG 0.384156 7_3:-44890109 None:intergenic
GGTTATAATTGTGGACTGAA+TGG 0.389437 7_3:+44890392 Msa1105850:CDS
TATGGTGAATTTGTGGCTAT+TGG 0.409602 7_3:+44890145 Msa1105850:CDS
CAATCTATCCACAAGTTTCT+CGG 0.410916 7_3:-44890445 None:intergenic
TCTACAATTGCCAACATCTT+GGG 0.431715 7_3:+44889345 Msa1105850:CDS
TATGTGACGGTTTCATTAGA+AGG 0.443254 7_3:+44890079 Msa1105850:CDS
AGTTCTTCACACCATGTTGT+CGG 0.443341 7_3:+44890216 Msa1105850:CDS
AAAGCTAACGTTTGTTGAAA+GGG 0.447172 7_3:-44889283 None:intergenic
ACTGAGGAGCCAGCAGCATA+TGG 0.461454 7_3:+44890127 Msa1105850:CDS
CAAAGCTAACGTTTGTTGAA+AGG 0.463062 7_3:-44889284 None:intergenic
GACCTTTAATATAGTTCTCT+AGG 0.465623 7_3:-44889155 None:intergenic
GTCTTGTGTTCAAACCTCAT+AGG 0.472732 7_3:-44890623 None:intergenic
AATTTGTAGGGTTATAATTG+TGG 0.473862 7_3:+44890383 Msa1105850:intron
CTTAAAATTCTATGACATTG+AGG 0.475447 7_3:+44890258 Msa1105850:CDS
ATTATGTTTAAGCTTATGCT+AGG 0.479050 7_3:+44890539 Msa1105850:three_prime_UTR
TCATTGTACACCAAGGAAAC+CGG 0.485814 7_3:-44890598 None:intergenic
CCATGGAAGATTTACAAGTC+GGG 0.486226 7_3:-44890513 None:intergenic
CCAAGGAAACCGGAAAGAAA+AGG 0.489163 7_3:-44890588 None:intergenic
AATGATTTGTTTAGTGATGA+GGG 0.494865 7_3:-44890665 None:intergenic
AGCAGCATATGGTGAATTTG+TGG 0.510208 7_3:+44890138 Msa1105850:CDS
CAATGATTTGTTTAGTGATG+AGG 0.511758 7_3:-44890666 None:intergenic
TTATGTTTAAGCTTATGCTA+GGG 0.534518 7_3:+44890540 Msa1105850:three_prime_UTR
ACAAATTCACCATATGCTGC+TGG 0.542569 7_3:-44890136 None:intergenic
TTATAATTGTGGACTGAATG+GGG 0.546367 7_3:+44890394 Msa1105850:CDS
TAATAAAAGTTGTGTGGTGG+TGG 0.554767 7_3:+44889199 Msa1105850:five_prime_UTR
CAACATGGTGTGAAGAACTA+AGG 0.556695 7_3:-44890212 None:intergenic
ACCATGGAAGATTTACAAGT+CGG 0.557639 7_3:-44890514 None:intergenic
TTTGGGGTAACCCAAGATGT+TGG 0.568005 7_3:-44889355 None:intergenic
CCCGACTTGTAAATCTTCCA+TGG 0.569989 7_3:+44890513 Msa1105850:three_prime_UTR
AAATGATTCCGAGAAACTTG+TGG 0.574686 7_3:+44890437 Msa1105850:exon
TTTAAGTAGAAACGTGACTT+GGG 0.574926 7_3:-44890241 None:intergenic
GAAAGAAAAGGAACTGCACA+CGG 0.577234 7_3:-44890576 None:intergenic
GGTGTACAATGAAGCCTATG+AGG 0.578739 7_3:+44890609 Msa1105850:three_prime_UTR
TATGTTTAAGCTTATGCTAG+GGG 0.605205 7_3:+44890541 Msa1105850:three_prime_UTR
TGACTTGGGCACCGACAACA+TGG 0.611246 7_3:-44890227 None:intergenic
AGAAGATAATAAAAGTTGTG+TGG 0.628884 7_3:+44889193 Msa1105850:five_prime_UTR
TATAATTGTGGACTGAATGG+GGG 0.631220 7_3:+44890395 Msa1105850:CDS
TTTGTTGAAAGGGTGAGACA+AGG 0.631716 7_3:-44889273 None:intergenic
TATTGATTTGCAGTATGTGA+CGG 0.638900 7_3:+44890066 Msa1105850:intron
AGCTTAAACATAATTCACCA+TGG 0.659893 7_3:-44890530 None:intergenic
CATCACTAAACAAATCATTG+TGG 0.667819 7_3:+44890669 Msa1105850:three_prime_UTR
AAAGTGTTCATACAGATTTG+GGG 0.705802 7_3:-44889371 None:intergenic
