Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107110 | XP_003623151.1 | 95.000 | 520 | 21 | 3 | 1 | 519 | 1 | 516 | 0.0 | 963 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107110 | sp|Q9SJJ3|BLH8_ARATH | 50.794 | 252 | 115 | 4 | 131 | 380 | 252 | 496 | 4.51e-75 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107110 | G7L5K2 | 95.000 | 520 | 21 | 3 | 1 | 519 | 1 | 516 | 0.0 | 963 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1107110 | TF | HB-BELL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1023130 | Msa1107110 | 0.802673 | 5.017491e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107110 | MtrunA17_Chr7g0240371 | 95.000 | 520 | 21 | 3 | 1 | 519 | 1 | 516 | 0.0 | 963 |
| Msa1107110 | MtrunA17_Chr4g0008591 | 50.164 | 608 | 204 | 17 | 2 | 519 | 3 | 601 | 1.28e-168 | 489 |
| Msa1107110 | MtrunA17_Chr4g0028701 | 42.543 | 409 | 166 | 13 | 127 | 469 | 231 | 636 | 6.81e-83 | 270 |
| Msa1107110 | MtrunA17_Chr2g0327021 | 47.719 | 285 | 109 | 7 | 128 | 380 | 235 | 511 | 1.68e-76 | 252 |
| Msa1107110 | MtrunA17_Chr8g0387321 | 35.763 | 439 | 214 | 12 | 141 | 516 | 185 | 618 | 7.22e-65 | 221 |
| Msa1107110 | MtrunA17_Chr8g0373801 | 42.532 | 308 | 135 | 8 | 122 | 395 | 364 | 663 | 2.38e-63 | 221 |
| Msa1107110 | MtrunA17_Chr1g0155681 | 40.196 | 306 | 148 | 6 | 145 | 427 | 174 | 467 | 2.64e-61 | 212 |
| Msa1107110 | MtrunA17_Chr4g0025521 | 44.128 | 281 | 119 | 7 | 141 | 395 | 217 | 485 | 3.47e-61 | 213 |
| Msa1107110 | MtrunA17_Chr5g0403251 | 42.254 | 284 | 137 | 7 | 137 | 395 | 330 | 611 | 5.18e-61 | 213 |
| Msa1107110 | MtrunA17_Chr3g0141941 | 40.909 | 264 | 128 | 6 | 137 | 378 | 158 | 415 | 3.26e-59 | 204 |
| Msa1107110 | MtrunA17_Chr3g0141931 | 42.593 | 270 | 129 | 7 | 138 | 386 | 162 | 426 | 5.38e-59 | 201 |
| Msa1107110 | MtrunA17_Chr1g0177751 | 44.674 | 291 | 132 | 7 | 140 | 409 | 160 | 442 | 7.79e-59 | 206 |
| Msa1107110 | MtrunA17_Chr7g0267481 | 53.061 | 196 | 82 | 4 | 203 | 392 | 250 | 441 | 1.69e-58 | 205 |
| Msa1107110 | MtrunA17_Chr1g0151681 | 30.925 | 346 | 196 | 12 | 61 | 375 | 158 | 491 | 4.48e-38 | 146 |
| Msa1107110 | MtrunA17_Chr5g0398181 | 38.889 | 90 | 50 | 2 | 297 | 381 | 201 | 290 | 2.03e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107110 | AT2G27990.1 | 50.794 | 252 | 115 | 4 | 131 | 380 | 252 | 496 | 4.59e-76 | 251 |
| Msa1107110 | AT2G16400.1 | 36.750 | 400 | 213 | 11 | 135 | 519 | 108 | 482 | 3.98e-67 | 224 |
| Msa1107110 | AT1G75410.1 | 46.415 | 265 | 110 | 9 | 136 | 378 | 162 | 416 | 6.37e-67 | 225 |
| Msa1107110 | AT1G75410.2 | 46.415 | 265 | 110 | 9 | 136 | 378 | 162 | 416 | 6.37e-67 | 225 |
| Msa1107110 | AT1G19700.1 | 44.610 | 269 | 114 | 7 | 137 | 378 | 161 | 421 | 8.36e-67 | 225 |
| Msa1107110 | AT1G19700.3 | 44.610 | 269 | 114 | 7 | 137 | 378 | 161 | 421 | 8.36e-67 | 225 |
| Msa1107110 | AT1G19700.5 | 44.610 | 269 | 114 | 7 | 137 | 378 | 161 | 421 | 8.36e-67 | 225 |
| Msa1107110 | AT1G19700.4 | 44.610 | 269 | 114 | 7 | 137 | 378 | 161 | 421 | 8.36e-67 | 225 |
| Msa1107110 | AT1G19700.2 | 44.610 | 269 | 114 | 7 | 137 | 378 | 161 | 421 | 8.36e-67 | 225 |
| Msa1107110 | AT4G34610.2 | 38.936 | 357 | 164 | 12 | 145 | 468 | 144 | 479 | 2.66e-61 | 210 |
| Msa1107110 | AT4G34610.4 | 38.936 | 357 | 164 | 12 | 145 | 468 | 144 | 479 | 2.66e-61 | 210 |
| Msa1107110 | AT4G34610.3 | 38.936 | 357 | 164 | 12 | 145 | 468 | 144 | 479 | 2.66e-61 | 210 |
| Msa1107110 | AT4G34610.1 | 38.936 | 357 | 164 | 12 | 145 | 468 | 144 | 479 | 2.66e-61 | 210 |
| Msa1107110 | AT5G41410.1 | 34.965 | 429 | 216 | 14 | 142 | 518 | 194 | 611 | 3.06e-58 | 204 |
| Msa1107110 | AT4G36870.2 | 45.136 | 257 | 116 | 8 | 141 | 375 | 312 | 565 | 9.65e-58 | 204 |
| Msa1107110 | AT4G36870.1 | 45.136 | 257 | 116 | 8 | 141 | 375 | 312 | 565 | 9.65e-58 | 204 |
| Msa1107110 | AT2G27220.1 | 40.441 | 272 | 133 | 7 | 147 | 409 | 82 | 333 | 2.85e-57 | 197 |
| Msa1107110 | AT2G27220.3 | 40.441 | 272 | 133 | 7 | 147 | 409 | 82 | 333 | 2.85e-57 | 197 |
| Msa1107110 | AT2G23760.2 | 42.803 | 264 | 113 | 7 | 141 | 375 | 237 | 491 | 4.23e-57 | 201 |
| Msa1107110 | AT2G23760.1 | 42.803 | 264 | 113 | 7 | 141 | 375 | 237 | 491 | 4.23e-57 | 201 |
| Msa1107110 | AT2G23760.3 | 42.803 | 264 | 113 | 7 | 141 | 375 | 237 | 491 | 4.23e-57 | 201 |
| Msa1107110 | AT2G35940.3 | 44.061 | 261 | 109 | 5 | 142 | 369 | 190 | 446 | 2.72e-55 | 197 |
| Msa1107110 | AT2G35940.1 | 44.061 | 261 | 109 | 5 | 142 | 369 | 190 | 446 | 2.72e-55 | 197 |
| Msa1107110 | AT2G35940.2 | 44.061 | 261 | 109 | 5 | 142 | 369 | 190 | 446 | 2.72e-55 | 197 |
| Msa1107110 | AT2G27220.2 | 38.732 | 284 | 139 | 7 | 147 | 409 | 82 | 351 | 1.03e-53 | 188 |