AGATAATAAAAGTTGTGTGG+TGG 0.709277 7_3:+44889196 Msa1105850:five_prime_UTR
ATAGGCTTCATTGTACACCA+AGG 0.729059 7_3:-44890605 None:intergenic
AGAAAAGGAACTGCACACGG+AGG 0.730390 7_3:-44890573 None:intergenic
GGGTTTATGTACTATATACG+AGG 0.738348 7_3:-44890645 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTATTGATTAGTTTTA+TGG + chr7_3:44889437-44889456 Msa1105850:intron 10.0%
!! ACAATTTCATATATAAAATA+TGG + chr7_3:44889490-44889509 Msa1105850:intron 10.0%
!!! TAAATTATTGATTAGTTTTA+TGG + chr7_3:44889437-44889456 Msa1105850:intron 10.0%
!! ACAATTTCATATATAAAATA+TGG + chr7_3:44889490-44889509 Msa1105850:intron 10.0%
!! TTTGTCTATAAAAGTAAAAT+TGG - chr7_3:44889529-44889548 None:intergenic 15.0%
!! GGTAAATTAACTAAATTTAA+AGG + chr7_3:44889567-44889586 Msa1105850:intron 15.0%
!! AATTAAAAGAAATGCATATT+AGG + chr7_3:44890841-44890860 Msa1105850:three_prime_UTR 15.0%
!! TTTGTCTATAAAAGTAAAAT+TGG - chr7_3:44889529-44889548 None:intergenic 15.0%
!! GGTAAATTAACTAAATTTAA+AGG + chr7_3:44889567-44889586 Msa1105850:intron 15.0%
!! AATTAAAAGAAATGCATATT+AGG + chr7_3:44890841-44890860 Msa1105850:three_prime_UTR 15.0%
!!! CTCTAGGATAAAATTAAATT+TGG - chr7_3:44889142-44889161 None:intergenic 20.0%
!! TAGTTATCGAATATTTAATC+CGG + chr7_3:44889824-44889843 Msa1105850:intron 20.0%
!! CAATTCAAAATAGTAAATGT+TGG - chr7_3:44890286-44890305 None:intergenic 20.0%
!!! TCATATGTTTGTTAATTTGT+AGG + chr7_3:44890370-44890389 Msa1105850:intron 20.0%
!!! CATATGTTTGTTAATTTGTA+GGG + chr7_3:44890371-44890390 Msa1105850:intron 20.0%
!! ACTACTTCATACATATATTT+AGG - chr7_3:44890789-44890808 None:intergenic 20.0%
!! TAGGATAAAATTAAATTTGG+CGG - chr7_3:44889139-44889158 None:intergenic 20.0%
!!! CTCTAGGATAAAATTAAATT+TGG - chr7_3:44889142-44889161 None:intergenic 20.0%
!! TAGTTATCGAATATTTAATC+CGG + chr7_3:44889824-44889843 Msa1105850:intron 20.0%
!! CAATTCAAAATAGTAAATGT+TGG - chr7_3:44890286-44890305 None:intergenic 20.0%
!!! TCATATGTTTGTTAATTTGT+AGG + chr7_3:44890370-44890389 Msa1105850:intron 20.0%
!!! CATATGTTTGTTAATTTGTA+GGG + chr7_3:44890371-44890390 Msa1105850:intron 20.0%
!! ACTACTTCATACATATATTT+AGG - chr7_3:44890789-44890808 None:intergenic 20.0%
! ATCCTAGAGAACTATATTAA+AGG + chr7_3:44889153-44889172 Msa1105850:five_prime_UTR 25.0%
! AGAAGATAATAAAAGTTGTG+TGG + chr7_3:44889193-44889212 Msa1105850:five_prime_UTR 25.0%
!!! AAAAGTGTTCATACAGATTT+GGG - chr7_3:44889375-44889394 None:intergenic 25.0%
!!! TTAGTTTTATGGTCATGTTA+TGG + chr7_3:44889448-44889467 Msa1105850:intron 25.0%
! ATTTAGTTAATTTACCTCTC+TGG - chr7_3:44889563-44889582 None:intergenic 25.0%
!! AAATTTAAAGGCGAATCTTT+TGG + chr7_3:44889579-44889598 Msa1105850:intron 25.0%
! AAGAACTATGGTTCAAATTT+CGG - chr7_3:44889756-44889775 None:intergenic 25.0%
! CAAATGAGTTAAAAGAACTA+TGG - chr7_3:44889768-44889787 None:intergenic 25.0%
!! GTTTAAAATGAGATAGAAAC+CGG - chr7_3:44889846-44889865 None:intergenic 25.0%
! CTTAAAATTCTATGACATTG+AGG + chr7_3:44890258-44890277 Msa1105850:CDS 25.0%
! AATTTGTAGGGTTATAATTG+TGG + chr7_3:44890383-44890402 Msa1105850:intron 25.0%
! ATTATGTTTAAGCTTATGCT+AGG + chr7_3:44890539-44890558 Msa1105850:three_prime_UTR 25.0%
! TTATGTTTAAGCTTATGCTA+GGG + chr7_3:44890540-44890559 Msa1105850:three_prime_UTR 25.0%
!!! AATGATTTGTTTAGTGATGA+GGG - chr7_3:44890668-44890687 None:intergenic 25.0%
! TTGTTTGAAAATTGCACTTT+AGG + chr7_3:44890870-44890889 Msa1105850:three_prime_UTR 25.0%
! ATCCTAGAGAACTATATTAA+AGG + chr7_3:44889153-44889172 Msa1105850:five_prime_UTR 25.0%
! AGAAGATAATAAAAGTTGTG+TGG + chr7_3:44889193-44889212 Msa1105850:five_prime_UTR 25.0%
!!! AAAAGTGTTCATACAGATTT+GGG - chr7_3:44889375-44889394 None:intergenic 25.0%
!!! TTAGTTTTATGGTCATGTTA+TGG + chr7_3:44889448-44889467 Msa1105850:intron 25.0%
! ATTTAGTTAATTTACCTCTC+TGG - chr7_3:44889563-44889582 None:intergenic 25.0%
!! AAATTTAAAGGCGAATCTTT+TGG + chr7_3:44889579-44889598 Msa1105850:intron 25.0%
! AAGAACTATGGTTCAAATTT+CGG - chr7_3:44889756-44889775 None:intergenic 25.0%
! CAAATGAGTTAAAAGAACTA+TGG - chr7_3:44889768-44889787 None:intergenic 25.0%
!! GTTTAAAATGAGATAGAAAC+CGG - chr7_3:44889846-44889865 None:intergenic 25.0%
! CTTAAAATTCTATGACATTG+AGG + chr7_3:44890258-44890277 Msa1105850:CDS 25.0%
! AATTTGTAGGGTTATAATTG+TGG + chr7_3:44890383-44890402 Msa1105850:intron 25.0%
! ATTATGTTTAAGCTTATGCT+AGG + chr7_3:44890539-44890558 Msa1105850:three_prime_UTR 25.0%
! TTATGTTTAAGCTTATGCTA+GGG + chr7_3:44890540-44890559 Msa1105850:three_prime_UTR 25.0%
!!! AATGATTTGTTTAGTGATGA+GGG - chr7_3:44890668-44890687 None:intergenic 25.0%
! TTGTTTGAAAATTGCACTTT+AGG + chr7_3:44890870-44890889 Msa1105850:three_prime_UTR 25.0%
GACCTTTAATATAGTTCTCT+AGG - chr7_3:44889158-44889177 None:intergenic 30.0%
AGATAATAAAAGTTGTGTGG+TGG + chr7_3:44889196-44889215 Msa1105850:five_prime_UTR 30.0%
! TCTTTTTGATATCACTCACA+TGG - chr7_3:44889231-44889250 None:intergenic 30.0%
! AAAGCTAACGTTTGTTGAAA+GGG - chr7_3:44889286-44889305 None:intergenic 30.0%
! AAAGTGTTCATACAGATTTG+GGG - chr7_3:44889374-44889393 None:intergenic 30.0%
!! GAAAAGTGTTCATACAGATT+TGG - chr7_3:44889376-44889395 None:intergenic 30.0%
AAATATAGTAGTAACCAGAG+AGG + chr7_3:44889546-44889565 Msa1105850:intron 30.0%
!! TATTGATTTGCAGTATGTGA+CGG + chr7_3:44890066-44890085 Msa1105850:intron 30.0%
! GGATCAATACCAATATGTTT+TGG + chr7_3:44890100-44890119 Msa1105850:CDS 30.0%
TCAGTTTCACCAAAACATAT+TGG - chr7_3:44890112-44890131 None:intergenic 30.0%
!!! AATATGTTTTGGTGAAACTG+AGG + chr7_3:44890111-44890130 Msa1105850:CDS 30.0%
!! CTTAGTTTGTTGTTCAAATC+TGG - chr7_3:44890181-44890200 None:intergenic 30.0%