| Msa1107110 | AT1G75430.1 | 37.500 | 272 | 143 | 4 | 142 | 390 | 17 | 284 | 5.65e-53 | 181 |
| Msa1107110 | AT1G75410.3 | 43.802 | 242 | 104 | 9 | 136 | 355 | 162 | 393 | 1.41e-52 | 184 |
| Msa1107110 | AT2G23760.4 | 32.200 | 441 | 174 | 14 | 141 | 469 | 237 | 664 | 7.24e-48 | 176 |
| Msa1107110 | AT2G27990.2 | 42.718 | 206 | 109 | 4 | 131 | 334 | 252 | 450 | 6.94e-45 | 164 |
| Msa1107110 | AT4G36870.4 | 41.597 | 238 | 114 | 8 | 141 | 356 | 312 | 546 | 4.98e-44 | 164 |
| Msa1107110 | AT4G36870.3 | 41.102 | 236 | 114 | 8 | 141 | 354 | 312 | 544 | 1.07e-42 | 160 |
| Msa1107110 | AT4G32980.1 | 31.633 | 294 | 179 | 7 | 96 | 375 | 154 | 439 | 1.86e-38 | 147 |
| Msa1107110 | AT4G32980.2 | 31.633 | 294 | 179 | 7 | 96 | 375 | 154 | 439 | 1.86e-38 | 147 |
| Msa1107110 | AT1G75430.2 | 30.556 | 216 | 123 | 4 | 142 | 334 | 17 | 228 | 1.58e-25 | 106 |
| Msa1107110 | AT1G62990.1 | 42.105 | 76 | 39 | 2 | 297 | 367 | 200 | 275 | 2.29e-11 | 65.1 |
| Msa1107110 | AT1G23380.2 | 50.909 | 55 | 27 | 0 | 315 | 369 | 255 | 309 | 3.80e-11 | 65.1 |
| Msa1107110 | AT1G23380.1 | 50.909 | 55 | 27 | 0 | 315 | 369 | 253 | 307 | 4.11e-11 | 64.7 |
| Msa1107110 | AT1G70510.1 | 50.909 | 55 | 27 | 0 | 315 | 369 | 237 | 291 | 9.04e-11 | 63.5 |
| Msa1107110 | AT1G70510.2 | 50.909 | 55 | 27 | 0 | 315 | 369 | 241 | 295 | 9.76e-11 | 63.5 |
Find 117 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGATCTTATACGTAAAT+TGG | 0.128783 | 7_3:+48519870 | None:intergenic |
| GAAACCTGCACAACAATTAT+TGG | 0.152856 | 7_3:-48519265 | Msa1107110:CDS |
| CAATTCCAGAATAGGCAATT+TGG | 0.193263 | 7_3:-48515944 | Msa1107110:CDS |
| ACTTCATTTGAATATGTTTC+CGG | 0.224546 | 7_3:-48517277 | Msa1107110:CDS |
| CTCTCCCAAATTGCCTATTC+TGG | 0.259082 | 7_3:+48515939 | None:intergenic |
| AACTACTAACCATGTTTCTT+TGG | 0.259391 | 7_3:-48515853 | Msa1107110:three_prime_UTR |
| CTTCATCAAAATCATGGAAT+TGG | 0.260611 | 7_3:-48516049 | Msa1107110:CDS |
| TCATAATCACAAGATAAATT+AGG | 0.276291 | 7_3:-48515828 | Msa1107110:three_prime_UTR |
| CTGTTGTTGATCATGTTTCT+AGG | 0.276539 | 7_3:-48519350 | Msa1107110:CDS |
| ATTGAAATTTGATTCTAGTT+TGG | 0.276820 | 7_3:-48515801 | Msa1107110:three_prime_UTR |
| CGCAGCTCCGTATGCAAGTT+TGG | 0.286462 | 7_3:-48517245 | Msa1107110:CDS |
| TTTGAATATGTTTCCGGCCT+TGG | 0.297614 | 7_3:-48517271 | Msa1107110:CDS |
| TTGAAATTTGATTCTAGTTT+GGG | 0.301180 | 7_3:-48515800 | Msa1107110:three_prime_UTR |
| TCATCTCTTTGTGATTCCTT+TGG | 0.313062 | 7_3:+48516289 | None:intergenic |
| AGCGTGCTGTCAGTGTTCTT+AGG | 0.318063 | 7_3:-48517012 | Msa1107110:CDS |
| TTTCAAGAATCTAAAATGTT+TGG | 0.323804 | 7_3:+48517207 | None:intergenic |
| TCTAGGAACACGGTTCCATT+AGG | 0.325865 | 7_3:-48519333 | Msa1107110:CDS |
| GAAGGTAAAGGTGAATAGTT+AGG | 0.327476 | 7_3:+48519591 | None:intergenic |
| CAGCAGCACTCATCTGATTC+TGG | 0.330179 | 7_3:+48519391 | None:intergenic |
| GTTCCATTAGGGCCATTTAC+AGG | 0.333535 | 7_3:-48519321 | Msa1107110:CDS |
| TCAATCCTGAACAGGTTTGC+AGG | 0.345113 | 7_3:-48517339 | Msa1107110:intron |
| ACAGAAGCATAACCTGTAAA+TGG | 0.347909 | 7_3:+48519309 | None:intergenic |
| AATTCCAGAATAGGCAATTT+GGG | 0.349127 | 7_3:-48515943 | Msa1107110:CDS |
| GATGATAAAGATAAAGATAA+AGG | 0.358607 | 7_3:+48519426 | None:intergenic |
| AAGATTCAATGAAACTTGTT+TGG | 0.360190 | 7_3:+48519628 | None:intergenic |
| TGCTGCTGATGCATCTTTGA+TGG | 0.376363 | 7_3:-48519199 | Msa1107110:CDS |
| ATGTGTTACAGGTGTCTAAT+TGG | 0.376653 | 7_3:-48516384 | Msa1107110:intron |
| GCGTGCTGTCAGTGTTCTTA+GGG | 0.378409 | 7_3:-48517011 | Msa1107110:CDS |
| TAACCTGTAAATGGCCCTAA+TGG | 0.383820 | 7_3:+48519318 | None:intergenic |
| GGTAACAGTGGAATGATTAA+TGG | 0.384759 | 7_3:-48519165 | Msa1107110:CDS |
| TTTCTCTTCTGCTTTGTTGT+GGG | 0.388583 | 7_3:+48519673 | None:intergenic |
| GATGATCTTATACGTAAATT+GGG | 0.393261 | 7_3:+48519871 | None:intergenic |
| TAAATGCAAGAGTAAGGCTT+TGG | 0.400143 | 7_3:-48516357 | Msa1107110:CDS |
| TGAGGAGTTTGATAAAGAAA+AGG | 0.401340 | 7_3:+48519519 | None:intergenic |
| AAAATCAATAATAAAGAATA+GGG | 0.402142 | 7_3:+48519751 | None:intergenic |
| GAGGAGTTTGATAAAGAAAA+GGG | 0.406406 | 7_3:+48519520 | None:intergenic |
| CCTCTTTGAGGTCGCCAAAC+AGG | 0.409862 | 7_3:+48517043 | None:intergenic |
| AACCCTGGCCTTTGACTGTA+AGG | 0.411066 | 7_3:+48517085 | None:intergenic |
| TTCATCAAAATCATGGAATT+GGG | 0.411246 | 7_3:-48516048 | Msa1107110:CDS |
| CTAGGAACACGGTTCCATTA+GGG | 0.419262 | 7_3:-48519332 | Msa1107110:CDS |
| GGTTTATAAATGCAAGAGTA+AGG | 0.420041 | 7_3:-48516363 | Msa1107110:CDS |
| AACATGTTCAACAACCTGTT+TGG | 0.421813 | 7_3:-48517057 | Msa1107110:CDS |
| TCATCCAATAATTGTTGTGC+AGG | 0.423901 | 7_3:+48519261 | None:intergenic |
| CGCTCAGGGAGCCCTCTTTG+AGG | 0.433129 | 7_3:+48517031 | None:intergenic |
| ACTGACCAGCTTCAGTATAT+CGG | 0.436419 | 7_3:-48517175 | Msa1107110:CDS |
| AGGTGAATAGTTAGGGTTAA+GGG | 0.439612 | 7_3:+48519599 | None:intergenic |
| GATTCTAGTTTGGGATTAAG+TGG | 0.440527 | 7_3:-48515791 | Msa1107110:three_prime_UTR |
| CTAATGTTGGCTAAACAAAC+TGG | 0.446507 | 7_3:-48516507 | Msa1107110:CDS |
| TTGTATACATGATTCATTTG+AGG | 0.448929 | 7_3:+48519501 | None:intergenic |
| AAGGTGAATAGTTAGGGTTA+AGG | 0.455170 | 7_3:+48519598 | None:intergenic |
| CTCGGTCTTCATCAAAATCA+TGG | 0.458609 | 7_3:-48516055 | Msa1107110:CDS |
| AATCAACAAGTTGGTAATGT+TGG | 0.479434 | 7_3:-48516127 | Msa1107110:CDS |
| GTTTAGTACTATGGCTGATG+AGG | 0.481895 | 7_3:-48519718 | Msa1107110:exon |
| AAGGTAAAGGTGAATAGTTA+GGG | 0.487879 | 7_3:+48519592 | None:intergenic |
| GCCCCTTACAGTCAAAGGCC+AGG | 0.493461 | 7_3:-48517088 | Msa1107110:CDS |
| AGAACACTGACAGCACGCTC+AGG | 0.494420 | 7_3:+48517016 | None:intergenic |
| GATAGTGAAATGAAAAGATA+TGG | 0.499077 | 7_3:+48519832 | None:intergenic |
| TTGCTTGCGATACTATGATT+CGG | 0.499860 | 7_3:+48516148 | None:intergenic |
| TTTAGTACTATGGCTGATGA+GGG | 0.503174 | 7_3:-48519717 | Msa1107110:exon |
| TTACTGTTTATAGCATCTAA+AGG | 0.509725 | 7_3:+48519543 | None:intergenic |
| GATGATACACTTGGTGATGA+TGG | 0.511653 | 7_3:-48519135 | Msa1107110:CDS |
| ATGTGTATTTCCTCCACCAT+TGG | 0.521327 | 7_3:+48516331 | None:intergenic |
| CGGAGCTGCGTTACCAAGGC+CGG | 0.523680 | 7_3:+48517258 | None:intergenic |
| CAACATTAGCTTGTCAGTAT+CGG | 0.536944 | 7_3:+48516521 | None:intergenic |
| CCATCGCCGTTGTGAAACCT+TGG | 0.538655 | 7_3:+48517112 | None:intergenic |
| TTATCAGATAAGCAATAGAA+AGG | 0.539123 | 7_3:-48517143 | Msa1107110:CDS |
| CCAAGGTTTCACAACGGCGA+TGG | 0.539915 | 7_3:-48517112 | Msa1107110:CDS |
| ATCGCAAGCAATCAACAAGT+TGG | 0.542496 | 7_3:-48516136 | Msa1107110:CDS |
| CTGTCAGTGTTCTTAGGGGA+TGG | 0.544619 | 7_3:-48517006 | Msa1107110:CDS |
| AAAAGAGAGAAAGAGAGTGA+TGG | 0.545762 | 7_3:+48519787 | None:intergenic |
| CCCTGGCCTTTGACTGTAAG+GGG | 0.546356 | 7_3:+48517087 | None:intergenic |
| GGAGTGAGCATGATGAATAA+TGG | 0.547619 | 7_3:-48516106 | Msa1107110:CDS |
| AACTTGTCTGTGGAGGTAGA+TGG | 0.550200 | 7_3:+48516223 | None:intergenic |
| ATGGAGCCCCTTACAGTCAA+AGG | 0.556822 | 7_3:-48517093 | Msa1107110:CDS |
| ACTTGCCGATATACTGAAGC+TGG | 0.560095 | 7_3:+48517170 | None:intergenic |
| CGATACTGACAAGCTAATGT+TGG | 0.560183 | 7_3:-48516520 | Msa1107110:CDS |
| ATTAGCTTGTCAGTATCGGT+AGG | 0.560382 | 7_3:+48516525 | None:intergenic |
| AAAGAGAGTGATGGAAGTGA+TGG | 0.560810 | 7_3:+48519796 | None:intergenic |
| AGTGAAGGATCGTAAAGAGA+AGG | 0.562891 | 7_3:+48519573 | None:intergenic |
| GGATCGTAAAGAGAAGGTAA+AGG | 0.570346 | 7_3:+48519579 | None:intergenic |
| TTGGATGAGATATGTGATGT+TGG | 0.571767 | 7_3:-48519246 | Msa1107110:CDS |
| TTTATAGCCAAACTTGCATA+CGG | 0.572894 | 7_3:+48517238 | None:intergenic |
| AACTGGTCTATCTCGTAACC+AGG | 0.577110 | 7_3:-48516490 | Msa1107110:intron |
| AATGGTGTATCTTTGACGCT+CGG | 0.578190 | 7_3:-48516073 | Msa1107110:CDS |
| TCTTTGATGGAAACTAATCA+TGG | 0.579826 | 7_3:-48519186 | Msa1107110:CDS |
| GCTTTGGAAGCCAATGGTGG+AGG | 0.582607 | 7_3:-48516341 | Msa1107110:CDS |
| GAACACTGACAGCACGCTCA+GGG | 0.586445 | 7_3:+48517017 | None:intergenic |
| CTGTTTGGCGACCTCAAAGA+GGG | 0.600827 | 7_3:-48517042 | Msa1107110:CDS |
| GAATCTAAAATGTTTGGACA+TGG | 0.606211 | 7_3:+48517213 | None:intergenic |
| CCCCTTACAGTCAAAGGCCA+GGG | 0.608843 | 7_3:-48517087 | Msa1107110:CDS |
| GAAACTAATCATGGTAACAG+TGG | 0.611291 | 7_3:-48519177 | Msa1107110:CDS |
| ATTATTAACAGTGCTTGATG+AGG | 0.616917 | 7_3:-48519094 | Msa1107110:intron |
| AATAATGGTGCAACAAGCAA+TGG | 0.619469 | 7_3:-48516091 | Msa1107110:CDS |
| TGAATAGTTAGGGTTAAGGG+TGG | 0.619527 | 7_3:+48519602 | None:intergenic |
| GGCACTCATGTTGAAAGACT+CGG | 0.619920 | 7_3:+48516021 | None:intergenic |
| AGTAAGGCTTTGGAAGCCAA+TGG | 0.623632 | 7_3:-48516347 | Msa1107110:CDS |
| TGATCATGTTTCTAGGAACA+CGG | 0.625288 | 7_3:-48519343 | Msa1107110:CDS |
| CCTGTTTGGCGACCTCAAAG+AGG | 0.626862 | 7_3:-48517043 | Msa1107110:CDS |
| ACCCTGGCCTTTGACTGTAA+GGG | 0.629132 | 7_3:+48517086 | None:intergenic |
| TGAATCACAGCAATCTCCAA+AGG | 0.631385 | 7_3:-48516305 | Msa1107110:CDS |
| TGAACATGTTCTATAAACCC+TGG | 0.636335 | 7_3:+48517070 | None:intergenic |
| TTAGCTTGTCAGTATCGGTA+GGG | 0.637894 | 7_3:+48516526 | None:intergenic |
| TCTAAAGGTGAAATGAGTGA+AGG | 0.639475 | 7_3:+48519558 | None:intergenic |
| ATACACTTGGTGATGATGGA+AGG | 0.640811 | 7_3:-48519131 | Msa1107110:CDS |
| AAGGCTTTGGAAGCCAATGG+TGG | 0.647272 | 7_3:-48516344 | Msa1107110:CDS |