TTTAAGTAGAAACGTGACTT+GGG - chr7_3:44890244-44890263 None:intergenic 30.0%
!! TTTTAAGTAGAAACGTGACT+TGG - chr7_3:44890245-44890264 None:intergenic 30.0%
TCAAGAATAGTAAATGAGAG+TGG - chr7_3:44890331-44890350 None:intergenic 30.0%
! GTTATAATTGTGGACTGAAT+GGG + chr7_3:44890393-44890412 Msa1105850:CDS 30.0%
! TTATAATTGTGGACTGAATG+GGG + chr7_3:44890394-44890413 Msa1105850:CDS 30.0%
AGCTTAAACATAATTCACCA+TGG - chr7_3:44890533-44890552 None:intergenic 30.0%
TATGTTTAAGCTTATGCTAG+GGG + chr7_3:44890541-44890560 Msa1105850:three_prime_UTR 30.0%
!! CAATGATTTGTTTAGTGATG+AGG - chr7_3:44890669-44890688 None:intergenic 30.0%
CATCACTAAACAAATCATTG+TGG + chr7_3:44890669-44890688 Msa1105850:three_prime_UTR 30.0%
GACCTTTAATATAGTTCTCT+AGG - chr7_3:44889158-44889177 None:intergenic 30.0%
AGATAATAAAAGTTGTGTGG+TGG + chr7_3:44889196-44889215 Msa1105850:five_prime_UTR 30.0%
! TCTTTTTGATATCACTCACA+TGG - chr7_3:44889231-44889250 None:intergenic 30.0%
! AAAGCTAACGTTTGTTGAAA+GGG - chr7_3:44889286-44889305 None:intergenic 30.0%
! AAAGTGTTCATACAGATTTG+GGG - chr7_3:44889374-44889393 None:intergenic 30.0%
!! GAAAAGTGTTCATACAGATT+TGG - chr7_3:44889376-44889395 None:intergenic 30.0%
AAATATAGTAGTAACCAGAG+AGG + chr7_3:44889546-44889565 Msa1105850:intron 30.0%
!! TATTGATTTGCAGTATGTGA+CGG + chr7_3:44890066-44890085 Msa1105850:intron 30.0%
! GGATCAATACCAATATGTTT+TGG + chr7_3:44890100-44890119 Msa1105850:CDS 30.0%
TCAGTTTCACCAAAACATAT+TGG - chr7_3:44890112-44890131 None:intergenic 30.0%
!!! AATATGTTTTGGTGAAACTG+AGG + chr7_3:44890111-44890130 Msa1105850:CDS 30.0%
!! CTTAGTTTGTTGTTCAAATC+TGG - chr7_3:44890181-44890200 None:intergenic 30.0%
TTTAAGTAGAAACGTGACTT+GGG - chr7_3:44890244-44890263 None:intergenic 30.0%
!! TTTTAAGTAGAAACGTGACT+TGG - chr7_3:44890245-44890264 None:intergenic 30.0%
TCAAGAATAGTAAATGAGAG+TGG - chr7_3:44890331-44890350 None:intergenic 30.0%
! GTTATAATTGTGGACTGAAT+GGG + chr7_3:44890393-44890412 Msa1105850:CDS 30.0%
! TTATAATTGTGGACTGAATG+GGG + chr7_3:44890394-44890413 Msa1105850:CDS 30.0%
AGCTTAAACATAATTCACCA+TGG - chr7_3:44890533-44890552 None:intergenic 30.0%
TATGTTTAAGCTTATGCTAG+GGG + chr7_3:44890541-44890560 Msa1105850:three_prime_UTR 30.0%
!! CAATGATTTGTTTAGTGATG+AGG - chr7_3:44890669-44890688 None:intergenic 30.0%
CATCACTAAACAAATCATTG+TGG + chr7_3:44890669-44890688 Msa1105850:three_prime_UTR 30.0%
TAATAAAAGTTGTGTGGTGG+TGG + chr7_3:44889199-44889218 Msa1105850:five_prime_UTR 35.0%
! CAAAGCTAACGTTTGTTGAA+AGG - chr7_3:44889287-44889306 None:intergenic 35.0%
!! TCAACAAACGTTAGCTTTGA+TGG + chr7_3:44889288-44889307 Msa1105850:CDS 35.0%
TCTACAATTGCCAACATCTT+GGG + chr7_3:44889345-44889364 Msa1105850:CDS 35.0%
TTATGGTCATGTTATGGTCT+TGG + chr7_3:44889454-44889473 Msa1105850:intron 35.0%
TATGGTCATGTTATGGTCTT+GGG + chr7_3:44889455-44889474 Msa1105850:intron 35.0%
TAGAATTCAAGTGGGAAGTT+AGG - chr7_3:44889657-44889676 None:intergenic 35.0%
TGGTAAGCTAGAATTCAAGT+GGG - chr7_3:44889665-44889684 None:intergenic 35.0%
ATGGTAAGCTAGAATTCAAG+TGG - chr7_3:44889666-44889685 None:intergenic 35.0%
TTCTTCAAGGAAGGGAATTA+TGG - chr7_3:44889685-44889704 None:intergenic 35.0%
AATTCCCTTCCTTGAAGAAT+TGG + chr7_3:44889686-44889705 Msa1105850:intron 35.0%
TATGGTTCAAATTTCGGTGA+AGG - chr7_3:44889750-44889769 None:intergenic 35.0%
! TCTCATTTTAAACTAGTCCC+AGG + chr7_3:44889853-44889872 Msa1105850:intron 35.0%
TATGTGACGGTTTCATTAGA+AGG + chr7_3:44890079-44890098 Msa1105850:CDS 35.0%
TATGGTGAATTTGTGGCTAT+TGG + chr7_3:44890145-44890164 Msa1105850:CDS 35.0%
! GGTTATAATTGTGGACTGAA+TGG + chr7_3:44890392-44890411 Msa1105850:CDS 35.0%
! TATAATTGTGGACTGAATGG+GGG + chr7_3:44890395-44890414 Msa1105850:CDS 35.0%
ACAAGTTTCTCGGAATCATT+TGG - chr7_3:44890438-44890457 None:intergenic 35.0%
AAATGATTCCGAGAAACTTG+TGG + chr7_3:44890437-44890456 Msa1105850:exon 35.0%
CAATCTATCCACAAGTTTCT+CGG - chr7_3:44890448-44890467 None:intergenic 35.0%
CTTTACTTTCTCATGAGTTC+AGG + chr7_3:44890485-44890504 Msa1105850:three_prime_UTR 35.0%
ACCATGGAAGATTTACAAGT+CGG - chr7_3:44890517-44890536 None:intergenic 35.0%
GGGTTTATGTACTATATACG+AGG - chr7_3:44890648-44890667 None:intergenic 35.0%
AGTTCTCAAATCACACTTTC+AGG - chr7_3:44890819-44890838 None:intergenic 35.0%
TAATAAAAGTTGTGTGGTGG+TGG + chr7_3:44889199-44889218 Msa1105850:five_prime_UTR 35.0%
! CAAAGCTAACGTTTGTTGAA+AGG - chr7_3:44889287-44889306 None:intergenic 35.0%
!! TCAACAAACGTTAGCTTTGA+TGG + chr7_3:44889288-44889307 Msa1105850:CDS 35.0%
TCTACAATTGCCAACATCTT+GGG + chr7_3:44889345-44889364 Msa1105850:CDS 35.0%
TTATGGTCATGTTATGGTCT+TGG + chr7_3:44889454-44889473 Msa1105850:intron 35.0%
TATGGTCATGTTATGGTCTT+GGG + chr7_3:44889455-44889474 Msa1105850:intron 35.0%
TAGAATTCAAGTGGGAAGTT+AGG - chr7_3:44889657-44889676 None:intergenic 35.0%
TGGTAAGCTAGAATTCAAGT+GGG - chr7_3:44889665-44889684 None:intergenic 35.0%
ATGGTAAGCTAGAATTCAAG+TGG - chr7_3:44889666-44889685 None:intergenic 35.0%
TTCTTCAAGGAAGGGAATTA+TGG - chr7_3:44889685-44889704 None:intergenic 35.0%
AATTCCCTTCCTTGAAGAAT+TGG + chr7_3:44889686-44889705 Msa1105850:intron 35.0%
TATGGTTCAAATTTCGGTGA+AGG - chr7_3:44889750-44889769 None:intergenic 35.0%
! TCTCATTTTAAACTAGTCCC+AGG + chr7_3:44889853-44889872 Msa1105850:intron 35.0%
TATGTGACGGTTTCATTAGA+AGG + chr7_3:44890079-44890098 Msa1105850:CDS 35.0%
TATGGTGAATTTGTGGCTAT+TGG + chr7_3:44890145-44890164 Msa1105850:CDS 35.0%
! GGTTATAATTGTGGACTGAA+TGG + chr7_3:44890392-44890411 Msa1105850:CDS 35.0%
! TATAATTGTGGACTGAATGG+GGG + chr7_3:44890395-44890414 Msa1105850:CDS 35.0%
ACAAGTTTCTCGGAATCATT+TGG - chr7_3:44890438-44890457 None:intergenic 35.0%