| ATAGAAAGGATGAATCTCCA+AGG | 0.653144 | 7_3:-48517129 | Msa1107110:CDS |
| ATGAATCATGTATACAACGA+TGG | 0.656023 | 7_3:-48519495 | Msa1107110:CDS |
| ATCGTGAAACTTGTCTGTGG+AGG | 0.656497 | 7_3:+48516216 | None:intergenic |
| CGTGCTGTCAGTGTTCTTAG+GGG | 0.662282 | 7_3:-48517010 | Msa1107110:CDS |
| ATTATGAAACCAAAGAAACA+TGG | 0.673561 | 7_3:+48515844 | None:intergenic |
| GAATAGTTAGGGTTAAGGGT+GGG | 0.680467 | 7_3:+48519603 | None:intergenic |
| CTGGAATTGAAAACCACTCG+CGG | 0.686077 | 7_3:+48515958 | None:intergenic |
| AATCATGTATACAACGATGG+TGG | 0.691205 | 7_3:-48519492 | Msa1107110:CDS |
| ATCCTGAACAGGTTTGCAGG+AGG | 0.698719 | 7_3:-48517336 | Msa1107110:intron |
| GGTGTTGATGATGATACACT+TGG | 0.700349 | 7_3:-48519144 | Msa1107110:CDS |
| AACATCGTGAAACTTGTCTG+TGG | 0.748355 | 7_3:+48516213 | None:intergenic |
| GAATCTCCAAGGTTTCACAA+CGG | 0.755483 | 7_3:-48517118 | Msa1107110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCAATAATAAAGAATA+GGG | + | chr7_3:48515867-48515886 | None:intergenic | 10.0% |
| !! | AAAAATCAATAATAAAGAAT+AGG | + | chr7_3:48515868-48515887 | None:intergenic | 10.0% |
| !! | GAAAAAAACAATATAAAAAT+TGG | - | chr7_3:48516690-48516709 | Msa1107110:intron | 10.0% |
| !!! | ATGAATTTAATATCTTTTTT+AGG | + | chr7_3:48516932-48516951 | None:intergenic | 10.0% |
| !!! | TTAATTTAGTTTATATTGTT+TGG | - | chr7_3:48517143-48517162 | Msa1107110:CDS | 10.0% |
| !!! | ATATAATCCAATGTAATTTT+TGG | - | chr7_3:48516779-48516798 | Msa1107110:intron | 15.0% |
| !!! | TTTTTTACCAAAAATTACAT+TGG | + | chr7_3:48516789-48516808 | None:intergenic | 15.0% |
| !!! | ATTTAATATCTTTTTTAGGA+AGG | + | chr7_3:48516928-48516947 | None:intergenic | 15.0% |
| !! | TATAAACTAAATTAAAAACG+TGG | + | chr7_3:48517138-48517157 | None:intergenic | 15.0% |
| !! | AATGTAATTAAAAACATTGT+CGG | - | chr7_3:48517188-48517207 | Msa1107110:CDS | 15.0% |
| !! | AAAAAACATTAAAACTCATT+TGG | - | chr7_3:48517290-48517309 | Msa1107110:CDS | 15.0% |
| !!! | ATTTTATTAAAGTGATTGAT+TGG | - | chr7_3:48517625-48517644 | Msa1107110:intron | 15.0% |
| !! | AAAAAAAGTTGAAATAACAA+CGG | - | chr7_3:48518888-48518907 | Msa1107110:intron | 15.0% |
| !! | GATGATAAAGATAAAGATAA+AGG | + | chr7_3:48516192-48516211 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTCTTTCTCTTTT+AGG | - | chr7_3:48516561-48516580 | Msa1107110:intron | 20.0% |
| !!! | ATTCTGATCACTTTTTTATT+TGG | - | chr7_3:48516818-48516837 | Msa1107110:intron | 20.0% |
| !!! | TTCTGATCACTTTTTTATTT+GGG | - | chr7_3:48516819-48516838 | Msa1107110:intron | 20.0% |
| !! | GATGTTTAAAGAAAAAACAA+TGG | - | chr7_3:48517399-48517418 | Msa1107110:intron | 20.0% |
| !! | AAACTTATCCTATAGAATAT+CGG | + | chr7_3:48517494-48517513 | None:intergenic | 20.0% |
| !! | TCACTTTAATAAAATACTCA+TGG | + | chr7_3:48517620-48517639 | None:intergenic | 20.0% |
| !!! | TAAATCAAAACACACTTTTT+TGG | + | chr7_3:48517679-48517698 | None:intergenic | 20.0% |
| !!! | GCAAAAAACTTTTTTTTAGA+AGG | + | chr7_3:48517757-48517776 | None:intergenic | 20.0% |
| !!! | TATTTTGAGATCTTACAAAT+CGG | + | chr7_3:48517970-48517989 | None:intergenic | 20.0% |
| !!! | TTTCAAGAATCTAAAATGTT+TGG | + | chr7_3:48518411-48518430 | None:intergenic | 20.0% |
| !! | AAGGGTTTAAAAAGAATATA+TGG | + | chr7_3:48518803-48518822 | None:intergenic | 20.0% |
| !! | AAAAAAGTTGAAATAACAAC+GGG | - | chr7_3:48518889-48518908 | Msa1107110:intron | 20.0% |
| !! | ATATATTTAATGACCGAAAT+TGG | + | chr7_3:48518922-48518941 | None:intergenic | 20.0% |
| !! | TAAACACATGTCTTATAAAA+CGG | + | chr7_3:48519036-48519055 | None:intergenic | 20.0% |
| !! | TTAATCATGAAAAATTTACC+TGG | + | chr7_3:48519146-48519165 | None:intergenic | 20.0% |
| !! | TCATAATCACAAGATAAATT+AGG | - | chr7_3:48519787-48519806 | Msa1107110:five_prime_UTR | 20.0% |
| !!! | ATTGAAATTTGATTCTAGTT+TGG | - | chr7_3:48519814-48519833 | Msa1107110:five_prime_UTR | 20.0% |
| !!! | TTGAAATTTGATTCTAGTTT+GGG | - | chr7_3:48519815-48519834 | Msa1107110:five_prime_UTR | 20.0% |
| ! | GATAGTGAAATGAAAAGATA+TGG | + | chr7_3:48515786-48515805 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTGTTTAGTACTA+TGG | - | chr7_3:48515888-48515907 | Msa1107110:exon | 25.0% |
| !! | AAGATTCAATGAAACTTGTT+TGG | + | chr7_3:48515990-48516009 | None:intergenic | 25.0% |
| ! | TTACTGTTTATAGCATCTAA+AGG | + | chr7_3:48516075-48516094 | None:intergenic | 25.0% |
| ! | TTGTATACATGATTCATTTG+AGG | + | chr7_3:48516117-48516136 | None:intergenic | 25.0% |
| ! | ATAAAAGTTAGACATCGTAT+TGG | - | chr7_3:48516628-48516647 | Msa1107110:intron | 25.0% |
| ! | AGTTGTTAAAATGAAAACCA+CGG | + | chr7_3:48516860-48516879 | None:intergenic | 25.0% |
| ! | TCGCAACATAATAAAAATAC+TGG | - | chr7_3:48516888-48516907 | Msa1107110:intron | 25.0% |