AAATGATTCCGAGAAACTTG+TGG + chr7_3:44890437-44890456 Msa1105850:exon 35.0%
CAATCTATCCACAAGTTTCT+CGG - chr7_3:44890448-44890467 None:intergenic 35.0%
CTTTACTTTCTCATGAGTTC+AGG + chr7_3:44890485-44890504 Msa1105850:three_prime_UTR 35.0%
ACCATGGAAGATTTACAAGT+CGG - chr7_3:44890517-44890536 None:intergenic 35.0%
GGGTTTATGTACTATATACG+AGG - chr7_3:44890648-44890667 None:intergenic 35.0%
AGTTCTCAAATCACACTTTC+AGG - chr7_3:44890819-44890838 None:intergenic 35.0%
TTTGTTGAAAGGGTGAGACA+AGG - chr7_3:44889276-44889295 None:intergenic 40.0%
!! AGAGTTGAGTTGAGAGAGTA+TGG - chr7_3:44889328-44889347 None:intergenic 40.0%
CTCTACAATTGCCAACATCT+TGG + chr7_3:44889344-44889363 Msa1105850:CDS 40.0%
! ATGGTCATGTTATGGTCTTG+GGG + chr7_3:44889456-44889475 Msa1105850:intron 40.0%
! GTTATGGTCTTGGGGAAATA+TGG + chr7_3:44889464-44889483 Msa1105850:intron 40.0%
CTTAACCCTCCAATTCTTCA+AGG - chr7_3:44889698-44889717 None:intergenic 40.0%
! ATTTTAAACTAGTCCCAGGC+AGG + chr7_3:44889857-44889876 Msa1105850:intron 40.0%
GTTAGGCCTCTTAATCTGTT+GGG - chr7_3:44889888-44889907 None:intergenic 40.0%
AGGCCTAACGCAAAATACAA+GGG + chr7_3:44889899-44889918 Msa1105850:intron 40.0%
ACAAATTCACCATATGCTGC+TGG - chr7_3:44890139-44890158 None:intergenic 40.0%
AGCAGCATATGGTGAATTTG+TGG + chr7_3:44890138-44890157 Msa1105850:CDS 40.0%
CAACATGGTGTGAAGAACTA+AGG - chr7_3:44890215-44890234 None:intergenic 40.0%
AGTTCTTCACACCATGTTGT+CGG + chr7_3:44890216-44890235 Msa1105850:CDS 40.0%
CCATGGAAGATTTACAAGTC+GGG - chr7_3:44890516-44890535 None:intergenic 40.0%
GAAAGAAAAGGAACTGCACA+CGG - chr7_3:44890579-44890598 None:intergenic 40.0%
! TGTGCAGTTCCTTTTCTTTC+CGG + chr7_3:44890579-44890598 Msa1105850:three_prime_UTR 40.0%
TCATTGTACACCAAGGAAAC+CGG - chr7_3:44890601-44890620 None:intergenic 40.0%
ATAGGCTTCATTGTACACCA+AGG - chr7_3:44890608-44890627 None:intergenic 40.0%
GTCTTGTGTTCAAACCTCAT+AGG - chr7_3:44890626-44890645 None:intergenic 40.0%
TTTGTTGAAAGGGTGAGACA+AGG - chr7_3:44889276-44889295 None:intergenic 40.0%
!! AGAGTTGAGTTGAGAGAGTA+TGG - chr7_3:44889328-44889347 None:intergenic 40.0%
CTCTACAATTGCCAACATCT+TGG + chr7_3:44889344-44889363 Msa1105850:CDS 40.0%
! ATGGTCATGTTATGGTCTTG+GGG + chr7_3:44889456-44889475 Msa1105850:intron 40.0%
! GTTATGGTCTTGGGGAAATA+TGG + chr7_3:44889464-44889483 Msa1105850:intron 40.0%
CTTAACCCTCCAATTCTTCA+AGG - chr7_3:44889698-44889717 None:intergenic 40.0%
! ATTTTAAACTAGTCCCAGGC+AGG + chr7_3:44889857-44889876 Msa1105850:intron 40.0%
GTTAGGCCTCTTAATCTGTT+GGG - chr7_3:44889888-44889907 None:intergenic 40.0%
AGGCCTAACGCAAAATACAA+GGG + chr7_3:44889899-44889918 Msa1105850:intron 40.0%
ACAAATTCACCATATGCTGC+TGG - chr7_3:44890139-44890158 None:intergenic 40.0%
AGCAGCATATGGTGAATTTG+TGG + chr7_3:44890138-44890157 Msa1105850:CDS 40.0%
CAACATGGTGTGAAGAACTA+AGG - chr7_3:44890215-44890234 None:intergenic 40.0%