| ! | GTTGTATTTATGTGACTATA+TGG | - | chr7_3:48517455-48517474 | Msa1107110:intron | 25.0% |
| ! | AACTTATCCTATAGAATATC+GGG | + | chr7_3:48517493-48517512 | None:intergenic | 25.0% |
| !!! | TTTCAAAAGTATTGATGAGA+AGG | - | chr7_3:48517533-48517552 | Msa1107110:intron | 25.0% |
| !! | TGGTATAAAATCTTTGCTAT+GGG | + | chr7_3:48517600-48517619 | None:intergenic | 25.0% |
| ! | ATGGTATAAAATCTTTGCTA+TGG | + | chr7_3:48517601-48517620 | None:intergenic | 25.0% |
| ! | TATTAAAGTGATTGATTGGT+AGG | - | chr7_3:48517629-48517648 | Msa1107110:intron | 25.0% |
| !! | GGAGTAAATATCTTTTCTAA+AGG | + | chr7_3:48517658-48517677 | None:intergenic | 25.0% |
| ! | GATTTATTCATCTTGTTCAA+AGG | - | chr7_3:48517693-48517712 | Msa1107110:intron | 25.0% |
| ! | ATAGAATCAGAATATGCAAA+TGG | - | chr7_3:48517840-48517859 | Msa1107110:intron | 25.0% |
| ! | AATGTCCAATCTCAAAATAT+CGG | - | chr7_3:48517902-48517921 | Msa1107110:intron | 25.0% |
| !! | TGAAACAGTATATTTTCTAC+CGG | + | chr7_3:48518047-48518066 | None:intergenic | 25.0% |
| !! | CTGTTTCACTTTAATTTATC+CGG | - | chr7_3:48518059-48518078 | Msa1107110:intron | 25.0% |
| ! | AATTTCATCTTGCATCAAAT+TGG | + | chr7_3:48518097-48518116 | None:intergenic | 25.0% |
| ! | AATTTGATGCAAGATGAAAT+TGG | - | chr7_3:48518096-48518115 | Msa1107110:intron | 25.0% |
| ! | ATTACAACCTAAAGATCTAA+AGG | + | chr7_3:48518163-48518182 | None:intergenic | 25.0% |
| ! | AAAAGATTAAGATGTAGAAG+TGG | - | chr7_3:48518204-48518223 | Msa1107110:intron | 25.0% |
| ! | ACTTCATTTGAATATGTTTC+CGG | - | chr7_3:48518338-48518357 | Msa1107110:intron | 25.0% |
| ! | TTATCAGATAAGCAATAGAA+AGG | - | chr7_3:48518472-48518491 | Msa1107110:intron | 25.0% |
| ! | AGATTGAAATAACACACTTA+CGG | + | chr7_3:48518656-48518675 | None:intergenic | 25.0% |
| !!! | TTTTTTAGAAATCACAGTTG+AGG | - | chr7_3:48518738-48518757 | Msa1107110:intron | 25.0% |
| ! | TTCATCAAAATCATGGAATT+GGG | - | chr7_3:48519567-48519586 | Msa1107110:CDS | 25.0% |
| ! | ATTATGAAACCAAAGAAACA+TGG | + | chr7_3:48519774-48519793 | None:intergenic | 25.0% |
| !! | CATTCTTTTTATCTTAGTAG+TGG | - | chr7_3:48519854-48519873 | Msa1107110:five_prime_UTR | 25.0% |
| AAGGTAAAGGTGAATAGTTA+GGG | + | chr7_3:48516026-48516045 | None:intergenic | 30.0% | |
| GAGGAGTTTGATAAAGAAAA+GGG | + | chr7_3:48516098-48516117 | None:intergenic | 30.0% | |
| TGAGGAGTTTGATAAAGAAA+AGG | + | chr7_3:48516099-48516118 | None:intergenic | 30.0% | |
| ATGAATCATGTATACAACGA+TGG | - | chr7_3:48516120-48516139 | Msa1107110:CDS | 30.0% | |
| TCTTTGATGGAAACTAATCA+TGG | - | chr7_3:48516429-48516448 | Msa1107110:intron | 30.0% | |
| ATTATTAACAGTGCTTGATG+AGG | - | chr7_3:48516521-48516540 | Msa1107110:CDS | 30.0% | |
| !!! | GATCACTTTTTTATTTGGGT+TGG | - | chr7_3:48516823-48516842 | Msa1107110:intron | 30.0% |
| !!! | CTTTTTTATTTGGGTTGGTT+TGG | - | chr7_3:48516828-48516847 | Msa1107110:intron | 30.0% |
| ! | AATGGTTGTACTCTTTTTGT+GGG | - | chr7_3:48517417-48517436 | Msa1107110:intron | 30.0% |
| ! | CTTTTTACCCGATATTCTAT+AGG | - | chr7_3:48517483-48517502 | Msa1107110:intron | 30.0% |
| AAGGAATATATGCTGAAGAA+TGG | - | chr7_3:48517552-48517571 | Msa1107110:intron | 30.0% | |
| AGGAATATATGCTGAAGAAT+GGG | - | chr7_3:48517553-48517572 | Msa1107110:intron | 30.0% | |
| !!! | AGTTTTTTGCCTAAAGAGAT+TGG | - | chr7_3:48517767-48517786 | Msa1107110:intron | 30.0% |
| TTTCAGAAACCAATCTCTTT+AGG | + | chr7_3:48517779-48517798 | None:intergenic | 30.0% | |
| !!! | GAGATTGGTTTCTGAAATTT+TGG | - | chr7_3:48517782-48517801 | Msa1107110:intron | 30.0% |
| AAAACTGCGTGATACAATTA+CGG | + | chr7_3:48517874-48517893 | None:intergenic | 30.0% | |
| AAATTGGTCATAGTAATTGC+CGG | + | chr7_3:48518081-48518100 | None:intergenic | 30.0% | |
| TTTATAGCCAAACTTGCATA+CGG | + | chr7_3:48518380-48518399 | None:intergenic | 30.0% | |
| ! | GAATCTAAAATGTTTGGACA+TGG | + | chr7_3:48518405-48518424 | None:intergenic | 30.0% |
| ! | TTCTAGTTGTGACATGTATA+TGG | - | chr7_3:48519001-48519020 | Msa1107110:intron | 30.0% |
| GGTTTATAAATGCAAGAGTA+AGG | - | chr7_3:48519252-48519271 | Msa1107110:CDS | 30.0% | |
| !! | AATCAACAAGTTGGTAATGT+TGG | - | chr7_3:48519488-48519507 | Msa1107110:CDS | 30.0% |
| CTTCATCAAAATCATGGAAT+TGG | - | chr7_3:48519566-48519585 | Msa1107110:CDS | 30.0% | |
| AATTCCAGAATAGGCAATTT+GGG | - | chr7_3:48519672-48519691 | Msa1107110:CDS | 30.0% | |
| ! | CAATTTGGGAGAGATTTTAT+TGG | - | chr7_3:48519686-48519705 | Msa1107110:CDS | 30.0% |
| AACTACTAACCATGTTTCTT+TGG | - | chr7_3:48519762-48519781 | Msa1107110:five_prime_UTR | 30.0% | |
| AAAAGAGAGAAAGAGAGTGA+TGG | + | chr7_3:48515831-48515850 | None:intergenic | 35.0% | |