AGTTCTTCACACCATGTTGT+CGG + chr7_3:44890216-44890235 Msa1105850:CDS 40.0%
CCATGGAAGATTTACAAGTC+GGG - chr7_3:44890516-44890535 None:intergenic 40.0%
GAAAGAAAAGGAACTGCACA+CGG - chr7_3:44890579-44890598 None:intergenic 40.0%
! TGTGCAGTTCCTTTTCTTTC+CGG + chr7_3:44890579-44890598 Msa1105850:three_prime_UTR 40.0%
TCATTGTACACCAAGGAAAC+CGG - chr7_3:44890601-44890620 None:intergenic 40.0%
ATAGGCTTCATTGTACACCA+AGG - chr7_3:44890608-44890627 None:intergenic 40.0%
GTCTTGTGTTCAAACCTCAT+AGG - chr7_3:44890626-44890645 None:intergenic 40.0%
! TTTGGGGTAACCCAAGATGT+TGG - chr7_3:44889358-44889377 None:intergenic 45.0%
TCCCTTCCTTGAAGAATTGG+AGG + chr7_3:44889689-44889708 Msa1105850:intron 45.0%
CCCTCCAATTCTTCAAGGAA+GGG - chr7_3:44889693-44889712 None:intergenic 45.0%
CCCTTCCTTGAAGAATTGGA+GGG + chr7_3:44889690-44889709 Msa1105850:intron 45.0%
ACCCTCCAATTCTTCAAGGA+AGG - chr7_3:44889694-44889713 None:intergenic 45.0%
CGTTAGGCCTCTTAATCTGT+TGG - chr7_3:44889889-44889908 None:intergenic 45.0%
GAGGCCTAACGCAAAATACA+AGG + chr7_3:44889898-44889917 Msa1105850:intron 45.0%
! GCTCCCTTGTATTTTGCGTT+AGG - chr7_3:44889905-44889924 None:intergenic 45.0%
! CCCGACTTGTAAATCTTCCA+TGG + chr7_3:44890513-44890532 Msa1105850:three_prime_UTR 45.0%
CCAAGGAAACCGGAAAGAAA+AGG - chr7_3:44890591-44890610 None:intergenic 45.0%
! CCTTTTCTTTCCGGTTTCCT+TGG + chr7_3:44890588-44890607 Msa1105850:three_prime_UTR 45.0%
GGTGTACAATGAAGCCTATG+AGG + chr7_3:44890609-44890628 Msa1105850:three_prime_UTR 45.0%
! TTTGGGGTAACCCAAGATGT+TGG - chr7_3:44889358-44889377 None:intergenic 45.0%
TCCCTTCCTTGAAGAATTGG+AGG + chr7_3:44889689-44889708 Msa1105850:intron 45.0%
CCCTCCAATTCTTCAAGGAA+GGG - chr7_3:44889693-44889712 None:intergenic 45.0%
CCCTTCCTTGAAGAATTGGA+GGG + chr7_3:44889690-44889709 Msa1105850:intron 45.0%
ACCCTCCAATTCTTCAAGGA+AGG - chr7_3:44889694-44889713 None:intergenic 45.0%
CGTTAGGCCTCTTAATCTGT+TGG - chr7_3:44889889-44889908 None:intergenic 45.0%
GAGGCCTAACGCAAAATACA+AGG + chr7_3:44889898-44889917 Msa1105850:intron 45.0%
! GCTCCCTTGTATTTTGCGTT+AGG - chr7_3:44889905-44889924 None:intergenic 45.0%
! CCCGACTTGTAAATCTTCCA+TGG + chr7_3:44890513-44890532 Msa1105850:three_prime_UTR 45.0%
CCAAGGAAACCGGAAAGAAA+AGG - chr7_3:44890591-44890610 None:intergenic 45.0%
! CCTTTTCTTTCCGGTTTCCT+TGG + chr7_3:44890588-44890607 Msa1105850:three_prime_UTR 45.0%
GGTGTACAATGAAGCCTATG+AGG + chr7_3:44890609-44890628 Msa1105850:three_prime_UTR 45.0%
AGAAAAGGAACTGCACACGG+AGG - chr7_3:44890576-44890595 None:intergenic 50.0%
AGAAAAGGAACTGCACACGG+AGG - chr7_3:44890576-44890595 None:intergenic 50.0%
AAACTAGTCCCAGGCAGGAC+CGG + chr7_3:44889862-44889881 Msa1105850:intron 55.0%
GACCGGCCCAACAGATTAAG+AGG + chr7_3:44889879-44889898 Msa1105850:intron 55.0%