| TTTAGTACTATGGCTGATGA+GGG | - | chr7_3:48515898-48515917 | Msa1107110:CDS | 35.0% | |
| ! | TTTCTCTTCTGCTTTGTTGT+GGG | + | chr7_3:48515945-48515964 | None:intergenic | 35.0% |
| !! | TTTTCTCTTCTGCTTTGTTG+TGG | + | chr7_3:48515946-48515965 | None:intergenic | 35.0% |
| AGGTGAATAGTTAGGGTTAA+GGG | + | chr7_3:48516019-48516038 | None:intergenic | 35.0% | |
| AAGGTGAATAGTTAGGGTTA+AGG | + | chr7_3:48516020-48516039 | None:intergenic | 35.0% | |
| GAAGGTAAAGGTGAATAGTT+AGG | + | chr7_3:48516027-48516046 | None:intergenic | 35.0% | |
| TCTAAAGGTGAAATGAGTGA+AGG | + | chr7_3:48516060-48516079 | None:intergenic | 35.0% | |
| AATCATGTATACAACGATGG+TGG | - | chr7_3:48516123-48516142 | Msa1107110:CDS | 35.0% | |
| CTGTTGTTGATCATGTTTCT+AGG | - | chr7_3:48516265-48516284 | Msa1107110:CDS | 35.0% | |
| !! | TGATCATGTTTCTAGGAACA+CGG | - | chr7_3:48516272-48516291 | Msa1107110:CDS | 35.0% |
| ! | ACAGAAGCATAACCTGTAAA+TGG | + | chr7_3:48516309-48516328 | None:intergenic | 35.0% |
| !! | AGGTTATGCTTCTGTTTTGA+AGG | - | chr7_3:48516314-48516333 | Msa1107110:CDS | 35.0% |
| !! | GGTTATGCTTCTGTTTTGAA+GGG | - | chr7_3:48516315-48516334 | Msa1107110:CDS | 35.0% |
| GAAACCTGCACAACAATTAT+TGG | - | chr7_3:48516350-48516369 | Msa1107110:CDS | 35.0% | |
| TCATCCAATAATTGTTGTGC+AGG | + | chr7_3:48516357-48516376 | None:intergenic | 35.0% | |
| TTGGATGAGATATGTGATGT+TGG | - | chr7_3:48516369-48516388 | Msa1107110:CDS | 35.0% | |
| GAAACTAATCATGGTAACAG+TGG | - | chr7_3:48516438-48516457 | Msa1107110:intron | 35.0% | |
| GGTAACAGTGGAATGATTAA+TGG | - | chr7_3:48516450-48516469 | Msa1107110:intron | 35.0% | |
| GGAAACCCTATTCATACATA+CGG | - | chr7_3:48516711-48516730 | Msa1107110:intron | 35.0% | |
| CAACACCGTATGTATGAATA+GGG | + | chr7_3:48516719-48516738 | None:intergenic | 35.0% | |
| TCAACACCGTATGTATGAAT+AGG | + | chr7_3:48516720-48516739 | None:intergenic | 35.0% | |
| !! | TTATTTGGGTTGGTTTGGTT+TGG | - | chr7_3:48516833-48516852 | Msa1107110:intron | 35.0% |
| AACATTGTCGGAAACATTGT+TGG | - | chr7_3:48517200-48517219 | Msa1107110:CDS | 35.0% | |
| ! | TTGATAGCTCCATTGAACTA+AGG | + | chr7_3:48517318-48517337 | None:intergenic | 35.0% |
| TTCAATGGAGCTATCAACTT+GGG | - | chr7_3:48517321-48517340 | Msa1107110:CDS | 35.0% | |
| GGACATGGCATTAATAACAA+TGG | - | chr7_3:48517342-48517361 | Msa1107110:intron | 35.0% | |
| CATGGCATTAATAACAATGG+TGG | - | chr7_3:48517345-48517364 | Msa1107110:intron | 35.0% | |
| ! | CAATGGTTGTACTCTTTTTG+TGG | - | chr7_3:48517416-48517435 | Msa1107110:intron | 35.0% |
| ! | CTCTTTTTGTGGGTAGATTT+TGG | - | chr7_3:48517427-48517446 | Msa1107110:intron | 35.0% |
| AGAATATGCAAATGGATGTG+CGG | - | chr7_3:48517848-48517867 | Msa1107110:intron | 35.0% | |
| TCCAATCTCAAAATATCGGT+CGG | - | chr7_3:48517906-48517925 | Msa1107110:intron | 35.0% | |
| ! | AAGATCTAAAGGTGCACTTT+AGG | + | chr7_3:48518152-48518171 | None:intergenic | 35.0% |
| AAGTGCACCTTTAGATCTTT+AGG | - | chr7_3:48518153-48518172 | Msa1107110:intron | 35.0% | |
| TTAAGATGTAGAAGTGGAAG+TGG | - | chr7_3:48518210-48518229 | Msa1107110:intron | 35.0% | |
| ATAGAAAGGATGAATCTCCA+AGG | - | chr7_3:48518486-48518505 | Msa1107110:intron | 35.0% | |
| TGAACATGTTCTATAAACCC+TGG | + | chr7_3:48518548-48518567 | None:intergenic | 35.0% | |
| AACATGTTCAACAACCTGTT+TGG | - | chr7_3:48518558-48518577 | Msa1107110:intron | 35.0% | |
| TCAGCTGTGATATACACATT+AGG | - | chr7_3:48518838-48518857 | Msa1107110:intron | 35.0% | |
| AAGTTGAAATAACAACGGGT+TGG | - | chr7_3:48518893-48518912 | Msa1107110:intron | 35.0% | |
| CACATGTCTTATAAAACGGT+TGG | + | chr7_3:48519032-48519051 | None:intergenic | 35.0% | |
| !! | CAACATTAGCTTGTCAGTAT+CGG | + | chr7_3:48519097-48519116 | None:intergenic | 35.0% |
| ! | CTAATGTTGGCTAAACAAAC+TGG | - | chr7_3:48519108-48519127 | Msa1107110:CDS | 35.0% |
| ATGTGTTACAGGTGTCTAAT+TGG | - | chr7_3:48519231-48519250 | Msa1107110:CDS | 35.0% | |
| TAAATGCAAGAGTAAGGCTT+TGG | - | chr7_3:48519258-48519277 | Msa1107110:CDS | 35.0% | |
| TCATCTCTTTGTGATTCCTT+TGG | + | chr7_3:48519329-48519348 | None:intergenic | 35.0% | |
| TTGCTTGCGATACTATGATT+CGG | + | chr7_3:48519470-48519489 | None:intergenic | 35.0% | |
| AATAATGGTGCAACAAGCAA+TGG | - | chr7_3:48519524-48519543 | Msa1107110:CDS | 35.0% | |
| ! | GTGGTTTTCAATTCCAGAAT+AGG | - | chr7_3:48519663-48519682 | Msa1107110:CDS | 35.0% |
| CAATTCCAGAATAGGCAATT+TGG | - | chr7_3:48519671-48519690 | Msa1107110:CDS | 35.0% | |
| ! | TTTGGGAGAGATTTTATTGG+TGG | - | chr7_3:48519689-48519708 | Msa1107110:CDS | 35.0% |
| ! | TTGGGAGAGATTTTATTGGT+GGG | - | chr7_3:48519690-48519709 | Msa1107110:CDS | 35.0% |
| !! | GATTCTAGTTTGGGATTAAG+TGG | - | chr7_3:48519824-48519843 | Msa1107110:five_prime_UTR | 35.0% |
| ! | AAAGAGAGTGATGGAAGTGA+TGG | + | chr7_3:48515822-48515841 | None:intergenic | 40.0% |
| GTTTAGTACTATGGCTGATG+AGG | - | chr7_3:48515897-48515916 | Msa1107110:exon | 40.0% | |
| GAATAGTTAGGGTTAAGGGT+GGG | + | chr7_3:48516015-48516034 | None:intergenic | 40.0% | |
| TGAATAGTTAGGGTTAAGGG+TGG | + | chr7_3:48516016-48516035 | None:intergenic | 40.0% | |
| GGATCGTAAAGAGAAGGTAA+AGG | + | chr7_3:48516039-48516058 | None:intergenic | 40.0% | |
| AGTGAAGGATCGTAAAGAGA+AGG | + | chr7_3:48516045-48516064 | None:intergenic | 40.0% | |
| TAACCTGTAAATGGCCCTAA+TGG | + | chr7_3:48516300-48516319 | None:intergenic | 40.0% | |
| !! | GGTGTTGATGATGATACACT+TGG | - | chr7_3:48516471-48516490 | Msa1107110:intron | 40.0% |
| !! | GATGATACACTTGGTGATGA+TGG | - | chr7_3:48516480-48516499 | Msa1107110:intron | 40.0% |
| !! | ATACACTTGGTGATGATGGA+AGG | - | chr7_3:48516484-48516503 | Msa1107110:intron | 40.0% |
| !! | TCATACATACGGTGTTGATG+TGG | - | chr7_3:48516722-48516741 | Msa1107110:intron | 40.0% |
| ! | CATTTGGCTCCTTAGTTCAA+TGG | - | chr7_3:48517306-48517325 | Msa1107110:CDS | 40.0% |
| GTTCAATGGAGCTATCAACT+TGG | - | chr7_3:48517320-48517339 | Msa1107110:CDS | 40.0% | |
| CCAATCTCAAAATATCGGTC+GGG | - | chr7_3:48517907-48517926 | Msa1107110:intron | 40.0% | |
| TACTCTTGGAAATCTGGATC+CGG | - | chr7_3:48518025-48518044 | Msa1107110:intron | 40.0% | |
| CTTCTTTGTCAATCCTGAAC+AGG | - | chr7_3:48518268-48518287 | Msa1107110:intron | 40.0% | |
| TTTGAATATGTTTCCGGCCT+TGG | - | chr7_3:48518344-48518363 | Msa1107110:intron | 40.0% | |
| ACTGACCAGCTTCAGTATAT+CGG | - | chr7_3:48518440-48518459 | Msa1107110:intron | 40.0% | |
| GAATCTCCAAGGTTTCACAA+CGG | - | chr7_3:48518497-48518516 | Msa1107110:intron | 40.0% | |
| CACTTAGCGACAGAAATTAG+AGG | - | chr7_3:48518942-48518961 | Msa1107110:intron | 40.0% | |
| !! | TTAGCTTGTCAGTATCGGTA+GGG | + | chr7_3:48519092-48519111 | None:intergenic | 40.0% |
| !! | ATTAGCTTGTCAGTATCGGT+AGG | + | chr7_3:48519093-48519112 | None:intergenic | 40.0% |
| CGATACTGACAAGCTAATGT+TGG | - | chr7_3:48519095-48519114 | Msa1107110:CDS | 40.0% | |
| TCTGTTTCATTTCTTGCGTG+AGG | - | chr7_3:48519176-48519195 | Msa1107110:CDS | 40.0% | |
| CGACAATGTCTATGTGTTAC+AGG | - | chr7_3:48519220-48519239 | Msa1107110:CDS | 40.0% | |
| ATGTGTATTTCCTCCACCAT+TGG | + | chr7_3:48519287-48519306 | None:intergenic | 40.0% | |
| TGAATCACAGCAATCTCCAA+AGG | - | chr7_3:48519310-48519329 | Msa1107110:CDS | 40.0% | |
| AACATCGTGAAACTTGTCTG+TGG | + | chr7_3:48519405-48519424 | None:intergenic | 40.0% | |
| ATCGCAAGCAATCAACAAGT+TGG | - | chr7_3:48519479-48519498 | Msa1107110:CDS | 40.0% | |
| GGAGTGAGCATGATGAATAA+TGG | - | chr7_3:48519509-48519528 | Msa1107110:CDS | 40.0% | |
| AATGGTGTATCTTTGACGCT+CGG | - | chr7_3:48519542-48519561 | Msa1107110:CDS | 40.0% | |
| CTCGGTCTTCATCAAAATCA+TGG | - | chr7_3:48519560-48519579 | Msa1107110:CDS | 40.0% | |
| ! | CAACTTTTGCGTGACTATGT+AGG | - | chr7_3:48519713-48519732 | Msa1107110:exon | 40.0% |
| !!! | TGAGTGCTGCTGATTTTCAG+CGG | - | chr7_3:48516235-48516254 | Msa1107110:CDS | 45.0% |
| TCTAGGAACACGGTTCCATT+AGG | - | chr7_3:48516282-48516301 | Msa1107110:CDS | 45.0% | |
| CTAGGAACACGGTTCCATTA+GGG | - | chr7_3:48516283-48516302 | Msa1107110:CDS | 45.0% | |
| GTTCCATTAGGGCCATTTAC+AGG | - | chr7_3:48516294-48516313 | Msa1107110:CDS | 45.0% | |
| !!! | CTTCTGTTTTGAAGGGATCG+AGG | - | chr7_3:48516322-48516341 | Msa1107110:CDS | 45.0% |
| TGCTGCTGATGCATCTTTGA+TGG | - | chr7_3:48516416-48516435 | Msa1107110:intron | 45.0% | |
| !!! | CCCGACCGATATTTTGAGAT+TGG | + | chr7_3:48517910-48517929 | None:intergenic | 45.0% |
| TCAATCCTGAACAGGTTTGC+AGG | - | chr7_3:48518276-48518295 | Msa1107110:intron | 45.0% | |
| ACTTGCCGATATACTGAAGC+TGG | + | chr7_3:48518448-48518467 | None:intergenic | 45.0% | |
| TGAAGCGCGACTTGATAGAA+GGG | + | chr7_3:48518821-48518840 | None:intergenic | 45.0% | |
| !! | AACGGGTTGGTCACCAATTT+CGG | - | chr7_3:48518906-48518925 | Msa1107110:intron | 45.0% |
| ! | AACTGGTCTATCTCGTAACC+AGG | - | chr7_3:48519125-48519144 | Msa1107110:CDS | 45.0% |
| !! | AGTAAGGCTTTGGAAGCCAA+TGG | - | chr7_3:48519268-48519287 | Msa1107110:CDS | 45.0% |
| AACTTGTCTGTGGAGGTAGA+TGG | + | chr7_3:48519395-48519414 | None:intergenic | 45.0% | |
| ATCGTGAAACTTGTCTGTGG+AGG | + | chr7_3:48519402-48519421 | None:intergenic | 45.0% | |
| GGCACTCATGTTGAAAGACT+CGG | + | chr7_3:48519597-48519616 | None:intergenic | 45.0% | |
| CTGGAATTGAAAACCACTCG+CGG | + | chr7_3:48519660-48519679 | None:intergenic | 45.0% | |
| CTCTCCCAAATTGCCTATTC+TGG | + | chr7_3:48519679-48519698 | None:intergenic | 45.0% | |