GGCCTCTTAATCTGTTGGGC+CGG - chr7_3:44889884-44889903 None:intergenic 55.0%
ACTGAGGAGCCAGCAGCATA+TGG + chr7_3:44890127-44890146 Msa1105850:CDS 55.0%
!! TGACTTGGGCACCGACAACA+TGG - chr7_3:44890230-44890249 None:intergenic 55.0%
TGGACTGAATGGGGGTCTCA+TGG + chr7_3:44890403-44890422 Msa1105850:CDS 55.0%
ACTGAATGGGGGTCTCATGG+TGG + chr7_3:44890406-44890425 Msa1105850:CDS 55.0%
AAACTAGTCCCAGGCAGGAC+CGG + chr7_3:44889862-44889881 Msa1105850:intron 55.0%
GACCGGCCCAACAGATTAAG+AGG + chr7_3:44889879-44889898 Msa1105850:intron 55.0%
GGCCTCTTAATCTGTTGGGC+CGG - chr7_3:44889884-44889903 None:intergenic 55.0%
ACTGAGGAGCCAGCAGCATA+TGG + chr7_3:44890127-44890146 Msa1105850:CDS 55.0%
!! TGACTTGGGCACCGACAACA+TGG - chr7_3:44890230-44890249 None:intergenic 55.0%
TGGACTGAATGGGGGTCTCA+TGG + chr7_3:44890403-44890422 Msa1105850:CDS 55.0%
ACTGAATGGGGGTCTCATGG+TGG + chr7_3:44890406-44890425 Msa1105850:CDS 55.0%
CTGTTGGGCCGGTCCTGCCT+GGG - chr7_3:44889873-44889892 None:intergenic 70.0%
TCTGTTGGGCCGGTCCTGCC+TGG - chr7_3:44889874-44889893 None:intergenic 70.0%
CTGTTGGGCCGGTCCTGCCT+GGG - chr7_3:44889873-44889892 None:intergenic 70.0%
TCTGTTGGGCCGGTCCTGCC+TGG - chr7_3:44889874-44889893 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 44889138 44890907 44889138 ID=Msa1105850;Name=Msa1105850
chr7_3 mRNA 44889138 44890907 44889138 ID=Msa1105850-mRNA-1;Parent=Msa1105850;Name=Msa1105850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=132|1|1|1|1|1|3|465|120
chr7_3 exon 44889138 44889380 44889138 ID=Msa1105850-mRNA-1:exon:9228;Parent=Msa1105850-mRNA-1
chr7_3 exon 44890079 44890279 44890079 ID=Msa1105850-mRNA-1:exon:9229;Parent=Msa1105850-mRNA-1
chr7_3 exon 44890392 44890907 44890392 ID=Msa1105850-mRNA-1:exon:9230;Parent=Msa1105850-mRNA-1
chr7_3 five_prime_UTR 44889138 44889269 44889138 ID=Msa1105850-mRNA-1:five_prime_utr;Parent=Msa1105850-mRNA-1
chr7_3 CDS 44889270 44889380 44889270 ID=Msa1105850-mRNA-1:cds;Parent=Msa1105850-mRNA-1
chr7_3 CDS 44890079 44890279 44890079 ID=Msa1105850-mRNA-1:cds;Parent=Msa1105850-mRNA-1
chr7_3 CDS 44890392 44890442 44890392 ID=Msa1105850-mRNA-1:cds;Parent=Msa1105850-mRNA-1
chr7_3 three_prime_UTR 44890443 44890907 44890443 ID=Msa1105850-mRNA-1:three_prime_utr;Parent=Msa1105850-mRNA-1
Gene Sequence

>Msa1105850

ATGCCTTGTCTCACCCTTTCAACAAACGTTAGCTTTGATGGTGTAGATGTATCTTCCATACTCTCTCAACTCAACTCTACAATTGCCAACATCTTGGGTTACCCCAAATCTTATGTGACGGTTTCATTAGAAGGATCAATACCAATATGTTTTGGTGAAACTGAGGAGCCAGCAGCATATGGTGAATTTGTGGCTATTGGTATTCTCAATCCAGATTTGAACAACAAACTAAGTGCTGAAATTGCCTTAGTTCTTCACACCATGTTGTCGGTGCCCAAGTCACGTTTCTACTTAAAATTCTATGACATTGAGGGTTATAATTGTGGACTGAATGGGGGTCTCATGGTGGTTGAATCCAAATGA

Protein sequence

>Msa1105850

MPCLTLSTNVSFDGVDVSSILSQLNSTIANILGYPKSYVTVSLEGSIPICFGETEEPAAYGEFVAIGILNPDLNNKLSAEIALVLHTMLSVPKSRFYLKFYDIEGYNCGLNGGLMVVESK*