| CAGCAGCACTCATCTGATTC+TGG | + | chr7_3:48516227-48516246 | None:intergenic | 50.0% | |
| !!! | GCTGCTGATTTTCAGCGGTA+TGG | - | chr7_3:48516240-48516259 | Msa1107110:CDS | 50.0% |
| GGAGCTATCAACTTGGGACA+TGG | - | chr7_3:48517327-48517346 | Msa1107110:CDS | 50.0% | |
| ! | GTGCATATGCGTGCTACTCT+TGG | - | chr7_3:48518011-48518030 | Msa1107110:intron | 50.0% |
| ! | GCGTGCTACTCTTGGAAATC+TGG | - | chr7_3:48518019-48518038 | Msa1107110:intron | 50.0% |
| ATCCTGAACAGGTTTGCAGG+AGG | - | chr7_3:48518279-48518298 | Msa1107110:intron | 50.0% | |
| TACCTCCTGCAAACCTGTTC+AGG | + | chr7_3:48518284-48518303 | None:intergenic | 50.0% | |
| ATGGAGCCCCTTACAGTCAA+AGG | - | chr7_3:48518522-48518541 | Msa1107110:intron | 50.0% | |
| ! | ACCCTGGCCTTTGACTGTAA+GGG | + | chr7_3:48518532-48518551 | None:intergenic | 50.0% |
| ! | AACCCTGGCCTTTGACTGTA+AGG | + | chr7_3:48518533-48518552 | None:intergenic | 50.0% |
| CTGTTTGGCGACCTCAAAGA+GGG | - | chr7_3:48518573-48518592 | Msa1107110:intron | 50.0% | |
| AGCGTGCTGTCAGTGTTCTT+AGG | - | chr7_3:48518603-48518622 | Msa1107110:intron | 50.0% | |
| GCGTGCTGTCAGTGTTCTTA+GGG | - | chr7_3:48518604-48518623 | Msa1107110:intron | 50.0% | |
| CGTGCTGTCAGTGTTCTTAG+GGG | - | chr7_3:48518605-48518624 | Msa1107110:intron | 50.0% | |
| CTGTCAGTGTTCTTAGGGGA+TGG | - | chr7_3:48518609-48518628 | Msa1107110:intron | 50.0% | |
| CTGAAGCGCGACTTGATAGA+AGG | + | chr7_3:48518822-48518841 | None:intergenic | 50.0% | |
| !! | AAGGCTTTGGAAGCCAATGG+TGG | - | chr7_3:48519271-48519290 | Msa1107110:CDS | 50.0% |
| !! | GGTTGGTTTGGTTTGGTCCG+TGG | - | chr7_3:48516840-48516859 | Msa1107110:intron | 55.0% |
| CATACGGAGCTGCGTTACCA+AGG | + | chr7_3:48518364-48518383 | None:intergenic | 55.0% | |
| CGCAGCTCCGTATGCAAGTT+TGG | - | chr7_3:48518370-48518389 | Msa1107110:intron | 55.0% | |
| CCATCGCCGTTGTGAAACCT+TGG | + | chr7_3:48518506-48518525 | None:intergenic | 55.0% | |
| CCAAGGTTTCACAACGGCGA+TGG | - | chr7_3:48518503-48518522 | Msa1107110:intron | 55.0% | |
| ! | CCCTGGCCTTTGACTGTAAG+GGG | + | chr7_3:48518531-48518550 | None:intergenic | 55.0% |
| CCCCTTACAGTCAAAGGCCA+GGG | - | chr7_3:48518528-48518547 | Msa1107110:intron | 55.0% | |
| !! | CCTCTTTGAGGTCGCCAAAC+AGG | + | chr7_3:48518575-48518594 | None:intergenic | 55.0% |
| CCTGTTTGGCGACCTCAAAG+AGG | - | chr7_3:48518572-48518591 | Msa1107110:intron | 55.0% | |
| GAACACTGACAGCACGCTCA+GGG | + | chr7_3:48518601-48518620 | None:intergenic | 55.0% | |
| AGAACACTGACAGCACGCTC+AGG | + | chr7_3:48518602-48518621 | None:intergenic | 55.0% | |
| !! | GCTTTGGAAGCCAATGGTGG+AGG | - | chr7_3:48519274-48519293 | Msa1107110:CDS | 55.0% |
| GCCCCTTACAGTCAAAGGCC+AGG | - | chr7_3:48518527-48518546 | Msa1107110:intron | 60.0% | |
| !! | ATGAGTGCCGCGCAGCGTTT+TGG | - | chr7_3:48519608-48519627 | Msa1107110:CDS | 60.0% |
| CGCAAGACCAAAACGCTGCG+CGG | + | chr7_3:48519618-48519637 | None:intergenic | 60.0% | |
| CCACTCGCGGCGTAACTATC+AGG | + | chr7_3:48519647-48519666 | None:intergenic | 60.0% | |
| CCTGATAGTTACGCCGCGAG+TGG | - | chr7_3:48519644-48519663 | Msa1107110:CDS | 60.0% | |
| CGGAGCTGCGTTACCAAGGC+CGG | + | chr7_3:48518360-48518379 | None:intergenic | 65.0% | |
| CGCTCAGGGAGCCCTCTTTG+AGG | + | chr7_3:48518587-48518606 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 48515746 | 48519891 | 48515746 | ID=Msa1107110;Name=Msa1107110 |
| chr7_3 | mRNA | 48515746 | 48519891 | 48515746 | ID=Msa1107110-mRNA-1;Parent=Msa1107110;Name=Msa1107110-mRNA-1;_AED=0.04;_eAED=0.04;_QI=161|1|1|1|1|1|4|152|519 |
| chr7_3 | exon | 48515746 | 48516395 | 48515746 | ID=Msa1107110-mRNA-1:exon:9873;Parent=Msa1107110-mRNA-1 |
| chr7_3 | exon | 48516491 | 48516551 | 48516491 | ID=Msa1107110-mRNA-1:exon:9872;Parent=Msa1107110-mRNA-1 |
| chr7_3 | exon | 48516983 | 48517347 | 48516983 | ID=Msa1107110-mRNA-1:exon:9871;Parent=Msa1107110-mRNA-1 |
| chr7_3 | exon | 48519095 | 48519891 | 48519095 | ID=Msa1107110-mRNA-1:exon:9870;Parent=Msa1107110-mRNA-1 |
| chr7_3 | five_prime_UTR | 48519731 | 48519891 | 48519731 | ID=Msa1107110-mRNA-1:five_prime_utr;Parent=Msa1107110-mRNA-1 |
| chr7_3 | CDS | 48519095 | 48519730 | 48519095 | ID=Msa1107110-mRNA-1:cds;Parent=Msa1107110-mRNA-1 |
| chr7_3 | CDS | 48516983 | 48517347 | 48516983 | ID=Msa1107110-mRNA-1:cds;Parent=Msa1107110-mRNA-1 |
| chr7_3 | CDS | 48516491 | 48516551 | 48516491 | ID=Msa1107110-mRNA-1:cds;Parent=Msa1107110-mRNA-1 |
| chr7_3 | CDS | 48515898 | 48516395 | 48515898 | ID=Msa1107110-mRNA-1:cds;Parent=Msa1107110-mRNA-1 |
| chr7_3 | three_prime_UTR | 48515746 | 48515897 | 48515746 | ID=Msa1107110-mRNA-1:three_prime_utr;Parent=Msa1107110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
